Research group for Genomic Epidemiology

  • Kemitorvet, Bygning 202

    DK-2800 Kgs Lyngby

    Denmark

Activities

Foodborne pathogens & whole genome sequencing: impact on public health protection

Pimlapas Leekitcharoenphon (Organizer)

26 Mar 201928 Mar 2019

Activity: Attending an eventParticipating in or organising a conference

WGS session: Quality of WGS data – standardization, ILPT

Pimlapas Leekitcharoenphon (Invited speaker)

19 Sep 2019

Activity: Talks and presentationsConference presentations

Global surveillance of antimicrobial resistance through global sewage

Pimlapas Leekitcharoenphon (Speaker)

28 Mar 2019

Activity: Talks and presentationsConference presentations

Foodborne pathogens & whole genome sequencing: impact on public health protection

Ana Sofia Ribeiro Duarte (Participant)

2019

Activity: Attending an eventParticipating in or organising a conference

11th International Conference on Predictive Modelling in Food

Ana Sofia Ribeiro Duarte (Organizer)

17 Sep 2019

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

Metagenomics in surveillance - potential and challenges

Ana Sofia Ribeiro Duarte (Guest lecturer)

31 Aug 2019

Activity: Talks and presentationsGuest lectures, external teaching and course activities at other universities

Frontiers in Microbiology (Journal)

Pimlapas Leekitcharoenphon (Reviewer)

5 Dec 2019

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

Frontiers in Microbiology (Journal)

Pimlapas Leekitcharoenphon (Reviewer)

23 Feb 2019

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

B M C Genomics (Journal)

Pimlapas Leekitcharoenphon (Reviewer)

17 Jun 2019

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

One Health Outlook (Journal)

Pimlapas Leekitcharoenphon (Reviewer)

15 Oct 2019

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

Comparative genomics of Campylobacter jejuni of poultry origin from major poultry producing European countries

Pimlapas Leekitcharoenphon (Other)

9 Sep 201912 Sep 2019

Activity: Talks and presentationsConference presentations

Whole Genome Sequencing analysis

Pimlapas Leekitcharoenphon (Guest lecturer)

20 Mar 2019

Activity: Talks and presentationsGuest lectures, external teaching and course activities at other universities

GMI12 NGS workshop

Pimlapas Leekitcharoenphon (Organizer)

10 Jun 201911 Jun 2019

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

11th International Conference on Predictive Modelling in Food (Event)

Ana Sofia Ribeiro Duarte (Member)

2019

Activity: MembershipMembership in review committee

Metagenomics - The next frontier in AMR surveillance?

Ana Sofia Ribeiro Duarte (Guest lecturer)

6 Nov 2019

Activity: Talks and presentationsGuest lectures, external teaching and course activities at other universities

Introduction to surveillance using metagenomics

Ana Sofia Ribeiro Duarte (Guest lecturer)

13 Aug 2019

Activity: Talks and presentationsGuest lectures, external teaching and course activities at other universities

One Health EJP meeting

Ana Sofia Ribeiro Duarte (Participant)

13 Nov 2019

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

Transboundary and Emerging Diseases (Journal)

Ana Sofia Ribeiro Duarte (Reviewer)

Jun 2019

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

Whole-genome Sequence Based Species Identification Using K-mer Alignment

Pimlapas Leekitcharoenphon (Speaker)

13 Jun 2019

Activity: Talks and presentationsConference presentations

11th International Conference on Predictive Modelling in Food (Event)

Ana Sofia Ribeiro Duarte (Chairman)

2019

Activity: MembershipMembership in review committee

Frontiers in Public Health (Journal)

Pimlapas Leekitcharoenphon (Reviewer)

23 Apr 2019

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

International Conference Antimicrobial Resistance in the Food Chain

Ana Sofia Ribeiro Duarte (Participant)

26 Nov 201828 Nov 2018

Activity: Attending an eventParticipating in or organising a conference

International workshop on Metagenomics Applied to Surveillance of Pathogens and Antimicrobial Resistance

Ana Sofia Ribeiro Duarte (Organizer)

19 Mar 201820 Mar 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

Source attribution in Denmark and machine learning as a new tool for source attribution: case of Salmonella Typhimurium isolates from Denmark

Nanna Sophia Mucha Munck (Invited speaker)

