DTU Microbes Initiative

Projects

Projects per year 2016 2018 2019 2020 2021 2022 2023 2024 2030

• 1 Not started
• 311 Active
• 399 Finished

Projects per year

Search results

• Active

  Rewiring Regulatory Networks in Escherichia coli to Improve Production of Human Milk Oligosaccharides (HMOs)

  Labunskaité, R. (PhD Student), Kilstrup, M. (Main Supervisor), Johanson, T. (Supervisor), Pedersen, M. (Supervisor), Johanson, T. (Supervisor) & Pedersen, M. (Supervisor)

  15/11/2021 → 21/05/2025

  Project: PhD

• Deciphering cellular and transcriptional diversity in human intestinal immune compartments and their alteractions in Crohn's disease

  Junghus, F. (PhD Student), Agace, W. W. (Main Supervisor) & Olsen, L. R. (Supervisor)

  01/11/2021 → 30/04/2025

  Project: PhD

• Systemic modelling for sustainable prioritisation of resources

  Psyrri, G. (PhD Student), Lima, A. T. (Main Supervisor) & Hauschild, M. Z. (Supervisor)

  01/11/2021 → 30/10/2025

  Project: PhD

• Host range and epidemiology of antibiotic resistance in global genome collections

  Thorn, A. V. (PhD Student), Aarestrup, F. M. (Main Supervisor) & Munk, P. (Supervisor)

  01/11/2021 → 23/03/2026

  Project: PhD

• Developing drugs based on CRISPR-armed bacteriophage targeting toxigenic Clostridium difficile

  Kristensen, C. S. (PhD Student), Sommer, M. O. A. (Main Supervisor), Haaber, J. K. (Supervisor) & Takos, A. (Supervisor)

  01/09/2021 → 16/09/2025

  Project: PhD

• Edge-AI: Edge-based AI Systems for Predictive Maintenance​​

  Madsen, J. (PI) & Fafoutis, X. (PI)

  01/01/2021 → 31/12/2025

  Project: Research

  • Edge-based 100%
  • AI-based Methods 100%
  • Predictive Maintenance 100%
  • Denmark 66%
  • Wasted Time 33%

• R2R fabrication of pro-bacterial surfaces (R2R ProBac)

  Taboryski, R. (PI), Gram, L. (CoPI) & Kempen, P. (CoPI)

  01/01/2021 → …

  Project: Research

• Comparative Genomics of Actinomycetes

  Sterndorff, E. B. (PhD Student), Weber, T. (Main Supervisor) & Jørgensen, T. S. (Supervisor)

  01/12/2020 → 28/06/2025

  Project: PhD

• Domestication of mixed microbial communities that convert CO2 to chemicals and fuels

  Borch, M. M. (PhD Student), Jensen, T. Ø. (Supervisor) & Nielsen, A. T. (Main Supervisor)

  01/12/2020 → 01/11/2025

  Project: PhD

• Bridging for the future - how digital competence development can accelerate innovation in public organizations

  Weile, A. M. (PhD Student), Madsen, J. (Main Supervisor) & Mora, L. (Supervisor)

  01/11/2020 → 13/10/2025

  Project: PhD

• DIREC: Digital Research Centre Denmark​

  Madsen, J. (Project Manager) & Fafoutis, X. (Project Manager)

  01/01/2020 → 31/12/2026

  Project: Research

  • Digital Research 100%
  • Denmark 100%
  • Research Centre 100%
  • Danish 66%
  • Danish Universities 33%
• Not started

  InRoot: Molecular Mechanisms and Dynamics of Plant-Microbe Interactions at the Root-Soil Interface

  Madsen, J. (PI)

  Project: Research

  • Root-soil Interface 100%
  • Novo Nordisk 100%
  • Plant-microbe Interactions 100%
  • Molecular Mechanism 100%
  • Molecular Dynamics 100%
• Finished

  OTTER: Water Quality Mapping and Monitoring in Copenhagen Harbour

  Hambly, A. C. (Project Participant), Thompson, F. F. (Project Participant), Stedmon, C. (PI), Garmund, R. (Project Participant) & Mariani, P. (Project Participant)

  01/08/2023 → 31/01/2024

  Project: Research

• TAG-EEL: Advancing tagging technology to discover the European eel spawning area (111216)

  Politis, S. N. (PI), Tomkiewicz, J. (Project Participant), Sørensen, S. R. (Project Participant), Koumpiadis, P. (Project Participant), Kalli, A.-A. (Project Participant), Yang, F. (Project Participant), Aarestrup, K. (Project Participant) & Jepsen, N. (Project Participant)

