Research group for Genomic Epidemiology

  • Kemitorvet, Bygning 202

    DK-2800 Kgs Lyngby

    Denmark

Research Output

2020

AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains

Guillier, L., Gourmelon, M., Lozach, S., Cadel-Six, S., Vignaud, M-L., Munck, N. S. M., Hald, T. & Palma, F., 2020, (Accepted/In press) In : Microbial Genomics. 10 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences

Matamoros, S., Hendriksen, R. S., Pataki, B. Á., Pakseresht, N., Rossello, M., Silvester, N., Amid, C., Aarestrup, F. M., Koopmans, M., Cochrane, G., Csabai, I., Lund, O., Schultsz, C. & Group, T. C. M-A., 2020, (Accepted/In press) In : Microbial Genomics. 6 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance

Ribeiro Duarte, A. S., Stärk, K. D. C., Munk, P., Leekitcharoenphon, P., Bossers, A., Luiken, R., Sarrazin, S., Lukjancenko, O., Pamp, S. J., Bortolaia, V., Nissen, J. N., Kirstahler, P., Van Gompel, L., Poulsen, C. S., Kaas, R. S., Hellmér, M., Hansen, R. B., Gomez, V. M. & Hald, T., 2020, In : Frontiers in Public Health. 8, 10 p., 38.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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58 Downloads (Pure)
Open Access
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41 Downloads (Pure)

Antimicrobial resistant E. coli and enterococci in pangasius fillets and prawns in Danish retail imported from Asia

Ellis-Iversen, J., Seyfarth, A. M., Korsgaard, H. B., Bortolaia, V., Munck, N. S. M. & Dalsgaard, A., 2020, In : Food Control. 114, 106958.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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58 Downloads (Pure)

Assessing the Effect of Fungicide Treatment on Cocoa Black Pod Disease in Ghana

Oduro, B., Apenteng, O. O. & Nkansah, H., 2020, In : Statistics, Optimization & Information Computing. 8, 2, p. 374–385

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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7 Downloads (Pure)

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

Marcelino, V. R., Clausen, P. T. L. C., Buchmann, J. P., Wille, M., Iredell, J. R., Meyer, W., Lund, O., Sorrell, T. C. & Holmes, E. C., 2020, In : Genome Biology (Online Edition). 21, 15 p., 103.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Clades of huge phages from across Earth's ecosystems

Al-Shayeb, B., Sachdeva, R., Chen, L-X., Ward, F., Munk, P., Devoto, A., Castelle, C. J., Olm, M. R., Bouma-Gregson, K., Amano, Y., He, C., Méheust, R., Brooks, B., Thomas, A., Lavy, A., Matheus-Carnevali, P., Sun, C., Goltsman, D. S. A., Borton, M. A., Sharrar, A. & 25 others, Jaffe, A. L., Nelson, T. C., Kantor, R., Keren, R., Lane, K. R., Farag, I. F., Lei, S., Finstad, K., Amundson, R., Anantharaman, K., Zhou, J., Probst, A. J., Power, M. E., Tringe, S. G., Li, W-J., Wrighton, K., Harrison, S., Morowitz, M., Relman, D. A., Doudna, J. A., Lehours, A-C., Warren, L., Cate, J. H. D., Santini, J. M. & Banfield, J. F., 2020, In : Nature. 578, p. 425-431

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Economic hardship over twenty-two consecutive years of adult life and markers of early ageing: physical capability, cognitive function and inflammation

Foverskov, E., Petersen, G. L., Pedersen, J. L. M., Rod, N. H., Mortensen, E. L., Bruunsgaard, H. & Lund, R., 2020, In : European Journal of Ageing. 17, p. 55–67

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access

Erratum: Application of shotgun metagenomics to smoked salmon experimentally spiked: Comparison between sequencing and microbiological data using different bioinformatic approaches (Italian Journal of Food Safety, (2019), 8, 4)

De Cesare, A., Oliveri, C., Lucchi, A., Pasquali, F., Pamp, S. J., Mordhorst, H., Wylezich, C., Poulsen, C. S. & Manfreda, G., 2020, In : Italian Journal of Food Safety. 9, 1, 8991.

