Research Output per year
Research Output 2002 2018
- 1 - 50 out of 66 results
- Publication Year, Title (descending)
2018
Åleyngel foretrækker stenede bundtyper
Christoffersen, M., Svendsen, J. C., Kuhn, J., Nielsen, A. & Støttrup, J. G., 2018Research output: Other contribution › Net publication - Internet publication › Communication
Open Access
Benthic habitat selection in juvenile European eel Anguilla anguilla : implications for coastal habitat management and restoration
Christoffersen, M., Svendsen, J. C., Kuhn, J. A., Nielsen, A., Martjanova, A. & Støttrup, J. G., 2018, In : Journal of Fish Biology. 93, 5, p. 996-999Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Growth and food consumption of whiting Merlangius merlangus
Ross, S. D., Nielsen, J. R., Gislason, H., Nielsen, A. & Andersen, N. G., 2018, In : Journal of Fish Biology. 93, 2, p. 334-343 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Response to: Comments on incongruous formulations in the SAM (state-space assessment model) model and consequences for fish stock assessment
Nielsen, A. & Berg, C. W., 2018, In : Fisheries Research. 210, p. 228-229Research output: Contribution to journal › Comment/debate › Research › peer-review
Review of State-Space Models for Fisheries Science
Aeberhard, W. H., Flemming, J. M. & Nielsen, A., 2018, In : Annual Review of Statistics and Its Application. 5, 1, p. 215-235Research output: Contribution to journal › Journal article › Research › peer-review
2017
A spatiotemporal model for snow crab (Chionoecetes opilio) stock size in the southern Gulf of St. Lawrence
Cadigan, N. G., Wade, E. & Nielsen, A., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 11, p. 1808-1820Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Choosing the observational likelihood in state-space stock assessment models
Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 5, p. 779-789Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
Connecting single-stock assessment models through correlated survival
Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2017, In : ICES Journal of Marine Science. 75, 1, p. 235-244Research output: Contribution to journal › Journal article › Research › peer-review
glmmTMB balances speed and flexibility among packages for Zero-inflated Generalized Linear Mixed Modeling
Brooks, M. E., Kristensen, K., van Benthem, K. J., Magnusson, A., Berg, C. W., Nielsen, A., Skaug, H. J., Machler, M. & Bolker, B. M., 2017, In : The R Journal. 9, 2, p. 378-400Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Validation of ecological state space models using the Laplace approximation
Thygesen, U. H., Albertsen, C. M., Berg, C. W., Kristensen, K. & Nielsen, A., 2017, In : Environmental and Ecological Statistics. 24, 2, p. 317-339Research output: Contribution to journal › Journal article › Research › peer-review
File
2016
Accounting for correlated observations in an age-based state-space stock assessment model
Berg, C. W. & Nielsen, A., 2016, In : ICES Journal of Marine Science. 73, 7, p. 1788-1797Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Ontogeny and growth of early life stages of captive-bred European eel
Sørensen, S. R., Tomkiewicz, J., Munk, P., Butts, I. A. E., Nielsen, A., Lauesen, P. & Graver, C., 2016, In : Aquaculture. 456, p. 50-61Research output: Contribution to journal › Journal article › Research › peer-review
352
Downloads
(Pure)
TMB: Automatic differentiation and laplace approximation
Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H. J. & Bell, B., 2016, In : Journal of Statistical Software. 70, 5, p. 1-21Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Validation of state-space models using Template Model Builder
Thygesen, U. H., Albertsen, C. M., Berg, C. W., Kristensen, K., Nielsen, A. & Pedersen, M. W., 2016.Research output: Contribution to conference › Conference abstract for conference › Research
2015
125
Downloads
(Pure)
Accounting for correlated observations in an age-based state-space stock assessment model
Berg, C. W. & Nielsen, A., 2015. 2 p.Research output: Contribution to conference › Conference abstract for conference › Research
Open Access
File
Archived DNA reveals fisheries and climate induced collapse of a major fishery
Bonanomi, S., Pellissier, L., Therkildsen, N. O., Hedeholm, R. B., Retzel, A., Meldrup, D., Olsen, S. M., Nielsen, A., Pampoulie, C., Hansen, J. H., Wisz, M., Grønkjær, P. & Eg Nielsen, E., 2015, In : Scientific Reports. 5, 15395.Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
