Jan Madsen

2025

Antifouling Slippery Liquid Infused Porous Surface for Surfactant-Free PCR on Digital Microfluidics Platform

Kalyani, N., Pastor, M. C., Pezzarossa, L., Møller-Hansen, I., Tanev, G., Dimaki, M., Borodina, I., Madsen, J. & Svendsen, W. E., 2025, In: Talanta. 282, 9 p., 127001.

Research output: Contribution to journal › Journal article › Research › peer-review

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20 Downloads (Pure)

2024

A Holistic Review of the TinyML Stack for Predictive Maintenance

Njor, E., Hasanpour, M. A., Madsen, J. & Fafoutis, X., 2024, In: IEEE Access. 12, p. 184861-184882

Research output: Contribution to journal › Journal article › Research › peer-review

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29 Downloads (Pure)

teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering

Petersen, S. D., Levassor, L., Pedersen, C. M., Madsen, J., Hansen, L. G., Zhang, J., Haidar, A. K., Frandsen, R. J. N., Keasling, J. D., Weber, T., Sonnenschein, N. & K. Jensen, M., 2024, In: PLOS Computational Biology. 20, 3, 24 p., e1011929.

Research output: Contribution to journal › Journal article › Research › peer-review

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349 Downloads (Pure)

2023

AI-Based Detection of Droplets and Bubbles in Digital Microfluidic Biochips

Xu, J., Fan, W., Madsen, J., Tanev, G. P. & Pezzarossa, L., 2023, Proceedings of the 2023 Design, Automation & Test in Europe Conference & Exhibition (DATE). IEEE, 6 p. 10136887

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Data Aware Neural Architecture Search

Njor, E., Madsen, J. & Fafoutis, X., 2023, Proceedings of tinyML Research Symposium. 7 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

PCR Purification using Digital Microfluidics

Kalyani, N., Cernuda Pastor, M., Tanev, G., Pezzarosa, L., Møller-Hansen, I., Dimaki, M., Borodina, I., Madsen, J. & Svendsen, W. E., 2023. 2 p.

Research output: Contribution to conference › Conference abstract for conference › Research

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90 Downloads (Pure)

2022

A Primer for tinyML Predictive Maintenance: Input and Model Optimisation

Jørgensen Njor, E., Madsen, J. & Fafoutis, X., 2022, Proceedings of 18^th International Conference on Artificial Intelligence Applications and Innovations. Vol. 647. p. 67-78

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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1347 Downloads (Pure)

BiowareCFP: An Application-Agnostic Modular Reconfigurable Cyber-Fluidic Platform

Tanev, G., Svendsen, W. E. & Madsen, J., 2022, In: Micromachines. 13, 2, 18 p., 249.

Research output: Contribution to journal › Journal article › Research › peer-review

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134 Downloads (Pure)

2020

A Computer Vision Algorithm for the Digitalization of Colorimetric Lateral Flow Assay Readouts

Pezzarossa, L., Preus, S. I., Svendsen, W. E. & Madsen, J., 2020, 2020 Symposium on Design, Test, Integration & Packaging of MEMS and MOEMS (DTIP). IEEE, 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

A Parallel Approach to Perform Threshold Value and Propagation Delay Analyses of Genetic Logic Circuit Models

Sanaullah, Baig, H., Madsen, J. & Lee, J. A., 2020, In: ACS Synthetic Biology. 9, p. 3422-3428

Research output: Contribution to journal › Journal article › Research › peer-review

Genetic Design Automation: A Practical Approach for the Analysis, Verification and Synthesis of Genetic Logic Circuits

Baig, H. & Madsen, J., 2020, Springer. 164 p.

Research output: Book/Report › Book › Education

Virtual Experimentation Using DVASim

Baig, H. & Madsen, J., 2020, Genetic Design Automation. Springer, p. 27-36

Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review

2019

Affordable Fabrication of Conductive Electrodes and Dielectric Films for a Paper-based Digital Microfluidic Chip

Soum, V., Kim, Y., Park, S., Chuong, M., Ryu, S. R., Lee, S. H., Tanev, G. P., Madsen, J., Kwon, O.-S. & Shin, K., 2019, In: Micromachines. 10, 2, 10 p., 109.

