• Søltofts Plads, Bygning 221

    DK-2800 Kgs. Lyngby

    Denmark

Research Output

2020

A comparative genomics study of 23 Aspergillus species from section Flavi

Kjærbølling, I., Vesth, T. C., Frisvad, J. C., Nybo, J. L., Theobald, S., Kildgaard, S., Petersen, T. I., Kuo, A., Sato, A., Lyhne, E. K., Kogle, M. E., Wiebenga, A., Kun, R. S., Lubbers, R. J. M., Mäkelä, M. R., Barry, K., Chovatia, M., Clum, A., Daum, C., Haridas, S. & 17 others, He, G., LaButti, K., Lipzen, A., Mondo, S., Pangilinan, J., Riley, R., Salamov, A., Simmons, B. A., Magnuson, J. K., Henrissat, B., Mortensen, U. H., Larsen, T. O., de Vries, R. P., Grigoriev, I. V., Machida, M., Baker, S. E. & Andersen, M. R., 2020, In : Nature Communications. 11, 1, 12 p., 1106.

Research output: Contribution to journalJournal articleResearchpeer-review

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A Computer Vision Algorithm for the Digitalization of Colorimetric Lateral Flow Assay Readouts

Pezzarossa, L., Preus, S. I., Svendsen, W. E. & Madsen, J., 2020, 2020 Symposium on Design, Test, Integration & Packaging of MEMS and MOEMS (DTIP). IEEE, 6 p.

Research output: Chapter in Book/Report/Conference proceedingArticle in proceedingsResearchpeer-review

Acrophiarin (antibiotic S31794/F-1) from Penicillium arenicola shares biosynthetic features with both Aspergillus- and Leotiomycete-type echinocandins

Lan, N., Perlatti, B., Kvitek, D. J., Wiemann, P., Harvey, C. J. B., Frisvad, J. C., An, Z. & Bills, G. F., 2020, In : Environmental Microbiology. 22, 6, p. 2292-2311 20 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Acurin A, a novel hybrid compound, biosynthesized by individually translated PKS- and NRPS-encoding genes in Aspergillus aculeatus

Wolff, P. B., Nielsen, M. L., Slot, J. C., Andersen, L. N., Petersen, L. M., Isbrandt, T., Holm, D. K., Mortensen, U. H., Nødvig, C. S., Larsen, T. O. & Hoof, J. B., 2020, In : Fungal Genetics and Biology. 139, 10 p., 103378.

Research output: Contribution to journalJournal articleResearchpeer-review

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A dynamic model for spread of livestock-associated methicillin-resistant Staphylococcus aureus on a pig farm, incorporating bacterial load and human exposure through air

Sørensen, A. I. V., Hansen, J. E. & Halasa, T., 2020, In : Journal of Theoretical Biology. 505, 20 p., 110402.

Research output: Contribution to journalJournal articleResearchpeer-review

Antidiabetic xanthones with α-glucosidase inhibitory activities from an endophytic Penicillium canescens

Malik, A., Ardalani, H., Anam, S., McNair, L. M., Kromphardt, K. J. K., Frandsen, R. J. N., Franzyk, H., Staerk, D. & Kongstad, K. T., 2020, In : Fitoterapia. 142, 8 p., 104522.

Research output: Contribution to journalJournal articleResearchpeer-review

Author Correction: The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants (Nature Ecology & Evolution, (2020), 10.1038/s41559-020-1221-7)

Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., Xu, X. & 4 others, Liu, X., Van de Peer, Y., Melkonian, M. & Liu, H., 2020, (Accepted/In press) In : Nature Ecology & Evolution. 1 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access

Changes in the microbiome of mariculture feed organisms after treatment with a potentially probiotic strain of Phaeobacter inhibens

Dittmann, K. K., Rasmussen, B. B., Melchiorsen, J., Sonnenschein, E. C., Gram, L. & Bentzon-Tilia, M., 2020, In : Applied and Environmental Microbiology. 86, 14, 15 p., e00499-20.