Research output: Contribution to journalComment/debateResearchpeer-review

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Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods

Munck, N. S. M., Leekitcharoenphon, P., Litrup, E., Kaas, R. S., Meinen, A., Guillier, L., Tang, Y., Malorny, B., Palma, F., Borowiak, M., Gourmelon, M., Simon, S., Banerji, S., Petrovska, L., Dallman, T. J. & Hald, T., 2020, In : Scientific Data. 7, 1, 12 p., 75.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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39 Downloads (Pure)

Gastrointestinal toxicity during induction treatment for childhood acute lymphoblastic leukemia: The impact of the gut microbiota

De Pietri, S., Ingham, A. C., Frandsen, T. L., Rathe, M., Krych, L., Castro‐Mejía, J. L., Nielsen, D. S., Nersting, J., Wehner, P. S., Schmiegelow, K., Hasle, H., Pamp, S. J. & Müller, K., 2020, (Accepted/In press) In : International Journal of Cancer. 11 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform

Szarvas, J., Ahrenfeldt, J., Bellod Cisneros, J. L., Thomsen, M. C. F., Aarestrup, F. M. & Lund, O., 2020, In : Communications Biology. 3, 1, 10 p., 137.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering

Ahrenfeldt, J., Waisi, M., Loft, I. C., Clausen, P. T. L. C., Allesøe, R. L., Szarvas, J., Hendriksen, R. S., Aarestrup, F. M. & Lund, O., 2020, In : Scientific Reports. 10, 11 p., 3033.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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46 Downloads (Pure)

Molecular epidemiology of Salmonella Infantis in Europe: insights into the success of the bacterial host and its parasitic pESI-like megaplasmid

Alba, P., Leekitcharoenphon, P., Carfora, V., Amoruso, R., Cordaro, G., Di Matteo, P., Ianzano, A., Iurescia, M., Diaconu, E. L., Study Group, E-E-A. N., Karlsmose Pedersen, S., Guerra, B., Hendriksen, R. S., Franco, A. & Battisti, A., 2020, (Accepted/In press) In : Microbial Genomics. 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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10 Downloads (Pure)

Occupational Exposure and Carriage of Antimicrobial Resistance Genes (tetW, ermB) in Pig Slaughterhouse Workers

Van Gompel, L., Dohmen, W., Luiken, R. E. C., Bouwknegt, M., Heres, L., Van Heijnsbergen, E., Jongerius-Gortemaker, B. G. M., Scherpenisse, P., Greve, G. D., Tersteeg-Zijderveld, M. H. G., Wadepohl, K., Ribeiro Duarte, A. S., Muñoz-Gómez, V., Fischer, J., Skarżyńska, M., Wasyl, D., Wagenaar, J. A., Urlings, B. A. P., Dorado-García, A., Wouters, I. M. & 3 others, Heederik, D. J. J., Schmitt, H. & Smit, L. A. M., 2020, In : Annals of Work Exposures and Health. 64, 2, p. 125-137

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Predicting effects of changed antimicrobial usage on the abundance of antimicrobial resistance genes in finisher’ gut microbiomes

Dalhoff Andersen, V., Møller Aarestrup, F., Munk, P., Stengaard Jensen, M., de Knegt, L., Bortolaia, V., nudsen, B. E., Lukjancenko, O., Birkegård, A. C. & Vigre, H., 2020, In : Preventive Veterinary Medicine. 174, 10 p., 104853.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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135 Downloads (Pure)

Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks

Aytan, D., Clausen, P. T. L. C., Bortolaia, V., Aarestrup, F. M. & Lund, O., 2020, In : mSystems. 5, 1, 15 p., e00774-19.

