Ole Lund

  1. 2014
  2. Published
  3. Published
  4. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  5. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  6. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  7. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  8. E-pub ahead of print

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage.. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Gerritsen, Bram; Kesmir, Can; Miles, John J.; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Journal of Experimental Medicine, Vol. 211, No. 8, 2014, p. 1601-1610.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  10. Published

    Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Noyan, Kajsa; Svärd, Jenny; Barqasho, Babilonia; Sönnerborg, Anders; Lund, Ole; Nowak, Piotr; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 192, No. 5, 2014, p. 2099-2108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  11. Published
  12. Published
  13. Published
  14. Published

    Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms. / Kaas, Rolf Sommer; Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller; Lund, Ole.

    In: PLOS ONE, Vol. 9, No. 8, e104984, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published

    T-bet and Eomes Are Differentially Linked to the Exhausted Phenotype of CD8+T Cells in HIV Infection. / Buggert, Marcus; Tauriainen, Johanna; Yamamoto, Takuya; Frederiksen, Juliet Wairimu; Ivarsson, Martin A.; Michaelsson, Jakob; Lund, Ole; Hejdeman, Bo; Jansson, Marianne; Sonnerborg, Anders; Koup, Richard A.; Betts, Michael R.; Karlsson, Annika C.

    In: P L o S Pathogens, Vol. 10, No. 7, e1004251, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  16. 2013
  17. Published

    Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.

    Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  18. Published
  19. Published

    NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ. / Karosiene, Edita; Rasmussen, Michael; Blicher, Thomas; Lund, Ole; Buus, S.; Nielsen, Morten Munch.

    In: Immunogenetics, Vol. 65, No. 10, 2013, p. 711-724.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  20. Published

    Epitope prediction methods. / Karosiene, Edita; Nielsen, Morten (Main supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 127 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  21. Published

    Evaluation of peptide selection approaches for epitope‐based vaccine design. / Schubert, B.; Lund, Ole; Nielsen, Morten.

    In: Tissue Antigens, Vol. 82, No. 4, 2013, p. 243–251.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  22. Published
  23. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Biology of Blood and Marrow Transplantation, Vol. 19, No. 2, 2013, p. S335.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  24. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 317-318.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  25. Published

    Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads. / Gautier, Laurent; Lund, Ole.

    In: P L o S One, Vol. 8, No. 12, e83784, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  26. Published

    MHCcluster, a method for functional clustering of MHC molecules. / Thomsen, Martin Christen Frølund; Lundegaard, Claus; Buus, Søren; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 65, No. 9, 2013, p. 655-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  27. Published

    NetFCM: A Tool for Automated Flow Cytometric Data Analysis. / Frederiksen, Juliet Wairimu; Lund, Ole; Buggert, M.; Karlsson, A.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 44, 2013, p. 325.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  28. Published

    PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.. / Cosentino, Salvatore; Larsen, Mette Voldby; Aarestrup, Frank Møller; Lund, Ole.

    In: PloS one., Vol. 8, No. 10, 2013, p. e77302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  29. Published

    Real-Time WGS-based Typing of VTEC Isolates for Surveillance and Outbreak Detection. / Joensen, Katrine Grimstrup; Hasman, Henrik; Scheutz, F.; Nielsen, E. M.; Lund, Ole; Aarestrup, Frank Møller.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 209.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  30. Published

    SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments. / Jessen, Leon Ivar; Hoof, Ilka; Lund, Ole; Nielsen, Morten.

    In: Nucleic Acids Research, Vol. 41, No. W1, 2013, p. 20W286-W291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  31. Published

    Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach. / Andreatta, Massimo; Lund, Ole; Nielsen, Morten.

    In: Bioinformatics, Vol. 29, No. 1, 2013, p. 8-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  32. Published

    Structural analysis of B-cell epitopes in antibody:protein complexes. / Kringelum, Jens Vindahl; Nielsen, Morten; Padkjær, Søren Berg; Lund, Ole.

    In: Molecular Immunology, Vol. 53, No. 1-2, 2013, p. 24-34.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  33. Published

    Targeting of conserved gag-epitopes in early HIV infection is associated with lower plasma viral load and slower CD4+ T cell depletion.. / Perez, Carina L. ; Milush, Jeffrey M. ; Buggert, Marcus; Eriksson, Emily M. ; Larsen, Mette Voldby; Liegler, Teri; Hartogensis, Wendy; Bacchetti, Peter; Lund, Ole; Hecht, Frederick M. ; Nixon, Douglas F. ; Karlsson, Annika C. .

    In: AIDS Research and Human Retroviruses, Vol. 29, No. 3, 2013, p. 602-612.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  34. Published

    VAR2CSA Epitope Identification - Finding All the Needles in All the Haystacks. / Jessen, L. E.; Ditlev, S. B.; Schafer-Nielsen, C.; Buus, S.; Salanti, A.; Lund, Ole.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 318-319.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  35. 2012
  36. Published

    Characterization of HIV-Specific CD4+T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage. / Buggert, Marcus; Norstrom, Melissa M.; Czarnecki, Chris; Tupin, Emmanuel; Luo, Ma; Gyllensten, Katarina; Sonnerborg, Anders; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, Annika C.

