• Ørsteds Plads, 349, 124

    2800 Kgs. Lyngby

    Denmark

20062020

Research output per year

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Research Output

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Journal article
2020

Accurate and robust whole-head segmentation from magnetic resonance images for individualized head modeling

Puonti, O., Van Leemput, K., Saturnino, G. B., Siebner, H. R., Madsen, K. H. & Thielscher, A., 2020, In : NeuroImage. 219, 17 p., 117044.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
46 Downloads (Pure)
2019

A modality-adaptive method for segmenting brain tumors and organs-at-risk in radiation therapy planning

Agn, M., Munck af Rosenschöld, P., Puonti, O., Lundemann, M. J., Mancini, L., Papadaki, A., Thust, S., Ashburner, J., Law, I. & Van Leemput, K., 1 May 2019, In : Medical Image Analysis. 54, p. 220-237

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
298 Downloads (Pure)

MR-based CT metal artifact reduction for head-and-neck photon, electron, and proton radiotherapy

Nielsen, J. S., Van Leemput, K. & Edmund, J. M., 2019, In : Medical Physics. 46, 10, p. 4314-4323

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
99 Downloads (Pure)

MR-based CT metal artifact reduction using Bayesian modelling

Nielsen, J. S., Edmund, J. M. & Van Leemput, K., 2019, In : Physics in Medicine and Biology. 64, 20 p., 245012.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
67 Downloads (Pure)

Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference

Lipkova, J., Angelikopoulos, P., Wu, S., Alberts, E., Wiestler, B., Diehl, C., Preibisch, C., Pyka, T., Combs, S. E., Hadjidoukas, P., Van Leemput, K., Koumoutsakos, P., Lowengrub, J. & Menze, B., Aug 2019, In : IEEE Transactions on Medical Imaging. 38, 8, p. 1875-1884 8654016.

Research output: Contribution to journalJournal articleResearchpeer-review

PSACNN: Pulse sequence adaptive fast whole brain segmentation

Jog, A., Hoopes, A., Greve, D. N., Van Leemput, K. & Fischl, B., 2019, In : NeuroImage. 199, p. 553-569

Research output: Contribution to journalJournal articleResearchpeer-review

File
7 Downloads (Pure)
2018

A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology

Iglesias, J. E., Insausti, R., Lerma-Usabiaga, G., Bocchetta, M., Van Leemput, K., Greve, D. N., van der Kouwe, A., Fischl, B., Caballero-Gaudes, C. & Paz-Alonso, P. M., 2018, In : NeuroImage. 183, p. 314–326

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
147 Downloads (Pure)

Characterization of highly multiplexed monolithic PET / gamma camera detector modules: Paper

Pierce, L. A., Pedemonte, S., Dewitt, S., Macdonald, L., Hunter, W. C. J., Leemput, V. & Miyaoka, R., 2018, In : Physics in Medicine and Biology. 63, 7, 16 p., 075017.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
81 Downloads (Pure)

Systematic comparison of different techniques to measure hippocampal subfield volumes in ADNI2

Mueller, S. G., Yushkevich, P. A., Das, S., Wang, L., Van Leemput, K., Iglesias, J. E., Alpert, K., Mezher, A., Ng, P., Paz, K. & Weiner, M. W., 2018, In : NeuroImage: Clinical. 17, p. 1006-1018

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
278 Downloads (Pure)
2017

A machine learning method for fast and accurate characterization of depth-of-interaction gamma cameras: Paper

Pedemonte, S., Pierce, L. & Van Leemput, K., 2017, In : Physics in Medicine and Biology. 62, 21, p. 8376-8401 26 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
172 Downloads (Pure)

High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas

Saygin, Z. M., Kliemann, D., Iglesias, J. E., van der Kouwe, A. J. W., Boyd, E., Reuter, M., Stevens, A. A., Van Leemput, K., McKee, S. A., Frosch, M. P., Fischl, B. & Augustinack, J. C., 2017, In : NeuroImage. 155, p. 370-382 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
275 Downloads (Pure)

PET/MRI in the presence of metal implants: Completion of the attenuation map from PET emission data

Fuin, N., Pedemonte, S., Catalano, O. A., Izquierdo-Garcia, D., Soricelli, A., Salvatore, M., Heberlein, K., Hooker, J. M., Van Leemput, K. & Catana, C., 1 May 2017, In : Journal of Nuclear Medicine. 58, 5, p. 840-845 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
187 Downloads (Pure)
2016

