DTU Microbes Initiative

Projects

Projects per year 2016 2018 2019 2020 2021 2022 2023 2024 2030

• 1 Not started
• 311 Active
• 399 Finished

Projects per year

Search results

• Finished

  Detection of eukaryotic species using ancient and sedimentary DNA

  Vogel, N. A. (PhD Student), Renaud, G. (Main Supervisor), Pedersen, M. W. (Supervisor), Lorenzen, E. (Examiner) & Marschall, T. (Examiner)

  01/10/2021 → 11/02/2025

  Project: PhD

• Development and experimental assessment of a modelling approach for nutrient-ight interactions description and optimisation

  Stegemüller, L. S. (PhD Student), Angelidaki, I. (Main Supervisor), Thygesen, A. (Supervisor), Fotidis, I. (Examiner) & Norkser, N. H. (Examiner)

  01/10/2021 → 11/02/2025

  Project: PhD

  • Astaxanthin 100%
  • Haematococcus 100%
  • Microalga 100%
  • Mixotroph 100%
  • Deep Learning Method 100%

• Making cell factories first-class citizens in Digital Twins of bioprocesses: integration of systems biology models andcomputational fluid dynamics to support bioprocess scale-up

  Laborda, V. P. I. (PhD Student), Nielsen, L. K. (Main Supervisor), Krühne, U. (Supervisor), Sudarsan, S. (Supervisor), Rey, G. N. (Examiner) & Takors, R. (Examiner)

  01/10/2021 → 31/12/2024

  Project: PhD

• Predictive tool to improve formulation and processing of dairy products (Bacillus-Predict)

  Maktabdar, M. (PhD Student), Dalgaard, P. (Main Supervisor), Hansen, L. T. (Supervisor), Carlin, F. (Examiner) & Ellouze, M. (Examiner)

  01/10/2021 → 31/01/2025

  Project: PhD

• Phenotype predictions using machine learning and ultra-high resolution microbiomics

  Pita, S. R. (PhD Student), Jers, C. (Main Supervisor), Eklund, A. C. (Supervisor), Pedersen, H. K. (Supervisor), Rasmussen, S. (Examiner), Silva, S. D. A. V. D. (Examiner) & Nielsen, H. B. (Supervisor)

  01/10/2021 → 31/12/2024

  Project: PhD

• Mussel Mitigation Feeds and Supply System Technological Development

  Taylor, D. (PI) & Petersen, J. K. (PI)

  01/10/2021 → 30/09/2024

  Project: Research

  • Feed System 100%
  • Technological Progress 100%
  • Mussels 100%
  • Supply System 100%
  • Nutrition Assessment 100%

• Integrate Phase Change Materials with 3D Printing Sustainable Construction

  Rahemipoor, S. (PhD Student), Mehrali, M. (Main Supervisor), Almdal, K. (Supervisor), Ranjbar, N. (Supervisor), Mehrali, M. (Supervisor), Jacobsen, S. (Examiner) & Kjøniksen, A.-L. (Examiner)

  01/10/2021 → 31/12/2024

  Project: PhD

• B cells and antibodies in anti-tumour immunity in colorectal cancer

  Barnkob, N. M. (PhD Student), Dietrich, N. (Supervisor), Lund, O. (Main Supervisor), Ellmark, P. (Examiner) & Lerdrup, M. (Examiner)

  01/10/2021 → 01/04/2025

  Project: PhD

• Real-time surveillance and detection of infectious diseases in clinical and environmental pathogens

  Hallgren, M. B. (PhD Student), Aarestrup, F. M. (Main Supervisor), Clausen, P. T. L. C. (Supervisor), Dallman, T. (Examiner) & Hammerum, A. (Examiner)

  15/09/2021 → 11/02/2025

  Project: PhD

  • Oxford Nanopore Sequencing 100%
  • Oxford Nanopore Technologies 100%
  • Sequence Reads 100%
  • Cladistics 100%
  • Phylogeny 80%

