1. 2018
  2. Published

    Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries. / Munk, Patrick; Knudsen, Berith Elkær; Lukjacenko, Oksana; Duarte, Ana Sofia Ribeiro; Van Gompel, Liese; Luiken, Roosmarijn E.C.; Smit, Lidwien A.M.; Schmitt, Heike; Garcia, Alejandro Dorado; Hansen, Rasmus Borup; Petersen, Thomas Nordahl; Bossers, Alex; Ruppé, Etienne; Graveland, Haitske; van Essen, Alieda; Gonzalez-Zorn, Bruno; Moyano, Gabriel; Sanders, Pascal; Chauvin, Claire; David, Julie; Battisti, Antonio; Caprioli, Andrea; Dewulf, Jeroen; Blaha, Thomas; Wadepohl, Katharina; Brandt, Maximiliane; Wasyl, Dariusz; Skarzyńska, Magdalena; Zajac, Magdalena; Daskalov, Hristo; Saatkamp, Helmut W.; Stärk, Katharina D.C.; Lund, Ole; Hald, Tine; Pamp, Sünje Johanna; Vigre, Håkan; Heederik, Dick; Wagenaar, Jaap A.; Mevius, Dik; Møller Aarestrup, Frank ; EFFORT Group.

    In: Nature Microbiology, Vol. 3, No. 8, 01.08.2018, p. 898-908.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  3. Published

    Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots. / Nag, Sidsel; Kofoed, Poul Erik; Ursing, Johan; Lemvigh, Camilla Koldbæk; Allesøe, Rosa Lundbye; Rodrigues, Amabelia; Svendsen, Christina Aaby; Jensen, Jacob Dyring; Alifrangis, Michael; Lund, Ole; Møller Aarestrup, Frank .

    In: Malaria Journal, Vol. 17, No. 1, 91, 23.02.2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  4. Published

    Prevalence and risk factors for CTX-M gram-negative bacteria in hospitalized patients at a tertiary care hospital in Kilimanjaro, Tanzania. / Sonda, Tolbert; Kumburu, Happiness; van Zwetselaar, Marco; Alifrangis, Michael; Mmbaga, Blandina T.; Lund, Ole; Møller Aarestrup, Frank ; Kibiki, Gibson.

    In: European Journal of Clinical Microbiology and Infectious Diseases, Vol. 37, No. 5, 20.02.2018, p. 897-906.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  5. Published

    Accurate genotyping across variant classes and lengths using variant graphs. / Sibbesen, Jonas Andreas; Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Liu, Siyang; Villesen, Palle ; Skov, Laurits; Belling, Kirstine; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Dam-Als, Thomas; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua; Cao, Hongzhi ; Ye, Chen ; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben ; Friborg, Rune M. ; Halager, Anders Egerup; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, María Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick ; Ali , Syed; Westergaard, David; Yadav, Rachita; Li, Ning ; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide; Krogh, Anders.

    In: Nature Genetics, 2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  6. Published

    AnOxPe-pred: Using deep learning for the prediction of antioxidative properties of peptides. / Olsen, Tobias Hegelund; Pertseva, Margarita; García Moreno, Pedro Jesús; Jacobsen, Charlotte; Lund, Ole; Hansen, Egon Bech; Marcatili, Paolo.

    Sustain Conference 2018: Creating Technology for a Sustainable Society. ed. / Carlos Melero; Kristian Mølhave. Lyngby, Denmark : Technical University of Denmark (DTU), 2018. F-2.

    Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedings – Annual report year: 2018Researchpeer-review

  7. Published

    Antibody Cross-Reactivity in Antivenom Research. / Ledsgaard, Line; Jenkins, Timothy P; Davidsen, Kristian; Krause, Kamille Elvstrøm; Martos-Esteban, Andrea; Engmark, Mikael; Andersen, Mikael Rørdam; Lund, Ole; Laustsen, Andreas Hougaard.

    In: Toxins, Vol. 10, No. 10, 393, 2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  8. Published

    Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. / Matey-Hernandez, María Luisa; Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Andreas Sibbesen, Jonas; Liu, Siyang; Villesen, Palle ; Skov, Laurits; Belling, Kirstine ; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Grosjean, Marie; Bork-Jensen, Jette ; Grove, Jakob; Als, Thomas D.; Huang, Shujia ; Chang, Yuqi ; Xu, Ruiqi; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen ; Sun, Jihua; Cao, Hongzhi ; Ye, Chen ; Beusekom, Johan v.; Espeseth, Thomas; Flindt, Esben N.; Friborg, Rune M. ; Halager, Anders Egerup; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, María Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick F.; Ali , Syed; Westergaard, David; Yadav, Rachita; Li, Ning ; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf; Gupta, Ramneek; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide; Brunak, Søren; Izarzugaza, Jose M. G.

    In: B M C Bioinformatics, Vol. 19, 239, 2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  9. Published

    CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli based on the fumC and fimH Alleles. / Roer, Louise; Johannesen, Thor Bech; Hansen, Frank; Stegger, Marc; Tchesnokova, Veronika; Sokurenko, Evgeni; Garibay, Natasha; Allesøe, Rosa Lundbye; Thomsen, Martin C. F.; Lund, Ole; Hasman, Henrik; Hammerum, Anette M.

    In: Journal of Clinical Microbiology, Vol. 56, No. 4, e00063, 2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  10. Published

    Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing. / Kumburu, Happiness H.; Sonda, Tolbert; Leekitcharoenphon, Pimlapas; van Zwetselaar, Marco; Lukjancenko, Oksana; Alifrangis, Michael; Lund, Ole; Mmbaga, Blandina T.; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Journal of Biomedicine and Biotechnology, Vol. 2018, 2087693, 2018.

    Research output: Contribution to journalJournal article – Annual report year: 2018Researchpeer-review

  11. Published

    Identification and Characterization of Variant Intolerant Sites across Human Protein 3-Dimensional Structures. / Iqbal, Sumaiya; Jespersen, Jakob Berg; Perez-Palma, Eduardo; May, Patrick; Heyne, Henrike; Lage, Kasper; Steensbjerre Møller, Rikke; Wagner, Florence F.; Daly, Mark; Campbell, Arthur J.; Lal, Dennis.

    In: BIOPHYSICAL JOURNAL, Vol. 114, No. 3 s1, 3291-Pos, 2018, p. 664a.

    Research output: Contribution to journalConference abstract in journal – Annual report year: 2018Researchpeer-review

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