Jonas Nyvold Pedersen

2024

Impact of Synergy Partner Cel7B on Cel7A Binding Rates: Insights from Single-Molecule Data

Nousi, A., Molina, G. A., Schiano-di-Cola, C., Sørensen, T. H., Borch, K., Pedersen, J. N., Westh, P. & Marie, R., 2024, In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical. 128, 3, p. 635-647 13 p.

Research output: Contribution to journal › Journal article › Research › peer-review

2023

Quantifying DNA-mediated liposome fusion kinetics with a fluidic trap

Marie, R., Rasmussen, M. K. & Pedersen, J. N., 2023, In: Soft Matter. 19, 15, p. 2815-2822

Research output: Contribution to journal › Journal article › Research › peer-review

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14 Downloads (Pure)

2022

Laserprinted Optical Meta-films

Kristensen, A., Zhu, X., Zhou, B., Pedersen, J. N., Jepsen, P. U. & Engelberg, J., 2022. 1 p.

Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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PSF distortion and mislocalization by dielectric nanoparticles in single-molecule microscopy

Fahim, M., Huijben, T., Mortensen, K. I., Pedersen, J. N. & Marie, R., 2022. 1 p.

Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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52 Downloads (Pure)

Resonant Laser Printing of Optical Metasurfaces

Zhu, X., Engelberg, J., Remennik, S., Zhou, B., Pedersen, J. N., Uhd Jepsen, P., Levy, U. & Kristensen, A., 2022, In: Nano Letters. 22, 7, p. 2786-2792

Research output: Contribution to journal › Journal article › Research › peer-review

Trapping, characterization and reactions of biocolloids in a salinity gradient

Rasmussen, M. K., Pedersen, J. N. & Marie, R., 2022, In: E P J Web of Conferences. 2 p., 12005.

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2021

Characterizing size and zeta potential of biocolloids with a salinity gradient

Rasmussen, M. K., Pedersen, J. N. & Marie, R., 2021. 1 p.

Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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Characterizing size and zeta potential of biocolloids with a salinity gradient

Rasmussen, M. K., Pedersen, J. N. & Marie, R., 2021. 2 p.

Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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30 Downloads (Pure)

Confined Brownian Motion Tracked With Motion Blur: Estimating Diffusion Coefficient and Size of Confining Space

Mortensen, K. I., Flyvbjerg, H. & Pedersen, J. N., 2021, In: Frontiers in Physics. 8, 15 p., 583202.

Research output: Contribution to journal › Journal article › Research › peer-review

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259 Downloads (Pure)

Measuring Size and Zeta Potential of Nanoparticles with a Salt Gradient

Rasmussen, M. K., Pedersen, J. N. & Marie, R., 2021, In: Biophysical Journal. 120, 3, p. 273A-273A 1313-Pos.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

2020

Label-Free Sensing of Biorecognition on Liposomes

Rasmussen, M. K., Pedersen, J. N. & Marie, R., 2020, In: ACS Sensors. 5, p. 4057−4063

Research output: Contribution to journal › Journal article › Research › peer-review

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71 Downloads (Pure)

Size and surface charge characterization of nanoparticles with a salt gradient

Rasmussen, M. K., Pedersen, J. N. & Marie, R., 2020, In: Nature Communications. 11, 1, 8 p., 2337.

Research output: Contribution to journal › Journal article › Research › peer-review

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2019

Er alle kræftceller ens?

Marie, R., Pedersen, J. N., Flyvbjerg, H. & Kristensen, A., 2019

Research output: Other contribution › Net publication - Internet publication › Communication

Open Access

2018

Concentrating and labeling genomic DNA in a nanofluidic array

Marie, R., Pedersen, J. N., Mir, K. U., Bilenberg, B. & Kristensen, A., 2018, In: Nanoscale. 10, p. 1376-1382

Research output: Contribution to journal › Journal article › Research › peer-review

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Optical mapping of enriched, megabase-sized DNA molecules in nanodevices

Lopacinska-Jorgensen, J., Pedersen, J. N., Bak, M., Mehrjouy, M., Østergaard, P., Kristensen, A., Taboryski, R. J., Flyvbjerg, H., Marie, R., Tommerup, N. & Silahtaroglu, A., 2018, In: European Journal of Human Genetics. 26, p. 663-664 P14.073A.

