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FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data. / Manijak, Mieszko P.; Nielsen, Henrik Bjørn.

In: B M C Research Notes, Vol. 4, No. 1, 2011, p. 181.

Publication: Research - peer-reviewJournal article – Annual report year: 2011

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Manijak, Mieszko P.; Nielsen, Henrik Bjørn / FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data.

In: B M C Research Notes, Vol. 4, No. 1, 2011, p. 181.

Publication: Research - peer-reviewJournal article – Annual report year: 2011

Bibtex

@article{262d6411e2bc4a98a9b06cc9436ddae5,
title = "FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data",
publisher = "BioMed Central Ltd.",
author = "Manijak, {Mieszko P.} and Nielsen, {Henrik Bjørn}",
note = "© 2011 Nielsen et al; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.",
year = "2011",
doi = "10.1186/1756-0500-4-181",
volume = "4",
number = "1",
pages = "181",
journal = "B M C Research Notes",
issn = "1756-0500",

}

RIS

TY - JOUR

T1 - FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data

A1 - Manijak,Mieszko P.

A1 - Nielsen,Henrik Bjørn

AU - Manijak,Mieszko P.

AU - Nielsen,Henrik Bjørn

PB - BioMed Central Ltd.

PY - 2011

Y1 - 2011

N2 - BACKGROUND: Although, systematic analysis of gene annotation is a powerful tool for interpreting gene expression data, it sometimes is blurred by incomplete gene annotation, missing expression response of key genes and secondary gene expression responses. These shortcomings may be partially circumvented by instead matching gene expression signatures to signatures of other experiments. FINDINGS: To facilitate this we present the Functional Association Response by Overlap (FARO) server, that match input signatures to a compendium of 242 gene expression signatures, extracted from more than 1700 Arabidopsis microarray experiments. CONCLUSIONS: Hereby we present a publicly available tool for robust characterization of Arabidopsis gene expression experiments which can point to similar experimental factors in other experiments. The server is available at http://www.cbs.dtu.dk/services/faro/.

AB - BACKGROUND: Although, systematic analysis of gene annotation is a powerful tool for interpreting gene expression data, it sometimes is blurred by incomplete gene annotation, missing expression response of key genes and secondary gene expression responses. These shortcomings may be partially circumvented by instead matching gene expression signatures to signatures of other experiments. FINDINGS: To facilitate this we present the Functional Association Response by Overlap (FARO) server, that match input signatures to a compendium of 242 gene expression signatures, extracted from more than 1700 Arabidopsis microarray experiments. CONCLUSIONS: Hereby we present a publicly available tool for robust characterization of Arabidopsis gene expression experiments which can point to similar experimental factors in other experiments. The server is available at http://www.cbs.dtu.dk/services/faro/.

U2 - 10.1186/1756-0500-4-181

DO - 10.1186/1756-0500-4-181

JO - B M C Research Notes

JF - B M C Research Notes

SN - 1756-0500

IS - 1

VL - 4

SP - 181

ER -