20122022

Research output per year

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Research Output

  • 31 Journal article
  • 12 Article in proceedings
  • 2 Conference abstract in journal
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Journal article
2020

Comparisons of improved genomic predictions generated by different imputation methods for genotyping by sequencing data in livestock populations

Wang, X., Su, G., Hao, D., Sandø Lund, M. & N. Kadarmideen, H., 2020, In : Journal of Animal Science and Biotechnology. 11, 3, 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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39 Downloads (Pure)

Copy Number Variations and Expression Levels of Guanylate-Binding Protein 6 Gene Associated with Growth Traits of Chinese Cattle

Hao, D., Wang, X., Thomsen, B., Kadarmideen, H., Wang, X., Lan, X., Huang, Y., Qi, X. & Chen, H., 2020, In : Animals. 10, 4, 17 p., 566.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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25 Downloads (Pure)

Differential impacts of late gestational over-and undernutrition on adipose tissue traits and associated visceral obesity risk upon exposure to a postnatal high-fat diet in adolescent sheep

Khanal, P., Pandey, D., Binti Ahmad, S., Safayi, S., Kadarmideen, H. N. & Nielsen, M. O., 2020, In : Physiological Reports. 8, 3, 21 p., e14359.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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35 Downloads (Pure)

Genome-Wide Epistatic Interaction Networks Affecting Feed Efficiency in Duroc and Landrace Pigs

Banerjee, P., Carmelo, V. A. O. & N. Kadarmideen, H., 2020, In : Frontiers in Genetics. 11, 121.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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28 Downloads (Pure)

Identification of Differentially Expressed Gene Transcripts in Porcine Endometrium during Early Stages of Pregnancy

Pierzchała, M., Pierzchała, D., Ogłuszka, M., Poławska, E., Blicharski, T., Roszczyk, A., Nawrocka, A., Urbański, P., Stepanow, K., Ciepłoch, A., Korwin-Kossakowska, A., F.W. te Pas, M., Slaska, B., Buszewska-Forajta, M., M. Jaśkowski, J., Sachajko, M., Herudzińska, M., M. Jaśkowski, B., Niżański, W., Fraser, L. & 3 others, Czarnik, U., N. Kadarmideen, H. & S. Pareek, C., 2020, In : Life. 10, 33 p., 68.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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7 Downloads (Pure)
Open Access
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7 Downloads (Pure)

Metabolomic networks and pathways associated with feed efficiency and related-traits in Duroc and Landrace pigs

Carmelo, V. A. O., Banerjee, P., da Silva Diniz, W. J. & Kadarmideen, H. N., 2020, In : Scientific Reports. 10, 1, 14 p., 255.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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34 Downloads (Pure)
2019

An Epigenome-Wide DNA Methylation Map of Testis in Pigs for Study of Complex Traits

Wang, X. & Kadarmideen, H., 2019, In : Frontiers in Genetics. 10, 13 p., 405.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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167 Downloads (Pure)

Characterization of eQTLs associated with androstenone by RNA sequencing in porcine testis

Drag, M. H., Kogelman, L. J. A., Maribo, H., Meinert, L., Thomsen, P. D. & Kadarmideen, H. N., 1 Oct 2019, In : Physiological Genomics. 51, 10, p. 488-499

Research output: Contribution to journalJournal articleResearchpeer-review

Detection of co-expressed pathway modules associated with mineral concentration and meat quality in Nelore cattle

Diniz, W. J. S., Mazzoni, G., Coutinho, L. L., Banerjee, P., Geistlinger, L., Cesar, A. S. M., Bertolini, F., Afonso, J., de Oliveira, P. S. N., Tizioto, P. C., Kadarmideen, H. & Regitano, L. C. A., 2019, In : Frontiers in Genetics. 10, 12 p., 210.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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360 Downloads (Pure)

Genome-wide DNA methylation analysis using next-generation sequencing to reveal candidate genes responsible for boar taint in pigs

