No photo of Anders Nielsen
  • Kemitorvet, 201, 137

    2800 Kgs. Lyngby

    Denmark

20022022
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Research Output 2002 2018

2018

Åleyngel foretrækker stenede bundtyper

Christoffersen, M., Svendsen, J. C., Kuhn, J., Nielsen, A. & Støttrup, J. G., 2018

Research output: Other contributionNet publication - Internet publicationCommunication

Open Access
19 Downloads (Pure)
Open Access
File

Growth and food consumption of whiting Merlangius merlangus

Ross, S. D., Nielsen, J. R., Gislason, H., Nielsen, A. & Andersen, N. G., 2018, In : Journal of Fish Biology. 93, 2, p. 334-343 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Review of State-Space Models for Fisheries Science

Aeberhard, W. H., Flemming, J. M. & Nielsen, A., 2018, In : Annual Review of Statistics and Its Application. 5, 1, p. 215-235

Research output: Contribution to journalJournal articleResearchpeer-review

2017
140 Downloads (Pure)

A spatiotemporal model for snow crab (Chionoecetes opilio) stock size in the southern Gulf of St. Lawrence

Cadigan, N. G., Wade, E. & Nielsen, A., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 11, p. 1808-1820

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
10 Downloads (Pure)

Choosing the observational likelihood in state-space stock assessment models

Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2017, In : Canadian Journal of Fisheries and Aquatic Sciences. 74, 5, p. 779-789

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
2 Downloads (Pure)

Connecting single-stock assessment models through correlated survival

Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2017, In : ICES Journal of Marine Science. 75, 1, p. 235-244

Research output: Contribution to journalJournal articleResearchpeer-review

657 Downloads (Pure)

glmmTMB balances speed and flexibility among packages for Zero-inflated Generalized Linear Mixed Modeling

Brooks, M. E., Kristensen, K., van Benthem, K. J., Magnusson, A., Berg, C. W., Nielsen, A., Skaug, H. J., Machler, M. & Bolker, B. M., 2017, In : The R Journal. 9, 2, p. 378-400

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
165 Downloads (Pure)

Validation of ecological state space models using the Laplace approximation

Thygesen, U. H., Albertsen, C. M., Berg, C. W., Kristensen, K. & Nielsen, A., 2017, In : Environmental and Ecological Statistics. 24, 2, p. 317-339

Research output: Contribution to journalJournal articleResearchpeer-review

File
2016
336 Downloads (Pure)

Accounting for correlated observations in an age-based state-space stock assessment model

Berg, C. W. & Nielsen, A., 2016, In : ICES Journal of Marine Science. 73, 7, p. 1788-1797

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Ontogeny and growth of early life stages of captive-bred European eel

Sørensen, S. R., Tomkiewicz, J., Munk, P., Butts, I. A. E., Nielsen, A., Lauesen, P. & Graver, C., 2016, In : Aquaculture. 456, p. 50-61

Research output: Contribution to journalJournal articleResearchpeer-review

351 Downloads (Pure)

TMB: Automatic differentiation and laplace approximation

Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H. J. & Bell, B., 2016, In : Journal of Statistical Software. 70, 5, p. 1-21

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Validation of state-space models using Template Model Builder

Thygesen, U. H., Albertsen, C. M., Berg, C. W., Kristensen, K., Nielsen, A. & Pedersen, M. W., 2016.

Research output: Contribution to conferenceConference abstract for conferenceResearch

2015
124 Downloads (Pure)

Accounting for correlated observations in an age-based state-space stock assessment model

Berg, C. W. & Nielsen, A., 2015. 2 p.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Open Access
File
239 Downloads (Pure)

Archived DNA reveals fisheries and climate induced collapse of a major fishery

Bonanomi, S., Pellissier, L., Therkildsen, N. O., Hedeholm, R. B., Retzel, A., Meldrup, D., Olsen, S. M., Nielsen, A., Pampoulie, C., Hansen, J. H., Wisz, M., Grønkjær, P. & Eg Nielsen, E., 2015, In : Scientific Reports. 5, 15395.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
199 Downloads (Pure)