Research output: Contribution to journalJournal articleResearchpeer-review

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57 Downloads (Pure)

Source Attribution of Salmonella in Macadamia Nuts to Animal and Environmental Reservoirs in Queensland, Australia

Munck, N. S. M., Smith, J., Bates, J., Glass, K., Hald, T. & Kirk, M. D., 2020, (Accepted/In press) In : Foodborne pathogens and disease.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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28 Downloads (Pure)

Symposium report: One Health meets sequencing

Egli, A., Koch, D., Danuser, J., Hendriksen, R. S., Driesen, S., Schmid, D. C., Neher, R., Mäusezahl, M., Seth-Smith, H. M., Bloemberg, G., Tschudin-Sutter, S., Endimiani, A., Perreten, V., Greub, G., Schrenzel, J. & Stephan, R., 2020, In : Microbes and Infection. 22, 1, p. 1-7

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children

Osakunor, D. N. M., Munk, P., Mduluza, T., Petersen, T. N., Brinch, C., Ivens, A., Chimponda, T., Amanfo, S. A., Murray, J., Woolhouse, M. E. J., Aarestrup, F. M. & Mutapi, F., 2020, In : Communications Biology. 3, 1, 11 p., 155.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Towards a European health research and innovation cloud (HRIC)

Aarestrup, F. M., Albeyatti, A., Armitage, W. J., Auffray, C., Augello, L., Balling, R., Benhabiles, N., Bertolini, G., Bjaalie, J. G., Black, M., Blomberg, N., Bogaert, P., Bubak, M., Claerhout, B., Clarke, L., De Meulder, B., D'Errico, G., Di Meglio, A., Forgo, N., Gans-Combe, C. & 32 others, Gray, A. E., Gut, I., Gyllenberg, A., Hemmrich-Stanisak, G., Hjorth, L., Ioannidis, Y., Jarmalaite, S., Kel, A., Kherif, F., Korbel, J. O., Larue, C., Laszlo, M., Maas, A., Magalhaes, L., Manneh-Vangramberen, I., Morley-Fletcher, E., Ohmann, C., Oksvold, P., Oxtoby, N. P., Perseil, I., Pezoulas, V., Riess, O., Riper, H., Roca, J., Rosenstiel, P., Sabatier, P., Sanz, F., Tayeb, M., Thomassen, G., Van Bussel, J., Van Den Bulcke, M. & Van Oyen, H., 2020, In : Genome Medicine. 12, 1, 14 p., 18.

Research output: Contribution to journalJournal articleResearchpeer-review

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Using sewage for surveillance of antimicrobial resistance

Aarestrup, F. M. & Woolhouse, M. E. J., 2020, In : Science. 367, 6478, p. 630-632

Research output: Contribution to journalJournal articleResearchpeer-review

2019

An outbreak of monophasic Salmonella Typhimurium associated with raw pork sausage and other pork products, Denmark 2018-19

Helmuth, I. G., Espenhain, L., Ethelberg, S., Jensen, T., Kjeldgaard, J. S., Litrup, E., Schjørring, S. & Muller, L., 2019, In : Epidemiology and Infection. 147, 7 p., e315.

Research output: Contribution to journalJournal articleResearchpeer-review

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Antibiotic-Induced, Increased Conjugative Transfer Is Common to Diverse Naturally Occurring ESBL Plasmids in Escherichia coli

Liu, G., Bogaj, K., Bortolaia, V., Olsen, J. E. & Thomsen, L. E., 2019, In : Frontiers in Microbiology. 10, 12 p., 2119.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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104 Downloads (Pure)

Antimicrobial resistance in hospital wastewater in Scotland: a cross-sectional metagenomics study

Perry, M., van Bunnik, B., McNally, L., Wee, B., Munk, P., Warr, A., Moore, B., Kalima, P., Philip, C., de Roda Husman, A. M., Aarestrup, F. M. & Woolhouse, M., 2019, In : Lancet. 394, p. S1

Research output: Contribution to journalConference abstract in journalResearchpeer-review

Application of different DNA extraction procedures, library preparation protocols and sequencing platforms: impact on sequencing results

Pasquali, F., Do Valle, I., Palma, F., Remondini, D., Manfreda, G., Castellani, G., Hendriksen, R. S. & De Cesare, A., 2019, In : Heliyon. 5, 10, 9 p., e02745.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Association between teat skin colonization and intramammary infection with Staphylococcus aureus and Streptococcus agalactiae in herds with automatic milking systems