  01/01/2023 → 31/12/2024

  Project: Research

  • European Eel 100%
  • Spawning Ground 100%
  • Eel 100%
  • Anguilla anguilla 100%
  • Spawning 100%

• CampTau: CampTau - Campylobacter-transfer from carcass to meat product in the relative-risk model

  Lassen, B. (Project Participant), Sandberg, M. (PI), Fernández, C. C. (Project Participant) & Takeuchi-Storm, N. (Project Participant)

  01/01/2023 → 31/12/2023

  Project: Research

  • Campylobacter 100%
  • Relative Risk Model 50%
  • Meat Products 50%
  • Carcass 50%
  • Chilling Methods 50%

• Feasibility of Offshore Wind Farm Areas as Multi-Use Platforms for Lower-Trophic Aquaculture

  Taylor, D. (PI)

  01/07/2022 → 30/06/2023

  Project: Research

  • Lower Trophic 100%
  • Farm Area 100%
  • Multi-use Platform 100%
  • Aquaculture 100%
  • Offshore Wind Farm 100%

• Modeling of biological sequences for prediction and characterization of pathogenicity using deep learning

  Ferrer Florensa, A. (PhD Student), Aarestrup, F. M. (Main Supervisor), Almagro Armenteros, J. J. (Supervisor) & Nielsen, H. (Supervisor)

  15/04/2022 → 14/04/2025

  Project: PhD

• Strategies to reduce the burden of antimicrobial resistance

  Brinch, M. L. (PhD Student), Hald, T. (Main Supervisor), Ribeiro Duarte, A. S. (Supervisor), Apenteng, O. O. (Supervisor), Emborg, H.-D. (Examiner) & Stärk, K. (Examiner)

  15/04/2022 → 14/04/2025

  Project: PhD

• Literate Programming of Biology

  Levassor, L. (PhD Student), Frandsen, R. J. N. (Main Supervisor), Madsen, J. (Supervisor), Weber, T. (Supervisor), Carbonell, P. (Examiner) & Lübeck, M. (Examiner)

  01/04/2022 → 31/03/2025

  Project: PhD

• Liquid coatings without use of solvents

  Frederiksen, N. S. (PhD Student), Skov, A. L. (Main Supervisor), Yu, L. (Supervisor), A. Brook, M. (Examiner) & Zelisko, P. (Examiner)

  01/04/2022 → 31/03/2025

  Project: PhD

• Optimizing glycosylation as a tool to increase fungal resistance in cereals

  Della Gala, V. (PhD Student), Welner, D. H. (Main Supervisor), Schmidt, S. (Examiner), Hansen, J. (Supervisor) & Jørgensen, B. (Examiner)

  01/03/2022 → 28/02/2025

  Project: PhD

• Data-driven strain design

  Rode, C. (PhD Student), Ozdemir, E. (Supervisor), Yang, L. (Supervisor), Nielsen, L. K. (Main Supervisor), Ceroni, F. (Examiner) & Zelezniak, A. (Examiner)

  01/03/2022 → 28/02/2025

  Project: PhD

• CholerAid: Development of a nanobody-based precision microbiome engineering solution to prevent cholera infections

  Petersson, M. (PhD Student), Gram, L. (Main Supervisor), Laustsen, A. H. (Supervisor), Thrane, S. W. (Supervisor), Schild, S. (Examiner) & Slavny, P. (Examiner)

  01/02/2022 → 31/01/2025

  Project: PhD

• Transport of organic acids and alcohols in yeast Saccharomyces cerevisiae

  Lojko, P. (PhD Student), Borodina, I. (Main Supervisor), Dong, F. (Supervisor), Halkier, B. A. (Examiner) & Paiva, S. C. A. (Examiner)

  01/02/2022 → 27/04/2025

  Project: PhD

• Scaling up of Trickle Bed Bioreactors for high rate gas fermentations

  Dutta, S. (PhD Student), Skiadas, I. V. (Main Supervisor), Gavala, H. N. (Supervisor), Sukumara, S. (Supervisor), Worberg, A. (Supervisor), Antonopoulou, G. (Examiner) & Buffiere, P. (Examiner)

  15/01/2022 → 22/04/2025

  Project: PhD

• Selective Delivery of Drugs to the CNS for Treatment of Neurological Diseases

  Lillethorup, I. A. (PhD Student), Qvortrup, K. (Main Supervisor), Duus, J. Ø. (Supervisor), Rautio, J. (Examiner) & Clausen, R. P. (Examiner)

  01/01/2022 → 31/12/2024

  Project: PhD

• Sustainable production of volatile biochemicals using synthetic biology

  Millgaard, M. (PhD Student), Nielsen, A. T. (Main Supervisor), Jensen, S. I. (Supervisor), Claassens, N. J. H. P. (Examiner) & Michael Spormann, A. (Examiner)