Choosing the observational likelihood in state-space stock assessment models

Albertsen, C. M., Nielsen, A. & Thygesen, U. H., 2015.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Open Access
File

Fast fitting of non-Gaussian state-space models to animal movement data via Template Model Builder

Albertsen, C. M., Whoriskey, K., Yurkowski, D., Nielsen, A. & Flemming, J. M., 2015, In : Ecology. 96, 10, p. 2598-2604

Research output: Contribution to journalJournal articleResearchpeer-review

Limits to the reliability of size-based fishing status estimation for data-poor stocks

Kokkalis, A., Thygesen, U. H., Nielsen, A. & Andersen, K. H., 2015, In : Fisheries Research. 171, p. 4-11

Research output: Contribution to journalJournal articleResearchpeer-review

RevFisk – et projekt som kvantificerer stenrevs (et lavtliggende stenrev i den fotiske zone og et dybere liggende stenrev i den afotiske zone) betydning for fisk

Stenberg, C., Christoffersen, M., Aarestrup, K., Deurs, M. V., Støttrup, J., Nielsen, A., Andersen, N. G., Mariani, P., Baktoft, H., Pedersen, M. W., Dahl, K., Lundsteen, S., Stæhr, P., Rasmussen, M. B., Mohn, C., Møhlenberg, F., Hansen, F. T., Uhrenholt, T., Middelboe, A. L. & Mandviwalla, X. R., 2015.

Research output: Contribution to conferenceConference abstract for conferenceResearch

288 Downloads (Pure)

RevFisk – et projekt som kvantificerer stenrevs betydning for fisk

Stenberg, C., Christoffersen, M., Aarestrup, K., Deurs, M. V., Støttrup, J., Nielsen, A., Andersen, N. G., Mariani, P., Baktoft, H., Pedersen, M. W., Dahl, K., Lundsteen, S., Stæhr, P., Rasmussen, M. B., Mohn, C., Møhlenberg, F., Hansen, F. T., Uhrenholt, T., Middelboe, A. L. & Mandviwalla, X. R., 2015.

Research output: Contribution to conferencePosterResearch

Open Access
File
57 Downloads (Pure)

Robust statistical method in a single species age-structured state-space assessment model

Nielsen, A. & Berg, C. W., 2015. 2 p.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Open Access
File

Simulation testing the robustness of stock assessment models to error: some results from the ICES strategic initiative on stock assessment methods

Deroba, J. J., Butterworth, D. S., Methot, R. D., De Oliveira, J. A. A., Fernandez, C., Nielsen, A., Cadrin, S. X., Dickey-Collas, M., Legault, C. M., Ianelli, J., Valero, J. L., Needle, C. L., O'Malley, J. M., Chang, Y-J., Thompson, G. G., Canales, C., Swain, D. P., Miller, D. C. M., Hintzen, N. T., Bertignac, M. & 15 others, Ibaibarriaga, L., Silva, A., Murta, A., Kell, L. T., de Moor, C. L., Parma, A. M., Dichmont, C. M., Restrepo, V. R., Ye, Y., Jardim, E., Spencer, P. D., Hanselman, D. H., Blaylock, J., Mood, M. & Hulson, P. . J. F., 2015, In : ICES Journal of Marine Science. 72, 1, p. 19-30

Research output: Contribution to journalJournal articleResearchpeer-review

331 Downloads (Pure)

Sustainable development of the Nephrops fishery in the Kattegat-Skagerrak region

Frandsen, R., Eliasen, S. Q., Lövgren, J., Søvik, G., Feekings, J. P., Ulmestrand, M., Lund, H., Andersen, B. S., Axelsen, B. E., Bastardie, F., Berg, C. W., Bichel, N., Furevik, D., Jacobsen, J. B., Johansen, T., Jonasdottir, S., Jonsson, P., Jørgensen, T., Karlsen, J. D., Kleiven, A. R. & 8 others, Løkkeborg, S., Lundgren, B., Madsen, N., Munch-Petersen, S., Nielsen, A., Nielsen, J. R., Reeh, L. & Westgaard, J-I., 2015, Charlottenlund: National Institute of Aquatic Resources, Technical University of Denmark. 23 p. (DTU Aqua Report; No. 298-2015).

