1996 …2022

Research output per year

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Research Output

2016

Predictable tuning of protein expression in bacteria

Bonde, M., Pedersen, M., Klausen, M. S., Ingemann Jensen, S., Wulff, T., Harrison, S. J., Nielsen, A. T., Herrgard, M. & Sommer, M. O. A., 2016, In : Nature Methods. 13, p. 233-236 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Processes for the production of hydroxycinnamic acids using polypeptides having tyrosine ammonia lyase activity.

Jendresen, C. B., Siedler, S., Stahlhut, S. G. & Nielsen, A. T., 21 Jan 2016, IPC No. C12N 9/ 88 A I, Patent No. WO2016008886, 21 Jan 2016, Priority date 14 Jul 2014, Priority No. EP20140176975

Research output: Patent

Open Access
File
131 Downloads (Pure)

Production of Sulfated Organic Compounds in Cell Factories

Jendresen, C. B. & Nielsen, A. T., 2016. 1 p.

Research output: Contribution to conferencePosterResearch

Surface Enhanced Raman Spectroscopy detection of p-coumaric acid from cell supernatant using gold-capped silicon nanopillar substrates

Morelli, L., Jendresen, C. B., Burger, R., Rindzevicius, T., Nielsen, A. T. & Boisen, A., 2016. 1 p.

Research output: Contribution to conferencePosterResearchpeer-review

Open Access
File
162 Downloads (Pure)

Surface Enhanced Raman Spectroscopy detection of p-coumaric acid from cell supernatant using gold-capped silicon nanopillar substrates

Morelli, L., Jendresen, C. B., Burger, R., Rindzevicius, T., Nielsen, A. T. & Boisen, A., 2016.

Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

Thermophilic acetogens for the production of higher value compounds from (biomass derived) waste gas streams

Redl, S., Jensen, T. Ø. & Nielsen, A. T., 2016. 1 p.

Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

Open Access
File
136 Downloads (Pure)

The Ssr protein (T1E_1405) from Pseudomonas putida DOT-T1E enables oligonucleotide-based recombineering in platform strain P. putida EM42

Aparicio, T., Ingemann Jensen, S., Nielsen, A. T., Victor de Lorenzo, V. D. & Martínez-García, E., 2016, In : Biotechnology Journal. 11, 10, p. 1309-1319 31 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2 Downloads (Pure)
2015

CasEMBLR: Cas9-Facilitated Multiloci Genomic Integration of in Vivo Assembled DNA Parts in Saccharomyces cerevisiae

Jakociunas, T., Rajkumar, A. S., Zhang, J., Arsovska, D., Rodriguez Prado, E. A., Jendresen, C. B., Skjødt, M. L., Nielsen, A. T., Borodina, I., Jensen, M. K. & Keasling, J., 2015, In : A C S Synthetic Biology. 4, 11, p. 1226-1234 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

CrEdit: CRISPR mediated multi-loci gene integration in Saccharomyces cerevisiae

Ronda, C., Maury, J., Jakociunas, T., Jacobsen, S. A. B., Germann, S. M., Harrison, S. J., Borodina, I., Keasling, J. D., Jensen, M. K. & Nielsen, A. T., 2015, In : Microbial Cell Factories. 14, 97, 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
427 Downloads (Pure)

Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli

Rau, M. H., Nielsen, A. T. & Long, K., 2015, In : B M C Genomics. 16, 1051, 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
284 Downloads (Pure)

Differential expression of small RNAs under chemical stress and fed-batch fermentation in Escherichia coli

Rau, M. H., Bojanovic, K., Nielsen, A. T. & Long, K. S., 2015, Book of Abstracts. DTU's Sustain Conference 2015. Lyngby: Technical University of Denmark, 1 p. B-8

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

Open Access
File
55 Downloads (Pure)

Differential Expression Of Small Rnas Under Chemical Stress And Fed-batch Fermentation In Escherichia Coli

Rau, M. H., Bojanovic, K., Nielsen, A. T. & Long, K., 2015, The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, p. 75-75

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

Editorial overview: Chemical biotechnology: Interdisciplinary concepts for modern biotechnological production of biochemicals and biofuels

Bornscheuer, U. T. & Nielsen, A. T., 2015, In : Current Opinion in Biotechnology. 35, p. 133-134 2 p.