  01/01/2022 → 31/12/2024

  Project: PhD

• Bioinformatic analysis of the gut-microbiome during aging and following late-life interventions with respect to cognitive function

  Yoou, M. (PhD Student), Pedersen, A. G. (Main Supervisor), Eklund, A. C. (Supervisor), Nielsen, D. S. (Examiner), Panagiotou, G. (Examiner) & Nielsen, H. B. (Supervisor)

  01/01/2022 → 31/12/2024

  Project: PhD

• Evolution of the Genetic Heterogeneity during Fermentation Process Scale-up

  Munkler, L. P. (PhD Student), Sommer, M. O. A. (Main Supervisor), Woodley, J. (Supervisor), Worberg, A. (Supervisor), Heins, A.-L. (Examiner) & Jensen, B. A. H. (Examiner)

  01/01/2022 → 31/12/2024

  Project: PhD

• The ANAEROBic treasure trunk - ANAEROB

  Giangeri, G. (PhD Student), Angelidaki, I. (Main Supervisor), Tsapekos, P. (Supervisor), Campanaro, S. (Supervisor), Nielsen, P. (Examiner) & Sousa, D. (Examiner)

  01/01/2022 → 22/04/2025

  Project: PhD

• Microbiome-specific T-cell dynamics in health and disease

  Pedersen, T. K. (PhD Student), Brix, S. (Main Supervisor), Xavier, R. (Supervisor), Agace, W. W. (Examiner) & Sokol, H. (Examiner)

  15/12/2021 → 14/12/2024

  Project: PhD

• The effect of Biocides on Antimicrobial Resistance Transmission

  He, Z. (PhD Student), Zhu, Y.-G. (Supervisor), Dechesne, A. (Main Supervisor), Smets, B. F. (Supervisor), Jelsbak, L. (Supervisor), Farewell, A. (Examiner) & Virta, M. (Examiner)

  01/12/2021 → 31/12/2024

  Project: PhD

• Multi-omic analysis of methane fermentation process for optimising single cell protein production

  Funder, M. T. (PhD Student), Nielsen, L. K. (Main Supervisor), Sonnenschein, N. (Supervisor), Sudarsan, S. (Supervisor), Karande, R. (Examiner) & Acosta, M. A. T. (Examiner)

  01/12/2021 → 28/02/2025

  Project: PhD

• Catalyst application in three-dimensional porous electrodes for alkaline electrolysis

  Russo, A. (PhD Student), Jensen, J. O. (Main Supervisor), Kraglund, M. R. (Supervisor), Zhang, W. (Supervisor), Cho, E. 2. (Supervisor), Proost, J. (Examiner) & Wågberg, T. (Examiner)

  01/12/2021 → 11/03/2025

  Project: PhD

  • Nanofiber 100%
  • Plating 50%
  • Electrospinning 42%
  • Anode 28%
  • Cathode 28%

• Microbial syntRophic metAbolism of CO2 on 3D carbon microeLectrodes for biohExanol production (MIRACLE)

  Fernandez-Avila Cobo, M. (PhD Student), Zhang, Y. (Main Supervisor), Keller, S. S. (Supervisor), Rezaei, B. (Supervisor), Canudas, A. G. (Examiner) & Herkendell, K. (Examiner)

  01/12/2021 → 28/02/2025

  Project: PhD

• The development of a digital twin for mixing observation and optimization

  de Carfort, J. L. N. (PhD Student), Krühne, U. (Main Supervisor) & Gernaey, K. V. (Supervisor)

  01/12/2021 → 02/04/2025

  Project: PhD

• Advanced carbon micro- and nanofabrication for electrochemical energy systems

  Ramezannezhad, M. (PhD Student), Keller, S. S. (Main Supervisor), Jansen, H. (Supervisor), Rezaei, B. (Supervisor), Wang, C. (Examiner) & Kutter, J. P. (Examiner)

  01/12/2021 → 30/11/2024

  Project: PhD

• Phase Plate Fabrication and Application for Electron Microscopy

  Hufe, M. (PhD Student), Kempen, P. (Main Supervisor), Beleggia, M. (Supervisor) & Keller, S. S. (Supervisor)

  01/12/2021 → 16/02/2025

  Project: PhD

• Bacterial central carbon metabolism as emerging drug target

  Mathiassen, T. B. W. (PhD Student), Jensen, P. R. (Main Supervisor), Meier, S. (Supervisor), Elena-Herrmann, B. (Examiner) & Laustsen, C. (Examiner)

  01/12/2021 → 15/02/2025

  Project: PhD

• Systemic modelling of current product development approaches towards sustainability