200
Downloads
(Pure)
Choosing the observational likelihood in state-space stock assessment models
Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2015.Research output: Contribution to conference › Conference abstract for conference › Research
Open Access
File
Fast fitting of non-Gaussian state-space models to animal movement data via Template Model Builder
Albertsen, C. M., Whoriskey, K., Yurkowski, D., Nielsen, A. & Flemming, J. M., 2015, In : Ecology. 96, 10, p. 2598-2604Research output: Contribution to journal › Journal article › Research › peer-review
Limits to the reliability of size-based fishing status estimation for data-poor stocks
Kokkalis, A., Thygesen, U. H., Nielsen, A. & Andersen, K. H., 2015, In : Fisheries Research. 171, p. 4-11Research output: Contribution to journal › Journal article › Research › peer-review
Optimal bæredygtig udnyttelse af tilgængelige torskebestande for dansk fiskeri
Eero, M., Hansen, J. H., Hüssy, K., Huwer, B., Berg, C. W., Mariani, P., Mosegaard, H., Nielsen, A., Eg Nielsen, E., Rindorf, A., Ulrich, C., Vinther, M. & Worsøe Clausen, L., 2015, Charlottenlund: DTU Aqua. 52 p.Research output: Book/Report › Report › Research
RevFisk – et projekt som kvantificerer stenrevs (et lavtliggende stenrev i den fotiske zone og et dybere liggende stenrev i den afotiske zone) betydning for fisk
Stenberg, C., Christoffersen, M., Aarestrup, K., Deurs, M. V., Støttrup, J., Nielsen, A., Andersen, N. G., Mariani, P., Baktoft, H., Pedersen, M. W., Dahl, K., Lundsteen, S., Stæhr, P., Rasmussen, M. B., Mohn, C., Møhlenberg, F., Hansen, F. T., Uhrenholt, T., Middelboe, A. L. & Mandviwalla, X. R., 2015.Research output: Contribution to conference › Conference abstract for conference › Research
288
Downloads
(Pure)
RevFisk – et projekt som kvantificerer stenrevs betydning for fisk
Stenberg, C., Christoffersen, M., Aarestrup, K., Deurs, M. V., Støttrup, J., Nielsen, A., Andersen, N. G., Mariani, P., Baktoft, H., Pedersen, M. W., Dahl, K., Lundsteen, S., Stæhr, P., Rasmussen, M. B., Mohn, C., Møhlenberg, F., Hansen, F. T., Uhrenholt, T., Middelboe, A. L. & Mandviwalla, X. R., 2015.Research output: Contribution to conference › Poster › Research
Open Access
File
57
Downloads
(Pure)
Robust statistical method in a single species age-structured state-space assessment model
Nielsen, A. & Berg, C. W., 2015. 2 p.Research output: Contribution to conference › Conference abstract for conference › Research
Open Access
File
Simulation testing the robustness of stock assessment models to error: some results from the ICES strategic initiative on stock assessment methods
Deroba, J. J., Butterworth, D. S., Methot, R. D., De Oliveira, J. A. A., Fernandez, C., Nielsen, A., Cadrin, S. X., Dickey-Collas, M., Legault, C. M., Ianelli, J., Valero, J. L., Needle, C. L., O'Malley, J. M., Chang, Y-J., Thompson, G. G., Canales, C., Swain, D. P., Miller, D. C. M., Hintzen, N. T., Bertignac, M. & 15 others, , 2015, In : ICES Journal of Marine Science. 72, 1, p. 19-30Research output: Contribution to journal › Journal article › Research › peer-review
331
Downloads
(Pure)
Sustainable development of the Nephrops fishery in the Kattegat-Skagerrak region
Frandsen, R., Eliasen, S. Q., Lövgren, J., Søvik, G., Feekings, J. P., Ulmestrand, M., Lund, H., Andersen, B. S., Axelsen, B. E., Bastardie, F., Berg, C. W., Bichel, N., Furevik, D., Jacobsen, J. B., Johansen, T., Jonasdottir, S., Jonsson, P., Jørgensen, T., Karlsen, J. D., Kleiven, A. R. & 8 others, , 2015, Charlottenlund: National Institute of Aquatic Resources, Technical University of Denmark. 23 p. (DTU Aqua Report; No. 298-2015).Research output: Book/Report › Report › Research
Open Access
File
142
Downloads
(Pure)
The history of cod in Greenland: A major fishery collapse explained by archived DNA
Eg Nielsen, E., Bonanomi, S., Pellissier, L., Therkildsen, N. O., Hedeholm, R., Retzel, A., Olsen, S. M., Nielsen, A., Pampoulie, C., Hansen, J. H., Wisz, M. & Grønkjaer, P., 2015. 1 p.Research output: Contribution to conference › Conference abstract for conference › Research
Open Access
File
2014
Depth preference in released juvenile turbot Psetta maxima
Albertsen, C. M., Støttrup, J., Nielsen, A. & Christoffersen, M., 2014, In : Journal of Experimental Marine Biology and Ecology. 461, p. 179-184Research output: Contribution to journal › Journal article › Research › peer-review
Effects of dietary fatty acids on the production and quality of eggs and larvae of Atlantic cod (Gadus morhua L.)