• Data-Driven Natural Products Discovery in Soil Microbial Interaction

  Nuhamunada, M. (PhD Student), Weber, T. (Main Supervisor), Mohite, O. S. (Supervisor), Arumugam, M. (Supervisor), Pupin, M. (Examiner) & Udwary, D. (Examiner)

  01/09/2021 → 14/01/2025

  Project: PhD

  • Bioactive Compound 100%
  • Genome Sequencing 100%
  • Hybrid Assembly 33%
  • SQL Database 20%

• Formation of Carbon-Carbon Bonds from Alcohols by Radical Reactions

  Schichler, J. K. (PhD Student), Madsen, R. (Main Supervisor), Clausen, M. H. (Supervisor), Poulsen, T. (Examiner) & Wärnmark, K. (Examiner)

  01/09/2021 → 02/12/2024

  Project: PhD

  • Benzene Bioisosteres 100%
  • Methylboronic Acid 100%
  • Meerwein-Ponndorf-Verley Reduction 100%
  • Benzocaine 100%
  • Leteprinim 100%

• in vivo engineering of CAR T-cells through nanoparticle directed gene-delivery

  Friis, R. U. W. (PhD Student), Hadrup, S. R. (Main Supervisor), Ormhøj, M. (Supervisor), Sun, Y. (Supervisor), Themeli, M. (Examiner) & Møller, B. K. (Examiner)

  01/09/2021 → 11/02/2025

  Project: PhD

  • Chimeric Antigen Receptor T-Cell 100%
  • T Cell 75%
  • Solid Malignant Neoplasm 50%
  • Nanoparticle 50%
  • Chimeric Antigen Receptor T-Cell Immunotherapy 50%

• Data-Driven Analysis of C1 Metabolism in Acetogens

  Carrasco Muriel, J. (PhD Student), Nielsen, L. K. (Main Supervisor), Mansourvar, M. (Supervisor), Kim, H. U. (Examiner) & Michael Spormann, A. (Examiner)

  01/09/2021 → 11/03/2025

  Project: PhD

  • Clostridium 100%
  • Metabolic Pathway 100%
  • Transcriptomics 100%
  • Regulatory Network 33%
  • Hydrogenase 33%

• Inhibiting cholesterol transport with small molecules

  Bro, F. S. (PhD Student), Laraia, L. (Main Supervisor), Clausen, M. H. (Supervisor), Nelson, A. S. (Examiner) & Poulsen, T. (Examiner)

  01/09/2021 → 02/12/2024

  Project: PhD

  • Transport Proteins 100%
  • Sterol Transport 100%
  • Chemo-enzymatic 100%
  • Sterols 25%
  • Selective Modulators 25%

• Intelligent Maintenance of IoT Infrastructures

  Njor, E. J. (PhD Student), Fafoutis, X. (Main Supervisor), Madsen, J. (Supervisor), Roveri, M. (Examiner) & Tözün, P. (Examiner)

  01/09/2021 → 31/12/2024

  Project: PhD

• Asymmetric transition-metal catalysis for organic synthesis

  Chen, X. (PhD Student), Kramer, S. (Main Supervisor), Duus, J. Ø. (Supervisor), Manzanares, M. T. (Examiner) & Pedersen, C. M. (Examiner)

  01/09/2021 → 14/01/2025

  Project: PhD

  • amination 100%
  • Step Economy 37%
  • Metallonitrene 37%
  • Reactive Radical Species 37%
  • Metallocarbenes 37%

• Expression and functionalization of insect 7TM receptors in saccharomyces cerevisiae and pichia pastoris as a screening platform for odorants and insect behavior

  Hoch-Schneider, E. E. (PhD Student), Jensen, E. D. (Supervisor), Borodina, I. (Main Supervisor), Mattanovich, D. (Examiner) & Siewers, V. (Examiner)

