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  • 2024

    100 ancient genomes show repeated population turnovers in Neolithic Denmark

    Allentoft, M. E., Sikora, M., Fischer, A., Sjögren, K. G., Ingason, A., Macleod, R., Rosengren, A., Schulz Paulsson, B., Jørkov, M. L. S., Novosolov, M., Stenderup, J., Price, T. D., Fischer Mortensen, M., Nielsen, A. B., Ulfeldt Hede, M., Sørensen, L., Nielsen, P. O., Rasmussen, P., Jensen, T. Z. T., Refoyo-Martínez, A., & 48 othersIrving-Pease, E. K., Barrie, W., Pearson, A., Sousa da Mota, B., Demeter, F., Henriksen, R. A., Vimala, T., McColl, H., Vaughn, A., Vinner, L., Renaud, G., Stern, A., Johannsen, N. N., Ramsøe, A. D., Schork, A. J., Ruter, A., Gotfredsen, A. B., Henning Nielsen, B., Brinch Petersen, E., Kannegaard, E., Hansen, J., Buck Pedersen, K., Pedersen, L., Klassen, L., Meldgaard, M., Johansen, M., Uldum, O. C., Lotz, P., Lysdahl, P., Bangsgaard, P., Petersen, P. V., Maring, R., Iversen, R., Wåhlin, S., Anker Sørensen, S., Andersen, S. H., Jørgensen, T., Lynnerup, N., Lawson, D. J., Rasmussen, S., Korneliussen, T. S., Kjær, K. H., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Kristiansen, K. & Willerslev, E., 2024, In: Nature. 625, 7994, p. 329-337

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  • Population genomics of post-glacial western Eurasia

    Allentoft, M. E., Sikora, M., Refoyo-Martínez, A., Irving-Pease, E. K., Fischer, A., Barrie, W., Ingason, A., Stenderup, J., Sjögren, K. G., Pearson, A., Sousa da Mota, B., Schulz Paulsson, B., Halgren, A., Macleod, R., Jørkov, M. L. S., Demeter, F., Sørensen, L., Nielsen, P. O., Henriksen, R. A., Vimala, T., & 144 othersMcColl, H., Margaryan, A., Ilardo, M., Vaughn, A., Fischer Mortensen, M., Nielsen, A. B., Ulfeldt Hede, M., Johannsen, N. N., Rasmussen, P., Vinner, L., Renaud, G., Stern, A., Jensen, T. Z. T., Scorrano, G., Schroeder, H., Lysdahl, P., Ramsøe, A. D., Skorobogatov, A., Schork, A. J., Rosengren, A., Ruter, A., Outram, A., Timoshenko, A. A., Buzhilova, A., Coppa, A., Zubova, A., Silva, A. M., Hansen, A. J., Gromov, A., Logvin, A., Gotfredsen, A. B., Henning Nielsen, B., González-Rabanal, B., Lalueza-Fox, C., McKenzie, C. J., Gaunitz, C., Blasco, C., Liesau, C., Martinez-Labarga, C., Pozdnyakov, D. V., Cuenca-Solana, D., Lordkipanidze, D. O., En’shin, D., Salazar-García, D. C., Price, T. D., Borić, D., Kostyleva, E., Veselovskaya, E. V., Usmanova, E. R., Cappellini, E., Brinch Petersen, E., Kannegaard, E., Radina, F., Eylem Yediay, F., Duday, H., Gutiérrez-Zugasti, I., Merts, I., Potekhina, I., Shevnina, I., Altinkaya, I., Guilaine, J., Hansen, J., Aura Tortosa, J. E., Zilhão, J., Vega, J., Buck Pedersen, K., Tunia, K., Zhao, L., Mylnikova, L. N., Larsson, L., Metz, L., Yepiskoposyan, L., Pedersen, L., Sarti, L., Orlando, L., Slimak, L., Klassen, L., Blank, M., González-Morales, M., Silvestrini, M., Vretemark, M., Nesterova, M. S., Rykun, M., Rolfo, M. F., Szmyt, M., Przybyła, M., Calattini, M., Sablin, M., Dobisíková, M., Meldgaard, M., Johansen, M., Berezina, N., Card, N., Saveliev, N. A., Poshekhonova, O., Rickards, O., Lozovskaya, O. V., Gábor, O., Uldum, O. C., Aurino, P., Kosintsev, P., Courtaud, P., Ríos, P., Mortensen, P., Lotz, P., Persson, P., Bangsgaard, P., de Barros Damgaard, P., Vang Petersen, P., Martinez, P. P., Włodarczak, P., Smolyaninov, R. V., Maring, R., Menduiña, R., Badalyan, R., Iversen, R., Turin, R., Vasilyev, S., Wåhlin, S., Borutskaya, S., Skochina, S., Sørensen, S. A., Andersen, S. H., Jørgensen, T., Serikov, Y. B., Molodin, V. I., Smrcka, V., Merts, V., Appadurai, V., Moiseyev, V., Magnusson, Y., Kjær, K. H., Lynnerup, N., Lawson, D. J., Sudmant, P. H., Rasmussen, S., Korneliussen, T. S., Durbin, R., Nielsen, R., Delaneau, O., Werge, T., Racimo, F., Kristiansen, K. & Willerslev, E., 2024, In: Nature. 625, 7994, p. 301-311