A Generative Probabilistic Model and Discriminative Extensions for Brain Lesion Segmentation - With Application to Tumor and Stroke

Menze, B. H., Van Leemput, K., Lashkari, D., Riklin-Raviv, T., Geremia, E., Alberts, E., Gruber, P., Wegener, S., Weber, M-A., Székely, G., Ayache, N. & Golland, P., 2016, In : I E E E Transactions on Medical Imaging. 35, 4, p. 933-946

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
392 Downloads (Pure)

A patch-based pseudo-CT approach for MRI-only radiotherapy in the pelvis

Andreasen, D., Van Leemput, K. & Edmund, J. M., 2016, In : Medical Physics. 43, 8, p. 4742-4752 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases

Iglesias, J. E., Van Leemput, K., Augustinack, J., Insausti, R., Fischl, B. & Reuter, M., 2016, In : NeuroImage. 141, p. 542-555

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
237 Downloads (Pure)

Fast and Sequence-Adaptive Whole-Brain Segmentation Using Parametric Bayesian Modeling

Puonti, O., Iglesias, J. E. & Van Leemput, K., 2016, In : NeuroImage. 143, p. 235–249 20 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
373 Downloads (Pure)

Regional Hippocampal Atrophy and Higher Levels of Plasma Amyloid-Beta Are Associated With Subjective Memory Complaints in Nondemented Elderly Subjects

Cantero, J. L., Iglesias, J. E., Van Leemput, K. & Atienza, M., 2016, In : Journals of Gerontology. Series A: Biological Sciences & Medical Sciences. 71, 9, p. 1210-1215

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
2015

A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI.

Iglesias, J. E., Augustinack, J. C., Nguyen, K., Player, C. M., Player, A., Wright, M., Roy, N., Frosch, M. P., McKee, A. C., Wald, L. L., Fischl, B. & Van Leemput, K., 2015, In : NeuroImage. 115, p. 117-137

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
271 Downloads (Pure)

An algorithm for optimal fusion of atlases with different labeling protocols

Eugenio Iglesias, J., Sabuncu, M. R., Aganj, I., Bhatt, P., Casillas, C., Salat, D., Boxer, A., Fischl, B. & Van Leemput, K., 2015, In : NeuroImage. 106, p. 451-463 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
242 Downloads (Pure)

Bayesian segmentation of brainstem structures in MRI

Iglesias, J. E., Van Leemput, K., Bhatt, P., Casillas, C., Dutt, S., Schuff, N., Truran-Sacrey, D., Boxer, A. & Fischl, B., 2015, In : NeuroImage. 113, p. 184-195

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
319 Downloads (Pure)

Cone beam computed tomography guided treatment delivery and planning verification for magnetic resonance imaging only radiotherapy of the brain

Edmund, J. M., Andreasen, D., Mahmood, F. & Van Leemput, K., 2015, In : Acta Oncologica. 54, 9, p. 1496-1500

Research output: Contribution to journalJournal articleResearchpeer-review

Patch-based generation of a pseudo CT from conventional MRI sequences for MRI-only radiotherapy of the brain

Andreasen, D., Van Leemput, K., Hansen, R. H., Andersen, J. A. L. & Edmund, J. M., 2015, In : Medical Physics. 42, 4, p. 1596-1605

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
750 Downloads (Pure)

Quantitative Comparison of 21 Protocols for Labeling Hippocampal Subfields and Parahippocampal Cortical Subregions in In Vivo MRI: Towards Developing a Harmonized Segmentation Protocol.

Yushkevich, P. A., Amaral, R. S. C., Augustinack, J. C., Bender, A. R., Bernstein, J. D., Boccardi, M., Bocchetta, M., Burggren, A. C., Carr, V. A., Chakravarty, M. M. & Van Leemput, K., 2015, In : NeuroImage. 111, p. 526-541

Research output: Contribution to journalJournal articleResearchpeer-review

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

Menze, B. H., Jakab, A., Bauer, S., Kalpathy-Cramer, J., Farahani, K., Kirby, J., Burren, Y., Porz, N., Slotboom, J., Wiest, R. & Van Leemput, K., 2015, In : I E E E Transactions on Medical Imaging. 34, 10, p. 1993 - 2024 33 p.