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

Single-molecule DNA-mapping and whole-genome sequencing of individual cells

Marie, R., Pedersen, J. N., Bærlocher, L., Koprowska, K., Pødenphant, M., Sabatel, C., Zalkovskij, M., Mironov, A., Bilenberg, B., Ashley, N., Flyvbjerg, H., Bodmer, W. F., Kristensen, A. & Mir, K. U., 2018, In: Proceedings of the National Academy of Sciences of the United States of America. 115, 44, p. 11192-11197

Research output: Contribution to journal › Journal article › Research › peer-review

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280 Downloads (Pure)

2017

Classification of DNA nucleotides with transverse tunneling currents

Pedersen, J. N., Boynton, P., Ventra, M. D., Jauho, A.-P. & Flyvbjerg, H., 2017, In: Nanotechnology. 28, 1, 10 p., 015502.

Research output: Contribution to journal › Journal article › Research › peer-review

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Enrichment of megabase-sized DNA molecules for single-molecule optical mapping and next-generation sequencing

Łopacińska-Jørgensen, J. M., Pedersen, J. N., Bak, M., Mehrjouy, M. M., Sørensen, K. T., Østergaard, P. F., Bilenberg, B., Kristensen, A., Taboryski, R. J., Flyvbjerg, H., Marie, R., Tommerup, N. & Silahtaroglu, A., 2017, In: Scientific Reports. 7, 1, 10 p., 17893.

Research output: Contribution to journal › Journal article › Research › peer-review

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Photothermal Transport of DNA in Entropy-Landscape Plasmonic Waveguides

Smith, C., Thilsted, A. H., Pedersen, J. N., Youngman, T. H., Dyrnum, J. C., Michaelsen, N. A., Marie, R. & Kristensen, A., 2017, In: A C S Nano. p. 4553-4563 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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516 Downloads (Pure)

QmeQ 1.0: An open-source Python package for calculations of transport through quantum dot devices

Kiršanskas, G., Pedersen, J. N., Karlström, O., Leijnse, M. C. & Wacker, A., 2017, In: Computer Physics Communications. 221, p. 317-342

Research output: Contribution to journal › Journal article › Research › peer-review

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368 Downloads (Pure)

2016

Comment on “Temporal Correlations of the Running Maximum of a Brownian Trajectory”

Mortensen, K. & Pedersen, J. N., 2016, In: Physical Review Letters. 117, 24, 1 p., 248901.

Research output: Contribution to journal › Comment/debate › Research › peer-review

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How to connect time-lapse recorded trajectories of motile microorganisms with dynamical models in continuous time

Pedersen, J. N., Li, L., Gradinaru, C., Austin, R. H., Cox, E. C. & Flyvbjerg, H., 2016, In: Physical Review E. 94, 6, 29 p., 062401.

Research output: Contribution to journal › Journal article › Research › peer-review

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532 Downloads (Pure)

How to determine local stretching and tension in a flow-stretched DNA molecule

Pedersen, J. N., Marie, R., Kristensen, A. & Flyvbjerg, H., 2016, In: Physical Review E. 93, 4, 17 p., 042405.

Research output: Contribution to journal › Journal article › Research › peer-review

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New technologies for DNA analysis: a review of the READNA Project

McGinn, S., Bauer, D., Brefort, T., Dong, L., El-Sagheer, A., Elsharawy, A., Evans, G., Falk-Sörqvist, E., Forster, M., Fredriksson, S., Freeman, P., Freitag, C., Fritzsche, J., Gibson, S., Gullberg, M., Heath, S., Heath-Brun, I., Heron, A. J., Hohlbein, J. & Ke, R. & 46 others, Lancaster, O., Le Reste, L., Maglia, G., Marie, R., Mauger, F., Mertes, F., Mignardi, M., Moens, L., Oostmeijer, J., Out, R., Pedersen, J. N., Persson, F., Picaud, V., Rotem, D., Schracke, N., Sengenes, J., Stähler, P. F., Stade, B., Stoddart, D., Teng, X., Veal, C. D., Zahra, N., Bayley, H., Beier, M., Brown, T., Dekker, C., Ekström, B., Flyvbjerg, H., Franke, A., Guenther, S., Kapanidis, A. N., Kaye, J., Kristensen, A., Lehrach, H., Mangion, J., Sauer, S., Schyns, E., Tost, J., van Helvoort, J. M. L. M., van der Zaag, P. J., Tegenfeldt, J. O., Brookes, A. J., Mir, K., Nilsson, M., Willcocks, S. & Gut, I. G., 2016, In: New Biotechnology. 33, 3, p. 311-330 20 p.