Research output: Contribution to journalEditorialResearchpeer-review

Highly Active and Specific Tyrosine Ammonia-Lyases from Diverse Origins Enable Enhanced Production of Aromatic Compounds in Bacteria and Saccharomyces cerevisiae

Jendresen, C. B., Stahlhut, S. G., Li, M., Gaspar, P., Siedler, S., Förster, J., Maury, J., Borodina, I. & Nielsen, A. T., 2015, In : Applied and Environmental Microbiology. 81, 13, p. 4458-4476 19 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
500 Downloads (Pure)

Moorella Strains for the Production of Biochemicals from Syngas

Redl, S., Jensen, T. Ø. & Nielsen, A. T., 2015. 1 p.

Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

Open Access
File
79 Downloads (Pure)

Moorella Strains for the Production of Biochemicals from Syngas

Redl, S., Jensen, T. Ø. & Nielsen, A. T., 2015. 1 p.

Research output: Contribution to conferenceConference abstract for conferenceResearchpeer-review

Seven gene deletions in seven days: fast generation of Escherichia coli strains tolerant to acetate and osmotic stress

Ingemann Jensen, S., Lennen, R., Herrgard, M. & Nielsen, A. T., 2015, In : Scientific Reports. 5, 10 p., 17874.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
229 Downloads (Pure)
2014

Accelerating Genome Editing in CHO Cells Using CRISPR Cas9 and CRISPy, a Web-Based Target Finding Tool

Ronda, C., Pedersen, L. E., Hansen, H. G., Beuchert Kallehauge, T., Betenbaugh, M., Nielsen, A. T. & Kildegaard, H. F., 2014, In : Biotechnology and Bioengineering (Print). 111, 8, p. 1604-1616

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)

Increased tolerance towards serine obtained by adaptive laboratory evolution

Mundhada, H., Seoane, J. M., Koza, A., Herrgard, M., Feist, A. & Nielsen, A. T., 2014, Proceedings of SIMB Annual meeting 2014. P57

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

Open Access
File
101 Downloads (Pure)

Trash to treasure: Production of biofuels and commodity chemicals via syngas fermenting microorganisms

Latif, H., Zeidan, A., Nielsen, A. T. & Zengler, K., 2014, In : Current Opinion in Biotechnology. 27, p. 79-87

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
1421 Downloads (Pure)
2013

Comparative study on aptamers as recognition elements for antibiotics in a label-free all-polymer biosensor

Dapra, J., Lauridsen, L. H., Nielsen, A. T. & Rozlosnik, N., 2013, In : Biosensors and Bioelectronics. 43, 1, p. 315-320

Research output: Contribution to journalJournal articleResearchpeer-review

2 Downloads (Pure)
2011

Characterization of a Feedback-Resistant Mevalonate Kinase from the Archaeon Methanosarcina mazei

Primak, Y. A., Du, M., Miller, M. C., Wells, D. H., Nielsen, A. T., Weyler, W. & Beck, Z. Q., 2011, In : APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 77, 21, p. 7772-7778 7 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2010

A Bistable Switch and Anatomical Site Control Vibrio cholerae Virulence Gene Expression in the Intestine

Nielsen, A. T., Dolganov, N. A., Rasmussen, T., Otto, G., Miller, M. C., Felt, S. A., Torreilles, S. & Schoolnik, G. K., 2010, In : P L o S Pathogens. 6, 9, 23 p., e1001102.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
329 Downloads (Pure)
2007

vpsA- and luxO-independent biofilms of Vibrio cholerae

Mueller, J., Miller, M. C., Nielsen, A. T., Schoolnik, G. K. & Spormann, A. M., 2007, In : FEMS Microbiology Letters. 275, 2, p. 199-206 8 p.