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  • 2023

    Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains

    Hodgins, H. P., Chen, P., Lobb, B., Wei, X., Tremblay, B. J. M., Mansfield, M. J., Lee, V. C. Y., Lee, P. G., Coffin, J., Duggan, A. T., Dolphin, A. E., Renaud, G., Dong, M. & Doxey, A. C., 2023, In: Nature Communications. 14, 1, 15 p., 5475.

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  • Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

    Lien, A., Legori, L. P., Kraft, L., Sackett, P. W. & Renaud, G., 2023, In: Frontiers in Bioinformatics. 3, 18 p., 1260486.

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  • euka: Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs

    Vogel, N. A., Rubin, J. D., Swartz, M., Vlieghe, J., Sackett, P. W., Pedersen, A. G., Pedersen, M. W. & Renaud, G., 2023, In: Methods in Ecology and Evolution. 14, 11, p. 2717-2727

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  • HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph

    Rubin, J. D., Vogel, N. A., Gopalakrishnan, S., Sackett, P. W. & Renaud, G., 2023, In: PLOS Computational Biology. 19, 6, 27 p., e1011148.

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  • The ancestry and geographical origins of St Helena's liberated Africans

    Sandoval-Velasco, M., Jagadeesan, A., Ramos-Madrigal, J., Ávila-Arcos, M. C., Fortes-Lima, C. A., Watson, J., Johannesdóttir, E., Cruz-Dávalos, D. I., Gopalakrishnan, S., Moreno-Mayar, J. V., Niemann, J., Renaud, G., Robson Brown, K. A., Bennett, H., Pearson, A., Helgason, A., Gilbert, M. T. P. & Schroeder, H., 2023, In: American Journal of Human Genetics. 110, 9, p. 1590-1599

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  • 2022

    Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

    Thuesen, N. H., Klausen, M. S., Gopalakrishnan, S., Trolle, T. & Renaud, G., 2022, In: Frontiers in Immunology. 13, 15 p., 987655.

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  • Unsupervised detection of fragment length signatures of circulating tumor DNA using non-negative matrix factorization

    Renaud, G., Norgaard, M., Lindberg, J., Gronberg, H., De Laere, B., Jensen, J. B., Borre, M., Andersen, C. L., Sorensen, K. D., Maretty, L. & Besenbacher, S., 2022, In: eLife. 11, 15 p., e71569.

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  • 2020

    Population genomics of the Viking world

    Margaryan, A., Lawson, D. J., Sikora, M., Racimo, F., Rasmussen, S., Moltke, I., Cassidy, L. M., Jørsboe, E., Ingason, A., Pedersen, M. W., Korneliussen, T., Wilhelmson, H., Buś, M. M., de Barros Damgaard, P., Martiniano, R., Renaud, G., Bhérer, C., Moreno-Mayar, J. V., Fotakis, A. K., Allen, M., & 70 othersAllmäe, R., Molak, M., Cappellini, E., Scorrano, G., McColl, H., Buzhilova, A., Fox, A., Albrechtsen, A., Schütz, B., Skar, B., Arcini, C., Falys, C., Jonson, C. H., Błaszczyk, D., Pezhemsky, D., Turner-Walker, G., Gestsdóttir, H., Lundstrøm, I., Gustin, I., Mainland, I., Potekhina, I., Muntoni, I. M., Cheng, J., Stenderup, J., Ma, J., Gibson, J., Peets, J., Gustafsson, J., Iversen, K. H., Simpson, L., Strand, L., Loe, L., Sikora, M., Florek, M., Vretemark, M., Redknap, M., Bajka, M., Pushkina, T., Søvsø, M., Grigoreva, N., Christensen, T., Kastholm, O., Uldum, O., Favia, P., Holck, P., Sten, S., Arge, S. V., Ellingvåg, S., Moiseyev, V., Bogdanowicz, W., Magnusson, Y., Orlando, L., Pentz, P., Jessen, M. D., Pedersen, A., Collard, M., Bradley, D. G., Jørkov, M. L., Arneborg, J., Lynnerup, N., Price, N., Gilbert, M. T. P., Allentoft, M. E., Bill, J., Sindbæk, S. M., Hedeager, L., Kristiansen, K., Nielsen, R., Werge, T. & Willerslev, E., 2020, In: Nature. 585, 7825, p. 390-396

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