5 Feb 2018

Activity: Talks and presentationsConference presentations

Young COMPARE 2018

Nanna Sophia Mucha Munck (Organizer), & Casper Sahl Poulsen (Organizer)

27 Feb 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

Machine learning is a potentially innovative method for source attribution using next generation sequencing data: Danish Salmonella source account 2017

Nanna Sophia Mucha Munck (Invited speaker)

12 Oct 2018

Activity: Talks and presentationsGuest lectures, external teaching and course activities at other universities

Prognostic Potential of Human β-defensin 2 and Ruminococcaceae for Disease Outcomes in Hematopoietic Stem Cell Transplantation Patients

Anna Cäcilia Masche (Other)
6 Mar 2018

Activity: Talks and presentationsConference presentations

ECCMID 2019 (Event)

Valeria Bortolaia (Reviewer)
2018 → …

Activity: Editorial work and peer reviewPeer review of manuscriptsResearch

Are you the next gen antibiotic resistance fighters?”

Valeria Bortolaia (Invited speaker)
13 Oct 2018

Activity: Talks and presentationsTalks and presentations in private or public companies and organisations

ESVAC Annual Network Meeting 2018

Valeria Bortolaia (Participant)
3 Apr 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

Danish Veterinary and Food Administration

Valeria Bortolaia (Visiting lecturer)
29 Nov 2018

Activity: Visiting an external institutionVisiting another research institution

Superbugs: Avoiding an Existential Threat to Humanity

Valeria Bortolaia (Panel member)
4 Dec 2018

Activity: Talks and presentationsTalks and presentations in private or public companies and organisations

Carbapenemase epidemiology in bacteria of animal and environmental origin: the One Health prospective

Valeria Bortolaia (Invited speaker)
8 Jun 2018

Activity: Talks and presentationsConference presentations

Quantifying Exposure to AMR: transmission routes and risk for public health

Ana Sofia Ribeiro Duarte (Speaker)

28 Nov 2018

Activity: Talks and presentationsConference presentations

Massive Open Online Course on Metagenomics Applied to Surveillance of Pathogens and Antimicrobial Resistance

Ana Sofia Ribeiro Duarte (Other)

26 Nov 201828 Nov 2018

Activity: Talks and presentationsConference presentations

Genome dynamics of vancomycin-resistant Enterococcus faecium in clinical samples

Ana Sofia Ribeiro Duarte (Supervisor)

2018

Activity: Examinations and supervisionSupervisor activities

European Food Safety Authority (External organisation)

Ana Sofia Ribeiro Duarte (Member)

20182019

Activity: MembershipMembership of research networks or expert groups

Machine learning is a potentially innovative method for source attribution using next generation sequencing data: case of Salmonella Typhimurium.

Nanna Sophia Mucha Munck (Speaker)

24 Sep 2018

Activity: Talks and presentationsConference presentations

Machine learning is a potentially innovative method for source attribution using next generation sequencing data: case of Salmonella Typhimurium

Nanna Sophia Mucha Munck (Speaker)

15 Nov 2018

Activity: Talks and presentationsConference presentations

Measuring the ability of Enterococcus faecium carrying silent vanA to revert to a vancomycin-resistant phenotype on exposure to vancomycin

Valeria Bortolaia (Main supervisor)
2018 → …

Activity: Examinations and supervisionSupervisor activities

ASK (AMR in Seafood as common ground for Knowledge exchange and risk assessment) kick-off meeting

Valeria Bortolaia (Participant)
31 Jan 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

AMR One Health Network meeting

Valeria Bortolaia (Participant)
5 Feb 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

2nd Meeting of WHO AMR Surveillance and Quality Assessment Collaborating Centres Network

Valeria Bortolaia (Participant)
12 Mar 201814 Mar 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

Methods for AMR surveillance in seafood

Valeria Bortolaia (Speaker), Timo Röder (Speaker)
24 Oct 201825 Oct 2018

Activity: Talks and presentationsConference presentations

AMR One Health Network meeting

Valeria Bortolaia (Participant)
26 Oct 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

EFSA Network meeting on AMR monitoring

Valeria Bortolaia (Participant)
7 Nov 20188 Nov 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.

CIRCLES Kick-off meeting

Valeria Bortolaia (Participant)
4 Dec 20185 Dec 2018

Activity: Attending an eventParticipating in or organising workshops, courses, seminars etc.