• Kemitorvet, 204, 247

    2800 Kgs. Lyngby

    Denmark

20112020

Research output per year

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Research Output

2020

Algorithmic Clustering Of Single-Cell Cytometry Data-How Unsupervised Are These Analyses Really?

Pedersen, C. B. & Olsen, L. R., 2020, In : Cytometry. Part A. 97, 3, p. 219–221

Research output: Contribution to journalJournal articleResearchpeer-review

2019

Analysis of Mass Cytometry Data

Pedersen, C. B. & Olsen, L. R., 2019, Mass Cytometry: Methods and Protocols. 1 ed. Springer, p. 267-279 (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

BioReader: a text mining tool for performing classification of biomedical literature

Simon, C., Davidsen, K., Hansen, C., Seymour, E., Barnkob, M. B. & Olsen, L. R., 2019, In : BMC Bioinformatics. 19, S13, p. 165-170 6 p., 57.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
232 Downloads (Pure)

Computational Methods for Identification of T Cell Neoepitopes in Tumors

Jurtz, V. I. & Olsen, L. R., 2019, Cancer Bioinformatics. Springer, Vol. 1878. p. 157-172 (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

Getting the Most from Your High-Dimensional Cytometry Data

Olsen, L. R., Pedersen, C. B., Leipold, M. D. & Maecker, H. T., 2019, In : Immunity. 50, 3, p. 535-536

Research output: Contribution to journalLetterResearchpeer-review

Publisher Correction: Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses

Napolitani, G., Teng, K. W. W., Gibani, M. M., Kurupati, P., Rei, M., Aulicino, A., Preciado-Llanes, L., Wong, M. T., Becht, E., Howson, L., de Haas, P., Salio, M., Blohmke, C. J., Olsen, L. R., Pinto, D. M. S., Scifo, L., Jones, C., Dobinson, H., Campbell, D., Juel, H. B. & 10 others, Thomaides-Brears, H., Pickard, D., Bumann, D., Baker, S., Dougan, G., Simmons, A., Gordon, M. A., Newell, E. W., Pollard, A. J. & Cerundolo, V., 2019, In : Nature Immunology. 20, 1 p.

Research output: Contribution to journalJournal articleCommunication

RNase H-dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis

Li, S., Sun, J., Allesøe, R. L., Datta, K., Bao, Y., Oliveira, G., Forman, J., Jin, R., Olsen, L. R., Keskin, D. B., Shukla, S. A., Wu, C. J. & Livak, K. J., 2019, In : Nature protocols. 14, p. 2571-2594

Research output: Contribution to journalJournal articleResearchpeer-review

The anatomy of single cell mass cytometry data

Olsen, L. R., Leipold, M. D., Pedersen, C. B. & Maecker, H. T., 2019, In : Cytometry. Part A. 95, 2, p. 156-172 18 p.

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)
2018

Clonal analysis of Salmonella-specific effector T cells reveals serovar-specific and cross-reactive T cell responses

Napolitani, G., Kurupati, P., Teng, K. W. W., Gibani, M. M., Rei, M., Aulicino, A., Preciado-Llanes, L., Wong, M. T., Becht, E., Howson, L., de Haas, P., Salio, M., Blohmke, C. J., Olsen, L. R., Pinto, D. M. S., Scifo, L., Jones, C., Dobinson, H., Campbell, D., Juel, H. B. & 10 others, Thomaides-Brears, H., Pickard, D., Bumann, D., Baker, S., Dougan, G., Simmons, A., Gordon, M. A., Newell, E. W., Pollard, A. J. & Cerundolo, V., 2018, In : Nature Immunology. 19, 7, p. 1-13 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
74 Downloads (Pure)

Comparison of CyTOF assays across sites: Results of a six-center pilot study

Leipold, M. D., Obermoser, G., Fenwick, C., Kleinstuber, K., Rashidi, N., McNevin, J. P., Nau, A. N., Wagar, L. E., Rozot, V., Davis, M. M., DeRosa, S., Pantaleo, G., Scriba, T. J., Walker, B. D., Olsen, L. R. & Maecker, H. T., 2018, In : Journal of Immunological Methods. 453, p. 37-43

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
373 Downloads (Pure)

