Immune epitope database analysis resource

Publication: Research - peer-reviewJournal article – Annual report year: 2012

Standard

Immune epitope database analysis resource. / Kim, Yohan; Ponomarenko, Julia; Zhu, Zhanyang; Tamang, Dorjee; Wang, Peng; Greenbaum, Jason; Lundegaard, Claus; Sette, Alessandro; Lund, Ole; Bourne, Philip E.; Nielsen, Morten; Peters, Bjoern.

In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W525-W530.

Publication: Research - peer-reviewJournal article – Annual report year: 2012

Harvard

Kim, Y, Ponomarenko, J, Zhu, Z, Tamang, D, Wang, P, Greenbaum, J, Lundegaard, C, Sette, A, Lund, O, Bourne, PE, Nielsen, M & Peters, B 2012, 'Immune epitope database analysis resource' Nucleic Acids Research, vol 40, no. W1, pp. W525-W530., 10.1093/nar/gks438

APA

Kim, Y., Ponomarenko, J., Zhu, Z., Tamang, D., Wang, P., Greenbaum, J., ... Peters, B. (2012). Immune epitope database analysis resource. Nucleic Acids Research, 40(W1), W525-W530. 10.1093/nar/gks438

CBE

Kim Y, Ponomarenko J, Zhu Z, Tamang D, Wang P, Greenbaum J, Lundegaard C, Sette A, Lund O, Bourne PE, Nielsen M, Peters B. 2012. Immune epitope database analysis resource. Nucleic Acids Research. 40(W1):W525-W530. Available from: 10.1093/nar/gks438

MLA

Kim, Yohan et al."Immune epitope database analysis resource". Nucleic Acids Research. 2012, 40(W1). W525-W530. Available: 10.1093/nar/gks438

Vancouver

Kim Y, Ponomarenko J, Zhu Z, Tamang D, Wang P, Greenbaum J et al. Immune epitope database analysis resource. Nucleic Acids Research. 2012;40(W1):W525-W530. Available from: 10.1093/nar/gks438

Author

Kim, Yohan; Ponomarenko, Julia; Zhu, Zhanyang; Tamang, Dorjee; Wang, Peng; Greenbaum, Jason; Lundegaard, Claus; Sette, Alessandro; Lund, Ole; Bourne, Philip E.; Nielsen, Morten; Peters, Bjoern / Immune epitope database analysis resource.

In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W525-W530.

Publication: Research - peer-reviewJournal article – Annual report year: 2012

Bibtex

@article{4e11a40e7a2f462f87cfb55557bbbd3d,
title = "Immune epitope database analysis resource",
keywords = "immune epitope database analysis resource, immune response, MHC-I, MHC-II, peptide, 00530, General biology - Information, documentation, retrieval and computer applications, 02506, Cytology - Animal, 10064, Biochemistry studies - Proteins, peptides and amino acids, 15002, Blood - Blood and lymph studies, 15004, Blood - Blood cell studies, 34502, Immunology - General and methods, Chemical Coordination and Homeostasis, Computational Biology, B-cell immune system, blood and lymphatics, T-cell immune system, blood and lymphatics, computer software package computer software, epitope prediction tool mathematical and computer techniques, homology mapping tool mathematical and computer techniques, Computer Applications, Immune System",
publisher = "Oxford University Press",
author = "Yohan Kim and Julia Ponomarenko and Zhanyang Zhu and Dorjee Tamang and Peng Wang and Jason Greenbaum and Claus Lundegaard and Alessandro Sette and Ole Lund and Bourne, {Philip E.} and Morten Nielsen and Bjoern Peters",
year = "2012",
doi = "10.1093/nar/gks438",
volume = "40",
number = "W1",
pages = "W525--W530",
journal = "Nucleic Acids Research",
issn = "0305-1048",

}

RIS

TY - JOUR

T1 - Immune epitope database analysis resource

A1 - Kim,Yohan

A1 - Ponomarenko,Julia

A1 - Zhu,Zhanyang

A1 - Tamang,Dorjee

A1 - Wang,Peng

A1 - Greenbaum,Jason

A1 - Lundegaard,Claus

A1 - Sette,Alessandro

A1 - Lund,Ole

A1 - Bourne,Philip E.

A1 - Nielsen,Morten

A1 - Peters,Bjoern

AU - Kim,Yohan

AU - Ponomarenko,Julia

AU - Zhu,Zhanyang

AU - Tamang,Dorjee

AU - Wang,Peng

AU - Greenbaum,Jason

AU - Lundegaard,Claus

AU - Sette,Alessandro

AU - Lund,Ole

AU - Bourne,Philip E.

AU - Nielsen,Morten

AU - Peters,Bjoern

PB - Oxford University Press

PY - 2012

Y1 - 2012

N2 - The immune epitope database analysis resource (IEDB-AR: http://tools.iedb.org) is a collection of tools for prediction and analysis of molecular targets of T- and B-cell immune responses (i.e. epitopes). Since its last publication in the NAR webserver issue in 2008, a new generation of peptide:MHC binding and T-cell epitope predictive tools have been added. As validated by different labs and in the first international competition for predicting peptide:MHC-I binding, their predictive performances have improved considerably. In addition, a new B-cell epitope prediction tool was added, and the homology mapping tool was updated to enable mapping of discontinuous epitopes onto 3D structures. Furthermore, to serve a wider range of users, the number of ways in which IEDB-AR can be accessed has been expanded. Specifically, the predictive tools can be programmatically accessed using a web interface and can also be downloaded as software packages.

AB - The immune epitope database analysis resource (IEDB-AR: http://tools.iedb.org) is a collection of tools for prediction and analysis of molecular targets of T- and B-cell immune responses (i.e. epitopes). Since its last publication in the NAR webserver issue in 2008, a new generation of peptide:MHC binding and T-cell epitope predictive tools have been added. As validated by different labs and in the first international competition for predicting peptide:MHC-I binding, their predictive performances have improved considerably. In addition, a new B-cell epitope prediction tool was added, and the homology mapping tool was updated to enable mapping of discontinuous epitopes onto 3D structures. Furthermore, to serve a wider range of users, the number of ways in which IEDB-AR can be accessed has been expanded. Specifically, the predictive tools can be programmatically accessed using a web interface and can also be downloaded as software packages.

KW - immune epitope database analysis resource

KW - immune response

KW - MHC-I

KW - MHC-II

KW - peptide

KW - 00530, General biology - Information, documentation, retrieval and computer applications

KW - 02506, Cytology - Animal

KW - 10064, Biochemistry studies - Proteins, peptides and amino acids

KW - 15002, Blood - Blood and lymph studies

KW - 15004, Blood - Blood cell studies

KW - 34502, Immunology - General and methods

KW - Chemical Coordination and Homeostasis

KW - Computational Biology

KW - B-cell immune system, blood and lymphatics

KW - T-cell immune system, blood and lymphatics

KW - computer software package computer software

KW - epitope prediction tool mathematical and computer techniques

KW - homology mapping tool mathematical and computer techniques

KW - Computer Applications

KW - Immune System

U2 - 10.1093/nar/gks438

DO - 10.1093/nar/gks438

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

IS - W1

VL - 40

SP - W525-W530

ER -