Projects per year
Search results
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Active
Deep Immune Receptor Modelling
Machado, L. (PhD Student), Jenkins, T. P. (Main Supervisor), Hadrup, S. R. (Supervisor) & Nielsen, M. (Supervisor)
01/06/2025 → 31/05/2028
Project: PhD
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Explainable AI and Bioinformatics for Health
Papagoras, K. A. (PhD Student), Lund, O. (Main Supervisor), Quaglia, C. B. (Supervisor) & Ebrahimi, P. (Supervisor)
01/01/2025 → 31/12/2027
Project: PhD
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Causal language models and graph analysis for disease landscapes
Gade, F. S. (PhD Student), Lund, O. (Main Supervisor), Kitchen, R. (Supervisor) & Mendoza, M. L. Z. (Supervisor)
15/05/2024 → 14/05/2027
Project: PhD
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Design and characterization of novel T-cell-receptor-like minibinders
Scapolo, B. (PhD Student), Hadrup, S. R. (Main Supervisor), Jenkins, T. P. (Supervisor), Johansen, K. H. (Supervisor) & Nielsen, M. (Supervisor)
01/03/2024 → 28/02/2027
Project: PhD
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Predicting patient trajectories in oncological surgery
Quarles van Ufford, P. (PhD Student), Lund, O. (Main Supervisor), Olsen, L. R. (Supervisor), Gogenur, I. (Supervisor) & Rose, M. H. (Supervisor)
15/08/2023 → 14/08/2026
Project: PhD
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Development of protein structure based methods for T cell specificity prediction
Deleuran, S. N. (PhD Student), Nielsen, M. (Main Supervisor) & Lund, O. (Supervisor)
01/06/2023 → 31/05/2026
Project: PhD
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Personalized screening of neoantigen-specific CD8 T cells in single-cell resolution
Nos, G. (PhD Student), Hadrup, S. R. (Main Supervisor), Munk, K. K. (Supervisor), Natarajan, K. (Supervisor) & Nielsen, M. (Supervisor)
01/01/2023 → 31/12/2025
Project: PhD
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Development of machine learning methods to identify protein patterns driving autoimmunity
Saksager, A. B. (PhD Student), Quaglia, C. B. (Main Supervisor) & Nielsen, M. (Supervisor)
15/11/2022 → 14/11/2025
Project: PhD
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Immune receptor Immunoinformatics
Clifford, J. N. (PhD Student), Nielsen, M. (Main Supervisor) & Lund, O. (Supervisor)
01/10/2022 → 30/09/2025
Project: PhD
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T Cell Immunoinformatics
Nilsson, J. B. (PhD Student), Nielsen, M. (Main Supervisor) & Quaglia, C. B. (Supervisor)
01/09/2022 → 31/08/2025
Project: PhD
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Training Innate Respiratory Immunity to protect against pandemic viral infection
Zimmermann, J. (PhD Student), Pedersen, G. K. (Supervisor) & Nielsen, M. (Main Supervisor)
01/11/2021 → 06/10/2025
Project: PhD
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Finished
Cancer T cell immunoinformatics
Wan, Y.-T. R. (PhD Student), Nielsen, M. (Main Supervisor), Quaglia, C. B. (Supervisor) & Rasmussen, S. (Examiner)
01/05/2022 → 02/06/2025
Project: PhD
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Accurate classification of allergenic responses using machine learning algorithms
Li, Y. (PhD Student), Quaglia, C. B. (Main Supervisor), Nielsen, M. (Supervisor), Kesmir, C. (Examiner) & Stranzl, T. (Examiner)
01/12/2021 → 22/04/2025
Project: PhD
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B cells and antibodies in anti-tumour immunity in colorectal cancer
Barnkob, N. M. (PhD Student), Dietrich, N. (Supervisor), Lund, O. (Main Supervisor), Ellmark, P. (Examiner) & Lerdrup, M. (Examiner)
01/10/2021 → 01/04/2025