Røjbek, M., Støttrup, J., Jacobsen, C., Tomkiewicz, J., Nielsen, A. & Trippel, E. A., 2014, In : Aquaculture Nutrition. 20, 6, p. 654-666Research output: Contribution to journal › Journal article › Research › peer-review
Estimation of time-varying selectivity in stock assessments using state-space models
Nielsen, A. & Berg, C. W., 2014, In : Fisheries Research. 158, p. 96-101Research output: Contribution to journal › Journal article › Research › peer-review
Evaluation of alternative age-based methods for estimating relative abundance from survey data in relation to assessment models
Berg, C. W., Nielsen, A. & Kristensen, K., 2014, In : Fisheries Research. 151, p. 91-99Research output: Contribution to journal › Journal article › Research › peer-review
155
Downloads
(Pure)
Introducing time-varying natural mortality in the length-based assessment model for the Pandalus Borealis stock in ICES Div. IIIa and IVa east
Jørgensen, M., Munch-Petersen, S., Nielsen, A., Søvik, G., Ulmestrand, M., Devine, J. & Eigaard, O. R., 2014.Research output: Contribution to conference › Paper › Research
Open Access
File
2013
Addressing challenges in single species assessments via a simple state-space assessment model.
Nielsen, A., 2013.Research output: Contribution to conference › Conference abstract for conference › Research
A stochastic length-based assessment model for the Pandalus stock in Skagerrak and the Norwegian Deep
Nielsen, A., Munch-Petersen, S., Eigaard, O. R., Søvik, G. & Ulmestrand, M., 2013, In : Scientific Council Research Documents NAFO. 13/074, 12 p.Research output: Contribution to journal › Conference article › Research
Size-based estimation of the status of fish stocks: simulation analysis and comparison with age-based estimations
Kokkalis, A., Thygesen, U. H., Nielsen, A. & Andersen, K. H., 2013.Research output: Contribution to conference › Conference abstract for conference › Research
Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS
Bolker, B. M., Gardner, B., Maunder, M., Berg, C. W., Brooks, M., Comita, L., Crone, E., Cubaynes, S., Davies, T., Valpine, P. D., Ford, J., Gimenez, O., Kéry, M., Kim, E. J., Lennert-Cody, C., Magnusson, A., Martell, S., Nash, J., Nielsen, A., Regetz, J. & 2 others, , 2013, In : Methods in Ecology and Evolution. 4, 6, p. 501-512Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
2012
Does predation by grey seals (Halichoerus grypus) affect Bothnian Sea herring stock estimates?