Research output: Contribution to journal › Journal article › Research › peer-review

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713 Downloads (Pure)

Bioøkonomiens maskinrum. DTU Sektorudviklingsrapport

Bolwig, S., Tanner, A. N., Lange, L., Skött, A. P., Ahrenfeldt, J., Andersen, M., Angelidaki, I., Bengtsen, P. A., Clausen, L. R., Christensen, B. B., Hansen, L. M., Hobley, T. J., Jacobsen, C., Ingemann Jensen, S., Kledal, T. N., Jensen, L. K., Lisbjerg, D., Madsen, J., Mikkelsen, A. L. & Molzen, J. E. & 5 others, Mussatto, S. I., Valverde Pérez, B., Riisager-Simonsen, C., Thellersen, M. & Thomsen, T. P., 2019, Danmarks Tekniske Universitet (DTU). 68 p.

Research output: Book/Report › Report › Research

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1062 Downloads (Pure)

Design-For-Testability of On-Chip Control in mVLSI Biochips

Potluri, S., Pop, P. & Madsen, J., 2019, In: I E E E Design & Test. 36, 1, p. 48-56 6 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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571 Downloads (Pure)

Model-based systems engineering for life-sciences instrumentation development

Patou, F., Dimaki, M., Maier, A., Svendsen, W. E. & Madsen, J., 2019, In: Systems Engineering. 22, 2, p. 98-113 16 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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1140 Downloads (Pure)

2018

A modular reconfigurable digital microfluidics platform

Tanev, G. P., Svendsen, W. E. & Madsen, J., 2018, Proceedings of the 2018 Symposium on Design, Test, Integration & Packaging of MEMS and MOEMS (DTIP). IEEE, 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

A novel metering component for volume management in flow-based microfluidic biochips

Schneider, A., Pop, P. & Madsen, J., 22 Jun 2018, Proceedings of 20th Symposium on Design, Test, Integration and Packaging of MEMS and MOEMS. IEEE, p. 1-6 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Microfluidic valve

Potluri, S. (Inventor), Pop, P. (Inventor), Madsen, J. (Inventor) & Schneider, A. R. (Inventor), 2018, IPC No. B01L3/00; F16K99/00, Patent No. WO2018104516 , 14 Jun 2018, Priority date 8 Feb 2016, Priority No. EP20160203030

Research output: Patent

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361 Downloads (Pure)

Paper-based sensors for rapid detection of virulence factor produced by Pseudomonas aeruginosa

Alatraktchi, F. A., Noori, J. S., Tanev, G. P., Mortensen, J., Dimaki, M., Johansen, H. K., Madsen, J., Molin, S. & Svendsen, W. E., 2018, In: P L o S One. 13, 3, 9 p., e0194157.

Research output: Contribution to journal › Journal article › Research › peer-review

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1934 Downloads (Pure)

Report on DATE 2018 in Dresden, Germany

Madsen, J. & Coskun, A. K., 2018, In: I E E E Design & Test. 35, 4, p. 75 - 77

Research output: Contribution to journal › Journal article › Research › peer-review

2017

A systematic and practical method for selecting systems engineering tools

Munck, A. & Madsen, J., 2017, Proceedings of the Systems Conference (SysCon), 2017 Annual IEEE International. IEEE, p. 201-208 8 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

A Top-down Approach to Genetic Circuit Synthesis and Optimized Technology Mapping

Baig, H. & Madsen, J., 2017, Proceedings of 9th International Workshop on Bio-Design Automation. 2 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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356 Downloads (Pure)

Distributed co-simulation of embedded control software with exhaust gas recirculation water handling system using INTO-CPS

Pedersen, N., Lausdahl, K., Sanchez, E. V., Larsen, P. G. & Madsen, J., 2017, SIMULTECH 2017 - Proceedings of the 7th International Conference on Simulation and Modeling Methodologies, Technologies and Applications. SCITEPRESS Digital Library, p. 73-82 10 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Helbredstjek af dansk sundhedsteknologi: Sektorudviklingsrapport

Nielsen, N. A., Bardram, J. E., Madsen, J., Jørgensen, J. B., Riis, M. B., Andersen, H. B., Sørensen, H. B. D., Svendsen, W. E., Andersen, P. E., Pryds, N., Lauritsen, S. N., Skov, A. L., Buch, M. J., Andersen, M., Billund, C. H., Brückner, L., Kruse, S., Molzen, J. E. & Odgaard, M. H., 2017, Technical University of Denmark. 72 p.