  01/09/2021 → 14/01/2025

  Project: PhD

  • Genetic Engineering 100%
  • Debaryomyces Hansenii 100%
  • Saccharomyces cerevisiae 66%
  • Fermentation 50%
  • Table Salt 50%

• Microbial signalling in the rhizosphere

  Dinesen, C. (PhD Student), Kovács, Á. T. (Main Supervisor), Larsen, T. O. (Supervisor), Shank, E. A. (Examiner) & Tørring, T. (Examiner)

  01/09/2021 → 31/08/2024

  Project: PhD

• Digitalisation of Process Operations

  Stevnsborg, M. (PhD Student), Huusom, J. K. (Main Supervisor), Gernaey, K. V. (Supervisor), Thysen, M. (Examiner) & Young, B. (Examiner)

  01/09/2021 → 31/01/2025

  Project: PhD

• On-chip microsupercapacitors for electrochemical energy storage

  Kanakkottu, S. V. (PhD Student), Keller, S. S. (Main Supervisor), Jansen, H. (Supervisor), Rezaei, B. (Supervisor), Lethien, C. (Examiner) & Wang, X. (Examiner)

  01/09/2021 → 11/02/2025

  Project: PhD

  • Additive Manufacturing 100%
  • Flux Density 100%
  • Three Dimensional Printing 100%
  • Capacitance 100%
  • Energy Density 100%

• Oligosaccharide dehydrogenases as new and versatile LMPO partner in biomass breakdown

  Turella, S. (PhD Student), Hachem, M. A. (Main Supervisor), Morth, J. P. (Supervisor), Berkel, W. V. (Examiner) & Collinge, D. B. (Examiner)

  01/09/2021 → 14/01/2025

  Project: PhD

  • Flavoenzyme 100%
  • P. Sojae 36%
  • Soybean Root 18%
  • Phytophthora sojae 11%
  • Phytophthora Sojae 9%

• Fragment-based drug discovery targeting TNF receptors

  Chédotal, H. (PhD Student), Clausen, M. H. (Main Supervisor), Gotfredsen, C. H. (Supervisor), Cuenda, A. (Examiner) & Poulsen, T. (Examiner)

  01/09/2021 → 22/04/2025

  Project: PhD

• Precision Fermentation of High-quality Protein

  Balasubramanian, S. (PhD Student), Jensen, P. R. (Main Supervisor), Mijakovic, I. (Supervisor), Blank, L. M. (Examiner) & Jensen, K. (Examiner)

  01/09/2021 → 22/04/2025

  Project: PhD

  • Post-Translational Modification 100%
  • Legumin 100%
  • Phosphomimetic mutation 66%
  • Napin 66%
  • Bovine Milk Proteins 66%

• Algorithms for bioinformatics

  Rubin, J. D. (PhD Student), Renaud, G. (Main Supervisor), Gopalakrishnan, S. (Supervisor), Pereira, V. A. E. S. (Examiner) & Sahlin, K. (Examiner)

  01/09/2021 → 22/04/2025

  Project: PhD

• Miniaturized solar cell array for retinal prosthesis

  Kusumanchi, P. (PhD Student), Keller, S. S. (Main Supervisor), Davidsen, R. S. (Supervisor), Tenje, M. (Examiner) & Vittorio, M. D. (Examiner)

  01/09/2021 → 14/01/2025

  Project: PhD

  • Solar Cell 100%
  • Ganglion Cell 42%
  • Photoreceptor Cell 28%
  • Carbon Interface 25%
  • Electrical Conductivity 25%

• Refactoring native metabolism in Pseudomonas putida towards production and incorporation of novel fluorinated building blocks

  O’Connell, G. W. (PhD Student), Nikel, P. I. (Main Supervisor), Nørholm, M. (Supervisor), Dvorak, P. (Examiner) & Martínez-García, E. (Examiner)

