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  • Kemitorvet, 201, 137

    2800 Kgs. Lyngby

    Denmark

20022022
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Research Output 2002 2019

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Journal article
2018
42 Downloads (Pure)
Open Access
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Growth and food consumption of whiting Merlangius merlangus

Ross, S. D., Nielsen, J. R., Gislason, H., Nielsen, A. & Andersen, N. G., 2018, In : Journal of Fish Biology. 93, 2, p. 334-343 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Review of State-Space Models for Fisheries Science

Aeberhard, W. H., Flemming, J. M. & Nielsen, A., 2018, In : Annual Review of Statistics and Its Application. 5, 1, p. 215-235

Research output: Contribution to journalJournal articleResearchpeer-review

2017
172 Downloads (Pure)

A spatiotemporal model for snow crab (Chionoecetes opilio) stock size in the southern Gulf of St. Lawrence

Cadigan, N. G., Wade, E. & Nielsen, A., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 11, p. 1808-1820

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
10 Downloads (Pure)

Choosing the observational likelihood in state-space stock assessment models

Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 5, p. 779-789

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
2 Downloads (Pure)

Connecting single-stock assessment models through correlated survival

Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2017, In : ICES Journal of Marine Science. 75, 1, p. 235-244

Research output: Contribution to journalJournal articleResearchpeer-review

775 Downloads (Pure)

glmmTMB balances speed and flexibility among packages for Zero-inflated Generalized Linear Mixed Modeling

Brooks, M. E., Kristensen, K., van Benthem, K. J., Magnusson, A., Berg, C. W., Nielsen, A., Skaug, H. J., Machler, M. & Bolker, B. M., 2017, In : The R Journal. 9, 2, p. 378-400

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
203 Downloads (Pure)

Validation of ecological state space models using the Laplace approximation

Thygesen, U. H., Albertsen, C. M., Berg, C. W., Kristensen, K. & Nielsen, A., 2017, In : Environmental and Ecological Statistics. 24, 2, p. 317-339

Research output: Contribution to journalJournal articleResearchpeer-review

File
2016
367 Downloads (Pure)

Accounting for correlated observations in an age-based state-space stock assessment model

Berg, C. W. & Nielsen, A., 2016, In : ICES Journal of Marine Science. 73, 7, p. 1788-1797

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Ontogeny and growth of early life stages of captive-bred European eel

Sørensen, S. R., Tomkiewicz, J., Munk, P., Butts, I. A. E., Nielsen, A., Lauesen, P. & Graver, C., 2016, In : Aquaculture. 456, p. 50-61

Research output: Contribution to journalJournal articleResearchpeer-review

371 Downloads (Pure)

TMB: Automatic differentiation and laplace approximation

Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H. J. & Bell, B., 2016, In : Journal of Statistical Software. 70, 5, p. 1-21

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2015
255 Downloads (Pure)

Archived DNA reveals fisheries and climate induced collapse of a major fishery

Bonanomi, S., Pellissier, L., Therkildsen, N. O., Hedeholm, R. B., Retzel, A., Meldrup, D., Olsen, S. M., Nielsen, A., Pampoulie, C., Hansen, J. H., Wisz, M., Grønkjær, P. & Eg Nielsen, E., 2015, In : Scientific Reports. 5, 15395.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Fast fitting of non-Gaussian state-space models to animal movement data via Template Model Builder

Albertsen, C. M., Whoriskey, K., Yurkowski, D., Nielsen, A. & Flemming, J. M., 2015, In : Ecology. 96, 10, p. 2598-2604

Research output: Contribution to journalJournal articleResearchpeer-review

Limits to the reliability of size-based fishing status estimation for data-poor stocks

Kokkalis, A., Thygesen, U. H., Nielsen, A. & Andersen, K. H., 2015, In : Fisheries Research. 171, p. 4-11

Research output: Contribution to journalJournal articleResearchpeer-review

Simulation testing the robustness of stock assessment models to error: some results from the ICES strategic initiative on stock assessment methods