Svennesen, L., Nielsen, S. S., Mahmmod, Y. S., Krömker, V., Pedersen, K. & Klaas, I. C., 2019, In : Journal Of Dairy Science. 102, 1, p. 629-639

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries

Luiken, R. E. C., Van Gompel, L., Munk, P., Sarrazin, S., Joosten, P., Dorado-García, A., Borup Hansen, R., Knudsen, B. E., Bossers, A., Wagenaar, J. A., Aarestrup, F. M., Dewulf, J., Mevius, D. J., Heederik, D. J. J., Smit, L. A. M., Schmitt, H. & consortium, EFFORT., 2019, In : Journal of Antimicrobial Chemotherapy. 74, 9, p. 2596–2604

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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131 Downloads (Pure)

Attributable sources of community-acquired carriage of Escherichia coli containing β-lactam antibiotic resistance genes: a population-based modelling study

ESBL Attribution Consortium, 2019, In : The Lancet Planetary Health. 3, 8, p. e357-e369

Research output: Contribution to journalJournal articleResearchpeer-review

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Ceftriaxone use in a tertiary care hospital in Kilimanjaro, Tanzania: A need for a hospital antibiotic stewardship programme

Sonda, T. B., Horumpende, P. G., Kumburu, H. H., van Zwetselaar, M., Mshana, S. E., Alifrangis, M., Lund, O., Møller Aarestrup, F., Chilongola, J. O., Mmbaga, B. T. & Kibiki, G. S., 2019, In : PLOS ONE. 14, 8, 11 p., e0220261.

Research output: Contribution to journalJournal articleResearchpeer-review

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Comparison of Gene Expression Profiles of Uropathogenic Escherichia Coli CFT073 after Prolonged Exposure to Subinhibitory Concentrations of Different Biocides

Ligowska-Marzęta, M. A., Hancock, V., Ingmer, H. & Aarestrup, F. M., 2019, In : Antibiotics. 8, 4, 19 p., 167.

Research output: Contribution to journalJournal articleResearchpeer-review

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Contaminating viral sequences in high-throughput sequencing viromics: a linkage study of 700 sequencing libraries

Asplund, M., Kjartansdóttir, K. R., Mollerup, S., Vinner, L., Fridholm, H., Herrera, J. A. R., Friis-Nielsen, J., Hansen, T. A., Jensen, R. H., Nielsen, I. B., Richter, S. R., Rey-Iglesia, A., Matey-Hernandez, M. L., Alquezar-Planas, D. E., Olsen, P. V. S., Sicheritz-Pontén, T., Willerslev, E., Lund, O., Brunak, S., Mourier, T. & 3 others, Nielsen, L. P., Izarzugaza, J. M. G. & Hansen, A. J., 2019, In : Clinical Microbiology and Infection. 25, 10, p. 1277-1285

Research output: Contribution to journalJournal articleResearchpeer-review

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Corrigendum: Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011-2016

Zajac, M., Sztromwasser, P., Bortolaia, V., Leekitcharoenphon, P., Cavaco, L., Zietek-Barszcz, A., Hendriksen, R. S. & Wasyl, D., 2019, In : Frontiers in Microbiology. 10, 2816.

Research output: Contribution to journalJournal articleResearchpeer-review

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Corrigendum: Surveillance and Genomics of Toxigenic Vibrio cholerae O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania (Frontiers in Microbiology, (2019), 10, (901), 10.3389/fmicb.2019.00901)

Hounmanou, Y. M. G., Leekitcharoenphon, P., Hendriksen, R. S., Dougnon, T. V., Mdegela, R. H., Olsen, J. E. & Dalsgaard, A., 2019, In : Frontiers in Microbiology. 10, 2 p., 2974.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution

Leekitcharoenphon, P., Sørensen, G., Lofstrom, C., Battisti, A., Szabo, I., Wasyl, D., Slowey, R., Zhao, S., Brisabois, A., Kornschober, C., Karssin, A., Szilard, J., Cerny, T., Svendsen, C. A., Pedersen, K., Aarestrup, F. M. & Hendriksen, R. S., 2019, In : Frontiers in Microbiology. 10, 12 p., 179.