  01/09/2021 → 31/08/2024

  Project: PhD

• Developing Synthetic Yeast-based Cell-Cell Communication Tools for Immune Cell Activation and Manipulation

  Deichmann, M. (PhD Student), Jensen, M. K. (Main Supervisor), Hadrup, S. R. (Supervisor), Jensen, E. D. (Supervisor), Ellis, T. (Examiner) & Galloway, K. E. (Examiner)

  01/08/2021 → 02/12/2024

  Project: PhD

  • Neurotransmitter Signaling 100%
  • Antigen Receptor Signaling 100%
  • Artificial Perception 100%
  • Yeast Mating 100%

• Conjugation of Graphene-Coated Nanoparticles & Antibiotics: Nano-Weapon Against Biofilms

  Madhusudanan, M. (PhD Student), Mijakovic, I. (Main Supervisor), Singh, P. (Supervisor), Lo Re, G. (Examiner) & Mishra, Y. K. (Examiner)

  01/08/2021 → 02/12/2024

  Project: PhD

• Modelling enzyme allocation and diurnal regulation in Cyanobacteria

  Firoozabadi, H. (PhD Student), Nielsen, L. K. (Main Supervisor), Groves, T. (Supervisor), Kerkhoven, E. J. (Examiner) & Herrgård, M. J. (Examiner)

  01/08/2021 → 11/03/2025

  Project: PhD

  • Cyanobacteria 100%
  • Macromolecule 50%
  • Cell Metabolism 50%
  • Synechocystis 50%
  • Synechococcus elongatus 25%

• Engineering bacterial cells for rducing instustial emissions of CO2

  Zhang, C. (PhD Student), Mijakovic, I. (Main Supervisor), Jers, C. (Supervisor), Chen, Y. (Examiner) & Lee, J. (Examiner)

  01/07/2021 → 05/11/2024

  Project: PhD

  • Fits and Tolerances 100%
  • Engineering 100%
  • Carbon Dioxide 100%
  • Carbon Capture 66%
  • Alkaline Tolerance 66%

• Reconstruction of a pangenome metabolic model for lactobacillus spp.

  Ardalani, O. (PhD Student), Nielsen, L. K. (Main Supervisor), Palsson, B. (Supervisor), Almaas, E. (Examiner) & Nikoloski, Z. (Examiner)

  01/07/2021 → 11/02/2025

  Project: PhD

• UNSGM Viral Dry Lab External Quality Assurance Exercises (EQAE) for the detection and characterization of viral pathogens as biological weapons with Next-Generation DNA Sequencing to further strengthen the bio-analytical reference laboratories in the UNSGM

  Kjeldgaard, J. S. (PI), Hendriksen, R. S. (PI) & Odgaard, C. (Other)

  15/06/2021 → 14/07/2024

  Project: Research

• Engineering bioflouorination in Escherichia coli for the biosynthesis of new-to-Nature organofluorine building-blocks

  De Maria, A. (PhD Student), Nikel, P. I. (Main Supervisor), Volke, D. C. (Supervisor), Chaiyen, P. (Examiner) & Marlière, P. (Examiner)

  15/06/2021 → 30/10/2023

  Project: PhD

  • Fluorine 100%
  • Fluorination 100%
  • Halide 100%
  • Microbial Biochemistry 100%
  • Metabolic 50%

• Combinatorial genetic engineering of mammalian cells for improved production of challenging therapeutic proteins

  Çagdas, E. (PhD Student), Nielsen, L. K. (Main Supervisor), Grav, L. M. (Supervisor), Lewis, N. E. (Supervisor), Barron, N. (Examiner) & Vernet, E. (Examiner)

  15/06/2021 → 03/07/2024

  Project: PhD

• Sociomicrobiology of Secondary Metabolite production

  Stannius, R. O. (PhD Student), Kovács, Á. T. (Main Supervisor), Jelsbak, L. (Supervisor), Jelsbak, L. (Examiner) & Stanley-Wall, N. (Examiner)