    In: P L o S One, Vol. 7, No. 7, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  37. Published

    Concepts in Mechanism Based Modeling. / Lund, Ole; Laugesen, Jakob Lund; Mosekilde, Erik.

    Biosimulation in Biomedical Research, Health Care and Drug Development. Springer, 2012. p. 19-41.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2012

  38. Published

    Discovering sequence motifs in quantitative and qualitative pepetide data. / Andreatta, Massimo; Nielsen, Morten (Supervisor); Lund, Ole (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 105 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  39. Published
  40. Published

    Identification of a Novel UTY‐Encoded Minor Histocompatibility Antigen. / Mortensen, B. K.; Rasmussen, A. H.; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Braendstrup, P.; Harndahl, Mikkel Nors; Rasmussen, M.; Buus, S.; Stryhn, A.; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 76, No. 2, 2012, p. 141-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  41. Published

    Immune epitope database analysis resource. / Kim, Yohan; Ponomarenko, Julia; Zhu, Zhanyang; Tamang, Dorjee; Wang, Peng; Greenbaum, Jason; Lundegaard, Claus; Sette, Alessandro; Lund, Ole; Bourne, Philip E.; Nielsen, Morten; Peters, Bjoern.

    In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W525-W530.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  42. Published
  43. Published

    Mycobacterium leprae virulence-associated peptides are indicators of exposure to M. leprae in Brazil, Ethiopia and Nepal. / Bobosha, Kidist; Tang, Sheila Tuyet; van der Ploeg-van Schip, Jolien J.; Bekele, Yonas; Martins, Marcia V. S. B.; Lund, Ole; Franken, Kees L. M. C.; Khadge, Saraswoti; de Andrade Pontes, Maria Araci; Goncalves, Heitor de Sa; Hussien, Jemal; Thapa, Pratibha; Kunwar, Chhatra B.; Hagge, Deanna A.; Aseffa, Abraham; Vidal Pessolani, Maria Cristina; Pereira, Geraldo M. B.; Ottenhoff, Tom H. M.; Geluk, Annemieke.

    In: Instituto Oswaldo Cruz, Rio de Janeiro. Memorias, Vol. 107, 2012, p. 112-123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  44. Published

    NetMHCcons: a consensus method for the major histocompatibility complex class I predictions. / Karosiene, Edita; Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 64, No. 3, 2012, p. 177-186.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  45. Published

    Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?. / Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Expert Review of Vaccines, Vol. 11, No. 1, 2012, p. 43.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  46. Published

    Reliable B cell epitope predictions: impacts of method development and improved benchmarking.. / Kringelum, Jens Vindahl; Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: P L o S Computational Biology, Vol. 8, No. 12, 2012, p. e1002829.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  47. Published
  48. 2011
  49. Published

    An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. / Rasmussen, Morten; Guo, Xiaosen; Wang, Yong; Lohmueller, Kirk E.; Rasmussen, Simon; Albrechtsen, Anders; Skotte, Line; Lindgreen, Stinus; Metspalu, Mait; Jombart, Thibaut; Kivisild, Toomas; Zhai, Weiwei; Eriksson, Anders; Manica, Andrea; Orlando, Ludovic; De La Vega, Francisco M.; Tridico, Silvana; Metspalu, Ene; Nielsen, Kasper; Ávila-Arcos, María C.; Moreno-Mayar, J. Víctor; Muller, Craig; Dortch, Joe; Gilbert, M. Thomas P.; Lund, Ole; Wesolowska, Agata; Karmin, Monika; Weinert, Lucy A.; Wang, Bo; Li, Jun; Tai, Shuaishuai; Xiao, Fei; Hanihara, Tsunehiko; van Driem, George; Jha, Aashish R.; Ricaut, François-Xavier; de Knijff, Peter; Migliano, Andrea B; Gallego Romero, Irene; Kristiansen, Karsten; Lambert, David M.; Brunak, Søren; Forster, Peter; Brinkmann, Bernd; Nehlich, Olaf; Bunce, Michael; Richards, Michael; Gupta, Ramneek; Bustamante, Carlos D.; Krogh, Anders; Foley, Robert A.; Lahr, Marta M.; Balloux, Francois; Sicheritz-Pontén, Thomas; Villems, Richard; Nielsen, Rasmus; Wang, Jun; Willerslev, Eske.

    In: Science, Vol. 334, No. 6052, 2011, p. 94-98.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  50. Published

    Bistability in autoimmune diseases. / Rapin, Nicolas; Mosekilde, Erik; Lund, Ole.

    In: Autoimmunity, Vol. 44, No. 4, 2011, p. 256-260.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  51. Published

    Genome-Based In Silico Identification of New Mycobacterium tuberculosis Antigens Activating Polyfunctional CD8+ T Cells in Human Tuberculosis. / Tang, Sheila Tuyet; van Meijgaarden, Krista E.; Caccamo, Nadia; Guggino, Giuliana; Klein, Michel R.; van Weeren, Pascale; Kazi, Fatima; Stryhn, Anette; Zaigler, Alexander; Sahin, Ugur; Buus, Søren; Dieli, Francesco; Lund, Ole; Ottenhoff, Tom H. M.