Research output: Contribution to journalJournal articleResearchpeer-review

Cheaters shape the evolution of phenotypic heterogeneity in Bacillus subtilis biofilms

Martin, M., Dragoš, A., Otto, S. B., Schäfer, D., Brix, S., Maróti, G. & Kovács, Á. T., 2020, (Accepted/In press) In : ISME Journal. 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species

Houbraken, J., Kocsubé, S., Visagie, C. M., Yilmaz, N., Wang, X-C., Meijer, M., Kraak, B., Hubka, V., Samson, R. A. & Frisvad, J. C., 2020, In : Studies in Mycology. 95, p. 5-169 165 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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Complete Genome Sequence of Pseudomonas sp. Strain SK, Isolated from Organic Wheat Rhizosphere

Khatri, S., Sazinas, P., Shivay, Y. S., Sharma, S. & Jelsbak, L., 2020, In : Microbiology Resource Announcements. 9, 26, 2 p., e00510-20.

Research output: Contribution to journalJournal articleResearchpeer-review

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Complete Genome Sequences of 13 Bacillus subtilis Soil Isolates for Studying Secondary Metabolite Diversity

Kiesewalter, H. T., Lozano-Andrade, C. N., Maróti, G., Snyder, D., Snyder, D., Jørgensen, T. S., Weber, T. & Kovács, Á. T., 2020, In : Microbiology Resource Announcements. 9, 2, 3 p., e01406-19.

Research output: Contribution to journalJournal articleResearchpeer-review

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Development of scale-down methods to investigate impact of different scale dependent factors in industrial HMO production

Gecse, G., Andersen, S., Becker, P., Kilstrup, M. & Johanson, T., 2020. 1 p.

Research output: Contribution to conferenceConference abstract for conferenceResearch

Differential equation-based minimal model describing metabolic oscillations in Bacillus subtilis biofilms

Garde, R., Ibrahim, B., Kovács, Á. T. & Schuster, S., 2020, In : Royal Society Open Science. 7, 2, 14 p., 190810.

Research output: Contribution to journalJournal articleResearchpeer-review

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Diphenylalanine Peptide Nanowires as a Substrate for Neural Cultures

Walls, A. B., Dimaki, M., Korsgaard, T., Swiniarska, M. M., Castillo-León, J., Waagepetersen, H. S. & Svendsen, W. E., 2020, In : BioNanoScience. 10, p. 224-234 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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Dissecting modular synthases through inhibition: A complementary chemical and genetic approach

Vickery, C. R., McCulloch, I. P., Sonnenschein, E., Beld, J., Noel, J. P. & Burkart, M. D., 2020, In : Bioorganic & Medicinal Chemistry Letters. 30, 2, 6 p., 126820.

Research output: Contribution to journalJournal articleResearchpeer-review

Fungal communities in rice cultivated in different Brazilian agroclimatic zones: From field to market

Katsurayama, A. M., Martins, L. M., Iamanaka, B. T., Fungaro, M. H. P., Silva, J. J., Pitt, J. I., Frisvad, J. C. & Taniwaki, M. H., 2020, In : Food Microbiology. 87, 8 p., 103378.

Research output: Contribution to journalJournal articleResearchpeer-review

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Growing a circular economy with fungal biotechnology: a white paper

Meyer, V., Basenko, E. Y., Benz, J. P., Braus, G. H., Caddick, M. X., Csukai, M., de Vries, R. P., Endy, D., Frisvad, J. C., Gunde-Cimerman, N., Haarmann, T., Hadar, Y., Hansen, K., Johnson, R. I., Keller, N. P., Kraševec, N., Mortensen, U. H., Perez, R., Ram, A. F. J., Record, E. & 7 others, Ross, P., Shapaval, V., Steiniger, C., van den Brink, H., van Munster, J., Yarden, O. & Wösten, H. A. B., 2020, In : Fungal Biology and Biotechnology. 7, 1, 23 p., 5.

