Section for Synthetic Biology

Active

Modeling Sustainability Performance of Bio-based Solutions

Alenfalk, K. A. T. (PhD Student), Clemmensen, L. K. H. (Main Supervisor), Mansourvar, M. (Supervisor) & Sukumara, S. (Supervisor)

01/10/2024 → 30/09/2027

Project: PhD

Multi-Scale Models for Sustainable Bioproduction

Cohen, S. (PhD Student), Sukumara, S. (Main Supervisor), Mansourvar, M. (Supervisor) & Yang, L. (Supervisor)

15/09/2024 → 14/09/2027

Project: PhD

Integrated model for up- and downstream bioprocess intensification

Pfaff, D. (PhD Student), Woodley, J. (Main Supervisor), Kager, J. (Supervisor), Ruiz, J. L. M. (Supervisor) & Yang, L. (Supervisor)

01/09/2024 → 31/08/2027

Project: PhD

Strain robustness and physiology characterization in scale-down reactors

Semenov Petrov, M. (PhD Student), Förster, J. (Main Supervisor), Kager, J. (Supervisor), Ruiz, J. L. M. (Supervisor) & Yang, L. (Supervisor)

01/08/2024 → 31/07/2027

Project: PhD

High-thorughput Adaptive Laboratory Evolution for identification and further optimization of alternative yeasts for lipid precursors accumulation using salineresidues containing SCFAs and methanol

Mastrodima, M. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Iosca, G. (Supervisor) & Tomás-Pejó, E. (Supervisor)

01/08/2024 → 31/07/2027

Project: PhD

Advancing Debaryomyces hansenii for production of lipid precursors from algal biomass in open (non-sterile) fermentations

Recchia, S. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Iosca, G. (Supervisor) & Garcia, A. D. M. (Supervisor)

01/08/2024 → 31/07/2027

Project: PhD

Assessing the physiological, regulatory and gene expressionchanges affecting global microbial metabolism uponfermentation process upscaling: a multi-omics study

Plaza, L. G. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Frandsen, R. J. N. (Supervisor) & Yang, L. (Supervisor)

01/08/2024 → 31/07/2027

Project: PhD

Advancing Precision Fermentation: A Graph-Based Toolkit for Optimizing Fungal Microorganisms in Valuable Compound Production

Ko, J.-T. (PhD Student), Hoof, J. B. (Supervisor), Meyer, A. S. (Supervisor) & Santos Delgado, A. (Main Supervisor)

15/07/2024 → 14/07/2027

Project: PhD

BASF-DTU PhD Secondary metabolite gene clusters

Holm, V. (PhD Student), Mortensen, U. H. (Main Supervisor), Larsen, T. O. (Supervisor), Meyer, A. S. (Supervisor) & Haefner, S. (Supervisor)

01/02/2024 → 31/01/2027

Project: PhD

BASF-DTU Maximizing recombinant protein overexpression and expression efficacy prediction

Lund, H. M. D. (PhD Student), Meyer, A. S. (Main Supervisor), Larsen, T. O. (Supervisor), Mortensen, U. H. (Supervisor) & Haefner, S. (Supervisor)

01/02/2024 → 31/01/2027

Project: PhD

Generative AI and Machine Learning for Protein Design and Optimization

Funk, J. (PhD Student), Acevedo-Rocha, C. G. (Supervisor) & Jenkins, T. P. (Main Supervisor)

01/01/2024 → 31/12/2026

Project: PhD

Discovery of new fungal enzymes for degradation of thermoset plastics

Jagrelius, R. H. (PhD Student), Mortensen, U. H. (Main Supervisor) & Westh, P. (Supervisor)

01/10/2023 → 30/09/2026

Project: PhD

Bio-based alternatives to chemicals for textile applications, recovered from cork industrial by-products using sustainable green technologies

Campos, L. D. G. (PhD Student), Mussatto, S. I. (Main Supervisor), Henriques, M. H. F. (Supervisor), Silva, C. J. D. S. M. D. (Supervisor) & Veloso, A. C. A. (Supervisor)