Research output: Contribution to journalJournal articleResearchpeer-review

Open Access
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DANMAP 2018: Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark

Borck Høg, B. (ed.), Ellis-Iversen, J. (ed.), Wolf Sönksen, U. (ed.), Bortolaia, V., Hendriksen, R. S., Borck Høg, B., Ellis-Iversen, J., Korsgaard, H. B., Petersen, C. K., Boel, J., Dalby, T., Hammerum, A. M., Hansen, F., Hasman, H., Henius, A. E., Hoffmann, S., Ilan, M. B., Kaya, H., Kjerulf, A., Kristensen, B. & 11 others, Rhod Larsen, A., Møller, E., Schytte Olsen, S., Skjold Selle Pedersen, K., Petersen, A., Porsbo, L. J., Roer, L., Skovgaard, S., Slotved, H-C., Wolf Sönksen, U. & Torpdahl, M., 2019, Kgs. Lyngby: Technical University of Denmark. 172 p.

Research output: Book/ReportReportCommissioned

Open Access
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Data science in healthcare: Benefits, challenges and opportunities

Abedjan, Z., Boujemaa, N., Campbell, S., Casla, P., Chatterjea, S., Consoli, S., Costa-Soria, C., Czech, P., Despenic, M., Garattini, C., Hamelinck, D., Heinrich, A., Kraaij, W., Kustra, J., Lojo, A., Sanchez, M. M., Mayer, M. A., Melideo, M., Menasalvas, E., Møller Aarestrup, F. & 15 others, Artigot, E. N., Petković, M., Recupero, D. R., Gonzalez, A. R., Kerremans, G. R., Roller, R., Romao, M., Ruping, S., Sasaki, F., Spek, W., Stojanovic, N., Thoms, J., Vasiljevs, A., Verachtert, W. & Wuyts, R., 2019, Data Science for Healthcare: Methodologies and Applications. Springer, p. 3-38

Research output: Chapter in Book/Report/Conference proceedingBook chapterResearchpeer-review

Development of a simplified on-farm animal health and welfare benchmarking tool for pig herds

Wadepohl, K., Blaha, T., Van Gompel, L., Duarte, A. S. R., Nielsen, C. L., Saatkamp, H., Wagenaar, J. A., Meemken, D., Graveland, H., Schmitt, H., Heederik, D., Luiken, R. E. C., Mevius, D., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Saunders, P., Chauvin, C., David, J., Battisti, A. & 10 others, Caprioli, A., Dewulf, J., Brandt, M., Aarestrup, F. M., Hald, T., Wasyl, D., Skarzynska, M., Zajac, M., Daskalov, H. & Staerk, K., 2019, In : Berliner und Munchener Tierarztliche Wochenschrift. 132, 11-12, p. 504-512

Research output: Contribution to journalJournal articleResearchpeer-review

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Disease-free monoculture farming by fungus-growing termites

Otani, S., Challinor, V. L., Kreuzenbeck, N. B., Kildgaard, S., Krath Christensen, S., Larsen, L. L. M., Aanen, D. K., Rasmussen, S. A., Beemelmanns, C. & Poulsen, M., 2019, In : Scientific Reports. 9, 1, 10 p., 8819.

Research output: Contribution to journalJournal articleResearchpeer-review

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DTU Fødevareinstituttet i front for at forebygge sygdomme

Kornholt, H., Svingen, T., Aarestrup, F. M. & Poulsen, M., 2019, In : Miljø og sundhed. 25, 2, p. 13-17

Research output: Contribution to journalJournal articleResearchpeer-review

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Economic hardship over twenty-two consecutive years of adult life and markers of early ageing

Foverskov, E., Petersen, G. L., Pedersen, J. L. M., Rod, N. . H., Mortensen, E. L., Bruunsgaard, H. & Lund, R., 2019, In : European Journal of Public Health. 29, Supplement 4, p. 38-38 ckz185.085.