Research output: Contribution to journalReviewResearchpeer-review

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Identification of SclB, a Zn(II)2Cys6 transcription factor involved in sclerotium formation in Aspergillus niger

Jørgensen, T. R., Burggraaf, A-M., Arentshorst, M., Schutze, T., Lamers, G., Niu, J., Kwon, M. J., Park, J., Frisvad, J. C., Nielsen, K. F., Meyer, V., van den Hondel, C. A. M. J. J., Dyer, P. S. & Ram, A. F. J., 2020, In : Fungal Genetics and Biology. 139, 14 p., 103377.

Research output: Contribution to journalJournal articleResearchpeer-review

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Internal insulation of solid masonry walls - Field experiment with Phenolic foam and lime-cork based insulating plaster

Jensen, N. F., Rode, C., Andersen, B., Bjarløv, S. P. & Møller, E. B., 2020, In : E3S Web of Conferences. 172, 8 p., 01003.

Research output: Contribution to journalConference articleResearchpeer-review

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Loss of AA13 LPMOs impairs degradation of resistant starch and reduces the growth of Aspergillus nidulans

Haddad Momeni, M., Leth, M. L., Sternberg, C., Schoof, E., Nielsen, M. W., Holck, J., Workman, C. T., Hoof, J. B. & Abou Hachem, M., 2020, In : Biotechnology for Biofuels. 13, 1, 13 p., 135.

Research output: Contribution to journalJournal articleResearchpeer-review

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Metal ions weaken the hydrophobicity and antibiotic resistance of Bacillus subtilis NCIB 3610 biofilms

Falcón García, C., Kretschmer, M., Lozano-Andrade, C. N., Schönleitner, M., Dragoŝ, A., Kovács, Á. T. & Lieleg, O., 2020, In : NPJ biofilms and microbiomes. 6, 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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Nanograss sensor for selective detection of Pseudomonas aeruginosa by pyocyanin identification in airway samples

Alatraktchi, F. A., Dimaki, M., Støvring, N., Johansen, H. K., Molin, S. & Svendsen, W. E., 2020, In : Analytical Biochemistry. 593, 6 p., 113586.

Research output: Contribution to journalJournal articleResearchpeer-review

New section and species in Talaromyces

Sun, B-D., Chen, A. J., Houbraken, J., Frisvad, J. C., Wu, W-P., Wei, H-L., Zhou, Y-G., Jiang, X-Z. & Samson, R. A., 2020, In : MycoKeys. 68, 68, p. 75-113 39 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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Oxygenated Geosmins and Plant-like Eudesmanes from a Bacterial Mangrove Endophyte

Ding, L. & Hertweck, C., 2020, In : Journal of Natural Products. 83, 7, p. 2207-2211 5 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Plant‐like Cadinane Sesquiterpenes from an Actinobacterial Mangrove Endophyte

Ding, L., Görls, H. & Hertweck, C., 2020, (Accepted/In press) In : Magnetic Resonance in Chemistry.

Research output: Contribution to journalJournal articleResearchpeer-review

Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms

Otto, S. B., Martin, M., Schäfer, D., Hartmann, R., Drescher, K., Brix, S., Dragoš, A. & Kovács, Á. T., 2020, In : mSystems. 5, 4, 12 p., e00425-20.

Research output: Contribution to journalJournal articleResearchpeer-review

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Recurrent tuberculosis in patients infected with the predominant Mycobacterium tuberculosis outbreak strain in Denmark. New insights gained through whole genome sequencing

Folkvardsen, D. B., Norman, A., Rasmussen, E. M., Lillebaek, T., Jelsbak, L. & Andersen, Å. B., 2020, In : Infection, Genetics and Evolution. 80, 6 p., 104169.

Research output: Contribution to journalJournal articleResearchpeer-review

Repression of the lysogenic PR promoter in bacteriophage TP901-1 through binding of a CI-MOR complex to a composite OM-OR operator

Pedersen, M., Neergaard, J. T., Cassias, J., Rasmussen, K. K., Lo Leggio, L., Sneppen, K., Hammer, K. & Kilstrup, M., 2020, In : Scientific Reports. 10, 1, 13 p., 8659.

