Research output per year
Research output per year
Personal profile
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
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Research output
- 4 Journal article
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SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects
Ferrer Florensa, A., Almagro Armenteros, J. J., Nielsen, H., Aarestrup, F. M. & Clausen, P. T. L. C., 2024, In: NAR Genomics and Bioinformatics. 6, 3, 10 p., lqae106.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile11 Downloads (Pure) -
ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes
Florensa, A. F., Kaas, R. S., Clausen, P. T. L. C., Aytan-Aktug, D. & Aarestrup, F. M., 2022, In: Microbial Genomics. 8, 1, 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile532 Downloads (Pure) -
Automated download and clean-up of family specific databases for kmer-based virus identification
Allesøe, R. L., Lemvigh, C. K., Phan, M. V. T., Clausen, P. T. L. C., Florensa, A. F., Koopmans, M. P. G., Lund, O. & Cotten, M., 2021, In: Bioinformatics. 37, 5, p. 705–710Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile226 Downloads (Pure) -
ResFinder 4.0 for predictions of phenotypes from genotypes
Bortolaia, V., Kaas, R. S., Ruppe, E., Roberts, M. C., Schwarz, S., Cattoir, V., Philippon, A., Allesoe, R. L., Rebelo, A. R., Florensa, A. F., Fagelhauer, L., Chakraborty, T., Neumann, B., Werner, G., Bender, J. K., Stingl, K., Nguyen, M., Coppens, J., Xavier, B. B. & Malhotra-Kumar, S. & 15 others, , 2020, In: Journal of Antimicrobial Chemotherapy. 75, 12, p. 3491-3500 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile212 Downloads (Pure)
Projects
- 1 Active
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Modeling of biological sequences for prediction and characterization of pathogenicity using deep learning
Ferrer Florensa, A. (PhD Student), Aarestrup, F. M. (Main Supervisor) & Almagro Armenteros, J. J. (Supervisor)
15/04/2022 → 14/04/2025
Project: PhD