Research output: Contribution to journalConference abstract in journalResearchpeer-review

Open Access
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47 Downloads (Pure)

Environmental surveillance and genomic characterization of Vibrio cholerae O1 from fish, phytoplankton and water in Lake Victoria

Hounmanou, Y. M. G., Leekitcharoenphon, P., Hendriksen, R. S., Dougnon, T. V., Mdegela, R. H., Olsen, J. & Dalsgaard, A., 2019, 13th DWF Water Research Conference - Abstracts. Frederiksberg C: University of Copenhagen, p. 52-52

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsResearchpeer-review

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Evaluation of temocillin for phenotypic carbapenemase screening of Escherichia coli and Salmonella enterica isolates in relation to the presence of genes encoding ESBLs and carbapenemase production

Cavaco, L. M., Hansen, F., Mushtaq, S., Hill, R. L. R., Woodford, N., Le Hello, S., Hendriksen, R. S., Hammerum, A. M. & Hasman, H., 2019, In : Journal of Antimicrobial Chemotherapy. 74, 3, p. 639-644

Research output: Contribution to journalJournal articleResearchpeer-review

Exit tunnel modulation as resistance mechanism of S. aureus erythromycin resistant mutant

Halfon, Y., Matzov, D., Eyal, Z., Bashan, A., Zimmerman, E., Kjeldgaard, J. S., Ingmer, H. & Yonath, A., 2019, In : Scientific Reports. 9, 1, 8 p., 11460.

Research output: Contribution to journalJournal articleResearchpeer-review

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Fate of CMY-2-encoding plasmids introduced into the human fecal microbiota by exogenous Escherichia coli

Anjum, M., Madsen, J. S., Nesme, J., Jana, B., Wiese, M., Jasinskytė, D., Nielsen, D. S., Sørensen, S. J., Dalsgaard, A., Moodley, A., Bortolaia, V. & Guardabassi, L., 2019, In : Antimicrobial Agents and Chemotherapy. 63, 5, 13 p., e02528.

Research output: Contribution to journalJournal articleResearchpeer-review

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Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017

Hounmanou, Y. M. G., Leekitcharoenphon, P., Kudirkiene, E., Mdegela, R. H., Hendriksen, R. S., Olsen, J. E. & Dalsgaard, A., 2019, In : PLOS Neglected Tropical Diseases . 13, 12, 14 p., e0007934.

Research output: Contribution to journalJournal articleResearchpeer-review

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49 Downloads (Pure)

Global disease burden of pathogens in animal source foods, 2010

Li, M., Havelaar, A. H., Hoffmann, S., Hald, T., Kirk, M. D., Torgerson, P. R. & Devleesschauwer, B., 2019, In : PLOS ONE. 14, 6, 18 p., e0216545.

Research output: Contribution to journalJournal articleResearchpeer-review

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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Hendriksen, R. S., Munk, P., Njage, P. M. K., van Bunnik, B., McNally, L., Lukjancenko, O., Röder, T., Nieuwenhuijse, D., Karlsmose Pedersen, S., Kjeldgaard, J. S., Kaas, R. S., Clausen, P. T. L. C., Vogt, J. K., Leekitcharoenphon, P., van de Schans, M. G. M., Zuidema, T., de Roda Husman, A. M., Rasmussen, S., Petersen, B., Global, S. S. P. C. & 14 others, Amid, C., Cochrane, G., Sicheritz-Pontén, T., Schmitt, H., Alvarez, J. R. M., Aidara-Kane, A., Pamp, S. J., Lund, O., Hald, T., Woolhouse, M., Koopmans, M. P., Vigre, H., Petersen, T. N. & Aarestrup, F. M., 2019, In : Nature Communications. 10, 12 p., 1124.

Research output: Contribution to journalJournal articleResearchpeer-review

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Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198

Hawkey, J., Le Hello, S., Doublet, B., Granier, S. A., Hendriksen, R. S., Fricke, W. F., Ceyssens, P-J., Gomart, C., Billman-Jacobe, H., Holt, K. E. & Weill, F-X., 2019, In : Microbial Genomics. 5, 7, 12 p.

Research output: Contribution to journalJournal articleResearchpeer-review

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