Research output: Contribution to journalJournal articleResearchpeer-review

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Review of Oxepine-Pyrimidinone-Ketopiperazine Type Nonribosomal Peptides

Guo, Y., Frisvad, J. C. & Larsen, T. O., 2020, In : Metabolites. 10, 6, 13 p., 246.

Research output: Contribution to journalReviewResearchpeer-review

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Sequence Analysis of Plasmids in Vibrio anguillarum from Different Fish and Locations

Akter, T., Lindegaard, M., Pedersen, K., Strube, M. L., Ronco, T. & Dalsgaard, I., 2020, In : Journal of Aquatic Animal Health. 32, 1, p. 21-27

Research output: Contribution to journalJournal articleCommunication

Spread of LA-MRSA CC398 in Danish mink (Neovison vison) and mink farm workers

Hansen, J. E., Stegger, M., Pedersen, K., Sieber, R. N., Larsen, J., Larsen, G., Lilje, B., Chriél, M., Andersen, P. S. & Larsen, A. R., 2020, In : Veterinary Microbiology. 245, 5 p., 108705.

Research output: Contribution to journalJournal articleResearchpeer-review

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Surfactin production is not essential for pellicle and root-associated biofilmdevelopment of Bacillus subtilis

Thérien, M., Kiesewalter, H. T., Auria, E., Charron-Lamoreux, V., Wibowo, M., Maróti, G., Kovács, Á. T. & Beuregard, P. B., 2020, In : Biofilm. 2, 7 p., 100021.

Research output: Contribution to journalJournal articleResearchpeer-review

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Synthesis of carbon quantum dot-poly lactic-co-glycolic acid hybrid nanoparticles for chemo-photothermal therapy against bacterial biofilms

Huang, Z., Zhou, T., Yuan, Y., Natalie Kłodzińska, S., Zheng, T., Sternberg, C., Mørck Nielsen, H., Sun, Y. & Wan, F., 2020, In : Journal of Colloid and Interface Science. 577, p. 66-74 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Tenuazonic acid from Stemphylium loti inhibits the plant plasma membrane H+-ATPase by a mechanism involving the C-terminal regulatory domain

Bjørk, P. K., Rasmussen, S. A., Gjetting, S. K., Havshøi, N. W., Petersen, T. I., Ipsen, J. Ø., Larsen, T. O. & Fuglsang, A. T., 2020, In : New Phytologist. 226, 3, p. 770-784 15 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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The draft genome of mandrill (Mandrillus sphinx): An Old World monkey

Yin, Y., Yang, T., Liu, H., Huang, Z., Zhang, Y., Song, Y., Wang, W., Guang, X., Sahu, S. K. & Kristiansen, K., 2020, In : Scientific Reports. 10, 1, 8 p., 2431.

Research output: Contribution to journalJournal articleResearchpeer-review

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The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

Li, L., Wang, S., Wang, H., Sahu, S. K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G. K. S., Xu, X. & 4 others, Liu, X., Van de Peer, Y., Melkonian, M. & Liu, H., 2020, (Accepted/In press) In : Nature Ecology & Evolution. 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access

Ultrasmall TPGS-PLGA Hybrid Nanoparticles for Site-Specific Delivery of Antibiotics into Pseudomonas aeruginosa Biofilms in Lungs

Wan, F., Bohr, S. S-R., Kłodzińska, S. N., Jumaa, H., Huang, Z., Nylander, T., Thygesen, M. B., Sørensen, K. K., Jensen, K. J., Sternberg, C., Hatzakis, N. & Mørck Nielsen, H., 2020, In : ACS Applied Materials and Interfaces. 12, 1, p. 380-389 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Visualizing the invisible: class excursions to ignite children's enthusiasm for microbes

McGenity, T. J., Gessesse, A., Hallsworth, J. E., Garcia Cela, E., Verheecke-Vaessen, C., Wang, F., Chavarría, M., Haggblom, M. M., Molin, S., Danchin, A., Smid, E. J., Lood, C., Cockell, C. S., Whitby, C., Liu, S-J., Keller, N. P., Stein, L. Y., Bordenstein, S. R., Lal, R., Nunes, O. C. & 11 others, Gram, L., Singh, B. K., Webster, N. S., Morris, C., Sivinski, S., Bindschedler, S., Junier, P., Antunes, A., Baxter, B. K., Scavone, P. & Timmis, K., 2020, In : Microbial Biotechnology. 13, 4, p. 844-887 44 p.

