Publications per year
Publications per year
Personal profile
Profile
Please see my group website, https://www.healthtech.dtu.dk/protein-sorting
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Publications
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DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
Thumuluri, V., Almagro Armenteros, J. J., Johansen, A. R., Nielsen, H. & Winther, O., 2022, In: Nucleic Acids Research. 50, 1, p. W228-W234Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile169 Downloads (Pure) -
NetSolP: predicting protein solubility in E. coli using language models
Thumuluri, V., Martiny, H-M., Armenteros, J. J. A., Salomon, J., Nielsen, H., Johansen, A. R. & Valencia, A. (ed.), 2022, In: Bioinformatics. 38, 4, p. 941–946 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile51 Downloads (Pure) -
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning
Høie, M. H., Kiehl, E. N., Petersen, B., Nielsen, M., Winther, O., Nielsen, H., Hallgren, J. & Marcatili, P., 2022, In: Nucleic Acids Research. 50, 1, p. W510-W515Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile29 Downloads (Pure) -
The dynamic landscape of peptide activity prediction
Bárcenas, O., Pintado-Grima, C., Sidorczuk, K., Teufel, F., Nielsen, H., Ventura, S. & Burdukiewicz, M., 2022, In: Computational and Structural Biotechnology Journal. 20, p. 6526-6533Research output: Contribution to journal › Review › peer-review
Open AccessFile6 Downloads (Pure) -
Deep protein representations enable recombinant protein expression prediction
Martiny, H-M., Armenteros, J. J. A., Johansen, A. R., Salomon, J. & Nielsen, H., 2021, In: Computational Biology and Chemistry. 95, 9 p., 107596.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile92 Downloads (Pure)
Projects
- 6 Finished
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T Cell Immunoinformatics
Reynisson, B., Nielsen, M., Marcatili, P., Nielsen, H., Kringelum, J. V. & Purcell, A. W.
01/04/2018 → 17/06/2021
Project: PhD
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Protein sorting in pathogenic unicellular eukaryotes
Almagro Armenteros, J. J., Nielsen, H., Winther, O., Marcatili, P., Boomsma, W. & Rost, B.
Technical University of Denmark
01/12/2016 → 20/02/2020
Project: PhD
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Isolation and characterization of bacteriaophages with therapeutic potential
Villarroel, J., Nielsen, M., Kilstrup, M., Larsen, M. V., Nielsen, H., Lavigne, R. & Nielsen, D. S.
Technical University of Denmark
01/12/2013 → 28/02/2018
Project: PhD
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Molecular Evolution of Human Immunodeficiency Virus (HIV) and Hepatitis C Virus (HCV)
Oliveira, R. G., Pedersen, A. G., Nielsen, H., Hurst, L. D. & Schierup, M.
01/09/2003 → 02/07/2008
Project: PhD
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Biological Sequence Analysis
Brunak, S., Sorgenfrei Blom, N., Boesen, L., Gorodkin, J., Hansen, J., Knudsen, S., Krogh, A. S., Pedersen, A. G., Rapacki, K., Stærfeldt, H. H., Keiding, J., Nielsen, H., Dahlin, K. B., Larsen, T. S., Gupta, R., Andersen, C. A., Worning, P., Workman, C., Jarmer, H. Ø., Ussery, D. & Jensen, L. J.
01/01/1998 → 31/08/2003
Project: Research
Activities
- 10 Conference presentations
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Practical applications of language models in protein science
Henrik Nielsen (Guest lecturer)
30 Nov 2022Activity: Talks and presentations › Conference presentations
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Signal peptide prediction: from plain neural networks to language models
Henrik Nielsen (Guest lecturer)
24 Jun 2021Activity: Talks and presentations › Conference presentations
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Learning the Language of Life
Henrik Nielsen (Guest lecturer), Jose Juan Almagro Armenteros (Guest lecturer), Alexander Rosenberg Johansen (Guest lecturer) & Ole Winther (Guest lecturer)
27 Nov 2020Activity: Talks and presentations › Conference presentations
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Learning the language of life
Jose Juan Almagro Armenteros (Guest lecturer), Henrik Nielsen (Other), Alexander Rosenberg Johansen (Other) & Ole Winther (Other)
25 Jul 2019Activity: Talks and presentations › Conference presentations
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The Bioinformatics and Biosemiotics of Protein Sorting
Henrik Nielsen (Guest lecturer)
18 Jun 2018Activity: Talks and presentations › Conference presentations
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