Personal profile
Profile
The global spread of infectious pathogenic bacteria, including
those resistant to antimicrobial agents, is one of the greatest
human health problems.
My research has primarily targeted the association between use of
antimicrobial agents to farm animals and the emergence and spread
of antimicrobial resistance including the human health
consequences.
It has become increasingly clear that bacteria do not respect traditional borders and with the increased globalisation a problem in one country has become a problem for all countries. Thus, the research has increasingly been directed towards global spread of initially foodborne, but now also other pathogenic bacteria.
The research has contributed to the internatioanl standards for detection and monitoring of antimicrobial resistance in food borne pathogens and had major influence on the ways antimicrobial agents are used worldwide.
The global focus is also documented by the fact that the research has been conducted with more than 400 co-authors, in more than 135 institutions in more than 35 countries. Furthermore, DTU-Food has partly based on the research been appointed WHO and EU reference laboratory for antimicrobial resistance in foodborne pathogens.
Other information
SÆRLIGE UDNÆVNELSER:Leder af Community Reference Laboratory for Antimicrobial Resistance for EU, 2006 -
Leder af WHO Collaborating Centre for Antimicrobial Resistance among Food borne pathogens, 2006 -
KOMMITEER MV.:
Medlem af NCCLS working group on non-therapeutic use of antimicrobials, 1997.
Formand i Danmarks Mikrobiologiske Selskab, 1997 - 2003.
NCCLS Working Group for Susceptibility testing of Campylobacter, 1998 - 2002.
Medlem af Ad Hoc Working group on antimicrobial resistance under the Safety Working Party, European Medicine Agency (EMEA), EU, 2000-2002.
Co-ordinator for WHO Global Salmonella Survey, External Quality Assurance System, 2000 - 2006.
Advicer for the Taiwanese government on antimicrobial resistance among food animals, juni 2000.
Ekspert vidne for EU-domstolen i forbindelse med sag omkring anvendelse af virginiamycin som vækstfremmer, juli 2001.
Ekspert vidne for Food and Drug Administration, USA i relation til domstolshøring omkring anvendelse af fluoroquinoloner til fjerkræ, 2002.
Medlem af tilsætningsstofudvalget, 2003 - 2008.
Bestyrelsesmedlem i Danmarks Mikrobiologiske Selskab 2003 - 2005.
Scientific Advisory Board of the EU funded Strategic Council on Resistance in Europe, 2003 - 2005.
Member of scientific advisory group on antimicrobial resistance (SAGAM) for the CVMP, European Medicine Agency (EMEA), EU, 2004-2007.
Medlem WG on antimicrobial resistance, Biohazard panel, EFSA, EU. 2007-2008.
Medlem WG on Developing Harmonized Schemes for Monitoring Antimicrobial Resistance in Zoonotic Agents, Biohazard panel, EFSA, EU. 2007-
Secretary, 2nd WHO expert meeting on critically important antimicrobials. Copenhagen May 29-31, 2007.
EU-kommissionens ekspert på The First Session of the Codex ad hoc Intergovernmental Task Force on Antimicrobial Resistance, Seoul, Korea, October 23-27, 2007.
Invited expert for the Joint FAO/WHO/OIE expert meeting on critical important antimicorbials, Rome, Italy, 26-30 November 2007.
Member of the WG on Antimicrobial resistance in 4 biocide substances, Biohazard panel, EFSA, EU, 2008.
Member of the ESCO Working Group emerging risks. EFSA, EU, 2008-.
MEDLEM AF FORSNINGSFINANCIELLE UDVALG, ETC.:
Medlem af programkomitéen for Større Tværgående Forskergrupper, Videnskabsministeriet, 2003 - 2004.
Tilforordnet i Forskningsudvalget for kvæg, 2003 - 2006.
Medlem af bestyrelsen for Mejeribrugets forskningsfond, 2004 - 2008.
Medlem af skrivegruppen for Fødevaresikkerhed og det veterinære beredskab, Fødevareforskningsprogrammet 2007, Direktoratet for Fødevareerhverv, Ministeriet for Fødevarer, Landbrug og Fiskeri.
Formand for Fødevareinstituttets Forsknings-, udviklings- og innovationsudvalg, 2007-2008.
EDITOR OG EDITORIAL BOARDS:
Editorial Board of Microbial Drug Resistance, 1999 -.
Editorial Board of Veterinary Microbiology, 2000 - 2008.
Editorial Board of Foodborne Pathogens & Disease, 2003 -.
Editor of Antimicrobial resistance in bacteria of animal origin ASM Press, Washington DC, USA (ISBN 1-55581-306-2), 2006.
STØRRE UNDERVISNINGS- OG UDDANNELSESOPGAVER:
Censor in Veterinary Microbiology at the Royal Veterinary and Agricultural University, since 1999 (approx. 30 veterinary students for oral examination, 5-8 master thesis and 1-2 PhD thesis per year).
Chief trainer and responsible for development of the course curriculum and examination for ”WHO training course on salmonellosis and antimicrobial resistance in food pathogens”. Heraklion, Crete, Greece, 3-8 juli 2000.
