Berith Elkær Knudsen

  1. 2019
  2. Published

    Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries. / Luiken, Roosmarijn E C; Van Gompel, Liese; Munk, Patrick; Sarrazin, Steven; Joosten, Philip; Dorado-García, Alejandro; Borup Hansen, Rasmus; Knudsen, Berith Elkær; Bossers, Alex; Wagenaar, Jaap A; Aarestrup, Frank Møller; Dewulf, Jeroen; Mevius, Dik J; Heederik, Dick J J; Smit, Lidwien A M; Schmitt, Heike; consortium, EFFORT.

    In: Journal of Antimicrobial Chemotherapy, Vol. 74, No. 9, 2019, p. 2596–2604.

    Research output: Contribution to journalJournal article – Annual report year: 2019Researchpeer-review

  3. Published

    The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries. / Van Gompel, Liese; Luiken, Roosmarijn E C; Sarrazin, Steven; Munk, Patrick; Knudsen, Berith Elkær; Hansen, Rasmus B; Bossers, Alex; Aarestrup, Frank Møller; Dewulf, Jeroen; Wagenaar, Jaap A; Mevius, Dik J; Schmitt, Heike; Heederik, Dick J J; Dorado-García, Alejandro; Smit, Lidwien A M; consortium, EFFORT.

    In: Journal of Antimicrobial Chemotherapy, Vol. 74, No. 4, 2019, p. 865-876.

    Research output: Contribution to journalJournal article – Annual report year: 2019Researchpeer-review

  4. 2018
  5. Published

    Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries. / Munk, Patrick; Knudsen, Berith Elkær; Lukjacenko, Oksana; Duarte, Ana Sofia Ribeiro; Van Gompel, Liese; Luiken, Roosmarijn E.C.; Smit, Lidwien A.M.; Schmitt, Heike; Garcia, Alejandro Dorado; Hansen, Rasmus Borup; Petersen, Thomas Nordahl; Bossers, Alex; Ruppé, Etienne; Graveland, Haitske; van Essen, Alieda; Gonzalez-Zorn, Bruno; Moyano, Gabriel; Sanders, Pascal; Chauvin, Claire; David, Julie; Battisti, Antonio; Caprioli, Andrea; Dewulf, Jeroen; Blaha, Thomas; Wadepohl, Katharina; Brandt, Maximiliane; Wasyl, Dariusz; Skarzyńska, Magdalena; Zajac, Magdalena; Daskalov, Hristo; Saatkamp, Helmut W.; Stärk, Katharina D.C.; Lund, Ole; Hald, Tine; Pamp, Sünje Johanna; Vigre, Håkan; Heederik, Dick; Wagenaar, Jaap A.; Mevius, Dik; Møller Aarestrup, Frank ; EFFORT Group.

    In: Nature Microbiology, Vol. 3, No. 8, 01.08.2018, p. 898-908.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  6. 2016
  7. Published
  8. Published

    Impact of Sample Type and DNA Isolation Procedure on Genomic Inference of Microbiome Composition. / Knudsen, Berith Elkær; Bergmark, Lasse; Munk, Patrick; Lukjancenko, Oksana; Priemé, Anders; Aarestrup, Frank Møller; Pamp, Sünje Johanna.

    In: mSystems, Vol. 1, No. 5, e00095-16, 2016.

    Research output: Contribution to journalJournal article – Annual report year: 2016Researchpeer-review

  9. 2015
  10. Aminobacter MSH1-Mineralisation of BAM in Sand-Filters Depends on Biological Diversity. / Ekelund, Flemming; Harder, Christoffer Bugge; Knudsen, Berith Elkær; Aamand, Jens.

    In: PLOS ONE, 2015.

    Research output: Contribution to journalJournal article – Annual report year: 2015Researchpeer-review

  11. Groundwater chemistry determines the prokaryotic community structure of waterworks sand filters. / Alberts, Christian N.; Ellegaard-Jensen, Lea; Harder, Christoffer B.; Rosendahl, Søren; Knudsen, Berith Elkær; Ekelund, Flemming; Aamand, Jens.

    In: Environmental Science & Technology (Washington), 2015.

    Research output: Contribution to journalJournal article – Annual report year: 2015Researchpeer-review

  12. 2014
  13. Fungal-bacterial consortia increase diuron degradation in water-unsaturated systems. / Ellegaard-Jensen, Lea; Knudsen, Berith Elkær; Johansen, Anders; Albers, Christian Nyrop; Aamand, Jens; Rosendahl, Søren.

    In: Science of the Total Environment, Vol. 466-467, 2014, p. 699-705.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  14. Published

    Large-scale bioreactor production of the herbicide-degrading Aminobacter sp. strain MSH1. / Schultz-Jensen, Nadja; Knudsen, Berith Elkær; Frkova, Zuzana; Aamand, Jens; Johansen, Tina; Thykær, Jette; Sørensen, Sebastian R.

    In: Applied Microbiology and Biotechnology, Vol. 98, No. 5, 2014, p. 2335-2344.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  15. 2013
  16. Fungal hyphae stimulate bacterial degradation of 2,6-dichlorobenzamide (BAM). / Knudsen, Berith Elkær; Ellegaard-Jensen, Lea; Albers, Christian Nyrop; Rosendahl, Soren; Aamand, Jens.

    In: Environmental Pollution, Vol. 181, 2013, p. 122-127.

    Research output: Contribution to journalJournal article – Annual report year: 2013Researchpeer-review