Gårdmark, A., Östman, Ö., Nielsen, A., Lundström, K., Karlsson, O., Pönni, J. & Aho, T., 2012, In : ICES Journal of Marine Science. 69, 8, p. 1448-1456Research output: Contribution to journal › Journal article › Research › peer-review
2011
AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models
Fournier, D. A., Skaug, H. J., Ancheta, J., Ianelli, J., Magnusson, A., Maunder, M., Nielsen, A. & Sibert, J., 2011, In : Optimization Methods and Software. 27, 2, p. 233-249Research output: Contribution to journal › Journal article › Research › peer-review
Open Access
File
Depleted marine fish stocks and ecosystem-based management: on the road to recovery we need to be precautionary
Gårdmark, A., Nielsen, A., Floeter, J. & Möllmann, C., 2011, In : ICES Journal of Marine Science. 68, 1, p. 212-220Research output: Contribution to journal › Journal article › Research › peer-review
Effects of mammal predation on small pelagic fish
Gårdmark, A., Östman, Ö., Lundström, K., Karlsson, O., Pönni, J., Lindegren, M., Nielsen, A., Kaljuste, O. & Aho, T., 2011.Research output: Contribution to conference › Conference abstract for conference › Research
Estimation methods for nonlinear state-space models in ecology
Pedersen, M. W., Berg, C. W., Thygesen, U. H., Nielsen, A. & Madsen, H., 2011, In : Ecological Modelling. 222, 8, p. 1394-1400Research output: Contribution to journal › Journal article › Research › peer-review
Fishing power increases from technological development in the Faroe Islands longline fishery
Eigaard, O. R., Thomsen, B., Hovgard, H., Nielsen, A. & Rijnsdorp, A. D., 2011, In : Canadian Journal of Fisheries and Aquatic Sciences. 68, 11, p. 1970-1982Research output: Contribution to journal › Journal article › Research › peer-review
1
Downloads
(Pure)
Postrelease survival, vertical and horizontal movements, and thermal habitats of five species of pelagic sharks in the central Pacific Ocean
Musyl, M. K., Brill, R. W., Curran, D. S., Fragoso, N. M., McNaughton, L. M., Nielsen, A., Kikkawa, B. S. & Moyes, C. D., 2011, In : Fishery Bulletin. 109, 4, p. 341-368Research output: Contribution to journal › Journal article › Research › peer-review
2010
Ecological forecasting under climate change: the case of Baltic cod
Lindegren, M., Möllmann, C., Nielsen, A., Brander, K., MacKenzie, B. & Stenseth, N. C., 2010, In : Royal Society of London. Proceedings. Biological Sciences. 277, 1691, p. 2121-2130Research output: Contribution to journal › Journal article › Research › peer-review
Ecological forecasting under climate change - the case of Baltic cod
Lindegren, M., Möllmann, C., Nielsen, A., Brander, K. & MacKenzie, B., 2010.Research output: Contribution to conference › Conference abstract for conference › Research
Incorporating sea-surface temperature to the light-based geolocation model TrackIt
Lam, C. H., Nielsen, A. & Sibert, J. R., 2010, In : Marine Ecology - Progress Series. 419, p. 71-84Research output: Contribution to journal › Journal article › Research › peer-review
Movements of olive ridley sea turtles Lepidochelys olivacea and associated oceanographic features as determined by improved light-based geolocation
Swimmer, Y., McNaughton, L., Foley, D., Moxey, L. & Nielsen, A., 2010, In : Endangered Species Research. 10, 1-3, p. 245-254Research output: Contribution to journal › Journal article › Research › peer-review
2009
Lessons from a prototype geolocation problem
Thygesen, U. H. & Nielsen, A., 2009, Tagging and Tracking of Marine Animals with Electronic Devices. Springer, Vol. Part 2: Geolocation Methods. p. 257-276 452 p. (Reviews: Methods and Technologies in Fish Biology and Fisheries, Vol. 9).Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
Preventing the collapse of the Baltic cod stock through an ecosystem-based management approach
Lindegren, M., Möllmann, C., Nielsen, A. & Stenseth, N. C., 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 34, p. 14722-14727Research output: Contribution to journal › Journal article › Research › peer-review
Removing bias in latitude estimated from solar irradiance time series
Sibert, J. R., Nielsen, A., Musyl, M., Leroy, B. & Evans, K., 2009, Tagging and Tracking of Marine Animals with Electronic Devices: Geolocation Methods. Springer, Vol. 2. p. 311-322Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review
State space model for light based tracking of marine animals: validation on swimming and diving creatures
Nielsen, A., Sibert, J., Kohin, S. & Musyl, M., 2009, Tagging and Tracking of Marine Animals with Electronic Devices: Geolocation Methods. Springer, Vol. 2. p. 295-309Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Research › peer-review