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2024
Characterization and Abundance of Plasmid-Dependent Alphatectivirus Bacteriophages
Parra, B., Lutz, V. T., Brøndsted, L., Carmona, J. L., Palomo, A., Nesme, J., Van Hung Le, V., Smets, B. F. & Dechesne, A., 2024, In: Microbial Ecology. 87, 11 p., 85.Research output: Contribution to journal › Journal article › Research › peer-review
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Conjugal plasmid transfer in the plant rhizosphere in the One Health context
Riva, F., Dechesne, A., Eckert, E. M., Riva, V., Borin, S., Mapelli, F., Smets, B. F. & Crotti, E., 2024, In: Frontiers in Microbiology. 15, 11 p., 1457854.Research output: Contribution to journal › Journal article › Research › peer-review
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Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater
Yu, Z., Wang, Q., Pinilla-Redondo, R., Madsen, J. S., Clasen, K. A. D., Ananbeh, H., Olesen, A. K., Gong, Z., Yang, N., Dechesne, A., Smets, B., Nesme, J. & Sørensen, S. J., 2024, In: Ecotoxicology and Environmental Safety. 271, 12 p., 115971.Research output: Contribution to journal › Journal article › Research › peer-review
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Insights into the circular: the cryptic plasmidome and its derived antibiotic resistome in the urban water systems
Yu, Z., He, W., Klincke, F., Madsen, J. S., Kot, W., Hansen, L. H., Quintela-Baluja, M., Balboa, S., Dechesne, A., Smets, B., Nesme, J. & Sørensen, S. J., 2024, In: Environment International. 183, 12 p., 108351.Research output: Contribution to journal › Journal article › Research › peer-review
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Isolation and characterization of novel plasmid-dependent phages infecting bacteria carrying diverse conjugative plasmids
Parra, B., Cockx, B., Lutz, V. T., Brøndsted, L., Smets, B. F. & Dechesne, A., 2024, In: Microbiology Spectrum. 12, 1, 15 p., e0253723.Research output: Contribution to journal › Journal article › Research › peer-review
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Mating Assay: Plating Below a Cell Density Threshold is Required for Unbiased Estimation of Plasmid Conjugation Frequency of RP4 Transfer Between E. coli Strains
He, Z., Smets, B. F. & Dechesne, A., 2024, In: Microbial Ecology. 87, 9 p., 109.Research output: Contribution to journal › Journal article › Research › peer-review
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Understanding Stimulation of Conjugal Gene Transfer by Nonantibiotic Compounds: How Far Are We?
He, Z., Dechesne, A., Schreiber, F., Zhu, Y.-G., Larsson, D. G. J. & Smets, B. F., 2024, In: Environmental Science and Technology. 58, 21, p. 9017-9030 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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2023
Biodegradation of chemicals tested in mixtures and individually: mixture effects on biodegradation kinetics and microbial composition
Birch, H., Dechesne, A., Knudsmark Sjøholm, K. & Mayer, P., 2023, In: Biodegradation. 34, p. 139-153 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Biofilm thickness controls the relative importance of stochastic and deterministic processes in microbial community assembly in moving bed biofilm reactors
Fowler, S. J., Torresi, E., Dechesne, A. & Smets, B. F., 2023, In: Interface Focus. 13, 2, 9 p., 20220069.Research output: Contribution to journal › Journal article › Research › peer-review
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Electrochemical disinfection may increase the spread of antibiotic resistance genes by promoting conjugal plasmid transfer
Li, H., Dechesne, A., He, Z., Jensen, M. M., Song, H. L. & Smets, B. F., 2023, In: Science of the Total Environment. 858, 8 p., 159846.Research output: Contribution to journal › Journal article › Research › peer-review
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Methanotrophic oxidation of organic micropollutants and nitrogen upcycling in a hybrid membrane biofilm reactor (hMbFR) for simultaneous O2 and CH4 supply
Mortensen, A. T., Goonesekera, E. M., Dechesne, A., Elad, T., Tang, K., Andersen, H. R., Smets, B. F. & Valverde-Pérez, B., 2023, In: Water Research. 242, 11 p., 120104.Research output: Contribution to journal › Journal article › Research › peer-review