Research output: Book/ReportReportResearch

Open Access
File
142 Downloads (Pure)

The history of cod in Greenland: A major fishery collapse explained by archived DNA

Eg Nielsen, E., Bonanomi, S., Pellissier, L., Therkildsen, N. O., Hedeholm, R., Retzel, A., Olsen, S. M., Nielsen, A., Pampoulie, C., Hansen, J. H., Wisz, M. & Grønkjaer, P., 2015. 1 p.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Open Access
File
2014

Depth preference in released juvenile turbot Psetta maxima

Albertsen, C. M., Støttrup, J., Nielsen, A. & Christoffersen, M., 2014, In : Journal of Experimental Marine Biology and Ecology. 461, p. 179-184

Research output: Contribution to journalJournal articleResearchpeer-review

Effects of dietary fatty acids on the production and quality of eggs and larvae of Atlantic cod (Gadus morhua L.)

Røjbek, M., Støttrup, J., Jacobsen, C., Tomkiewicz, J., Nielsen, A. & Trippel, E. A., 2014, In : Aquaculture Nutrition. 20, 6, p. 654-666

Research output: Contribution to journalJournal articleResearchpeer-review

Estimation of time-varying selectivity in stock assessments using state-space models

Nielsen, A. & Berg, C. W., 2014, In : Fisheries Research. 158, p. 96-101

Research output: Contribution to journalJournal articleResearchpeer-review

155 Downloads (Pure)

Introducing time-varying natural mortality in the length-based assessment model for the Pandalus Borealis stock in ICES Div. IIIa and IVa east

Jørgensen, M., Munch-Petersen, S., Nielsen, A., Søvik, G., Ulmestrand, M., Devine, J. & Eigaard, O. R., 2014.

Research output: Contribution to conferencePaperResearch

Open Access
File
2013

Addressing challenges in single species assessments via a simple state-space assessment model.

Nielsen, A., 2013.

Research output: Contribution to conferenceConference abstract for conferenceResearch

A stochastic length-based assessment model for the Pandalus stock in Skagerrak and the Norwegian Deep

Nielsen, A., Munch-Petersen, S., Eigaard, O. R., Søvik, G. & Ulmestrand, M., 2013, In : Scientific Council Research Documents NAFO. 13/074, 12 p.

Research output: Contribution to journalConference articleResearch

1559 Downloads (Pure)

Strategies for fitting nonlinear ecological models in R, AD Model Builder, and BUGS

Bolker, B. M., Gardner, B., Maunder, M., Berg, C. W., Brooks, M., Comita, L., Crone, E., Cubaynes, S., Davies, T., Valpine, P. D., Ford, J., Gimenez, O., Kéry, M., Kim, E. J., Lennert-Cody, C., Magnusson, A., Martell, S., Nash, J., Nielsen, A., Regetz, J. & 2 others, Skaug, H. & Zipkin, E., 2013, In : Methods in Ecology and Evolution. 4, 6, p. 501-512

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
2012

Does predation by grey seals (Halichoerus grypus) affect Bothnian Sea herring stock estimates?