    In: Journal of Immunology, Vol. 186, No. 2, 2011, p. 1068-1080.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  52. Published

    Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength.. / Lund, Ole; Nascimento, Eduardo J. M.; Maciel, Milton, Jr; Nielsen, Morten; Larsen, Mette Voldby; Lundegaard, Claus; Harndahl, Mikkel; Lamberth, Kasper; Buus, Søren; Salmon, Jérôme; August, Thomas J.; Marques, Ernesto T A, Jr.

    In: P L o S One, Vol. 6, No. 10, 2011, p. e26494.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  53. Published

    Identification of MHC class II restricted T‐cell‐mediated reactivity against MHC class I binding Mycobacterium tuberculosis peptides. / Wang, Mingjun; Tang, Sheila Tuyet; Stryhn, Anette; Justesen, Sune; Larsen, Mette Voldby; Dziegiel, Morten H.; Lewinsohn, David M.; Buus, Søren; Lund, Ole; Claesson, Mogens H.

    In: Immunology, Vol. 132, No. 4, 2011, p. 482-491.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  54. Published

    Immune system simulation online. / Rapin, Nicolas; Lund, Ole; Castiglione, Filippo.

    In: Bioinformatics, Vol. 27, No. 14, 2011, p. 2013-2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  55. Published

    Interdisciplinary Evaluation of Broadly-Reactive HLA Class II Restricted Epitopes Eliciting HIV-Specific CD4+T Cell Responses : Abstract of poster presentation. / Buggert, M.; Norström, M.; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, A. C.

    In: AIDS RESEARCH AND HUMAN RETROVIRUSES, Vol. 27, No. 10, 2011, p. A88-A88.

    Publication: Research - peer-reviewConference article – Annual report year: 2011

  56. Published

    Machine learning competition in immunology – Prediction of HLA class I binding peptides. / Zhang, Guang Lan; Ansari, Hifzur Rahman; Bradley, Phil; Cawley, Gavin C.; Hertz, Tomer; Hu, Xihao; Jojic, Nebojsa; Kim, Yohan; Kohlbacher, Oliver; Lund, Ole; Lundegaard, Claus; Magaret, Craig A.; Nielsen, Morten; Papadopoulos, Harris; Raghava, G.P.S.; Tal, Vider-Shalit; Xue, Li C.; Yanover, Chen; Zhu, Shanfeng; Rock, Michael T.; Crowe, James E.; Panayiotou, Christos; Polycarpou, Marios M.; Duch, Włodzisław; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 374, No. 1-2, 2011, p. 1-4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  57. Published

    MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles. / Zhang, Guang Lan; DeLuca, David S.; Keskin, Derin B.; Chitkushev, Lou; Zlateva, Tanya; Lund, Ole; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 374, No. 1-2, 2011, p. 53-61.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  58. Published

    NNAlign: A Web-Based Prediction Method Allowing Non-Expert End-User Discovery of Sequence Motifs in Quantitative Peptide Data. / Andreatta, Massimo; Schafer-Nielsen, Claus; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 6, No. 11, 2011, p. e26781.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  59. Published

    Porcine major histocompatibility complex (MHC) class I molecules and analysis of their peptide-binding specificities. / Pedersen, Lasse Eggers; Harndahl, Mikkel; Rasmussen, Michael; Lamberth, Kasper; Golde, William T.; Lund, Ole; Nielsen, Morten; Buus, Soren.

    In: Immunogenetics, Vol. 63, No. 12, 2011, p. 821-834.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  60. Published

    Prediction of epitopes using neural network based methods. / Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Journal of Immunological Methods, Vol. 374, No. 1-2, 2011, p. 26-34.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  61. 2010
  62. Published

    Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System. / Rapin, N.; Lund, Ole; Bernaschi, M.; Castiglione, F.

    In: P L o S One, Vol. 5, No. 4, 2010.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  63. Published

    CPHmodels-3.0--remote homology modeling using structure-guided sequence profiles. / Nielsen, Morten; Lundegaard, Claus; Lund, Ole; Petersen, Thomas Nordahl.

    In: Nucleic Acids Research, Vol. 38, 2010, p. W576-W581.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  64. Published
  65. Published

    HLA Class I Binding 9mer Peptides from Influenza A Virus Induce CD4(+) T Cell Responses. / Wang, M. J.; Larsen, Mette Voldby; Nielsen, Morten; Harndahl, M.; Justesen, S.; Dziegiel, M.H.; Buus, S.; Tang, Sheila Tuyet; Lund, Ole; Claesson, M.H.