  Vilochani, S. (PhD Student), Pigosso, D. C. A. (Main Supervisor), Hauschild, M. Z. (Supervisor), McAloone, T. C. (Supervisor), Isaksson Hallstedt, S. (Examiner) & Reyes, T. (Examiner)

  01/12/2021 → 22/04/2025

  Project: PhD

  • Systemic Modeling 100%
  • Product Development 100%
  • Management Practices 100%
  • Manufacturing Firms 100%
  • Development Approach 100%

• Small Mechanical Devices for Gut Sampling

  Moro, G. (PhD Student), Boisen, A. (Main Supervisor), Ghavami, M. (Supervisor), Ciuti, G. (Examiner) & Koulaouzidis, A. (Examiner)

  01/12/2021 → 22/04/2025

  Project: PhD

• Developing scientifically-robust methodologies for companies to quantitatively assess their SDG performances

  Thammaraksa, C. (PhD Student), Laurent, A. (Main Supervisor), Astrup, T. F. (Supervisor), Hauschild, M. Z. (Supervisor), Nielsen, J. P. (Examiner) & Sala, S. (Examiner)

  01/12/2021 → 28/02/2025

  Project: PhD

• Bacterial central carbon metabolism and antibiotic efficacy

  Zahid, A. L. N. (PhD Student), Jensen, P. R. (Main Supervisor), Meier, S. (Supervisor), Bonde Bertelsen, L. (Examiner) & Zampieri, M. (Examiner)

  01/12/2021 → 28/02/2025

  Project: PhD

• Proteome dynamics of bacterial pathogens during infection: biomarkers for diagnostics

  Svetlicic, E. (PhD Student), Mijakovic, I. (Main Supervisor), Jers, C. (Supervisor), Grangeasse, C. (Examiner) & Macek, B. (Examiner)

  15/11/2021 → 05/11/2024

  Project: PhD

  • Pathogenicity 100%
  • Proteomics 100%
  • Staphylococcus Aureus 100%
  • Infectious Agent 33%
  • Virulence Factor 16%

• Digitalisation of Pilot Plant Operations

  Caccavale, F. (PhD Student), Krühne, U. (Main Supervisor), Gargalo, C. L. D. C. L. (Supervisor), Gernaey, K. V. (Supervisor), Glassey, J. (Examiner) & Young, B. (Examiner)

  01/11/2021 → 11/03/2025

  Project: PhD

  • Chemical Engineering 100%
  • Artificial Intelligence 100%
  • Chemical Engineer 36%
  • Chemical Reaction Engineering 18%
  • Critical Creativity 10%

• Metabolic Engineering of Yeast to Produce Natural Colors

  Glitz, C. U. (PhD Student), Borodina, I. (Main Supervisor), Babaei, M. (Supervisor), Halbwirth, H. (Examiner) & Milne, N. (Examiner)

  01/11/2021 → 11/03/2025

  Project: PhD

  • Betanin 100%
  • Natural Food Colorant 100%
  • Food Coloring 100%
  • Amaranthin 42%
  • Yarrowia lipolytica 33%

• Alternative, green downstream routes for extraction and separation of modified polyhydroxyalkanoates obtained by bacterial fermentation

  Didion, Y. P. (PhD Student), Pinelo, M. (Main Supervisor), Nikel, P. I. (Supervisor), Duarte, A. R. C. (Examiner) & Zdarta, J. (Examiner)

  01/11/2021 → 22/04/2025

  Project: PhD

• Human Milk Oligosaccharides¿ Impact on Maturation of the Gut Microbiota

  So, Y. (PhD Student), Hachem, M. A. (Main Supervisor), Arumugam, M. (Supervisor), Luis, A. S. D. J. V. (Examiner) & Nielsen, D. S. (Examiner)

  01/11/2021 → 22/04/2025

  Project: PhD

• A sustainability model for coating systems

  Juhl, M. (PhD Student), Dam-Johansen, K. (Main Supervisor), Hauschild, M. Z. (Supervisor), Codolar, S. A. (Examiner) & Strube, O. I. (Examiner)

  15/10/2021 → 11/02/2025

  Project: PhD

• Novel therapeutics for Netherton Syndrome

  Christiansen, C. R. (PhD Student), Laustsen-Kiel, A. H. (Supervisor), Clauss, A. J. (Supervisor), Francavilla, C. (Main Supervisor), Brender Read, C. (Supervisor), Duenstl, G. (Examiner), Werner, S. (Examiner) & Søgaard, P. P. (Supervisor)

  15/10/2021 → 11/03/2025

  Project: PhD

  • Netherton Syndrome 100%
  • SPINK1 100%
  • KLK7 60%
  • KLK5 40%
  • Kazal Type 25%