Wang, X. & Kadarmideen, H. N., 1 Jan 2019, In : Animal Genetics. 50, p. 644-59

Research output: Contribution to journalJournal articleResearchpeer-review

Genomic analyses suggest adaptive differentiation of Northern European native cattle breeds

Stronen, A. V., Pertoldi, C., Iacolina, L., Kadarmideen, H. N. & Kristensen, T. N., 2019, In : Evolutionary Applications. 12, 6, p. 1096-1113

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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255 Downloads (Pure)

Improving genomic predictions by correction of genotypes from genotyping by sequencing in livestock populations

Wang, X., Lund, M. S., Ma, P., Janss, L., Kadarmideen, H. & Su, G., 2019, In : Journal of Animal Science and Biotechnology. 10, 10 p., 8.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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235 Downloads (Pure)

Maternal and fetal genetic effects on birth weight and their relevance to cardio-metabolic risk factors

Warrington, N. M., Beaumont, R. N., Horikoshi, M., Day, F. R., Helgeland, Ø., Laurin, C., Bacelis, J., Peng, S., Hao, K., Feenstra, B., Wood, A. R., Mahajan, A., Tyrrell, J., Robertson, N. R., Rayner, N. W., Qiao, Z., Moen, G-H., Vaudel, M., Marsit, C. J., Chen, J. J. J. & 189 others, Nodzenski, M., Schnurr, T. M., Zafarmand, M. H., Bradfield, J. P., Grarup, N., Kooijman, M. N., Li-Gao, R., Geller, F., Ahluwalia, T. S., Paternoster, L., Rueedi, R., Huikari, V., Hottenga, J-J., Lyytikäinen, L-P., Cavadino, A., Metrustry, S., Cousminer, D. L., Wu, Y., Thiering, E., Wang, C. A., Have, C. T., Vilor-Tejedor, N., Joshi, P. K., Painter, J. N., Ntalla, I., Myhre, R., Pitkänen, N., van Leeuwen, E. M., Joro, R., Lagou, V., Richmond, R. C., Espinosa, A., Barton, S. J., Inskip, H. M., Holloway, J. W., Santa-Marina, L., Estivill, X., Ang, W., Marsh, J. A., Reichetzeder, C., Marullo, L., Hocher, B., Lunetta, K. L., Murabito, J. M., Relton, C. L., Kogevinas, M., Chatzi, L., Allard, C., Bouchard, L., Hivert, M-F., Zhang, G., Muglia, L. J., Heikkinen, J., Consortium, EGG., Morgen, C. S., van Kampen, A. H. C., van Schaik, B. D. C., Mentch, F. D., Langenberg, C., Luan, J., Scott, R. A., Zhao, J. H., Hemani, G., Ring, S. M., Bennett, A. J., Gaulton, K. J., Fernandez-Tajes, J., van Zuydam, N. R., Medina-Gomez, C., de Haan, H. G., Rosendaal, F. R., Kutalik, Z., Marques-Vidal, P., Das, S., Willemsen, G., Mbarek, H., Müller-Nurasyid, M., Standl, M., Appel, E. V. R., Fonvig, C. E., Trier, C., van Beijsterveldt, C. E. M., Murcia, M., Bustamante, M., Bonas-Guarch, S., Hougaard, D. M., Mercader, J. M., Linneberg, A., Schraut, K. E., Lind, P. A., Medland, S. E., Shields, B. M., Knight, B. A., Chai, J-F., Panoutsopoulou, K., Bartels, M., Sánchez, F., Stokholm, J., Torrents, D., Vinding, R. K., Willems, S. M., Atalay, M., Chawes, B. L., Kovacs, P., Prokopenko, I., Tuke, M. A., Yaghootkar, H., Ruth, K. S., Jones, S. E., Loh, P-R., Murray, A., Weedon, M. N., Tönjes, A., Stumvoll, M., Michaelsen, K. F., Eloranta, A-M., Lakka, T. A., van Duijn, C. M., Kiess, W., Körner, A., Niinikoski, H., Pahkala, K., Raitakari, O. T., Jacobsson, B., Zeggini, E., Dedoussis, G. V., Teo, Y-Y., Saw, S-M., Montgomery, G. W., Campbell, H., Wilson, J. F., Vrijkotte, T. G. M., Vrijheid, M., de Geus, E. J. C. N., Hayes, M. G., Kadarmideen, H. N., Holm, J-C., Beilin, L. J., Pennell, C. E., Heinrich, J., Adair, L. S., Borja, J. B., Mohlke, K. L., Eriksson, J. G., Widén, E. E., Hattersley, A. T., Spector, T. D., Kähönen, M., Viikari, J. S., Lehtimäki, T., Boomsma, D. I., Sebert, S., Vollenweider, P., Sørensen, T. I. A., Bisgaard, H. F., Bønnelykke, K., Murray, J. C., Melbye, M., Nohr, E. A., Mook-Kanamori, D. O., Rivadeneira, F., Hofman, A., Felix, J. F., Jaddoe, V. W. V., Hansen, T., Pisinger, C., Vaag, A. A., Pedersen, O., Uitterlinden, A. G., Järvelin, M-R., Power, C., Hyppönen, E., Scholtens, D. M., Lowe, W. L., Davey Smith, G., Timpson, N. J., Morris, A. P., Wareham, N. J., Hakonarson, H., Grant, S. F. A., Frayling, T. M., Lawlor, D. A., Njølstad, P. R., Johansson, S., Ong, K. K., McCarthy, M. I., Perry, J. R. B., Evans, D. M. & Freathy, R. M., 2019, In : Nature Genetics. 51, 5, p. 804-814