    In: P L o S One, Vol. 5, No. 5, 2010, p. e10533.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  66. Published

    Identification of CD8(+) T Cell Epitopes in the West Nile Virus Polyprotein by Reverse-Immunology Using NetCTL. / Larsen, Mette Voldby; Lelic, A.; Parsons, R.; Nielsen, Morten; Hoof, I.; Lamberth, K.; Loeb, M.B.; Buus, S.; Bramson, J.; Lund, Ole.

    In: P L o S One, Vol. 5, No. 9, 2010.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  67. Published

    ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale. / Halling-Brown, M.; Pappalardo, F.; Rapin, Nicolas; Zhang, P.; Alemani, D.; Emerson, A.; Castiglione, F.; Duroux, P.; Pennisi, M.; Miotto, O.; Churchill, D.; Rossi, E.; Moss, D.S.; Sansom, C.E.; Bernaschi, M.; Lefranc, M.P.; Brunak, Søren; Lund, Ole; Motta, S.; Lollini, P.L.; Murgo, A.; Palladini, A.; Basford, K.E.; Brusic, V.; Shepherd, A.J.

    In: Royal Society of London. Philosophical Transactions. Mathematical, Physical and Engineering Sciences, Vol. 368, No. 1920, 2010, p. 2799-2815.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  68. Published

    Insight into Antigenic Diversity of VAR2CSA-DBL5 epsilon Domain from Multiple Plasmodium falciparum Placental Isolates. / Gnidehou, Sedami; Jessen, Leon Ivar; Gangnard, Stephane; Ermont, Caroline; Triqui, CHoukri; Quiviger, Mickael; Guitard, Juliette; Lund, Ole; Deloron, Philippe; Ndam, Nicaise Tuikue.

    In: P L o S One, Vol. 5, No. 10, 2010, p. e13105.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  69. Published

    In Silico Prediction of Human Pathogenicity in the gamma-Proteobacteria. / Andreatta, Massimo; Nielsen, Morten; Aarestrup, Frank Møller; Lund, Ole.

    In: P L o S One, Vol. 5, No. 10, 2010.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  70. Published

    Interdisciplinary Analysis of HIV-Specific CD8(+) T Cell Responses against Variant Epitopes Reveals Restricted TCR Promiscuity. / Hoof, Ilka; Perez, C.L.; Buggert, M.; Gustafsson, R.K.L.; Nielsen, Morten; Lund, Ole; Karlsson, A.C.

    In: Journal of Immunology, Vol. 184, No. 9, 2010, p. 5383-5391.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  71. Published

    Limitations of Ab Initio Predictions of Peptide Binding to MHC Class II Molecules. / Zhang, Hao; Lund, Ole; Nielsen, Morten; Wang, P; Papangelopoulos, N; Xu, Y; Sette, A; Bourne, PE; Ponomarenko, J; Peters, B.

    In: P L o S One, Vol. 5, No. 2, 2010, p. e9272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  72. Published

    Major histocompatibility complex class I binding predictions as a tool in epitope discovery. / Lundegaard, Claus; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: Immunology, Vol. 130, No. 3, 2010, p. 309-318.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  73. Published

    MHC Class II epitope predictive algorithms. / Nielsen, Morten; Lund, Ole; Buus, S; Lundegaard, Claus.

    In: Immunology, Vol. 130, No. 3, 2010, p. 319-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  74. Published
  75. Published

    Peptide binding predictions for HLA DR, DP and DQ molecules. / Wang, P.; Sidney, J.; Kim, Y.; Sette, A.; Lund, Ole; Nielsen, Morten; Peters, B.

    In: B M C Bioinformatics, Vol. 568, No. 11, 2010.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  76. Published

    Plasmodium falciparum population dynamics in a cohort of pregnant women in Senegal. / Guitard, Juliette; Andersen, Pernille; Ermont, Caroline; Gnidehou, Sedami; Fievet, Nadine; Lund, Ole; Deloron, Philippe; Ndam, Nicaise Tuikue.

    In: Malaria Journal, Vol. 9, No. 165, 2010.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  77. Published

    State of the art and challenges in sequence based T-cell epitope prediction. / Lundegaard, Claus; Hoof, Ilka; Lund, Ole; Nielsen, Morten.

    In: Immunome Research, Vol. 3, No. 6, 2010, p. 21067545.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  78. Published
  79. 2009
  80. Published

    Degenerate Peptide Specificity of MHC Molecules and T cell Receptors in Immunodominance and Tolerance. / Pletscher-Frankild, Sune; Lundegaard, Claus (Supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2009.

    Publication: ResearchPh.D. thesis – Annual report year: 2009

  81. Published

    Bioinformatics and simulation of the immune system. / Rapin, Nicolas; Brunak, Søren (Supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2009.

    Publication: ResearchPh.D. thesis – Annual report year: 2009

  82. Published

    Prediction and analysis of MHC class I binding specificities beyond humans. / Hoof, Ilka; Lund, Ole (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2009.

    Publication: ResearchPh.D. thesis – Annual report year: 2009

  83. Published

    Genome - and HLA-Wide Scanning and Validation of Cytotoxic CD8+ T Cell Responses in Bacterial and Viral Pathogens. / Tang, Sheila Tuyet; Lundegaard, Claus (Supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2009.