Research output: Book/Report › Report › Commissioned

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2409 Downloads (Pure)

Logic analysis and verification of n-input genetic logic circuits

Baig, H. & Madsen, J., 2017, Proceedings of 20th Design, Automation and Test in Europe. IEEE, p. 654-657 7927070. (Proceedings of the Design, Automation, and Test in Europe Conference and Exhibition).

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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774 Downloads (Pure)

Paper-Based Digital Microfluidic Chip for Multiple Electrochemical Assay Operated by a Wireless Portable Control System

Ruecha, N., Lee, J., Chae, H., Cheong, H., Soum, V., Preechakasedkit, P., Chailapakul, O., Tanev, G. P., Madsen, J., Rodthongkum, N., Kwon, O.-S. & Shin, K., 2017, In: Advanced Materials Technologies. 2, 3, 8 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Pin-count reduction for continuous flow microfluidic biochips

Schneider, A., Pop, P. & Madsen, J., 6 Apr 2017, In: Microsystem Technologies. 24, 1, p. 483-494

Research output: Contribution to journal › Journal article › Research › peer-review

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489 Downloads (Pure)

Scheduling and Fluid Routing for Flow-Based Microfluidic Laboratories-on-a-Chip

Minhass, W. H., McDaniel, J., Raagaard, M. L., Brisk, P., Pop, P. & Madsen, J., 2017, In: I E E E Transactions on Computer - Aided Design of Integrated Circuits and Systems. 37, 3, p. 615 - 628

Research output: Contribution to journal › Journal article › Research › peer-review

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454 Downloads (Pure)

Simulation Approach for Timing Analysis of Genetic Logic Circuits

Baig, H. & Madsen, J., 2017, In: A C S Synthetic Biology. 6, 7, p. 1169-1179 11 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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794 Downloads (Pure)

Synthesis of on-chip control circuits for mVLSI biochips

Potluri, S., Schneider, A. R., Hørslev-Petersen, M., Pop, P. & Madsen, J., 2017, Proceedings of 20th Design, Automation and Test in Europe. IEEE, p. 1799-1804 7927284. (Proceedings of the Design, Automation, and Test in Europe Conference and Exhibition).

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

System-Level Sensitivity Analysis of SiNW-bioFET-Based Biosensing Using Lockin Amplification

Patou, F., Dimaki, M., Kjærgaard, C., Madsen, J. & Svendsen, W. E., 2017, In: I E E E Sensors Journal. 17, 19, p. 6295-6311

Research output: Contribution to journal › Journal article › Research › peer-review

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1091 Downloads (Pure)

Taming Living Logic using Formal Methods

Baig, H. & Madsen, J., 2017, Models, Algorithms, Logics and Tools. Springer, p. 503–515 (Lecture Notes in Computer Science, Vol. 10460).

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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464 Downloads (Pure)

Test-driven modeling and development of cloud-enabled cyber-physical smart systems

Munck, A. & Madsen, J., 2017, Proceedings of the Systems Conference (SysCon), 2017 Annual IEEE International. IEEE, p. 83-90 8 p. (Annual Ieee Systems Conference).

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Volume management for fault-tolerant continuous-flow microfluidics

Schneider, A. R., Pop, P. & Madsen, J., 2017, Proceedings of 2017 IEEE International Symposium on Defect and Fault Tolerance in VLSI and Nanotechnology Systems . IEEE, Vol. 2017. p. 102-102 1 p.

Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

Open Access

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303 Downloads (Pure)

Waste-aware fluid volume assignment for flow-based microfluidic biochips

Schneider, A. R., Pop, P. & Madsen, J., 2017, 2017 Symposium on Design, Test, Integration and Packaging of MEMS/MOEMS (DTIP). IEEE, p. 1-6

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

2016

A Pin-Count Reduction Algorithm for Flow-Based Microfluidic Biochips

Schneider, A. R., Pop, P. & Madsen, J., 2016, Collection of papers presented at the 18th Symposium on Design, Test, Integration and Packaging of MEMS/MOEMS (DTIP 2016) . IEEE, 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

D-VASim: An Interactive Virtual Laboratory Environment for the Simulation and Analysis of Genetic Circuits

Baig, H. & Madsen, J., 2016, In: Bioinformatics. 33, 2, p. 297-299 3 p.