  01/06/2021 → 31/05/2024

  Project: PhD

• Molecular mechanism of plasmid persistence in Aeromonas spp

  Xu, J. (PhD Student), Dechesne, A. (Main Supervisor), Jelsbak, L. (Supervisor), Smets, B. F. (Supervisor), Berendonk, T. U. (Examiner) & Sørensen, S. J. (Examiner)

  01/06/2021 → 14/01/2025

  Project: PhD

  • Plasmid 100%
  • Aeromonas 100%
  • Antimicrobial Resistance 15%
  • Population Size 5%
  • Cladistics 5%

• Trophic efficiency of the pelagic food chain

  Papapostolou, A. (PhD Student), Andersen, K. H. (Main Supervisor), Visser, A. (Supervisor), Serra Pompei, M. C. (Supervisor), Banas, N. (Examiner) & Maar, M. (Examiner)

  01/06/2021 → 22/04/2025

  Project: PhD

• Fluid dynamics, evolution, and ecology of flagellate foraging

  Miano, F. (PhD Student), Kiørboe, T. (Main Supervisor), Andersen, A. P. (Supervisor), Asadzadeh, S. S. (Supervisor), Ryderheim, F. A. (Supervisor), Humphries, S. (Examiner) & Massana, R. (Examiner)

  15/05/2021 → 05/11/2024

  Project: PhD

  • Dynamics 100%
  • Liquid 100%
  • Flagellate 100%
  • Locomotion 100%
  • Fluid Dynamics 100%

• Changing oceanographic conditions of East Greenland and its link to regional fisheries

  Gjelstrup, C. V. B. (PhD Student), Stedmon, C. (Main Supervisor), Boje, J. (Supervisor), Visser, A. (Supervisor), Inall, M. (Examiner) & Larsen, K. M. (Examiner)

  01/05/2021 → 02/12/2024

  Project: PhD

  • Greenland 100%
  • Overturning Circulation 23%
  • Atlantic Overturning 23%
  • Ecosystem Function 17%
  • Polar Front 14%

• Modulation and control of secondary metabolite production by microbial interactions in Pseudomonas fluorescens

  Kaltenyte, A. (PhD Student), Jelsbak, L. (Main Supervisor), Ding, L. (Supervisor), Ongena, M. (Examiner) & Burmølle, M. (Examiner)

  01/05/2021 → 11/03/2025

  Project: PhD

  • Pseudomonas 100%
  • Pseudomonas fluorescens 100%
  • Secondary Metabolite 100%
  • Organismal Interaction 100%
  • Coculture 50%

• Recombinant production of animal protein and optimised variants

  Sainz de la Maza Larrea, A. (PhD Student), Sommer, M. O. A. (Main Supervisor), Jahn, L. J. (Supervisor), Blank, L. (Examiner) & Tuomisto, H. L. (Examiner)

  01/05/2021 → 14/01/2025

  Project: PhD

  • Dairy Systems 100%
  • Sustainable Dairy 50%
  • Milk Composition 33%
  • Casein 33%
  • Nutritional Content 33%

• Continuous enzyme cascade processes for pharmaceutical synthesis

  Madsen, J. Ø. (PhD Student), Woodley, J. (Main Supervisor), Dam-Johansen, K. (Supervisor), Paradisi, F. (Examiner) & Wohlgemuth, R. (Examiner)

  01/05/2021 → 14/08/2024

  Project: PhD

  • Chemistry 100%
  • Enzyme Activity 100%
  • Packed Bed Reactor 100%
  • Raman Spectroscopy 100%
  • Quantum Chemistry 100%

• Marine fish diversity patterns, drivers and underlying processes: present status and predictions under climate change

  Solé, M. M. (PhD Student), Lindegren, M. O. (Main Supervisor), Weigel, B. (Supervisor), Belgrano, A. (Examiner) & Chust, G. (Examiner)