Deroba, J. J., Butterworth, D. S., Methot, R. D., De Oliveira, J. A. A., Fernandez, C., Nielsen, A., Cadrin, S. X., Dickey-Collas, M., Legault, C. M., Ianelli, J., Valero, J. L., Needle, C. L., O'Malley, J. M., Chang, Y-J., Thompson, G. G., Canales, C., Swain, D. P., Miller, D. C. M., Hintzen, N. T., Bertignac, M. & 15 others, Ibaibarriaga, L., Silva, A., Murta, A., Kell, L. T., de Moor, C. L., Parma, A. M., Dichmont, C. M., Restrepo, V. R., Ye, Y., Jardim, E., Spencer, P. D., Hanselman, D. H., Blaylock, J., Mood, M. & Hulson, P. . J. F., 2015, In : ICES Journal of Marine Science. 72, 1, p. 19-30

Research output: Contribution to journalJournal articleResearchpeer-review

2014

Depth preference in released juvenile turbot Psetta maxima

Albertsen, C. M., Støttrup, J., Nielsen, A. & Christoffersen, M., 2014, In : Journal of Experimental Marine Biology and Ecology. 461, p. 179-184

Research output: Contribution to journalJournal articleResearchpeer-review

Effects of dietary fatty acids on the production and quality of eggs and larvae of Atlantic cod (Gadus morhua L.)

Røjbek, M., Støttrup, J., Jacobsen, C., Tomkiewicz, J., Nielsen, A. & Trippel, E. A., 2014, In : Aquaculture Nutrition. 20, 6, p. 654-666

Research output: Contribution to journalJournal articleResearchpeer-review

Estimation of time-varying selectivity in stock assessments using state-space models

Nielsen, A. & Berg, C. W., 2014, In : Fisheries Research. 158, p. 96-101

Research output: Contribution to journalJournal articleResearchpeer-review

2013
1606 Downloads (Pure)

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

Bolker, B. M., Gardner, B., Maunder, M., Berg, C. W., Brooks, M., Comita, L., Crone, E., Cubaynes, S., Davies, T., Valpine, P. D., Ford, J., Gimenez, O., Kéry, M., Kim, E. J., Lennert-Cody, C., Magnusson, A., Martell, S., Nash, J., Nielsen, A., Regetz, J. & 2 others, Skaug, H. & Zipkin, E., 2013, In : Methods in Ecology and Evolution. 4, 6, p. 501-512

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2012

Does predation by grey seals (Halichoerus grypus) affect Bothnian Sea herring stock estimates?

Gårdmark, A., Östman, Ö., Nielsen, A., Lundström, K., Karlsson, O., Pönni, J. & Aho, T., 2012, In : ICES Journal of Marine Science. 69, 8, p. 1448-1456

Research output: Contribution to journalJournal articleResearchpeer-review

2011
526 Downloads (Pure)

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

Fournier, D. A., Skaug, H. J., Ancheta, J., Ianelli, J., Magnusson, A., Maunder, M., Nielsen, A. & Sibert, J., 2011, In : Optimization Methods and Software. 27, 2, p. 233-249

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Depleted marine fish stocks and ecosystem-based management: on the road to recovery we need to be precautionary

Gårdmark, A., Nielsen, A., Floeter, J. & Möllmann, C., 2011, In : ICES Journal of Marine Science. 68, 1, p. 212-220

Research output: Contribution to journalJournal articleResearchpeer-review

Estimation methods for nonlinear state-space models in ecology

Pedersen, M. W., Berg, C. W., Thygesen, U. H., Nielsen, A. & Madsen, H., 2011, In : Ecological Modelling. 222, 8, p. 1394-1400

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)

Fishing power increases from technological development in the Faroe Islands longline fishery

Eigaard, O. R., Thomsen, B., Hovgard, H., Nielsen, A. & Rijnsdorp, A. D., 2011, In : Canadian Journal of Fisheries and Aquatic Sciences. 68, 11, p. 1970-1982

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)

Postrelease survival, vertical and horizontal movements, and thermal habitats of five species of pelagic sharks in the central Pacific Ocean

Musyl, M. K., Brill, R. W., Curran, D. S., Fragoso, N. M., McNaughton, L. M., Nielsen, A., Kikkawa, B. S. & Moyes, C. D., 2011, In : Fishery Bulletin. 109, 4, p. 341-368