01/08/2023 → 31/07/2026

Project: PhD

A new bias-free variant calling and genotyping method using deep learning and pangenome data

Tavakoli, S. (PhD Student), Mansourvar, M. (Supervisor), Frandsen, R. J. N. (Main Supervisor), Workman, C. T. (Supervisor) & Garg, S. (Supervisor)

15/12/2022 → 14/12/2025

Project: PhD

Boosting the production of biodegradable plastics through an advanced biomanufacturing process and omics technologies

Ruengsrichaiya, B. (PhD Student), Mussatto, S. I. (Main Supervisor) & Workman, C. T. (Supervisor)

01/11/2022 → 31/10/2025

Project: PhD

Fluorescence microscopy for in-depth insights into microbial adaptations at a single-cell level

Della Rosa, M. E. (PhD Student), Krühne, U. (Supervisor), Kilstrup, M. (Main Supervisor) & Morth, J. P. (Supervisor)

01/07/2022 → 30/06/2025

Project: PhD

Experimental design for actinomycete engineering

Møller, T. A. (PhD Student), Weber, T. (Main Supervisor), Booth, T. J. (Supervisor) & Frandsen, R. J. N. (Supervisor)

01/06/2022 → 07/03/2026

Project: PhD

Applying advanced HT technologies and adaptive laboratory evolution to identify commonevolution patterns across yeast species in industrial production environments

Torres Montero, P. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Feist, A. (Supervisor) & Worberg, A. (Supervisor)

01/06/2022 → 31/05/2025

Project: PhD

Intensification of recombinant protein production for efficient scale-up

Nielsen, M. B. (PhD Student), Meyer, A. S. (Main Supervisor), Ruiz, J. L. M. (Supervisor), Nagy, T. (Supervisor) & Arnau, J. (Supervisor)

01/06/2022 → 31/05/2025

Project: PhD

High energy biofuel production with fungal Polyketide synthases

Chen, L. (PhD Student), Cruz-Morales, P. (Main Supervisor) & Frandsen, R. J. N. (Supervisor)

01/05/2022 → 18/01/2026

Project: PhD

Finished

Advancing the Genetic Engineering Landscape in Filamentous Fungi: Development of Novel Tools and High-Throughput Technologies.

Gómez, M. M. (PhD Student), Mortensen, U. H. (Main Supervisor) & Henrissat, B. P. (Supervisor)

01/05/2022 → 30/04/2025

Project: PhD

Synthetic Biology of Natural Products

Gadar Lopez, A. E. (PhD Student), Cruz-Morales, P. (Main Supervisor), Keasling, J. (Supervisor), Mortensen, U. H. (Supervisor), Alberti, F. (Examiner) & Genilloud, O. (Examiner)

01/05/2022 → 30/04/2025

Project: PhD

Literate Programming of Biology

Levassor, L. (PhD Student), Frandsen, R. J. N. (Main Supervisor), Madsen, J. (Supervisor), Weber, T. (Supervisor), Carbonell, P. (Examiner) & Lübeck, M. (Examiner)

01/04/2022 → 31/03/2025

Project: PhD

Investigation of the Rhizosphere Chemistry of Filamentous Fungi in Relation to Benificial Crop Outcomes

Vertot, M. (PhD Student), Frisvad, J. C. (Main Supervisor), Andersen, A. J. C. (Supervisor), Stadler, M. (Examiner) & Sørensen, J. L. (Examiner)

15/12/2021 → 15/03/2025

Project: PhD

Scale-up of 3-hydroxypropanoic acid production in strains of Corynebacterium glutamicum equipped with genetically encoded sensors (ScaleSense)

Diez Callau, A. (PhD Student), Woodley, J. (Main Supervisor), Junicke, H. (Supervisor) & Seibold, G. (Supervisor)

01/12/2021 → 29/04/2025

Project: PhD

Data-Driven Analysis of C1 Metabolism in Acetogens

Carrasco Muriel, J. (PhD Student), Nielsen, L. K. (Main Supervisor), Mansourvar, M. (Supervisor), Kim, H. U. (Examiner) & Michael Spormann, A. (Examiner)

