Organisation profile
Organisation profile
Our mission in the Cell Diversity Lab is to unravel fundamental biological concepts controlling heterogeneity within complex biological systems, especially those of the blood system and cancer.
We aim to use our leading position in the scMS field to identify druggable signalling mechanisms that will advance therapy and diagnostics for patients suffering from complex diseases.
By computationally integrating several experimental approaches such as Mass Spectrometry (MS), Next-Generation Sequencing, FACS sorting and in vivo xenograft models, we aim to gain a better understanding of cellular signal processing at the single cell level. The ultimate ambition is to translate the molecular insights derived from a range of modalities (DNA, mRNA and proteins) to in-depth knowledge about how cellular heterogeneity contributes to disease phenotypes and ultimately, development of effective and personalized therapeutic strategies.
We cherish our broad collaboration network, spanning across both international academia and industry. We are a technology- and data-driven lab, having more or less equal focus on method development and biological interrogations.
We are also aiming to keep a 50/50 split between computational and wet-lab work, which is reflected by the profiles of our lab-members. We also closely interact with other groups and departments at DTU, and especially the DTU Proteomics Core, with whom we co-develop most of our MS-based methods for cutting-edge biology, with a significant focus on analysis of extremely limited sample amounts all the way down to single cells.
We currently have access to ThermoFisher Orbitrap Eclipse, Exploris480 and QExactive MS instrumentation, and rely on EasyLC1200, Ultimate3000 and EvoSep One instruments for our chromatography needs. We provide a comprehensive training environment for our students and postdocs, and welcome unsolicited applications. We are happy to support applications for scholarships and fellowships such as Marie Curie, EMBO, Novo Nordisk Foundation, Lundbeck Foundation, Human Frontiers and others.
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Collaborations and top research areas from the last five years
Profiles
Research output
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A Framework for Database Search with AI Models in Mass Spectrometry-Based Proteomics
Kalogeropoulos, K., Van Goey, J., Jenkins, T. P. & Eloff, K. M., 2026, In: Journal of Proteome Research. 25, 5, p. 2234-2242 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Generalizable direct protein sequencing with InstaNexus
Reverenna, M., Nielsen, M. W., Wolff, D. S., Daniel, J., Lytra, E., Thumtecho, S., Colaianni, P. D., Ljungars, A., Laustsen, A. H., Schoof, E. M., Van Goey, J., Jenkins, T. P., Lukassen, M. V., Santos, A. & Kalogeropoulos, K., 2026, In: Molecular and Cellular Proteomics. 25, 4, 18 p., 101547.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile4 Downloads (Orbit) -
HT SpaceM enables high-throughput mapping of metabolic diversity at the single-cell level
Daucke, R. & Schoof, E. M., 2026, In: Cell Reports Methods. 6, 1, 3 p., 101268.Research output: Contribution to journal › Journal article › Research › peer-review
Open AccessFile5 Downloads (Orbit)
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AI-Driven Design of Selective Inhibitors for Matrix Metalloproteinases (MMPs)
Lytra, E. (PhD Student), Jenkins, T. P. (Main Supervisor) & Kalogeropoulos, K. (Supervisor)
01/12/2025 → 30/11/2028
Project: PhD
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Single-cell technologies to improve biotherapeutic protein production
Weicher, J. (PhD Student), Hefzi, H. (Main Supervisor) & Schoof, E. (Supervisor)
15/07/2025 → 14/07/2028
Project: PhD
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Improving single-cell proteomics through advanced sample preparation
Hartlmayr, D. N. (PhD Student), Schoof, E. (Main Supervisor) & Hefzi, H. (Supervisor)
15/01/2025 → 14/01/2028
Project: PhD
Activities
- 1 Conference presentations
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Quantifying allergenic versus non-allergenic peanut proteins by mass spectrometry
Yue, S. R. (Speaker), Lukassen, M. V. (Other), Schoof, E. M. (Other), Verhoeckx, K. C. M. (Other), Houben, G. F. (Other), Madsen, C. B. (Other), Sancho Vega, A. I. (Other) & Bøgh, K. L. (Other)
21 Nov 2024 → 23 Nov 2024Activity: Talks and presentations › Conference presentations