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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86 Downloads (Pure)

Metabolomics Analyses in High-Low Feed Efficient Dairy Cows Reveal Novel Biochemical Mechanisms and Predictive Biomarkers

Wang, X. & Kadarmideen, H. N., 2019, In : Metabolites. 9, 7, 16 p., 151.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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99 Downloads (Pure)
2018

An adult-based insulin resistance genetic risk score associates with insulin resistance, metabolic traits and altered fat distribution in Danish children and adolescents who are overweight or obese

Graae, A-S., Hollensted, M., Kloppenborg, J. T., Mahendran, Y., Schnurr, T. M., Appel, E. V. R., Rask, J., Nielsen, T. R. H., Johansen, M. Ø., Linneberg, A., Jørgensen, M. E., Grarup, N., Kadarmideen, H. N., Holst, B., Pedersen, O., Holm, J-C. & Hansen, T., 2018, In : Diabetologia. 61, 8, p. 1769-1779 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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202 Downloads (Pure)

Gene co-expression networks from RNA sequencing of dairy cattle identifies genes and pathways affecting feed efficiency

Salleh, S. M., Mazzoni, G., Løvendahl, P. & Kadarmideen, H., 2018, In : B M C Bioinformatics. 19, 15 p., 513.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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194 Downloads (Pure)

Gene co-expression networks in liver and muscle transcriptome reveal sex-specific gene expression in lambs fed with a mix of essential oils

Sabino, M., Carmelo, V. A. O., Mazzoni, G., Cappelli, K., Capomaccio, S., Ajmone-Marsan, P., Verini-Supplizi, A., Trabalza-Marinucci, M. & Kadarmideen, H. N., 2018, In : B M C Genomics. 19, 1, 15 p., 236.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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446 Downloads (Pure)

Genetic Susceptibility for Childhood BMI has no Impact on Weight Loss Following Lifestyle Intervention in Danish Children: Childhood Obesity Gene Risk: Intervention Outcome

Hollensted, M., Fogh, M., Schnurr, T. M., Kloppenborg, J. T., Have, C. T., Ruest Haarmark Nielsen, T., Rask, J., Asp Vonsild Lund, M., Frithioff-Bøjsøe, C., Østergaard Johansen, M., Vincent Rosenbaum Appel, E., Mahendran, Y., Grarup, N., Kadarmideen, H. N., Pedersen, O., Holm, J-C. & Hansen, T., 2018, In : Obesity. 26, 12, p. 1915-1922

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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52 Downloads (Pure)