01/09/2021 → 11/03/2025

Project: PhD

Endophytic pseudomonas as a novel source of Biological Control Agents: Mechanistic approach to study and improve strain proformance against cereal fungal diseases

Chantzis, E. (PhD Student), Jelsbak, L. (Main Supervisor), Frandsen, R. J. N. (Supervisor) & Madriz-Ordenana, K. (Supervisor)

01/04/2021 → 31/03/2024

Project: PhD

Establishing non-conventional yeasts as superior cell factories for recombinant protein production from complex feedstocks

Duran, M. E. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Prista, C. (Examiner), Navarrete Román, C. (Supervisor) & Tomás-Pejó, E. (Examiner)

01/03/2021 → 06/09/2024

Project: PhD

Microbial conversion of CO2 into value-added products

Caivano, A. (PhD Student), Mussatto, S. I. (Main Supervisor), Winden, W. A. V. (Supervisor), Aryal, N. (Examiner) & Sousa, D. (Examiner)

01/02/2021 → 07/05/2024

Project: PhD

Towards Bioinsecticide Production in the Moss Physcomitrium patens

Astorga Rios, F. J. (PhD Student), Simonsen, H. T. (Main Supervisor), Frandsen, R. J. N. (Main Supervisor), Simonsen, H. T. (Supervisor), E. Fraley, A. (Examiner), Patron, N. (Examiner) & Mortensen, U. H. (Examiner)

01/02/2021 → 31/08/2024

Project: PhD

Bioprocess intensification for xylitol production from renewable resources

Ordeñana Manso, J. (PhD Student), Mussatto, S. I. (Main Supervisor), Yamakawa, C. K. (Supervisor), González, J. M. D. (Examiner) & Medina, C. O. M. (Examiner)

01/02/2021 → 07/05/2024

Project: PhD

Development and Integration of Sustainable Processes for Biomass Fractionation

Balaguer Moya, E. (PhD Student), Mussatto, S. I. (Main Supervisor), Dragone, G. M. (Supervisor) & Pereira, G. A. G. (Examiner)

01/02/2021 → 16/02/2024

Project: PhD

Design and application of microbial consortia for enhanced biomanufacturing

Rama, E. (PhD Student), Mussatto, S. I. (Main Supervisor), Yamakawa, C. K. (Supervisor), Varrone, C. (Examiner) & Zangirolami, T. C. (Examiner)

01/02/2021 → 10/06/2024

Project: PhD

Engineering feedback regulation for recombinant protein production

Kastberg, L. L. B. (PhD Student), Mortensen, U. H. (Supervisor), Förster, J. (Main Supervisor), Sudarsan, S. (Supervisor), Ceroni, F. (Examiner) & Mattanovich, D. (Examiner)

01/01/2021 → 14/01/2025

Project: PhD

BiobaseDK: Biobased Solutions to Promote Sustainability

Mussatto, S. I. (PI), Dragone, G. M. (Project Participant), Yamakawa, C. K. (Project Participant), Balaguer Moya, E. (PhD Student), Caivano, A. (PhD Student), Manso, J. O. (PhD Student) & Rama, E. (PhD Student)

01/01/2021 → 31/01/2024

Project: Research

Combo-enzymatics of Penicillium sp. and Talaromyces sp.

Wang, C. (PhD Student), Meyer, A. S. (Main Supervisor), Barrett, K. (Supervisor), Frisvad, J. C. (Supervisor) & Ren, Y. (Supervisor)

01/12/2020 → 30/11/2023

Project: PhD

Full genome sequences of native Polynesian Apiales plants to characterize novel terpenoid enzymes

Bai, M. (PhD Student), Simonsen, H. T. (Main Supervisor) & Ruiz, J. L. M. (Supervisor)

01/10/2020 → 30/09/2023

Project: PhD

High-throughput design and screening of novel yeast cell factories for advanced biotherapeutics

Frost, A. T. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Workman, C. T. (Supervisor), Siewers, V. (Examiner) & Tomás-Pejó, E. (Examiner)

01/10/2020 → 10/04/2024

Project: PhD

Development of an ultra high-throughput platform for cell factory selection and recombinant protein screening