Molecular profiling of short-term and long-term surviving patients identifies CD34 mRNA level as prognostic for glioblastoma survival

Michaelsen, S. R., Urup, T., Olsen, L. R., Broholm, H., Lassen, U. & Poulsen, H. S., 2018, In : Journal of Neuro-Oncology. 137, 3, p. 533-542 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial

Keskin, D. B., Anandappa, A. J., Sun, J., Tirosh, I., Mathewson, N. D., Li, S., Oliveira, G., Giobbie-Hurder, A., Felt, K., Gjini, E., Shukla, S. A., Hu, Z., Li, L., Le, P. M., Allesøe, R. L., Richman, A. R., Kowalczyk, M. S., Abdelrahman, S., Geduldig, J. E., Charbonneau, S. & 31 others, Pelton, K., Iorgulescu, J. B., Elagina, L., Zhang, W., Olive, O., McCluskey, C., Olsen, L. R., Stevens, J., Lane, W. J., Salazar, A. M., Daley, H., Wen, P. Y., Chiocca, E. A., Harden, M., Lennon, N. J., Gabriel, S., Getz, G., Lander, E. S., Regev, A., Ritz, J., Neuberg, D., Rodig, S. J., Ligon, K. L., Suvà, M. L., Wucherpfennig, K. W., Hacohen, N., Fritsch, E. F., Livak, K. J., Ott, P. A., Wu, C. J. & Reardon, D. A., 2018, In : Nature. 565, p. 234-239 4 p.

Research output: Contribution to journalLetterResearchpeer-review

Open Access
File
34 Downloads (Pure)

Using microarray-based subtyping methods for breast cancer in the era of high-throughput RNA sequencing

Pedersen, C. B., Nielsen, F. C., Rossing, M. & Olsen, L. R., 2018, In : Molecular Oncology. 12, 12, p. 2136-2146 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
213 Downloads (Pure)
2017

PATH-01. Identification of Prognastic Variables Based on Molecular Profiling of Long-Term and Short-Term Surviving Gglioblastoma Patients

Michaelsen, S. R., Urup, T., Olsen, L. R., Gillberg, L., Broholm, H., Grunnet, K., Grønbæk, K., Hamerlik, P., Lassen, U. & Poulsen, H. S., 2017, In : Neuro-Oncology. 19, suppl_6, p. vi170-vi170 1 p.

Research output: Contribution to journalConference abstract in journalResearchpeer-review

TANTIGEN: a comprehensive database of tumor T cell antigens

Olsen, L. R., Tongchusak, S., Lin, H., Reinherz, E. L., Brusic, V. & Zhang, G. L., 2017, In : Cancer Immunology Immunotherapy. 66, p. 731-735

Research output: Contribution to journalJournal articleResearchpeer-review

Transcriptional changes induced by bevacizumab combination therapy in responding and non-responding recurrent glioblastoma patients

Urup, T., Staunstrup, L. M., Michaelsen, S. R., Vitting-Seerup, K., Bennedbaek, M., Toft, A., Olsen, L. R., Jønson, L., Issazadeh-Navikas, S., Broholm, H., Hamerlik, P., Poulsen, H. S. & Lassen, U., 2017, In : B M C Cancer. 17, 10 p., 278.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
276 Downloads (Pure)
2016

A comprehensive profile of recurrent glioblastoma

Campos, B., Olsen, L. R., Urup, T. & Poulsen, H. S., 2016, In : Oncogene. 35, p. 5819-5825 7 p.

Research output: Contribution to journalReviewResearchpeer-review

Angiotensinogen and HLA class II predict bevacizumab response in recurrent glioblastoma patients

Urup, T., Michaelsen, S. R., Olsen, L. R., Toft, A., Christensen, I. J., Grunnet, K., Winther, O., Broholm, H., Kosteljanetz, M., Issazadeh-Navikas, S., Poulsen, H. S. & Lassen, U., 2016, In : Molecular Oncology. 10, 8, p. 1160-1168 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
203 Downloads (Pure)

Nutritional Stress Induced by Tryptophan-Degrading Enzymes Results in ATF4-Dependent Reprogramming of the Amino Acid Transporter Profile in Tumor Cells