    Publication: ResearchPh.D. thesis – Annual report year: 2009

  84. Published

    Full genome sequence of a Danish isolate of Mycobacterium avium subspecies paratuberculosis, strain Ejlskov2007. / Afzal, Mamuna; Abidi, Soad; Mikkelsen, Heidi; Tang, Sheila Tuyet; Lund, Ole; Nielsen, Morten; Lundegaard, Claus; Jungersen, Gregers; Ussery, David.

    2009. Poster session presented at 10th International Colloquium on Paratuberculosis, Minneapolis, MN, United States.

    Publication: ResearchPoster – Annual report year: 2009

  85. Published

    High-affinity human leucocyte antigen class I binding variola-derived peptides induce CD4(+) T cell responses more than 30 years post-vaccinia virus vaccination. / Wang, M.; Tang, Sheila Tuyet; Lund, Ole; Dziegiel, M. H.; Buus, S.; Claesson, M. H.

    In: Clinical and Experimental Immunology, Vol. 155, No. 3, 2009, p. 441-446.

    Publication: Research - peer-reviewJournal article – Annual report year: 2009

  86. Published

    In-Silico identification of peptides for the diagnostics of paratuberculosis.. / Tang, Sheila Tuyet; Lund, Ole; Jungersen, Gregers; Nielsen, Morten; Mikkelsen, Heidi; Lundegaard, Claus.

    2009. Poster session presented at 10th International Colloquium on Paratuberculosis, Minneapolis, MN, United States.

    Publication: ResearchPoster – Annual report year: 2009

  87. Published

    NetMHCpan, a method for MHC class I binding prediction beyond humans.. / Hoof, Ilka; Peters, B; Sidney, J; Pedersen, Lasse Eggers; Sette, A; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 61, No. 1, 2009, p. 1-13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2009

  88. Published

    New-generation vaccines : Combining immunology with oganic chemistry and bioinformatics in engineering challanges. / Heegaard, Peter M. H.; Lund, Ole.

    Engineering challenges: energy, climate change & health. Kgs.Lyngby : Technical University of Denmark, 2009. p. 210-221 (DTU research series).

    Publication: ResearchBook chapter – Annual report year: 2009

  89. Published

    NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction. / Nielsen, Morten; Lund, Ole.

    In: B M C Bioinformatics, Vol. 10, 2009, p. 296.

    Publication: Research - peer-reviewJournal article – Annual report year: 2009

  90. Published
  91. Published

    The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding. / Zhang, H.; Lund, Ole; Nielsen, M.

    In: Bioinformatics, Vol. 25, No. 10, 2009, p. 1293-1299.

    Publication: Research - peer-reviewJournal article – Annual report year: 2009

  92. 2008
  93. Published
  94. Published

    Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire. / Pletscher-Frankild, Sune; de Boer, Rob J.; Lund, Ole; Nielsen, Morten; Kesmir, Can.

    In: PLoS ONE, Vol. 3, No. 3, 2008, p. e1831.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  95. Published

    Broadly Immunogenic HLA Class I Supertype-Restricted Elite CTL Epitopes Recognized in a Diverse Population Infected with Different HIV-1 Subtypes. / Pérez, Carina L; Larsen, Mette Voldby; Gustafsson, Rasmus; Norström, Melissa M; Atlas, Ann; Nixon, Douglas F; Nielsen, Morten; Lund, Ole; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 180, No. 7, 2008, p. 5092-5100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  96. Published

    Epitope mapping and analysis of sequence variation in VAR2CSA DBL3X involved in P-falciparum placental sequestration. / Rask, Thomas Salhøj; Dahlback, Madeleine; Andersen, Pernille H.; Nielsen, Morten A.; Ndam, Nicaise T.; Resende, Mafalda; Turner, Louise; Deloron, Philippe; Hviid, Lars; Lund, Ole; Pedersen, Anders Gorm; Theander, Thor G.; Salanti, Ali.

    In: Infection Genetics and Evolution, Vol. 8, No. 4, 2008, p. S17-S18.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2008

  97. Published

    Humans with chimpanzee-like major histocompatibility complex-specificities control HIV-1 infection. / Hoof, Ilka; Kesmir, Can; Lund, Ole; Nielsen, Morten.

    In: AIDS, Vol. 22, No. 11, 2008, p. 1299-303.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  98. Published

    Immune epitope database analysis resource (IEDB-AR). / Zhang, Qing; Wang, Peng; Kim, Yohan; Andersen, Pernille; Beaver, John; Bourne, Philip; Bui, Huynh-Hoa; Buus, Søren; Pletscher-Frankild, Sune; Greenbaum, Jason; Lund, Ole; Lundegaard, Claus; Nielsen, Morten; Ponomarenko, Julia; Sette, Alessandro; Zhu, Zhanyang; Peters, Bjoern.