Research output: Contribution to journalJournal articleResearchpeer-review

File
3082 Downloads (Pure)
2014

A voxel-based investigation for MRI-only radiotherapy of the brain using ultra short echo times

Edmund, J. M., Kjer, H. M., Van Leemput, K., Hansen, R. H., Andersen, J. A. & Andreasen, D., 2014, In : Physics in Medicine and Biology. 59, 23, p. 7501-7519

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)
2013

A unified framework for cross-modality multi-atlas segmentation of brain MRI

Eugenio Iglesias, J., Rory Sabuncu, M. & Van Leemput, K., 2013, In : Medical Image Analysis. 17, 8, p. 1181-1191

Research output: Contribution to journalJournal articleResearchpeer-review

Improved inference in Bayesian segmentation using Monte Carlo sampling: Application to hippocampal subfield volumetry

Iglesias, J. E., Sabuncu, M. R. & Van Leemput, K., 2013, In : Medical Image Analysis. 17, 7, p. 766-778

Research output: Contribution to journalJournal articleResearchpeer-review

Predicting the location of human perirhinal cortex, Brodmann's area 35, from MRI

Augustinack, J. C., Huber, K. E., Stevens, A. A., Roy, M., Frosch, M. P., van der Kouwe, A. J. W., Wald, L. L., Van Leemput, K., McKee, A. C. & Fischl, B., 2013, In : NeuroImage. 64, p. 32-42

Research output: Contribution to journalJournal articleResearchpeer-review

2012

The Relevance Voxel Machine (RVoxM): A Self-Tuning Bayesian Model for Informative Image-Based Prediction

Sabuncu, M. R. & Van Leemput, K., 2012, In : I E E E Transactions on Medical Imaging. 31, 12, p. 2290-2306

Research output: Contribution to journalJournal articleResearchpeer-review

2011

Mild Cognitive Impairment: Differential Atrophy in the Hippocampal Subfields

Hanseeuw, B. J., Van Leemput, K., Kavec, M., Grandin, C., Seron, X. & Ivanoiu, A., 2011, In : American Journal of Neuroradiology. 32, 9, p. 1658-1661

Research output: Contribution to journalJournal articleResearchpeer-review

2010

Association of intramyocellular, intraperitoneal and liver fat with glucose tolerance in severely obese adolescents

Saukkonen, T., Heikkinen, S., Hakkarainen, A., Häkkinen, A-M., Van Leemput, K., Lipsanen-Nyman, M. & Lundbom, N., 2010, In : European Journal of Endocrinology. 163, p. 413-419

Research output: Contribution to journalJournal articleResearchpeer-review

Cerebral measurements and their correlation with the onset age and the duration of opioid abuse

Kivisaari, R., Rapeli, P., Van Leemput, K., Kähkönen, S., Puuskari, V., Jokela, O. & Autti, T., 2010, In : Journal of Opioid Management. 6, 6, p. 423-429

Research output: Contribution to journalJournal articleResearchpeer-review

2009

Encoding Probabilistic Brain Atlases Using Bayesian Inference

Van Leemput, K., 2009, In : I E E E Transactions on Medical Imaging. 28, 6, p. 822-837 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Predicting the location of entorhinal cortex from MRI

Fischl, B., Stevens, A. A., Rajendran, N., Yeo, B. T., Greve, D. N., Van Leemput, K., Polimeni, J. R., Kakunoori, S., Buckner, R. L. & Pacheco, J., 2009, In : NeuroImage. 47, 1, p. 8-17

Research output: Contribution to journalJournal articleResearchpeer-review

Subjects With Intellectual Disability and Familial Need for Full-Time Special Education Show Regional Brain Alterations: A Voxel-Based Morphometry Study

Mannerkoski, M. K., Heiskala, H. J., Van Leemput, K., Aberg, L. E., Raininko, R., Hamaiainen, J. & Autti, T. H., 2009, In : Pediatric Research. 66, 3, p. 306-311

Research output: Contribution to journalJournal articleResearchpeer-review

2008

JNCL patients show marked brain volume alterations on longitudinal MRI in adolescence

Autti, T. H., Hämäläinen, J., Mannerkoski, M., Van Leemput, K. & Åberg, L. E., 2008, In : Journal of Neurology. 255, 8, p. 1226-1230 5 p.

Research output: Contribution to journalJournal articleResearchpeer-review