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Narrow host range phages infect essential bacteria for water purification reactions in groundwater-fed rapid sand filters
Palomo, A., Dechesne, A., Smets, B. F. & Zheng, Y., 2023, In: Water Research. 245, 10 p., 120655.Research output: Contribution to journal › Journal article › Research › peer-review
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Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning
Moradigaravand, D., Li, L., Dechesne, A., Nesme, J., de la Cruz, R., Ahmad, H., Banzhaf, M., Sørensen, S. J., Smets, B. F. & Kreft, J.-U., 2023, In: Bioinformatics. 39, 7, 11 p., btad400.Research output: Contribution to journal › Journal article › Research › peer-review
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Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples
Yin, X., Chen, X., Jiang, X.-T., Yang, Y., Li, B., Shum, M.H.-H., Lam, T. T. Y., Leung, G. M., Rose, J., Sanchez-Cid, C., Vogel, T. M., Walsh, F., Berendonk, T. U., Midega, J., Uchea, C., Frigon, D., Wright, G. D., Bezuidenhout, C., Picão, R. C. & Ahammad, S. Z. & 26 others, , 2023, In: Environmental Science and Technology. 57, 26, p. 9713-9721 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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2022
Biodegradation Kinetics of Fragrances, Plasticizers, UV Filters, and PAHs in a Mixture─Changing Test Concentrations over 5 Orders of Magnitude
Birch, H., Sjøholm, K. K., Dechesne, A., Sparham, C., van Egmond, R. & Mayer, P., 2022, In: Environmental Science and Technology. 56, 1, p. 293–301 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle
Palomo, A., Azevedo, D., Touceda-Suárez, M., Domingo-Félez, C., Mutlu, A. G., Dechesne, A., Wang, Y., Zhang, T. & Smets, B. F., 2022, In: Environmental Microbiomes. 17, 1, 11 p., 39.Research output: Contribution to journal › Journal article › Research › peer-review
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Evolutionary Ecology of Natural Comammox Nitrospira Populations
Palomo, A., Dechesne, A., Cordero, O. X. & Smets, B. F., 2022, In: mSystems. 7, 1, 14 p., e01139-21.Research output: Contribution to journal › Journal article › Research › peer-review
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Genomic profiling of Nitrospira species reveals ecological success of comammox Nitrospira
Palomo, A., Dechesne, A., Pedersen, A. G. & Smets, B. F., 2022, In: Microbiome. 10, 1, 14 p., 204.Research output: Contribution to journal › Journal article › Research › peer-review
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IncHI1A plasmids potentially facilitate a horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage
Olesen, A. K., Pinilla-Redondo, R., Hansen, M. F., Russel, J., Dechesne, A., Smets, B. F., Madsen, J. S., Nesme, J. & Sørensen, S. J., 2022, In: Molecular Ecology. 31, 5, p. 1595-1608 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Linking biodegradation kinetics, microbial composition and test temperature - Testing 40 petroleum hydrocarbons using inocula collected in winter and summer
Sjøholm, K. K., Dechesne, A., Lyon, D., Saunders, D. M. V., Birch, H. & Mayer, P., 2022, In: Environmental Sciences: Processes and Impacts. 24, 1, p. 152-160 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages
He, Z., Parra, B., Nesme, J., Smets, B. F. & Dechesne, A., 2022, In: Water Research. 227, 8 p., 119320.Research output: Contribution to journal › Journal article › Research › peer-review
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Short sludge age denitrification as alternative process for energy and nutrient recovery
Tirkey, V., Goonesekera, E. M., Kovalovszki, A., Smets, B. F., Dechesne, A. & Valverde-Pérez, B., 2022, In: Bioresource Technology. 366, 10 p., 128184.Research output: Contribution to journal › Journal article › Research › peer-review
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2021
Conjugal transfer of catabolic plasmids by damaged bacterial cells: Rescuing genes for pesticide biodegradation
Parra, B., Tortella, G., Dechesne, A. & Martínez, M., 2021, In: International Biodeterioration and Biodegradation. 159, 7 p., 105186.Research output: Contribution to journal › Journal article › Research › peer-review
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Determining the Temperature Dependency of Biodegradation Kinetics for 34 Hydrocarbons while Avoiding Chemical and Microbial Confounding Factors
