20142022
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Research Output 2014 2020

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2020
5 Downloads (Pure)

MIBiG 2.0: a repository for biosynthetic gene clusters of known function

Kautsar, S. A., Blin, K., Shaw, S., Navarro-Muñoz, J. C., Terlouw, B. R., van der Hooft, J. J. J., van Santen, J. A., Tracanna, V., Suarez Duran, H. G., Pascal Andreu, V., Selem-Mojica, N., Alanjary, M., Robinson, S. L., Lund, G., Epstein, S. C., Sisto, A. C., Charkoudian, L. K., Collemare, J., Linington, R. G., Weber, T. & 1 others, Medema, M. H., 2020, In : Nucleic acids research. 48, p. D454–D458

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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2019
100 Downloads (Pure)

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

Blin, K., Shaw, S., Steinke, K., Villebro, R., Ziemert, N., Lee, S. Y., Medema, M. H. & Weber, T., 2019, In : Nucleic acids research. 87, W2, p. W81-W87 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
50 Downloads (Pure)

Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST

Tong, Y., Whitford, C. M., Robertsen, H. L., Blin, K., Jørgensen, T. S., Klitgaard, A. K., Gren, T., Jiang, X., Weber, T. & Lee, S. Y., 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 41, p. 20366-20375

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
240 Downloads (Pure)

Recent development of antiSMASH and other computational approaches to mine secondary metabolite biosynthetic gene clusters

Blin, K., Kim, H. U., Medema, M. H. & Weber, T., 2019, In : Briefings in Bioinformatics. 20, 4, p. 1103-1113

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Sequence-based classification of type II polyketide synthase biosynthetic gene clusters for antiSMASH

Villebro, R., Shaw, S., Blin, K. & Weber, T., 2019, In : Journal of Industrial Microbiology and Biotechnology. 46, 3-4, p. 469-475

Research output: Contribution to journalJournal articleResearchpeer-review

148 Downloads (Pure)

The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters

Blin, K., Pascal Andreu, V., de Los Santos, E. L. C., Del Carratore, F., Lee, S. Y., Medema, M. H. & Weber, T., 2019, In : Nucleic acids research. 47, D1, p. D625–D630

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2018
127 Downloads (Pure)

Patscanui: an intuitive web interface for searching patterns in DNA and protein data

Blin, K., Wohlleben, W. & Weber, T., 2018, In : Nucleic acids research. 46, W1, p. W205-W208

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2017
252 Downloads (Pure)

antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification

Blin, K., Wolf, T., Chevrette, M. G., Lu, X., Schwalen, C. J., Kautsar, S. A., Suarez Duran, H. G., de Los Santos, E. L. C., Kim, H. U., Nave, M., Dickschat, J. S., Mitchell, D. A., Shelest, E., Breitling, R., Takano, E., Lee, S. Y., Weber, T. & Medema, M. H., 2017, In : Nucleic acids research. 45, p. W36-W41

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
232 Downloads (Pure)

Designing sgRNAs with CRISPy web: Tips and tricks of the trade

Blin, K., Lee, S. Y. & Weber, T., 2017, In : Lab Times. 1, p. 53

Research output: Contribution to journalJournal articleResearch

Open Access
File
354 Downloads (Pure)

Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

Jiang, X., Ellabaan, M. M. H., Charusanti, P., Munck, C., Blin, K., Tong, Y., Weber, T., Sommer, M. O. A. & Lee, S. Y., 2017, In : Nature Communications. 8, 15784.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
309 Downloads (Pure)

plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters

Kautsar, S. A., Suarez Duran, H. G., Blin, K., Osbourn, A. & Medema, M. H., 2017, In : Nucleic acids research. 45, W1, p. W55-W63 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Recent development of computational resources for new antibiotics discovery

Kim, H. U., Blin, K., Lee, S. Y. & Weber, T., 2017, In : Current opinion in Microbiology. 39, p. 113-120 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

184 Downloads (Pure)

The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery

Alanjary, M., Kronmiller, B., Adamek, M., Blin, K., Weber, T., Huson, D., Philmus, B. & Ziemert, N., 2017, In : Nucleic acids research. 45, p. W42-W48

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
414 Downloads (Pure)

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters

Blin, K., Medema, M. H., Kottmann, R., Lee, S. Y. & Weber, T., 2017, In : Nucleic acids research. 45, D1, p. D555-D559 5 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2016
403 Downloads (Pure)

CRISPy-web: An online resource to design sgRNAs for CRISPR applications

Blin, K., Pedersen, L. E., Weber, T. & Lee, S. Y., 2016, In : Synthetic and Systems Biotechnology. 1, 2, p. 118-121 4 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
538 Downloads (Pure)

Ten Simple Rules for Taking Advantage of Git and GitHub

Perez-Riverol, Y., Gatto, L., Wang, R., Sachsenberg, T., Uszkoreit, J., Leprevost, F. D. V., Fufezan, C., Ternent, T., Eglen, S. J., Katz, D. S., Pollard, T. J., Konovalov, A., Flight, R. M., Blin, K. & Vizcaíno, J. A., 2016, In : P L o S Computational Biology (Online). 12, 7, 11 p., e1004947.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2015
582 Downloads (Pure)

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

Weber, T., Blin, K., Duddela, S., Krug, D., Kim, H. U., Bruccoleri, R., Lee, S. Y., Fischbach, M. A., Müller, R. & Wohlleben, W., 2015, In : Nucleic acids research. 43, W1, p. W237-W243 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File