    In: Nucleic Acids Research, Vol. W36, 2008, p. W513-W518.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  99. Published

    MHC-I-restricted epitopes conserved among variola and other related orthopoxviruses are recognized by T cells 30 years after vaccination. / Tang, Sheila Tuyet; Wang, M.; Lamberth, K.; Harndahl, M.; Dziegiel, M.H.; Claesson, M.H.; Buus, Søren; Lund, Ole.

    In: Archives of Virology, Vol. 153, No. 10, 2008, p. 1833-1844.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  100. Published

    MHC motif viewer. / Rapin, Nicolas Philippe Jean-Pierre; Hoof, Ilka; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 60, No. 12, 2008, p. 759-765.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  101. Published

    NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. / Lundegaard, Claus; Lamberth, K; Harndahl, M; Buus, Søren; Lund, Ole; Nielsen, Morten.

    In: Nucleic Acids Research, Vol. 36, 2008, p. W509-W512.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  102. Published

    Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan. / Nielsen, Morten; Lundegaard, Claus; Blicher, Thomas; Peters, B; Sette, A; Justesen, S; Buus, S; Lund, Ole.

    In: PloS Computational Biology, Vol. 4, No. 7, 2008, p. e1000107.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  103. Published

    Structural Insight into Epitopes in the Pregnancy-Associated Malaria Protein VAR2CSA. / Andersen, P; Nielsen, MA; Resende, M; Rask, Thomas Salhøj; Dahlbäck, M; Theander, T; Lund, Ole; Salanti, A.

    In: P L o S Pathogens, Vol. 4, No. 2, 2008, p. 42.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  104. Published

    The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype. / Lamberth, K; Røder, G; Harndahl, M; Nielsen, Morten; Lundegaard, Claus; Schafer-Nielsen, C; Lund, Ole; Buus, Søren.

    In: Immunogenetics, Vol. 60, No. 11, 2008, p. 633-643.

    Publication: Research - peer-reviewJournal article – Annual report year: 2008

  105. 2007
  106. Published

    Prediction and identification of B-cell epitopes using protein structure information. / Andersen, Pernille; Lund, Ole (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2007.

    Publication: ResearchPh.D. thesis – Annual report year: 2007

  107. Published
  108. Published
  109. Published

    CTL epitopes for influenza A including the H5N1 bird flu; genome-, pathogen-, and HLA-wide screening. / Wang, M.J.; Lamberth, K.; Harndahl, M.; Roder, G.; Stryhn, A.; Larsen, Mette Voldby; Nielsen, Morten; Lundegaard, Claus; Tang, Sheila Tuyet; Dziegiel, M.H.; Rosenkvist, J.; Pedersen, A.E.; Buus, Søren; Claesson, M.H.; Lund, Ole.

    In: Vaccine, Vol. 25, No. 15, 2007, p. 2823-2831.

    Publication: Research - peer-reviewJournal article – Annual report year: 2007

  110. Published

    Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. / Larsen, Mette Voldby; Lundegaard, Claus; Lamberth, K.; Buus, S.; Lund, Ole; Nielsen, Morten.

    In: BMC Bioinformatics, Vol. 8, 2007, p. 424.

    Publication: Research - peer-reviewJournal article – Annual report year: 2007

  111. Published

    Modeling the adaptive immune system: predictions and simulations. Bioinformatics.. / Lundegaard, Claus; Lund, Ole; Kesmir, Can; Brunak, Søren; Nielsen, Morten.

    In: Bioinformatics, No. 23, 2007, p. 3265-75.

    Publication: Research - peer-reviewJournal article – Annual report year: 2007

  112. Published

    NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence. / Nielsen, Morten; Lundegaard, Claus; Blicher, Thomas; Lamberth, K.; Harndahl, M.; Justesen, S.; Roder, G.; Peters, B.; Sette, A.; Lund, Ole; Buus, S.

    In: PLoS ONE, No. 8, 2007, p. e796.

    Publication: Research - peer-reviewJournal article – Annual report year: 2007

  113. Published

    Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. / Nielsen, Morten; Lundegaard, Claus; Lund, Ole.

    In: BMC Bioinformatics, Vol. 8, 2007, p. 238.

    Publication: Research - peer-reviewJournal article – Annual report year: 2007

  114. Published

    Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools. / Greenbaum, Jason A.; Andersen, Pernille; Blythe, Martin; Bui, Huynh-Hoa; Cachau, Raul E.; Crowe, James; Davies, Matthew; Kolaskar, A. S.; Lund, Ole; Morrison, Sherrie; Mumey, Brendan; Ofran, Yanay; Pellequer, Jean-Luc; Pinilla, Clemencia; Ponomarenko, Julia V.; Raghava, G. P. S.; van Regenmortel, Marc H.; Roggen, Erwin L.; Sette, Alessandro; Schlessinger, Avner; Sollner, Johannes; Zand, Martin; Peters, Bjoern.

    In: Journal of molecular recognition, No. 2, 2007, p. 75-82.

