Research output per year
Research output per year
Organisation profile
Organisation profile
The Research Group for Genomic Epidemiology conducts targeted research with the aim of predicting and preventing infectious diseases in humans and animals, as well as supporting global detection and control with a special emphasis on antimicrobial resistance.
The primary task is to conduct targeted research with the aim of predicting and preventing infectious diseases in humans and supporting global detection and control – with a special emphasis on antimicrobial resistance and food borne infections.
The research on infectious diseases is concentrated around determining and predicting:
- where (sampling)
- what (analytic methods, genomics)
- when and how (modelling)
- why (microbial ecology, modelling)
UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. Our work contributes towards the following SDG(s):
Fingerprint
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
Profiles
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Frank Møller Aarestrup
- National Food Institute - Professor, Head of Research Group
- Research Group for Genomic Epidemiology
- DTU Microbes Initiative
Person: VIP
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Changes in gut microbiota predict neutropenia after induction treatment in childhood acute lymphoblastic leukemia
Sørum, M. E., Boulund, U., De Pietri, S., Weischendorff, S., Enevold, C., Rathe, M., Als-Nielsen, B., Hasle, H., Pamp, S., Stokholm, J. & Müller, K., 2025, In: Blood Advances. 9, 7, p. 1508-1521 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile2 Downloads (Orbit) -
Draft genomic sequences of Vibrio cholerae strains linked to the cholera outbreak in Kamituga, South Kivu, DRC
Leekitcharoenphon, P., Ndishimye, P., Otani, S., Møller, F. D., Schuele, L., Munnink, B. B. O., Udahemuka, J. C., Siangoli, F. B., Mbiribindi, J. B., Koopmans, M., Aarestrup, F. M. & Masirika, L. M., 2025, In: Microbiology Resource Announcements. 14, 4, 4 p., e0104424.Research output: Contribution to journal › Letter › peer-review
Open AccessFile -
Epidemiological and genomic evolution of the ongoing outbreak of clade Ib mpox virus in the eastern Democratic Republic of the Congo
Masirika, L. M., Udahemuka, J. C., Schuele, L., Nieuwenhuijse, D. F., Ndishimye, P., Boter, M., Mbiribindi, J. B., Kacita, C., Lang, T., Gortázar, C., Musabyimana, J. P., Otani, S., Aarestrup, F. M., Siangoli, F. B., Oude Munnink, B. B. & Koopmans, M., 2025, (Accepted/In press) In: Nature Medicine.Research output: Contribution to journal › Letter › peer-review
Open AccessFile8 Downloads (Orbit)
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Epidemiology, drivers and environmental surveillance of gastro-intestinal infections and antimi-crobial resistance in refugee and rural populations
Ndoyi, R. (PhD Student), Njage, P. M. K. (Main Supervisor) & Aarestrup, F. M. (Supervisor)
01/12/2024 → 30/11/2027
Project: PhD
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Campylobacter in the Environment and Food Chain: A Dual Study on Waterborne Risks and Virulence Factors of Isolates
Consoli, A. (PhD Student), Lassen, B. (Main Supervisor), Takeuchi-Storm, N. (Supervisor), Leekitcharoenphon, P. S. (Supervisor) & Joensen, K. G. (Supervisor)
01/11/2024 → 31/10/2027
Project: PhD
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CampVir: CampVir: Comparative analysis of Campylobacter jejuni isolates isolated from chicken houses, slaughterhouses, the retail trade and people in the action plan over a number of years regarding examine genes for survival and virulence
Lassen, B. (PI), Sandberg, M. (Project Participant), Fernández, C. C. (Project Participant), Leekitcharoenphon, P. S. (Project Participant) & Joensen, K. G. (Project Participant)
01/07/2024 → 31/12/2026
Project: Research
Activities
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Member of the assessment committee assessing applicants for The Norwegian Scientific Committee for Food and Environment (Event)
Vigre, H. (Member)
5 Apr 2022Activity: Membership › Membership in review committee
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VetInspector – a tool for post mortem inspection of chicken
Sandberg, M. (Guest lecturer)
30 Sept 2021Activity: Talks and presentations › Conference presentations
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Development of a WGS-based source attribution model for Campylobacter
Brinch, M. L. (Other)
2021Activity: Other
File
Datasets
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PanRes - Collection of antimicrobial resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 27 Nov 2023
DOI: 10.5281/zenodo.10091602, https://zenodo.org10091602
Dataset
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MetalResistance - Collection of metal resistance genes
Martiny, H.-M. (Creator), Pyrounakis, N. (Creator), Lukjančenko, O. (Creator), Petersen, T. N. (Creator), Aarestrup, F. M. (Creator), Clausen, P. T. L. C. (Creator) & Munk, P. (Creator), Zenodo, 31 Aug 2023
DOI: 10.5281/zenodo.8108201, https://zenodo.org/record/8108201
Dataset
Prizes
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Best Oral Presentation
Ribeiro Duarte, A. S. (Recipient), 2010
Prize: Prizes, scholarships, distinctions
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DTU Young Researchers Award 2020
Clausen, P. T. L. C. (Recipient), 27 Nov 2020
Prize: Prizes, scholarships, distinctions
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F1000 - Exceptional: Development of Spatial Distribution Patterns by Biofilm Cells (AEM Vol. 81(18)).
Pamp, S. J. (Recipient), 8 Sept 2015
Prize: Prizes, scholarships, distinctions
File
Press/Media
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Dansk gris kan rumme et af svarene på global sundhedskrise
20/09/2024
1 Media contribution
Press/Media: Press / Media
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Scientists develop new method to analyze sewage data for epidemic monitoring
18/09/2024
1 item of Media coverage
Press/Media: Press / Media
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Forskere finder kolera og tusindvis af ukendte bakterier i Københavns kloakker
17/09/2024
1 item of Media coverage
Press/Media: Press / Media