Research output: Contribution to journalEditorialResearchpeer-review

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2019

#EUROmicroMOOC: using Twitter to share trends in Microbiology worldwide

López-Goñi, I., Giner-Lamia, J., Álvarez-Ordoñez, A., Benitez-Páez, A., Claessen, D., Cortesao, M., de Toro, M., García-Ruano, D., Granato, E. T., Kovács, ÁT., Romalde, J. L., Sana, T. G., Sánchez-Angulo, M., Sangari, F. J., Smits, W. K., Sturm, T., Thomassin, J. L., Valdehuesa, K. N. G. & Zapotoczna, M., 2019, In : FEMS Microbiology Letters. 366, 11, 4 p., fnz141.

Research output: Contribution to journalJournal articleResearchpeer-review

A-, B- and C-type prymnesins are clade specific compounds and chemotaxonomic markers in Prymnesium parvum

Binzer, S. B., Svenssen, D. K., Daugbjerg, N., Alves-de-Souza, C., Pinto, E., Hansen, P. J., Larsen, T. O. & Varga, E., 2019, In : Harmful Algae. 81, p. 10-17

Research output: Contribution to journalJournal articleResearchpeer-review

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A hydrodynamic flow focusing microfluidic device for the continuous production of hexosomes based on docosahexaenoic acid monoglyceride

Yaghmur, A., Ghazal, A., Ghazal, R., Dimaki, M. & Svendsen, W. E., 2019, In : Physical Chemistry Chemical Physics. 21, 24, p. 13005-13013 9 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Analysis of Pseudomonas putida growth on non-trivial carbon sources using transcriptomics and genome-scale modeling

D'Arrigo, I., Cardoso, J. G. R., Rennig, M., Sonnenschein, N., Herrgård, M. J. & Long, K. S., 2019, In : Environmental Microbiology Reports. 11, 2, p. 87-97 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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A rare thioquinolobactin siderophore present in a bioactive Pseudomonas sp. DTU12.1

Sazinas, P., Hansen, M. L., Aune, M. I., Fischer, M. H. & Jelsbak, L., 2019, In : Genome Biology and Evolution. 11, 12, p. 3529-3533 5 p., evz267.

Research output: Contribution to journalJournal articleResearchpeer-review

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Are There Circadian Clocks in Non-Photosynthetic Bacteria?

Sartor, F., Eelderink-Chen, Z., Aronson, B., Bosman, J., Hibbert, L. E., Dodd, A. N., Kovács, Á. T. & Merrow, M., 2019, In : Biology. 8, 2, 19 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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Aspergillus section Flavi diversity and the role of A. novoparasiticus in aflatoxin contamination in the sugarcane production chain

Iamanaka, B. T., de Souza Lopes, A., Martins, L. M., Frisvad, J. C., Medina, A., Magan, N., Sartori, D., Massi, F. P., Fungaro, M. H. P. & Taniwaki, M. H., 2019, In : International Journal of Food Microbiology. 293, p. 17-23

Research output: Contribution to journalJournal articleResearchpeer-review

Atrorosins: a new subgroup of Monascus pigments from Talaromyces atroroseus

Isbrandt, T., Tolborg, G., Ødum, A. S. R., Workman, M. & Larsen, T. O., 2019, In : Applied Microbiology and Biotechnology. p. 1-8 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Bacillus subtilis

Kovács, Á. T., 2019, In : Trends in Microbiology. 27, 8, p. 724-725 2 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Bacterial Candidates for Colonization and Degradation of Marine Plastic Debris

Roager, L. & Sonnenschein, E. C., 2019, In : Environmental Science and Technology. 53, 20, p. 11636-11643 8 p.

Research output: Contribution to journalJournal articleResearchpeer-review