  15/04/2021 → 15/07/2024

  Project: PhD

  • Marine Protected Area 100%
  • Climate Change 100%
  • Marine Fish Diversity 100%
  • Atlantic Ocean 25%
  • Community Composition 25%

• Fluorescence Water Quality Sensor for Control of Land-Based Aquaculture Systems

  Hambly, A. C. (Project Applicant), Stedmon, C. (Project Participant), Andersen, H. R. (Project Participant) & Wünsch, U. (Project Participant)

  12/04/2021 → 31/10/2024

  Project: Research

• Endophytic pseudomonas as a novel source of Biological Control Agents: Mechanistic approach to study and improve strain proformance against cereal fungal diseases

  Chantzis, E. (PhD Student), Jelsbak, L. (Main Supervisor), Frandsen, R. J. N. (Supervisor) & Madriz-Ordenana, K. (Supervisor)

  01/04/2021 → 31/03/2024

  Project: PhD

• REMESS: Resource effective multi-extraction of sustainable high-value compounds from shrimp production side-stream

  Sales Queiroz, L. (Project Participant), Casanova, F. (Project Participant), Gringer, N. (PI), Jacobsen, H. V. S. (Project Participant), Jacobsen, C. (Project Participant), Jessen, F. (Project Participant), Petersen, H. O. (Project Participant), Sloth, J. J. (Project Participant), Lund, Y. O. (Project Participant) & Stampe-Villadsen, H. L. (Project Participant)

  01/04/2021 → 31/07/2024

  Project: Research

  • Shrimp 100%
  • Value-added Compounds 100%
  • Shrimp Production 100%
  • Production Side 100%
  • Health Food 100%

• Cell-free stability studies for bioconversion

  Høst, A. V. (PhD Student), Woodley, J. (Main Supervisor), Pinelo, M. (Supervisor), Huang, Y. (Supervisor), Luo, J. (Supervisor), Rosenthal, K. (Examiner) & Sieber, V. (Examiner)

  01/04/2021 → 14/08/2024

  Project: PhD

  • Hydrogen Bond 100%
  • Oxidoreductase 100%
  • Reaction Limitation 25%
  • Remaining Time 25%
  • Head Plate 14%

• Metabolic Engineering of Yeasts for the Production of Natural Food Colorants

  Thomsen, P. T. (PhD Student), Borodina, I. (Main Supervisor), Babaei, M. (Supervisor), Kampranis, S. C. (Examiner) & Ledesma-Amaro, R. (Examiner)

  01/04/2021 → 14/01/2025

  Project: PhD

  • Betanin 100%
  • Red pigment 100%
  • Natural pigments 100%
  • Steviol Glycoside 100%
  • Fatty Acid Glycosides 71%

• Development of advanced microbial therapeutics for treating metabolic and hormone-related diseases

  Gelli Praveenkumar, H. (PhD Student), Sommer, M. O. A. (Main Supervisor), Vazquez Uribe, R. (Supervisor), Nielsen, H. M. (Supervisor), Sommer, M. O. A. (Main Supervisor), Vazquez Uribe, R. (Supervisor), Buckley, S. T. (Examiner), Crook, N. (Examiner) & Nielsen, H. M. (Supervisor)

  01/04/2021 → 14/01/2025

  Project: PhD

  • Fibroblast Growth Factor 21 100%
  • Albumin Fusion 83%
  • Fibroblast Growth Factor 21 (FGF21) 83%

• Rational secretory pathway engineering for improved CHO cell productivity

  Scapin, G. (PhD Student), Nielsen, L. K. (Main Supervisor), Grav, L. M. (Supervisor), Baer, A. (Examiner) & Meleady, P. (Examiner)

  15/03/2021 → 05/11/2024

  Project: PhD

  • Chinese Hamster 100%
  • Cytokine Production 100%
  • Ovary Cell 100%
  • Cell Line 100%
  • Omics Strategies 100%