Research output: Contribution to journal › Journal article › Research › peer-review

2015

Concentrating Genomic Length DNA in a Microfabricated Array

Chen, Y., Abrams, E. S., Boles, T. C., Pedersen, J. N., Flyvbjerg, H., Austin, R. H. & Sturm, J. C., 2015, In: Physical Review Letters. 114, 19, 5 p., 198303.

Research output: Contribution to journal › Journal article › Research › peer-review

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Estimation of motility parameters from trajectory data: A condensate of our recent results

Vestergaard, C. L., Pedersen, J. N., Mortensen, K. I. & Flyvbjerg, H., 2015, In: European Physical Journal: Special Topics. 224, 7, p. 1151-1168 18 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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541 Downloads (Pure)

Optical mapping of single-molecule human DNA in disposable, mass-produced all-polymer

Østergaard, P. F., Lopacinska-Jørgensen, J., Pedersen, J. N., Tommerup, N., Kristensen, A., Flyvbjerg, H., Silahtaroglu, A., Marie, R. & Taboryski, R. J., 2015, In: Journal of Micromechanics and Microengineering. 25, p. 105002 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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501 Downloads (Pure)

2014

Nanofluidics to Enhance Single Molecule DNA Imaging: Detecting Genomic Structural Variation in Humans

Bauer, D. L. V., Marie, R., Pedersen, J. N., Rasmussen, K. H., Yusuf, M., Volpi, E., Flyvbjerg, H., Kristensen, A. & Mir, K. U., 2014, In: Biophysical Journal. 106, 2, p. 395A

Research output: Contribution to journal › Conference abstract in journal › Research › peer-review

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Thermophoretic forces on DNA measured with a single-molecule spring balance

Pedersen, J. N., Lüscher, C. J., Marie, R., Thamdrup, L. H., Kristensen, A. & Flyvbjerg, H., 2014, In: Physical Review Letters. 113, 26, p. 268301 5 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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603 Downloads (Pure)

2013

A diagrammatic description of the equations of motion, current and noise within the second-order von Neumann approach

Karlstrom, O., Emary, C., Zedler, P., Pedersen, J. N., Bergenfeldt, C., Samuelsson, P., Brandes, T. & Wacker, A., 2013, In: Journal of Physics A: Mathematical and Theoretical. 46, 6, 23 p.

Research output: Contribution to journal › Journal article › Research › peer-review

A nanofluidic device for mapping single DNA molecules to the human genome

Marie, R., Pedersen, J. N., L. Bauer, D., Rasmussen, K. H., Yusuf, M., Volpi, E., U Mir, K., Flyvbjerg, H. & Kristensen, A., 2013, Proceedings of the 39th International Conference on Micro and Nano Engineering. 1 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

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Fully Streched Single DNA Molecules in a Nanofluidic Chip Show Large-Scale Structural Variation

Pedersen, J. N., Marie, R., Bauer, D. L., Rasmussen, K. H., Yusuf, M. A., Volpi, E. V., Kristensen, A., Mir, K. U. & Flyvbjerg, H., 2013, In: Biophysical Journal. 104, 2; SUPP/1, p. 175a

Research output: Contribution to journal › Comment/debate › Research › peer-review

2 Downloads (Pure)

Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device

Marie, R., Pedersen, J. N., L. V. Bauer, D., Rasmussen, K. H., Yusuf, M., Volpi, E., Flyvbjerg, H., Kristensen, A. & U. Mirb, K., 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 13, p. 4893-4898

Research output: Contribution to journal › Journal article › Research › peer-review

Visualizing structural variations of single DNA molecules in a nanofluidic device

Marie, R., Pedersen, J. N., Bauer, D. L. V., Rasmussen, K. H., Yusuf, M., Volpi, E., U Mir, K., Flyvbjerg, H. & Kristensen, A., 2013. 1 p.

Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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197 Downloads (Pure)

2012

DNA confinement in nanochannels: physics and biological applications

Reisner, W., Pedersen, J. N. & Austin, R. H., 2012, In: Reports on Progress in Physics. 75, 10, 34 p.

Research output: Contribution to journal › Journal article › Research › peer-review

2011

Canyon of current suppression in an interacting two-level quantum dot

Karlström, O., Pedersen, J. N., Samuelsson, P. & Wacker, A., 2011, In: Physical Review B Condensed Matter. 83, 20, p. 205412-1 -205412-16

Research output: Contribution to journal › Journal article › Research › peer-review

Probing the invasiveness of prostate cancer cells in a 3D microfabricated landscape

Liu, L., Sun, B., Pedersen, J. N., Yong, K.-M. A., Getzenberg, R. H., Stone, H. A. & Austin, R. H., 2011, In: Proceedings of the National Academy of Sciences of the United States of America.

Research output: Contribution to journal › Journal article › Research › peer-review

2010

Correlation-induced conductance suppression at level degeneracy in a quantum dot

Nilsson, H. A., Karlström, O., Larsson, M., Caroff, P., Pedersen, J. N., Samuelson, L., Wacker, A., Wernersson, L.-E. & Xu, H. Q., 2010, In: Physical Review Letters. 104, 18, p. 186804

Research output: Contribution to journal › Journal article › Research › peer-review

Modeling of cotunneling in quantum dot systems

Pedersen, J. N. & Wacker, A., 2010, In: Physica E: Low-Dimensional Systems and Nanostructures. 42, 3, p. 595-599

Research output: Contribution to journal › Journal article › Research › peer-review

Modeling of DNA in Nanochannels using linear elasticity theory

Pedersen, J. N., Mikkelsen, M. B. L., Reisner, W., Kristensen, A. & Flyvbjerg, H., 2010.

Research output: Contribution to conference › Poster › Research › peer-review

Nanoimprinted polymer chips for light induced local heating of liquids in micro- and nanochannels

Thamdrup, L. H., Pedersen, J. N., Flyvbjerg, H., Larsen, N. B. & Kristensen, A., 2010, In: Proceedings of SPIE - The International Society for Optical Engineering. 7764, p. 77640I

Research output: Contribution to journal › Conference article › Research

2009

Bubble merging in breathing DNA as a vicious walker problem in opposite potentials

Pedersen, J. N., Hansen, M. S., Novotny, T., Ambjornsson, T. & Metzler, R., 2009, In: Journal of Chemical Physics. 130, 16, p. 164117

Research output: Contribution to journal › Journal article › Research › peer-review

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Interplay between interference and Coulomb interaction in the ferromagnetic Anderson model with applied magnetic field

Pedersen, J. N., Bohr, D., Wacker, A., Novotný, T., Schmitteckert, P. & Flensberg, K., 2009, In: Physical Review B Condensed Matter. 79, p. 125403

Research output: Contribution to journal › Journal article › Research › peer-review

2007

2005

Noncollinear magnetoconductance of a quantum dot

Pedersen, J. N., Thomassen, J. Q. & Flensberg, K., 2005, In: Physical Review B Condensed Matter. 72, p. 045341

Research output: Contribution to journal › Journal article › Research › peer-review

Tunneling through nanosystems: Combining broadening with many-particle states

Pedersen, J. N. & Wacker, A., 2005, In: Physical Review B Condensed Matter. 72, p. 195330

Research output: Contribution to journal › Journal article › Research › peer-review

2002

Anomalous transport in conical granular piles

Pedersen, J. N., 2002, In: Physical Review E. 66, p. 031305

Research output: Contribution to journal › Journal article › Research › peer-review

Jonas Nyvold Pedersen

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