Reconstruction

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QSProteome: a community-driven interactive platform for large-scale exploration and evaluation of predicted protein complex structures
Catoiu, E. A., Kambo, D., Rodriguez, B., Vear, K., Wang, Z., Akpata, J., Shah, J., Ayoub, R., Hofmann, M., Ananda, K., Tantry, A., Gupta, I., Anwyl, R., Faucher, C., Nichols, J., Ton, B., Marchal, L. O. & Palsson, B. O., 2026, (Accepted/In press) In: Nucleic Acids Research.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
Structure of the Enterobacter pan-genome is revealed using machine learning
Burrows, J. T., Li, G., Monk, J. M., Chauhan, S. M. & Palsson, B. O., 2026, (Accepted/In press) In: Microbiology Spectrum. e0192225.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
Decomposition of the pangenome matrix reveals a structure in gene distribution in the Escherichia coli species
Chauhan, S. M., Ardalani, O., Hyun, J. C., Monk, J. M., Phaneuf, P. V. & Palsson, B. O., 2025, In: mSphere. 10, 1, e0053224.
Research output: Contribution to journal › Journal article › Research › peer-review

Open Access
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AI Oracles for Fitness Landscape Optimization on Molecular Binders
Romero Yianni, D. C. (PhD Student), Quaglia, C. B. (Main Supervisor), Papaleo, E. (Supervisor), Ferkinghoff-Borg, J. (Supervisor) & Marcatili, P. (Supervisor)
15/05/2025 → 14/05/2028
Project: PhD
Towards sustainable food and agriculture production: integrative computational and metabolic techniques from fungal microbes
Kim, M. (PhD Student), Blin, K. (Main Supervisor), Phaneuf, P. V. (Supervisor) & Kerkhoven, E. J. (Supervisor)
01/04/2024 → 31/03/2027
Project: PhD
PanKB: Advancing Biotechnology with Pangenomics
Sun, B. (PhD Student), Santos Delgado, A. (Main Supervisor), Phaneuf, P. V. (Supervisor), Winther, O. (Supervisor) & Palsson, B. O. (Supervisor)
01/02/2024 → 31/01/2027
Project: PhD

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