Key Players in the Genetic Switch of Bacteriophage TP901-1

Publication: Research - peer-reviewJournal article – Annual report year: 2011

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Key Players in the Genetic Switch of Bacteriophage TP901-1. / Alsing, Anne; Pedersen, Margit; Sneppen, Kim; Hammer, Karin.

In: Biophysical Journal, Vol. 100, No. 2, 2011, p. 313-321.

Publication: Research - peer-reviewJournal article – Annual report year: 2011

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Alsing, Anne; Pedersen, Margit; Sneppen, Kim; Hammer, Karin / Key Players in the Genetic Switch of Bacteriophage TP901-1.

In: Biophysical Journal, Vol. 100, No. 2, 2011, p. 313-321.

Publication: Research - peer-reviewJournal article – Annual report year: 2011

Bibtex

@article{2fa8dd9ecbf243c38c2636d459797958,
title = "Key Players in the Genetic Switch of Bacteriophage TP901-1",
publisher = "Biophysical Society",
author = "Anne Alsing and Margit Pedersen and Kim Sneppen and Karin Hammer",
year = "2011",
doi = "10.1016/j.bpj.2010.12.3681",
volume = "100",
number = "2",
pages = "313--321",
journal = "Biophysical Journal",
issn = "0006-3495",

}

RIS

TY - JOUR

T1 - Key Players in the Genetic Switch of Bacteriophage TP901-1

A1 - Alsing,Anne

A1 - Pedersen,Margit

A1 - Sneppen,Kim

A1 - Hammer,Karin

AU - Alsing,Anne

AU - Pedersen,Margit

AU - Sneppen,Kim

AU - Hammer,Karin

PB - Biophysical Society

PY - 2011

Y1 - 2011

N2 - After infection of a sensitive host temperate phages may enter either a lytic or a lysogenic pathway leading to new phage assembly or silencing as a prophage, respectively. The decision about which pathway to enter is centered in the genetic switch of the phage. In this work, we explore the bistable genetic switch of bacteriophage TP901-1 through experiments and statistical mechanical modeling. We examine the activity of the lysogenic promoter Pr at different concentrations of the phage repressor, CI, and compare the effect of CI on Pr in the presence or absence of the phage-encoded MOR protein expressed from the lytic promoter Pl. We find that the presence of large amounts of MOR prevents repression of the Pr promoter, verifying that MOR works as an antirepressor. We compare our experimental data with simulations based on previous mathematical formulations of this switch. Good agreement between data and simulations verify the model of CI repression of Pr. By including MOR in the simulations, we are able to discard a model that assumes that CI and MOR do not interact before binding together at the DNA to repress Pr. The second model of Pr repression assumes the formation of a CI:MOR complex in the cytoplasm. We suggest that a CI:MOR complex may exist in different forms that either prevent or invoke Pr repression, introducing a new twist on mixed feedback systems.

AB - After infection of a sensitive host temperate phages may enter either a lytic or a lysogenic pathway leading to new phage assembly or silencing as a prophage, respectively. The decision about which pathway to enter is centered in the genetic switch of the phage. In this work, we explore the bistable genetic switch of bacteriophage TP901-1 through experiments and statistical mechanical modeling. We examine the activity of the lysogenic promoter Pr at different concentrations of the phage repressor, CI, and compare the effect of CI on Pr in the presence or absence of the phage-encoded MOR protein expressed from the lytic promoter Pl. We find that the presence of large amounts of MOR prevents repression of the Pr promoter, verifying that MOR works as an antirepressor. We compare our experimental data with simulations based on previous mathematical formulations of this switch. Good agreement between data and simulations verify the model of CI repression of Pr. By including MOR in the simulations, we are able to discard a model that assumes that CI and MOR do not interact before binding together at the DNA to repress Pr. The second model of Pr repression assumes the formation of a CI:MOR complex in the cytoplasm. We suggest that a CI:MOR complex may exist in different forms that either prevent or invoke Pr repression, introducing a new twist on mixed feedback systems.

U2 - 10.1016/j.bpj.2010.12.3681

DO - 10.1016/j.bpj.2010.12.3681

JO - Biophysical Journal

JF - Biophysical Journal

SN - 0006-3495

IS - 2

VL - 100

SP - 313

EP - 321

ER -