Unger, A. (PhD Student), Ruiz, J. L. M. (Main Supervisor), Worberg, A. (Supervisor), Ledesma-Amaro, R. (Examiner) & Suárez Díez, M. (Examiner)

01/10/2020 → 10/04/2024

Project: PhD

Development of advanced co-cultivation systems for an improved fermentation performance of complex substrates

van der Maas, L. N. L. (PhD Student), Jensen, S. I. (Main Supervisor), Seibold, G. (Supervisor), Robinson, S. (Examiner) & Sørensen, S. J. (Examiner)

01/10/2020 → 15/07/2024

Project: PhD

An Active Learning Approach for the Exploration of Genetic Landscapes for MEtabolic Engineering

Cachera, P.P.-Y. J. (PhD Student), Jensen, M. K. (Main Supervisor), Mortensen, U. H. (Supervisor), Alper, H. (Examiner) & Ceroni, F. (Examiner)

01/09/2020 → 11/03/2024

Project: PhD

Model guided design of microbial consortia for mixed-culture fermentations

Bras, J. E. (PhD Student), Workman, C. T. (Main Supervisor), Bachmann, H. (Examiner), Machado, D. (Examiner), Zeidan, A. (Supervisor) & Vindeløv, J. T. (Supervisor)

01/05/2020 → 05/11/2024

Project: PhD

Improving the production of sustainable industrial biochemicals

Chandrasekaran, P. (PhD Student), Nielsen, A. T. (Supervisor), Workman, C. T. (Main Supervisor), Mundhada, H. (Supervisor), Noack, S. (Examiner) & Papadakis, M. (Examiner)

01/03/2020 → 16/02/2024

Project: PhD

Biosensors for analyses of target gene expression at the level of transcription in Corynebeacterium glutamicum strains and optimization of sugar-dependent switches

Weiß, T. (PhD Student), Seibold, G. (Main Supervisor), Kilstrup, M. (Supervisor), Sonnenschein, N. (Supervisor), Carlquist, P. M. (Examiner) & Schwab, C. (Examiner)

01/12/2019 → 15/07/2024

Project: PhD

Understanding and overcoming physiological stress responses in Yarrowia lipolytica to dissolved O2 and CO2 in fermentation processes

Mussatto, S. I. (PI), Dragone, G. M. (Project Participant) & Yamakawa, C. K. (Project Participant)

01/10/2019 → 31/12/2022

Project: Research

Genetically Engineered NADPH Biosensors for High Throughput Optimization of Corynebacterium Glutamicum Production Stains and Optimization of Cultivation Conditions in Bioreactors

Hartmann, F. S. F. (PhD Student), De Biase, D. (Examiner), Johanson, T. (Examiner), Seibold, G. (Main Supervisor), Gernaey, K. V. (Supervisor) & Woodley, J. (Supervisor)

01/09/2019 → 03/02/2023

Project: PhD

The role Pencillium expansum produced secondary metabolites for microbial community structure and development

Clemmensen, S. E. (PhD Student), Frandsen, R. J. N. (Main Supervisor), Frisvad, J. C. (Supervisor), Larsen, T. O. (Supervisor), Lübeck, M. (Examiner) & Collemare, J. (Examiner)

01/08/2019 → 10/04/2024

Project: PhD

Fungal quinone batteries for storing sustainable energy

Christiansen, J. V. (PhD Student), Frisvad, J. C. (Main Supervisor) & Larsen, T. O. (Supervisor)

01/05/2019 → 30/09/2022

Project: PhD

Building a comprehensive fungal gene catalogue of use in human diseases

Chen, W. (PhD Student), Hoof, J. B. (Main Supervisor), Andersen, B. (Supervisor) & Banerjee, S. (Supervisor)

01/12/2018 → 02/03/2023

Project: PhD

Development of yeast cell factories for efficient and affordable production of blood substitutes by microbial fermentation

Jacobsen, I. H. (PhD Student), Ruiz, J. L. M. (Main Supervisor) & Worberg, A. (Supervisor)

01/12/2018 → 30/09/2022

Project: PhD

Section for Synthetic Biology

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