    Publication: Research - peer-reviewJournal article – Annual report year: 2007

  115. 2006
  116. Published

    A community resource benchmarking predictions of peptide binding to MHC-I molecules. / Peters, B; Bui, HH; Pletscher-Frankild, Sune; Nielsen, Morten; Lundegaard, Claus; Kostem, E; Basch, D; Lamberth, K; Harndahl, M; Fleri, W; Wilson, SS; Sidney, J; Lund, Ole; Buus, S; Sette, Alessandro.

    In: PloS Computational Biology, Vol. 2, No. 6, 2006, p. 574-584.

    Publication: Research - peer-reviewJournal article – Annual report year: 2006

  117. Published

    Epitope mapping and topographic analysis of VAR2CSA DBL3X involved in P-falciparum placental sequestration. / Dahlback, Madeleine; Rask, Thomas Salhøj; Andersen, Pernille; Nielsen, Morten A; Ndam, Nicaise T.; Resende, Mafalda; Turner, Louise; Deloron, Philippe; Hviid, Lars; Lund, Ole; Pedersen, Anders Gorm; Theander, Thor G.; Salanti, Ali.

    In: PLoS Pathogens, Vol. 2, No. 11, 2006, p. 1069-1082.

    Publication: Research - peer-reviewJournal article – Annual report year: 2006

  118. Published

    Improved method for predicting linear B-cell epitopes. / Larsen, Jens Erik Pontoppidan; Lund, Ole; Nielsen, Morten.

    In: Immunome Research, Vol. 2, 2006, p. 2.

    Publication: ResearchJournal article – Annual report year: 2006

  119. Published
  120. Published

    Prediction of residues in discontinuous B-cell epitopes using protein 3D structures. / Andersen, P.H.; Nielsen, Morten; Lund, Ole.

    In: Protein Science, Vol. 15, No. 11, 2006, p. 2558-2567.

    Publication: Research - peer-reviewJournal article – Annual report year: 2006

  121. Published

    TAP-independent MHC class I presentation.. / Larsen, Mette Voldby; Nielsen, Morten; Weinzierl, A; Lund, Ole.

    In: Current Immunology Reviews, Vol. 2, No. 3, 2006, p. 233-245.

    Publication: Research - peer-reviewJournal article – Annual report year: 2006

  122. Published

    The validity of predicted T-cell epitopes. / Lundegaard, Claus; Nielsen, Morten; Lund, Ole.

    In: Trends in Biotechnology, Vol. 24, No. 12, 2006, p. 537-538.

    Publication: Research - peer-reviewJournal article – Annual report year: 2006

  123. 2005
  124. Published
  125. Published

    The design and implementation of the immune epitope database and analysis resource. / Peters, B.; Sidney, J.; Bourne, P.; Bui, H.H.; Buus, S.; Doh, G.; Fleri, W.; Kronenberg, M.; Kubo, R.; Lund, Ole; Nemazee, D.; Ponomarenko, J.V.; Sathiamurthy, M.; Schoenberger, S.P.; Stewart, S.; Surko, P.; Way, S.; Wilson, S.; Sette, A.

    In: Immunogenetics, Vol. 57, No. 5, 2005, p. 326-336.

    Publication: Research - peer-reviewJournal article – Annual report year: 2005

  126. Published

    The Immune Epitope Database and Analysis Resource: From Vision to Blueprint. / Peters, B.; Sidney, J.; Bourne, P.; Bui, H. H.; Buus, S.; Doh, G.; Fleri, W.; Kronenberg, M.; Kubo, R.; Lund, Ole; Nemazee, D.; Ponomarenko, J. V.; Sathiamurthy, M.; Schoenberger, S.; Stewart, S.; Surko, P.; Way, S.; Wilson, S.; Sette, A.

    In: PLoS - Biology, Vol. 3, No. 3, 2005, p. 379-381.

    Publication: Research - peer-reviewJournal article – Annual report year: 2005

  127. Published
  128. 2004
  129. Published

    Coronavirus 3CL(pro) proteinase cleavage sites: Possible relevance to SARS virus pathology. / Kiemer, Lars; Lund, Ole; Brunak, Søren; Blom, Nikolaj.

    In: BMC Bioinformatics, Vol. 5, 2004, p. 72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2004

  130. Published

    Definition of supertypes for HLA molecules using clustering of specificity matrices. / Lund, Ole; Nielsen, Morten; Kesmir, Can; Pedersen, Anders Gorm; Lundegaard, Claus; Worning, Peder; Sylvester-Hvid, C.; Lamberth, K.; Roder, G.; Justesen, S.; Buus, S.; Brunak, Søren.

    In: Immunogenetics, Vol. 55, No. 12, 2004, p. 797-810.

    Publication: Research - peer-reviewJournal article – Annual report year: 2004

  131. Published

    Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. / Nielsen, Morten; Lundegaard, Claus; Worning, Peder; Hvid, C.S.; Lamberth, K.; Buus, S.; Brunak, Søren; Lund, Ole.

    In: Bioinformatics, Vol. 20, 2004, p. 1388-1397.