Research output: Contribution to journalJournal articleResearchpeer-review

2010

Ecological forecasting under climate change: the case of Baltic cod

Lindegren, M., Möllmann, C., Nielsen, A., Brander, K., MacKenzie, B. & Stenseth, N. C., 2010, In : Royal Society of London. Proceedings. Biological Sciences. 277, 1691, p. 2121-2130

Research output: Contribution to journalJournal articleResearchpeer-review

Incorporating sea-surface temperature to the light-based geolocation model TrackIt

Lam, C. H., Nielsen, A. & Sibert, J. R., 2010, In : Marine Ecology - Progress Series. 419, p. 71-84

Research output: Contribution to journalJournal articleResearchpeer-review

Movements of olive ridley sea turtles Lepidochelys olivacea and associated oceanographic features as determined by improved light-based geolocation

Swimmer, Y., McNaughton, L., Foley, D., Moxey, L. & Nielsen, A., 2010, In : Endangered Species Research. 10, 1-3, p. 245-254

Research output: Contribution to journalJournal articleResearchpeer-review

2009

Preventing the collapse of the Baltic cod stock through an ecosystem-based management approach

Lindegren, M., Möllmann, C., Nielsen, A. & Stenseth, N. C., 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 34, p. 14722-14727

Research output: Contribution to journalJournal articleResearchpeer-review

2008

Improving light and temperature based geolocation by unscented Kalman filtering

Lam, C. H., Nielsen, A. & Sibert, J. R., 2008, In : Fisheries Research. 91, 1, p. 15-25

Research output: Contribution to journalJournal articleResearchpeer-review

Optimizing smoothed sea surface temperature for improving archival tag geolocation

Galuardi, B., Nielsen, A. & Lutcavage, M., 2008, In : Marine Ecology - Progress Series. 365, p. 35-44

Research output: Contribution to journalJournal articleResearchpeer-review

2007

Reconstructing migrations of individual cod ( Gadus morhua L.) in the Baltic Sea by using electronic data storage tags

Neuenfeldt, S., Hinrichsen, H. H., Nielsen, A. & Andersen, K. H., 2007, In : Fisheries Oceanography. 16, 6, p. 526-535

Research output: Contribution to journalJournal articleResearchpeer-review

State-space model for light-based tracking of marine animals

Nielsen, A. & Sibert, J. R., 2007, In : Canadian Journal of Fisheries and Aquatic Sciences. 64, 8, p. 1055-1068

Research output: Contribution to journalJournal articleResearchpeer-review

2006

Improving light-based geolocation by including sea surface temperature

Nielsen, A., Bigelow, K. A., Musyl, M. K. & Sibert, J. R., 2006, In : Fisheries Oceanography. 15, 4, p. 314-325

Research output: Contribution to journalJournal articleResearchpeer-review

Interannual variation in large-scale movement of Atlantic bluefin tuna (Thunnus thynnus) determined from pop-up satellite archival tags

Sibert, J. R., Lutcavage, M. E., Nielsen, A., Brill, R. W. & Wilson, S. G., 2006, In : Canadian Journal of Fisheries and Aquatic Sciences. 63, 10, p. 2154-2166

Research output: Contribution to journalJournal articleResearchpeer-review

2005

Hvor har fisken været før den blev fanget?

Nielsen, A., 2005, In : Fisk og hav. 59, p. 54-59

Research output: Contribution to journalJournal articleResearch

2004

Stock dynamics of sandeel in the North Sea and sub-regions including uncertainties

Lewy, P., Nielsen, A. & Gislason, H., 2004, In : Fisheries Research. 68, 1/3, p. 237-248

Research output: Contribution to journalJournal articleResearchpeer-review

2003

Modelling stochastic fish stock dynamics using Markov Chain Monte Carlo

Lewy, P. & Nielsen, A., 2003, In : ICES Journal of Marine Science. 60, 4, p. 743-752

Research output: Contribution to journalJournal articleResearchpeer-review

Diffusion of fish from a single release point

Sparrevohn, C. R., Nielsen, A. & Støttrup, J., 2002, In : Canadian Journal of Fisheries and Aquatic Sciences. 59, 5, p. 844-853

Research output: Contribution to journalJournal articleResearchpeer-review