Knudsmark Sjøholm, K., Birch, H., Hammershøj, R., Saunders, D. M. V., Dechesne, A., Loibner, A. P. & Mayer, P., 2021, In: Environmental Science and Technology. 55, 16, p. 11091-11101Research output: Contribution to journal › Journal article › Research › peer-review
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EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments
Hassoun-Kheir, N., Stabholz, Y., Kreft, J.-U., de la Cruz, R., Dechesne, A., Smets, B. F., Romalde, J. L., Lema, A., Balboa, S., García-Riestra, C., Torres-Sangiao, E., Neuberger, A., Graham, D., Quintela-Baluja, M., Stekel, D. J., Graham, J., Pruden, A., Nesme, J., Sørensen, S. J. & Hough, R. & 1 others, , 2021, In: One Health. 13, 9 p., 100339.Research output: Contribution to journal › Journal article › Research › peer-review
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Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage
Li, L., Nesme, J., Quintela-Baluja, M., Balboa, S., Hashsham, S., Williams, M. R., Yu, Z., Sørensen, S. J., Graham, D. W., Romalde, J. L., Dechesne, A. & Smets, B. F., 2021, In: Environmental Science and Technology. 55, 9, p. 5939–5949Research output: Contribution to journal › Journal article › Research › peer-review
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Optimal influent N-to-P ratio for stable microalgal cultivation in water treatment and nutrient recovery
Wágner, D. S., Cazzaniga, C., Steidl, M., Dechesne, A., Valverde Pérez, B. & Plósz, B. G., 2021, In: Chemosphere. 262, 11 p., 127939.Research output: Contribution to journal › Journal article › Research › peer-review
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2020
A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination
Song, J., Klümper, U., Riber, L., Dechesne, A., Smets, B. F., Sørensen, S. J. & Brandt, K. K., 2020, In: FEMS Microbiology Ecology. 96, 11, fiaa200.Research output: Contribution to journal › Journal article › Research › peer-review
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Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes
Li, L., Dechesne, A., Madsen, J. S., Nesme, J., Sørensen, S. J. & Smets, B. F., 2020, In: ISME Journal. 14, p. 1170–1181Research output: Contribution to journal › Journal article › Research › peer-review
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2019
Bacterial dispersers along preferential flow paths of a clay till depth profile
Krüger, U. S., Dechesne, A., Bak, F., Badawi, N., Nybroe, O. & Aamand, J., 2019, In: Applied and Environmental Microbiology. 85, 6, 16 p., e02658-18.Research output: Contribution to journal › Journal article › Research › peer-review
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Copper-induced stimulation of nitrification in biological rapid sand filters for drinking water production by proliferation of Nitrosomonas spp.
Wagner, F. B., Diwan, V., Dechesne, A., Fowler, J., Smets, B. F. & Albrechtsen, H.-J., 2019, In: Environmental Science and Technology. 53, 21, p. 12433-12441Research output: Contribution to journal › Journal article › Research › peer-review
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Methanotrophic contribution to biodegradation of phenoxy acids in cultures enriched from a groundwater-fed rapid sand filter
Papadopoulou, A., Hedegaard, M. J., Dechesne, A., Albrechtsen, H.-J., Musovic, S. & Smets, B. F., 2019, In: Applied Microbiology and Biotechnology. 103, 2, p. 1007-1019Research output: Contribution to journal › Journal article › Research › peer-review
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2018
Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater‐fed rapid sand filter communities
Fowler, S. J., Palomo, A., Dechesne, A., Mines, P. D. & Smets, B. F., 2018, In: Environmental Microbiology. 20, 3, p. 1002-1015Research output: Contribution to journal › Journal article › Research › peer-review
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Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira
Palomo, A., Pedersen, A. G., Fowler, J., Dechesne, A., Sicheritz-Pontén, T. & Smets, B. F., 2018, In: I S M E Journal. 12, 7, p. 1779-1793Research output: Contribution to journal › Journal article › Research › peer-review
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Does universal 16S rRNA gene amplicon sequencing of environmental communities provide an accurate description of nitrifying guilds?