Chief trainer and responsible for development of the course curriculum and examination for ”WHO training course on campylobacteriosis and antimicrobial resistance”. Bangkok, Thailand, 23-28 jan. 2001.
Ekstern Censor i kemi på Danmarks Tekniske Universitet, 2001.
Ekstern censor i Folkesundhedsvidenskab på Københavns Universitet, 2001.
Underviser i ”Microbiological risk in food” på International Master program ”Nutrition and safety along the food production chain”, University of Bologna, Marts 2003.
Ansvarlig for planlægning og gennemførsel af tre moduler af tre timer om Mastitis diagnostik for dyrlæger, November 2005.
Ansvarlig for “Study visit on antimicrobial resistance”. One week training in susceptibility testing for three participants, Sep. 2007.
Ansvarlig for “Training course in antimicrobial susceptibility testing”. A one week training course for 15 participants conducted as part of the Community Reference Laboratory for Antimicrobial Resistance, March 2008.
PRISER, PRÆMIER, UDNÆVNELSER:
1997: Belønning fra C. O. Jensens Mindefond for arbejde vedrørende antibiotikaresistens og molekylære typningsmetoder.
2003: The 2003 APUA Leadership Award in recognition of investigations of the feasibility of food animal production without the use of antibiotic growth promoters.
2008: Advisory Committee of National Veterinary Research and Quarantine Service, Republic of Korea (Jan. 2008-Dec. 2009).
International Erfaring:
Aug. 1993 til Marts 1994, gæsteforsker ved Center for Mastitis Research, Department of Veterinary Science, Pennsylvania State University, USA.
Research areas
Siden 1995 leder af antibiotikaresistensgruppen I DTU Fødevareinstituttet. Jeg har siden jeg blev færdig som dyrlæge arbejdet med mange forskellige aspekter af mikrobiologi og epidemiologi. Dette har inkluderet arbejde med såvel dyre- og human-patogene bakterier. I de seneste 13 år har forskningsaktiviteterne primært været fokuseret på overvågning og spredning af antibiotikaresistens og karakterisering af resistente bakterier og resistensgener, samt optimeret anvendelse af antibiotika. Det primære fokus har været på fødevarebårne patogener, specielt i et globalt perspektiv, men er inden for de sidste år udvidet til andre problemstillinger. Jeg er ansvarlig for resistensbestemmelser i forbindelse med monitoreringen af antibiotikaresistens blandt dyr i Danmark. Jeg har været eller er projektleder af adskillige nationale projekter som involverer adskillige institutioner herunder koordinator af en EU-finansieret concerted action som involverede 19 laboratorier i 18 europæiske lande. I alt har jeg hjemskaffet fondsmidler for >60 mill. Dkr.Fra 2006 leder af såvel WHO Collaborating Centre for Antimicrobial Resistance among Foodborne Pathogens og Community Reference Laboratory for Antimicrobial Resistance among bacteria from animals and food. Jeg har holdt >200 foredrag på konferencer, kurser og i andre sammenhænge. Vejleder for 8 ph.d.-studerende og 7 specialestuderende, samt adskillige udenlandske gæsteforskere. Forfatter af 148 originale artikler i internationale peer-reviewed tidsskrifter, 48 som førsteforfatter, 54 som sidsteforfatter og 117 om forskellige aspekter af antibiotikaresistens. Forfatter af 35 internationale oversigtsartikler eller bogkapitler, alle om antibiotikaresistens og 20 som førsteforfatter. Forfatter af 56 andre artikler, 35 som førsteforfatter og 46 om antibiotikaresistens.
Education/Academic qualification
Dr. med., KVL
… → 2000
Ph.d., KVL
… → 1996
Cand.med.vet., KVL
… → 1992
Keywords
- User defined:
- Antimicrobial resistance
- Global monitoring
- Molecular epidemiology
- Global Epidemiology of Salmonella
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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SDG 2 Zero Hunger
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SDG 3 Good Health and Well-being
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SDG 11 Sustainable Cities and Communities
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SDG 12 Responsible Consumption and Production
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SDG 13 Climate Action
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SDG 14 Life Below Water
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SDG 15 Life on Land
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SDG 16 Peace, Justice and Strong Institutions
Fingerprint
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Collaborations and top research areas from the last five years
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Acinetobacter enrichment shapes composition and function of the bacterial microbiota of field-grown tomato plants
Robertson, S., Mosca, A., Ashraf, S., Corral, A., Alegria Terrazas, R., Arnton, C., Thorpe, P., Morris, J., Hedley, P. E., Babbi, G., Savojardo, C., Martelli, P. L., Møller, F. D., Nielsen, H. N., Leekitcharoenphon, P., Aarestrup, F. M., Halder, R., Laczny, C. C., Wilmes, P. & Pietrantonio, L. & 4 others, , 2026, In: Eukaryotic Cell. 11, 2, 21 p., e0084225.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile12 Downloads (Orbit) -
A comprehensive database for biological data derived from sewage in five European cities
Becsei, Á., Munk, P., Fuschi, A., Otani, S., Stéger, J., Visontai, D., Papp, K., Brinch, C., Kant, R., Weinstein, I., Vapalahti, O., de Graaf, M., Schapendonk, C. M. E., Roelfsema, J., van den Beld, M., Pijnacker, R., Franz, E., Alba, P., Battisti, A. & De Cesare, A. & 15 others, , 2026, In: Database: The Journal of Biological Databases and Curation. 2026, 7 p., baaf089.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile26 Downloads (Orbit) -
Aquaculture shapes antibiotic resistance in Mediterranean gilthead sea bream farming: From hatcheries to offshore cages
Basili, M., Nikouli, E., Møller, F. D., Kormas, K. A., Luna, G. M., Tolosa-Enguís, V., Rodriguez-Ruano, S. M., Sanz, Y., Candela, M., Quero, G. M., Aarestrup, F. M. & Leekitcharoenphon, P., 2026, In: Aquaculture. 613, 10 p., 743290.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile136 Downloads (Orbit) -
Artificial intelligence and One Health: potential for spillover prediction?