Research output: Contribution to journal › Journal article › Research › peer-review

1 Downloads (Pure)

D-VASim: A Software Tool to Simulate and Analyze Genetic Logic Circuits

Baig, H. & Madsen, J., 2016

Research output: Other contribution › Net publication - Internet publication › Research

Open Access

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250 Downloads (Pure)

Evolvable Smartphone-Based Platforms for Point-Of-Care In-Vitro Diagnostics Applications

Patou, F., Al Atraktchi, F.A.-Z., Kjærgaard, C., Dimaki, M., Madsen, J. & Svendsen, W. E., 2016, In: Diagnostics. 6, 33, 17 p.

Research output: Contribution to journal › Journal article › Research › peer-review

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728 Downloads (Pure)

FMI for Co-Simulation of Embedded Control Software

Pedersen, N., Bojsen, T., Madsen, J. & Vejlgaard-Laursen, M., 2016, Proceedings of the 1st Japanese Modelica Conference 2016. Linköping University Electronic Press, p. 70-77 8 p. (Linköping Electronic Conference Proceedings; No. 124).

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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1947 Downloads (Pure)

Logic and Timing Analysis of Genetic Logic Circuits using D-VASim

Baig, H. & Madsen, J., 2016, Proceedings of the 8th International Workshop on Bio-Design Automation (IWBDA 2016). p. 77-78

Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

Open Access

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149 Downloads (Pure)

Microfluidic Very Large Scale Integration (VLSI): Modeling, Simulation, Testing, Compilation and Physical Synthesis

Pop, P., Minhass, W. H. & Madsen, J., 2016, Springer. 270 p.

Research output: Book/Report › Book › Research › peer-review

Model-Based Evaluation Of System Scalability: Bandwidth Analysis For Smartphone-Based Biosensing Applications

Patou, F., Madsen, J., Dimaki, M. & Svendsen, W. E., 2016, Proceedings of Euromicro Conference on Digital System Design 2016. IEEE, p. 718-722 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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492 Downloads (Pure)

Smartphone-based biosensing platform evolution: implementation of electrochemical analysis capabilities

Patou, F., Dimaki, M., Svendsen, W. E., Kjærgaard, C. & Madsen, J., 2016, Proceedings of the 10th International Symposium on Medical Information and Communication Technology (ISMICT). IEEE, 5 p.

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

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593 Downloads (Pure)

Synthesis of Application-Specific Fault-Tolerant Digital Microfluidic Biochip Architectures

Alistar, M., Pop, P. & Madsen, J., 2016, In: I E E E Transactions on Computer - Aided Design of Integrated Circuits and Systems. 35, 5, p. 764-777 14 p.

Research output: Contribution to journal › Journal article › Research › peer-review

Timing Analysis of Genetic Logic Circuits using D-VASim

Baig, H. & Madsen, J., 2016. 1 p.

Research output: Contribution to conference › Conference abstract for conference › Research › peer-review

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442 Downloads (Pure)

2015

A Smart Mobile Lab-on-Chip-Based Medical Diagnostics System Architecture Designed For Evolvability

Patou, F., Dimaki, M., Svendsen, W. E., Kjærgaard, C. & Madsen, J., 2015, Proceedings of the Euromicro Conference on Digital System Design 2015. IEEE, p. 390-398

Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

Open Access

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1634 Downloads (Pure)

D-VASim: Dynamic Virtual Analyzer and Simulator for Genetic Circuits

Baig, H. & Madsen, J., 2015, Proceedings of the 7th International Workshop on Bio-Design Automation (IWBDA 2015). p. 48-49

Research output: Chapter in Book/Report/Conference proceeding › Conference abstract in proceedings › Research › peer-review

Open Access

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471 Downloads (Pure)

Fault-Tolerant Digital Microfluidic Biochips: Compilation and Synthesis

Pop, P. (Editor), Alistar, M. (Editor), Stuart, E. (Editor) & Madsen, J. (Editor), 2015, Springer. 234 p.

Research output: Book/Report › Book › Research

Jan Madsen

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