Timosenko, E., Ghadbane, H., Silk, J. D., Shepherd, D., Gileadi, U., Howson, L. J., Laynes, R., Zhao, Q., Strausberg, R. L., Olsen, L. R., Taylor, S., Buffa, F. M., Boyd, R. & Cerundolo, V., 2016, In : Cancer Research. 76, 21, p. 6193-6204 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
188 Downloads (Pure)
2015

A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding

Olsen, L. R., Simon, C., Kudahl, U. J., Bagger, F. O., Winther, O., Reinherz, E. L., Zhang, G. L. & Brusic, V., 2015, In : BMC Medical Genomics. 8, Suppl. 4, p. 566 1 p.

Research output: Contribution to journalConference articleResearchpeer-review

Open Access
File
206 Downloads (Pure)

FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses

Simon, C., Kudahl, U. J., Sun, J., Olsen, L. R., Zhang, G. L., Reinherz, E. L. & Brusic, V., 2015, In : Journal of Immunology Research. 12 p., 380975.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
262 Downloads (Pure)

MTR-18 Predictive Biomarkers Of Bevacizumab Response In Recurrent Glioblastoma Patients

Urup, T., Michaelsen, S. R., Olsen, L. R., Toft, A., Christensen, I. J., Grunnet, K., Broholm, H., Kosteljanetz, M., Poulsen, H. S. & Lassen, U., 2015, In : Neuro-Oncology. 17, suppl. 5, p. v128-v128 1 p.

Research output: Contribution to journalConference abstract in journalResearchpeer-review

Software-Supported USER Cloning Strategies for Site-Directed Mutagenesis and DNA Assembly

Genee, H. J., Bonde, M. T., Bagger, F. O., Jespersen, J. B., Sommer, M. O. A., Wernersson, R. & Olsen, L. R., 2015, In : A C S Synthetic Biology. 4, 3, p. 342-349 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2014

Bioinformatics for cancer immunotherapy target discovery.

Olsen, L. R., Campos, B., Barnkob, M. S., Winther, O., Brusic, V. & Andersen, M. H., 2014, In : Cancer Immunology, Immunotherapy. 63, 12, p. 1235-1249

Research output: Contribution to journalJournal articleResearchpeer-review

Characterizing the human hematopoietic CDome

Barnkob, M. S., Simon, C. & Olsen, L. R., 2014, In : Frontiers in Genetics. 5, 10 p., 331.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
219 Downloads (Pure)

Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas

Olsen, L. R., Campos, B., Winther, O., Sgroi, D. C., Karger, B. L. & Brusic, V., 2014, In : BMC Medical Genomics. 7, Suppl. 3, 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
227 Downloads (Pure)
2013

BlockLogo: Visualization of peptide and sequence motif conservation

Olsen, L. R., Kudahl, U. J., Simon, C., Sun, J., Schönbach, C., Reinherz, E. L., Zhang, G. L. & Brusic, V., 2013, In : Journal of Immunological Methods. 400-401, p. 37-44

Research output: Contribution to journalJournal articleResearchpeer-review

Literature classification for semi-automated updating of biological knowledgebases

Olsen, L. R., Kudahl, U. J., Winther, O. & Brusic, V., 2013, In : B M C Genomics. 14, Suppl. 5, 10 p., S14.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
238 Downloads (Pure)
2011

Conservation analysis of dengue virust-cell epitope-based vaccine candidates using peptide block entropy

Olsen, L. R., Zhang, G. L., Keskin, D. B., Reinherz, E. L. & Brusic, V., 2011, In : Frontiers in Immunology. 2, 15 p., 69.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
231 Downloads (Pure)

FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology

Olsen, L. R., Zhang, G. L., Reinherz, E. L. & Brusic, V., 2011, In : Immunome Research. 7, 3, 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
133 Downloads (Pure)

PHUSER (Primer Help for USER): a novel tool for USER fusion primer design

Olsen, L. R., Hansen, N. B., Bonde, M., Genee, H. J., Holm, D. M. K., Carlsen, S., Hansen, B. G., Patil, K. R., Mortensen, U. H. & Wernersson, R., 2011, In : Nucleic Acids Research. 39, Suppl. 2, p. W61-W67

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
334 Downloads (Pure)