Gårdmark, A., Östman, Ö., Nielsen, A., Lundström, K., Karlsson, O., Pönni, J. & Aho, T., 2012, In : ICES Journal of Marine Science. 69, 8, p. 1448-1456

Research output: Contribution to journalJournal articleResearchpeer-review

2011
479 Downloads (Pure)

AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models

Fournier, D. A., Skaug, H. J., Ancheta, J., Ianelli, J., Magnusson, A., Maunder, M., Nielsen, A. & Sibert, J., 2011, In : Optimization Methods and Software. 27, 2, p. 233-249

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File

Depleted marine fish stocks and ecosystem-based management: on the road to recovery we need to be precautionary

Gårdmark, A., Nielsen, A., Floeter, J. & Möllmann, C., 2011, In : ICES Journal of Marine Science. 68, 1, p. 212-220

Research output: Contribution to journalJournal articleResearchpeer-review

Effects of mammal predation on small pelagic fish

Gårdmark, A., Östman, Ö., Lundström, K., Karlsson, O., Pönni, J., Lindegren, M., Nielsen, A., Kaljuste, O. & Aho, T., 2011.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Estimation methods for nonlinear state-space models in ecology

Pedersen, M. W., Berg, C. W., Thygesen, U. H., Nielsen, A. & Madsen, H., 2011, In : Ecological Modelling. 222, 8, p. 1394-1400

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)

Fishing power increases from technological development in the Faroe Islands longline fishery

Eigaard, O. R., Thomsen, B., Hovgard, H., Nielsen, A. & Rijnsdorp, A. D., 2011, In : Canadian Journal of Fisheries and Aquatic Sciences. 68, 11, p. 1970-1982

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)

Postrelease survival, vertical and horizontal movements, and thermal habitats of five species of pelagic sharks in the central Pacific Ocean

Musyl, M. K., Brill, R. W., Curran, D. S., Fragoso, N. M., McNaughton, L. M., Nielsen, A., Kikkawa, B. S. & Moyes, C. D., 2011, In : Fishery Bulletin. 109, 4, p. 341-368

Research output: Contribution to journalJournal articleResearchpeer-review

2010

Ecological forecasting under climate change: the case of Baltic cod

Lindegren, M., Möllmann, C., Nielsen, A., Brander, K., MacKenzie, B. & Stenseth, N. C., 2010, In : Royal Society of London. Proceedings. Biological Sciences. 277, 1691, p. 2121-2130

Research output: Contribution to journalJournal articleResearchpeer-review

Ecological forecasting under climate change - the case of Baltic cod

Lindegren, M., Möllmann, C., Nielsen, A., Brander, K. & MacKenzie, B., 2010.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Incorporating sea-surface temperature to the light-based geolocation model TrackIt

Lam, C. H., Nielsen, A. & Sibert, J. R., 2010, In : Marine Ecology - Progress Series. 419, p. 71-84

Research output: Contribution to journalJournal articleResearchpeer-review

Movements of olive ridley sea turtles Lepidochelys olivacea and associated oceanographic features as determined by improved light-based geolocation

Swimmer, Y., McNaughton, L., Foley, D., Moxey, L. & Nielsen, A., 2010, In : Endangered Species Research. 10, 1-3, p. 245-254

Research output: Contribution to journalJournal articleResearchpeer-review

2009

Lessons from a prototype geolocation problem

Thygesen, U. H. & Nielsen, A., 2009, Tagging and Tracking of Marine Animals with Electronic Devices. Springer, Vol. Part 2: Geolocation Methods. p. 257-276 452 p. (Reviews: Methods and Technologies in Fish Biology and Fisheries, Vol. 9).

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

Preventing the collapse of the Baltic cod stock through an ecosystem-based management approach

Lindegren, M., Möllmann, C., Nielsen, A. & Stenseth, N. C., 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 34, p. 14722-14727

Research output: Contribution to journalJournal articleResearchpeer-review

Removing bias in latitude estimated from solar irradiance time series

Sibert, J. R., Nielsen, A., Musyl, M., Leroy, B. & Evans, K., 2009, Tagging and Tracking of Marine Animals with Electronic Devices: Geolocation Methods. Springer, Vol. 2. p. 311-322

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

State space model for light based tracking of marine animals: validation on swimming and diving creatures

Nielsen, A., Sibert, J., Kohin, S. & Musyl, M., 2009, Tagging and Tracking of Marine Animals with Electronic Devices: Geolocation Methods. Springer, Vol. 2. p. 295-309

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review