Division of Epidemiology and Microbial Genomics

  1. 2014
  2. Published

    Finding the Optimum Scenario in Risk-benefit Assessment: An Example on Vitamin D. / Berjia, Firew Lemma; Hoekstra, J.; Verhagen, H.; Poulsen, Morten; Andersen, Rikke; Nauta, Maarten.

    In: European journal of nutrition & food safety, Vol. 4, No. 4, 2014, p. 558-576.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  3. Published

    Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark. / Qin, Yanan; Hasman, Henrik; Aarestrup, Frank Møller; Alwathnani, Hend A.; Rensing, Christopher.

    In: Genome Announcements, Vol. 2, No. 6, e01334-14 , 2014.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  4. Published

    Genome Sequences of Two Copper-Resistant Escherichia coli Strains Isolated from Copper-Fed Pigs. / Lüthje, Freja L.; Hasman, Henrik; Aarestrup, Frank Møller; Alwathnani, Hend A.; Rensing, Christopher.

    In: Genome Announcements, Vol. 2, No. 6, e01341-14 , 2014.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  5. Published

    Genome-Wide High-Throughput Screening to Investigate Essential Genes Involved in Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Survival. / Christiansen, Mette Theilgaard; Kaas, Rolf Sommer; Chaudhuri, Roy R.; Holmes, Mark A.; Hasman, Henrik; Aarestrup, Frank Møller.

    In: PLOS ONE, Vol. 9, No. 2, e89018, 2014.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  6. Published

    Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages. / Deng, Xiangyu; Desai, Prerak T.; den Bakker, Henk C.; Mikoleit, Matthew; Tolar, Beth; Trees, Eija; Hendriksen, Rene S.; Frye, Jonathan G.; Porwollik, Steffen; Weimer, Bart C.; Wiedmann, Martin; Weinstock, George M.; Fields, Patricia I.; McClelland, Michael.

    In: EMERGING INFECTIOUS DISEASES, Vol. 20, No. 9, 2014, p. 1481-1489.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  7. Published

    Genomic epidemiology of the haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. / Eppinger, Mark; Pearson, Talima; Koenig, Sara S. K.; Pearson, Ofori; Hicks, Nathan; Agrawal, Sonia; Sanjar, Fatemeh; Galens, Kevin; Daugherty, Sean; Crabtree, Jonathan; Hendriksen, Rene S.; Price, Lance B.; Upadhyay, Bishnu P.; Shakya, Geeta; Fraser, Claire M.; Ravel, Jacques; Keim, Paul S.

    In: mBio (Online), Vol. 5, No. 6, 2014.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  8. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  9. Published

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  10. Published

    Large-scale bioreactor production of the herbicide-degrading Aminobacter sp. strain MSH1. / Schultz-Jensen, Nadja; Knudsen, Berith Elkær; Frkova, Zuzana; Aamand, Jens; Johansen, Tina; Thykær, Jette; Sørensen, Sebastian R.

    In: Applied Microbiology and Biotechnology, Vol. 98, No. 5, 2014, p. 2335-2344.

    Research output: Contribution to journalJournal article – Annual report year: 2014Researchpeer-review

  11. Published

    Microbiological Safety of Meat: Salmonella spp. / Wingstrand, Anne; Aabo, Søren.

    Encyclopedia of Meat Sciences 2e. ed. / Carrick Devine; Michael Dikemann. Vol. 2 Elsevier, 2014. p. 367-375.

    Research output: Chapter in Book/Report/Conference proceedingBook chapter – Annual report year: 2014Researchpeer-review

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