Identification of Expression QTLs Targeting Candidate Genes for Residual Feed Intake in Dairy Cattle Using Systems Genomics

Salleh, MS., Mazzoni, G., Nielsen, M. O., Løvendahl, P. & Kadarmideen, H., 2018, In : Journal of Genetics and Genome Research. 5, 1, 14 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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269 Downloads (Pure)

Simulated physiological oocyte maturation has side effects on bovine oocytes and embryos

Razza, E. M., Pedersen, H. S., Stroebech, L., Fontes, P. K., Kadarmideen, H. N., Callesen, H., Pihl, M., Nogueira, M. F. G. & Hyttel, P., 2018, In : Journal of Assisted Reproduction and Genetics. 36, 3, p. 413–424

Research output: Contribution to journalJournal articleResearchpeer-review

Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs

Drag, M., Hansen, M. B. & Kadarmideen, H. N., 2018, In : P L o S One. 13, 2, 30 p., e0192673.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
236 Downloads (Pure)

Transcription factor co-expression networks of adipose RNA-Seq data reveal regulatory mechanisms of obesity

Skinkyte-Juskiene, R., Kogelman, L. J. A. & Kadarmideen, H. N., 1 May 2018, In : Current Genomics. 19, 4, p. 289-299

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
96 Downloads (Pure)

WISH-R- a fast and efficient tool for construction of epistatic networks for complex traits and diseases

Carmelo, V. A. O., Kogelman, L. J. A., Madsen, M. B. & Kadarmideen, H. N., 2018, In : B M C Bioinformatics. 19, 7 p., 277.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
209 Downloads (Pure)
2017

A genome-wide association study of thyroid stimulating hormone and free thyroxine in Danish children and adolescents

Nielsen, T. R. H., Appel, E. V. R., Svendstrup, M., Ohrt, J. D., Dahl, M., Fonvig, C. E., Hollensted, M., Have, C. T., Kadarmideen, H. N., Pedersen, O., Hansen, T., Holm, J-C., Grarup, N. & Meyre, D. (ed.), 2017, In : P L o S One. 12, 3, e0174204.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
229 Downloads (Pure)

Differential expression and co-expression gene networks reveal candidate biomarkers of boar taint in non-castrated pigs

Drag, M., Skinkyté-Juskiené, R., Do, D. N., Kogelman, L. J. A. & Kadarmideen, H. N., 2017, In : Scientific Reports. 7, 1, 18 p., 12205.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
235 Downloads (Pure)

Genomic study and Medical Subject Headings enrichment analysis of early pregnancy rate and antral follicle numbers in Nelore heifers

Oliveira Junior, G. A., Perez, B. C., Cole, J. B., Santana, M. H. A., Silveira, J., Mazzoni, G., Ventura, R. V., Santana Junior, M. L., Kadarmideen, H., Garrick, D. J. & Ferraz, J. B. S., 2017, In : Journal of Animal Science. 95, 11, p. 4796-4812 17 p.

Research output: Contribution to journalJournal articleResearchpeer-review

39 Downloads (Pure)

Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cell transcriptomics

Mazzoni, G., Salleh, S. M., Freude, K., Pedersen, H. S., Stroebech, L., Callesen, H., Hyttel, P., Kadarmideen, H. N. & Óvilo, C. (ed.), 2017, In : P L o S One. 12, 4, 27 p., e0175464.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
260 Downloads (Pure)

RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high- and low-residual feed intake in Nordic dairy cattle

Salleh, M. S., Mazzoni, G., Höglund, J. K., Olijhoek, D. W., Lund, P., Løvendahl, P. & Kadarmideen, H., 2017, In : B M C Genomics. 18, 1, 17 p., 258.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
328 Downloads (Pure)

Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology

Pareek, C. S., Błaszczyk, P., Dziuba, P., Czarnik, U., Fraser, L., Sobiech, P., Pierzchała, M., Feng, Y., Kadarmideen, H. N. & Kumar, D., 2017, In : P L o S One. 12, 2, 26 p., e0172687.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
304 Downloads (Pure)