Research output: Contribution to journalLetterResearchpeer-review

2006

RpoS controls the Vibrio cholerae mucosal escape response

Nielsen, A. T., Dolganov, N. A., Otto, G., Miller, M. C., Wu, C. Y. & Schoolnik, G. K., 2006, In : P L o S Pathogens. 2, 10, p. 933-948 16 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
File
56 Downloads (Pure)
2004

The Vibrio cholerae chitin utilization program

Meibom, K. L., Li, X. B., Nielsen, A. T., Wu, C-Y., Roseman, S. & Schoolnik, G. K., 2004, In : Proceedings of the National Academy of Sciences of the United States of America. 101, 8, p. 2524-2529 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2003

Single nucleotide polymorphism genotyping using locked nucleic acid (LNA)

Mouritzen, P., Nielsen, A. T., Pfundheller, H. M., Choleva, Y., Kongsbak, L. & Møller, S., 2003, In : Expert Review of Molecular Diagnostics. 3, 1, p. 27-38 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2002

In situ examination of microbial populations in a model drinking water distribution system

Martiny, A. C., Nielsen, A. T., Arvin, E., Molin, S. & Albrechtsen, H-J., 2002, In : Water Science and Technology: Water Supply. 2, 3, p. 283-288

Research output: Contribution to journalJournal articleResearchpeer-review

1 Downloads (Pure)
2001

In situ identification of polyphosphate- and polyhydroxyalkanoate-accumulating traits for microbial populations in a biological phosphorus removal process

Liu, W-T., Nielsen, A. T., Wu, JH., Tsai, C. S., Matsuo, Y. & Molin, S., 2001, In : Environmental Microbiology. 3, 2, p. 110-122 13 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Multiplex SNP genotyping using Locked Nucleic Acid and microfluidics

Choleva, Y., Nørholm, M., Pedersen, S., Mouritzen, P., Høiby, P. E., Nielsen, A. T., Møller, S., Jakobsen, M. H. & Kongsbak, L., 2001, In : SLAS TECHNOLOGY: Translating Life Sciences Innovation. 6, 4, p. XVI-XVII 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

2000

Monitoring of cellular activities in multispecies bacterial surface communities

Molin, S., Christensen, B. B., Sternberg, C., Licht, T. R., Hansen, M. C., Nielsen, T. T., Ramos, C., Andersen, J. B., Nielsen, A. T. & Givskov, M. C., 2000, Atlantic Canada Society for Microbial Ecology. Bell, C. R., Brylinsky, M. & Johnson-Green, P. (eds.). Halifax, Canada: Atlantic Canada Society for Microbial Ecology, p. 497-502

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearch

Quantification of biofilm structures by the novel computer program COMSTAT

Heydorn, A., Nielsen, A. T., Hentzer, M., Sternberg, C., Givskov, M. C., Ersbøll, B. K. & Molin, S., 2000, In : Microbiology-Uk. 146, p. 2395-2407

Research output: Contribution to journalJournal articleResearchpeer-review

Role of commensal relationships on the spatial structure of a surface-attached microbial consortium

Nielsen, A. T., Tolker-Nielsen, T., Barken, K. B. & Molin, S., 2000, In : Environmental Microbiology. 2, 1, p. 59-68

Research output: Contribution to journalJournal articleResearchpeer-review

1999

Distribution of bacterial growth activity in flow-chamber biofilms

Sternberg, C., Christensen, B. B., Johansen, T., Nielsen, A. T., Andersen, J. B., Givskov, M. C. & Molin, S., 1999, In : Applied and Environmental Microbiology. 65, 9, p. 4108-4117

Research output: Contribution to journalJournal articleResearchpeer-review

Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor

Nielsen, A. T., Liu, W-T., Filipe, C., Grady, L., Molin, S. & Stahl, D. A., 1999, In : Applied and Environmental Microbiology. 65, 3, p. 1251-1258

Research output: Contribution to journalJournal articleResearchpeer-review

Molecular tools for study of biofilm physiology

Christensen, B. B., Sternberg, C., Andersen, J. B., Palmer, R. J., Nielsen, A. T., Givskov, M. C. & Molin, S., 1999, Methods in Enzymology. Academic Press, p. 20-42

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review