Koopmans, M., Csabai, I., Remondini, D., Snary, E. & Aarestrup, F., 2026, In: The Lancet Infectious Diseases. 26, 3, p. 219-220 2 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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Artificial intelligence and spillover prediction: aligning innovation with empirical reality in One Health surveillance – Authors' reply
Aarestrup, F. & Koopmans, M., 2026, In: Lancet Infectious Diseases. 26, 1, p. e7 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
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Artificial Intelligence for Smart Food Regulation Enhancing Compliance and Safety in Denmark¿s Small-Scale
Pedersen, M. B. (PhD Student), Njage, P. M. K. (Main Supervisor), Aarestrup, F. M. (Supervisor) & Leekitcharoenphon, P. S. (Supervisor)
01/01/2026 → 31/12/2028
Project: PhD
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Antimicrobial use in conventional animal production, selection for antimicrobial resistance genes (ARGs) in animal microbiomes and the subsequent risk to humans
Nielsen, J. O. (PhD Student), Vigre, H. (Main Supervisor), Aarestrup, F. M. (Supervisor) & Brinch, C. (Supervisor)
01/08/2025 → 31/07/2028
Project: PhD
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Epidemiology, drivers and environmental surveillance of gastro-intestinal infections and antimi-crobial resistance in refugee and rural populations
Ndoyi, R. (PhD Student), Njage, P. M. K. (Main Supervisor) & Aarestrup, F. M. (Supervisor)
01/12/2024 → 30/11/2027
Project: PhD
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Functional Microbiome of Africa
Jensen, E. E. B. (PhD Student), Aarestrup, F. M. (Main Supervisor) & Otani, S. (Supervisor)
01/03/2024 → 28/02/2027
Project: PhD
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Global Surveillance, Antimicrobial Resistance, and Phylogeny of Bacterial Isolates
Birkedahl, L. E. K. (PhD Student), Aarestrup, F. M. (Main Supervisor) & Otani, S. (Supervisor)
01/03/2023 → 29/05/2029
Project: PhD
Activities
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Multi drug resistant Salmonella Concord in adoptee from Ethiopia A collaborative international investigation
Aarestrup, F. M. (Speaker)
15 Jun 2008 → 18 Jun 2008Activity: Talks and presentations › Conference presentations
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Using free-cost spatial technology as a tool for assessment of antimicrobial consumption data and spatial distribution of pig herds
Aarestrup, F. M. (Speaker)
15 Jun 2008 → 18 Jun 2008Activity: Talks and presentations › Conference presentations
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Diversity of tetracycline resistance genes and mobile elements in enterococci and staphylococci from human and animals
Aarestrup, F. M. (Speaker)
15 Jun 2008 → 18 Jun 2008Activity: Talks and presentations › Conference presentations
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Antimicrobial resistance: epidemiology and control options: The 4th International meeting on antimicrobial agents in veterinary medicine
Aarestrup, F. M. (Speaker)
24 Aug 2008 → 28 Aug 2008Activity: Talks and presentations › Conference presentations
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In vivo study on selection of ESBL-producing Escherichia coli in the intestinal tract of pigs treated with extended-spectrum cephalosporins
Aarestrup, F. M. (Speaker)
1 Jan 2007 → …Activity: Talks and presentations › Conference presentations
Datasets
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PanRes - Collection of antimicrobial resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 27 Nov 2023
DOI: 10.5281/zenodo.10091602, https://zenodo.org10091602
Dataset
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MetalResistance - Collection of metal resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 31 Aug 2023
DOI: 10.5281/zenodo.8108201, https://zenodo.org/record/8108201
Dataset
Press/Media
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Ny forskning chokerer: Tusindvis af ukendte bakterier i Københavns kloakker
17/09/2024
1 item of Media coverage
Press/Media: Press / Media
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Forskere finder kolera og tusindvis af ukendte bakterier i Københavns kloakker
17/09/2024
1 item of Media coverage
Press/Media: Press / Media
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DTU-professor: Spildevandsovervågning af corona rejser et etisk spørgsmål
12/02/2021
1 item of Media coverage
Press/Media: Press / Media
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