Diwan, V., Albrechtsen, H.-J., Smets, B. F. & Dechesne, A., 2018, In: Journal of Microbiological Methods. 151, p. 28-34Research output: Contribution to journal › Journal article › Research › peer-review
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Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community
Li, L., Dechesne, A., He, Z., Madsen, J. S., Nesme, J., Sørensen, S. J. & Smets, B. F., 2018, In: Environmental Science & Technology Letters. 5, 5, p. 260-265Research output: Contribution to journal › Journal article › Research › peer-review
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Evidence of co-metabolic bentazone transformation by methanotrophic enrichment from a groundwater-fed rapid sand filter
Hedegaard, M. J., Deliniere, H., Prasse, C., Dechesne, A., Smets, B. F. & Albrechtsen, H.-J., 2018, In: Water Research. 129, p. 105-114 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Novel method reveals a narrow phylogenetic distribution of bacterial dispersers in environmental communities exposed to low hydration conditions
Krüger, U. S., Bak, F., Aamand, J., Nybroe, O., Badawi, N., Smets, B. F. & Dechesne, A., 2018, In: Applied and Environmental Microbiology. 84, 7, 16 p., e02857-17.Research output: Contribution to journal › Journal article › Research › peer-review
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Stochastic processes govern invasion success in microbial communities when the invader is phylogenetically close to resident bacteria
Kinnunen, M., Dechesne, A., Albrechtsen, H.-J. & Smets, B. F., 2018, In: I S M E Journal. 12, p. 2748–2756Research output: Contribution to journal › Journal article › Research › peer-review
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2017
Density and distribution of nitrifying guilds in rapid sand filters for drinking water production: Dominance of Nitrospira spp.
Tatari, K., Musovic, S., Gülay, A., Dechesne, A., Albrechtsen, H.-J. & Smets, B. F., 2017, In: Water Research. 127, p. 239-248Research output: Contribution to journal › Journal article › Research › peer-review
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Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Klümper, U., Dechesne, A., Riber, L., Brandt, K. K., Gülay, A., Sørensen, S. J. & Smets, B. F., 2017, In: I S M E Journal. 11, p. 152-165 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Nitrotoga is selected over Nitrospira in newly assembled biofilm communities from a tap water source community at increased nitrite loading
Kinnunen, M., Gülay, A., Albrechtsen, H.-J., Dechesne, A. & Smets, B. F., 2017, In: Environmental Microbiology. 19, 7, p. 2785–2793Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile494 Downloads (Pure) -
2016
A conceptual framework for invasion in microbial communities
Kinnunen, M., Dechesne, A., Proctor, C., Hammes, F., Johnson, D., Quintela-Baluja, M., Graham, D., Daffonchio, D., Fodelianakis, S., Hahn, N., Boon, N. & Smets, B. F., 2016, In: The I S M E Journal. 10, p. 2773–2779 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile1022 Downloads (Pure) -
Underestimation of ammonia-oxidizing bacteria abundance by amplification bias in amoA-targeted qPCR
Dechesne, A., Musovic, S., Palomo, A., Diwan, V. & Smets, B. F., 2016, In: Microbial Biotechnology. 9, 4, p. 519-524 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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2015
A nitrate sensitive planar optode; performance and interferences
Pedersen, L., Dechesne, A. & Smets, B. F., 2015, In: Talanta. 144, p. 933-937 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Measuring biogeochemical heterogeneity at the micro scale in soils and sediments
Pedersen, L. L., Smets, B. F. & Dechesne, A., 2015, In: Soil Biology & Biochemistry. 90, p. 122-138 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Microthrix parvicella abundance associates with activated sludge settling velocity and rheology - Quantifying and modelling filamentous bulking
Wágner, D. S., Ramin, E., Szabo, P., Dechesne, A. & Plósz, B. G., 2015, In: Water Research. 78, p. 121-132 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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The spatial distribution of exoenzyme activities across the soil micro-landscape, as measured in micro- and macro-aggregates, and ecosystem processes
Kim, H., Nunan, N., Dechesne, A., Juarez, S. & Grundmann, G., 2015, In: Soil Biology & Biochemistry. 91, p. 258-267 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
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2014
Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
Klümper, U., Riber, L., Dechesne, A., Sannazzaro, A., Hansen, L. H., Sørensen, S. J. & Smets, B. F., 2014, In: I S M E Journal. p. 1-12 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials
Gülez, G., Altintas, A., Fazli, M., Dechesne, A., Workman, C., Tolker-Nielsen, T. & Smets, B. F., 2014, In: MicrobiologyOpen. 3, 4, p. 457-469Research output: Contribution to journal › Journal article › Research › peer-review
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