Project: PhD
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AI in antibody design
Høie, M. H. (PhD Student), Nielsen, M. (Main Supervisor), Marcatili, P. (Supervisor), Winther, O. (Supervisor), Boomsma, W. K. (Examiner) & Carranza, N. L. (Examiner)
01/09/2021 → 05/11/2024
Project: PhD
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Developing strain?level resolution metagenomic methods to profile the microbiome
Zachariasen, T. (PhD Student), Lund, O. (Main Supervisor), Brejnrod, A. (Supervisor) & Arumugam, M. (Examiner)
01/09/2020 → 15/01/2024
Project: PhD
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Improved Immunoinformatic Methods for Rationale T Cell Epitope Discovery
Montemurro, A. (PhD Student), Nielsen, M. (Main Supervisor) & Jessen, L. E. (Supervisor)
01/10/2019 → 16/01/2023
Project: PhD
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Web applications with machine learning for risk identification in pediatric cancer patients
Vang, J. (PhD Student), Papaleo, E. (Main Supervisor), Nielsen, M. (Supervisor), Mikkelsen, T. S. (Supervisor) & Schmiegelow, K. (Supervisor)
15/07/2019 → 28/11/2022
Project: PhD
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Development of Immunoinformatics prediction methods for improved rational identification of T cell epitopes
Povlsen, H. R. (PhD Student), Nielsen, M. (Main Supervisor) & Jessen, L. E. (Supervisor)
01/04/2019 → 14/12/2022
Project: PhD
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Interrogation of T cell recognition in cancer immune therapy
Kristensen, N. P. (PhD Student), Reading, J. (Examiner), Hadrup, S. R. (Main Supervisor), Nielsen, M. (Supervisor), Svane, I. M. (Supervisor) & Buggert, M. (Examiner)
01/03/2019 → 16/01/2023
Project: PhD
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Deep Learning methods for Immunotherapy
Schaap-Johansen, A.-L. (PhD Student), Greiff, V. (Examiner), Blicher, T. H. (Examiner), Jessen, L. E. (Main Supervisor), Fang, X. (Supervisor) & Rasmussen, S. (Supervisor)
01/12/2018 → 16/01/2023
Project: PhD
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T Cell Immunoinformatics
Reynisson, B. (PhD Student), Purcell, A. W. (Examiner), Nielsen, H. (Examiner), Kringelum, J. V. (Examiner), Nielsen, M. (Main Supervisor) & Marcatili, P. (Supervisor)
01/04/2018 → 17/06/2021
Project: PhD
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Statistical Modelling of TCR Repertoires for Immunotherapy and Drug Delievery Systems
Vujovic, M. (PhD Student), Boer, R. J. D. (Examiner), Vestergaard, G. A. (Examiner), Andersen, M. H. (Examiner), Andresen, T. L. (Main Supervisor) & Marcatili, P. (Supervisor)
15/10/2017 → 15/04/2021
Project: PhD
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Towards accurate prediction of T cell targests: Learning the rules of T cell receptor interaction
Holm, J. S. (PhD Student), Buonaguro, L. (Examiner), Donia, M. (Examiner), Heegaard, P. M. H. (Examiner), Hadrup, S. R. (Main Supervisor) & Nielsen, M. (Supervisor)
01/10/2017 → 15/04/2021
Project: PhD
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Typing and pheno typing based on direct sequencing of samples
Clausen, P. T. L. C. (PhD Student), Phillippy, A. (Examiner), Kaas, R. S. (Examiner), Krogh, A. (Examiner), Lund, O. (Main Supervisor) & Aarestrup, F. M. (Supervisor)
01/07/2017 → 15/09/2020
Project: PhD
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Metagenomic Data Stratified using Artificial Intelligence
Nissen, J. N. (PhD Student), Igel, C. (Examiner), Sczyrba, A. (Examiner), Vestergaard, G. A. (Examiner), Pedersen, A. G. (Main Supervisor), Nielsen, M. (Supervisor) & Rasmussen, S. (Supervisor)
Technical University of Denmark
01/11/2016 → 30/09/2020
Project: PhD