    Publication: Research - peer-reviewJournal article – Annual report year: 2004

  132. Published
  133. Published

    SARS CTL vaccine candidates; HLA supertype-, genome-wide scanning and biochemical validation. / Sylvester-Hvid, C.; Nielsen, Morten; Lamberth, K.; Roder, G.; Lundegaard, Claus; Worning, Peder; Thomadsen, H.; Lund, Ole; Brunak, Søren; Buus, S.

    In: Tissue Antigens, Vol. 63, No. 5, 2004, p. 295-400.

    Publication: Research - peer-reviewJournal article – Annual report year: 2004

  134. 2003
  135. Published

    Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. / Nielsen, Morten; Lundegaard, Claus; Worning, Peder; Lauemoller, S.L.; Lamberth, K.; Buus, S.; Brunak, Søren; Lund, Ole.

    In: Protein Science, Vol. 12, No. 5, 2003, p. 1007-1017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2003

  136. Published

    Selecting informative data for developing peptide-MHC binding predictors using a query by committee approach. / Christensen, J.K.; Lamberth, K.; Nielsen, Morten; Lundegaard, Claus; Worning, Peder; Lauemoller, S.L.; Buus, S.; Brunak, Søren; Lund, Ole.

    In: Neural Computation, Vol. 15, No. 12, 2003, p. 2931-2942.

    Publication: Research - peer-reviewJournal article – Annual report year: 2003

  137. 2002
  138. Published

    Web-based Tools for Vaccine Design. / Lund, Ole; Nielsen, Morten; Kesmir, Can; Christensen, Jens K.; Lundegaard, Claus; Worning, Peder; Brunak, Søren.

    HIV molecular immunology 2002. Theoretical Biology & Biophysics, 2002. p. 45-51.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2002

  139. 2000
  140. Published

    Prediction of protein secondary structure at 80% accuracy. / Petersen, T. N.; Lundegaard, C.; Nielsen, M.; Bohr, Henrik; Bohr, Jakob; Brunak, Søren; Gippert, G. P.; Lund, Ole.

    In: Proteins - Structure Function and Bioinformatics, Vol. 41, No. 1, 2000, p. 17-20.

    Publication: Research - peer-reviewJournal article – Annual report year: 2000

  141. 1998
  142. Published

    O-GLYCBASE version 3.0: a revised database of O-glycosylated proteins. / Hansen, Jan; Lund, Ole; Nilsson, Jette; Rapacki, Kristoffer; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 26, No. 1, 1998, p. 387-389.

    Publication: Research - peer-reviewJournal article – Annual report year: 1998

  143. 1997
  144. Published

    O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins. / Hansen, Jan; Lund, Ole; Rapacki, Kristoffer; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 25, No. 1, 1997, p. 278-282.

    Publication: Research - peer-reviewJournal article – Annual report year: 1997

  145. Published
  146. 1996
  147. Published

    Distance distributions in proteins: a six parameter representation. / Reese, M.G.; Lund, Ole; Bohr, Jakob; Bohr, Henrik; Hansen, Jan; Brunak, Søren.

    In: Protein Engineering, Vol. 9, No. 9, 1996, p. 733-740.

    Publication: Research - peer-reviewJournal article – Annual report year: 1996

  148. Published

    O-GLYCBASE: a revised database of O-glycosylated proteins. / Hansen, Jan; Lund, Ole; Nielsen, Jens O.; Hansen, John-E. S.; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 24, No. 1, 1996, p. 248-252.

    Publication: Research - peer-reviewJournal article – Annual report year: 1996

  149. Published

    Prediction of the Secondary Structure of HIV-1 gp120. / Hansen, Jan; Lund, Ole; Nielsen, Jens O.; Brunak, Søren; Hansen, John-E.S.

    In: Proteins: Structure, Function, and Bioinformatics, Vol. 25, No. 1, 1996, p. 1-11.

    Publication: Research - peer-reviewJournal article – Annual report year: 1996

  150. Published

    Relationship between protein structure and geometrical constrains. / Lund, Ole; Hansen, Jan; Brunak, Søren; Bohr, Jakob.

    In: Protein Science, Vol. 5, 1996, p. 2217-2225.

    Publication: Research - peer-reviewJournal article – Annual report year: 1996

  151. Published

    Relationship between protein structure and geometrical constraints. / Lund, Ole; Hansen, Jan; Brunak, Søren; Bohr, Jakob.

    In: Protein Science, Vol. 5, No. 11, 1996, p. 2217-2225.

    Publication: Research - peer-reviewJournal article – Annual report year: 1996

  152. 1994
  153. Published

    Glycosylation and protein conformation : Protein structure by distance analysis. / Hansen, Jan E.; Lund, Ole; Rapacki, Khristoffer; Mosekilde, Erik; Nielsen, Jens O.; Hansen, John-Erik S.

    Protein Structure by Distance Analysis. IOS PressVan Diemenstraat 94, 1013 CN Amsterdam, Netherlands, 1994. p. 247-254.

    Publication: Research - peer-reviewBook chapter – Annual report year: 1994

Download list:
Download as PDF
Select render style:
APAAuthorCBEHarvardMLAStandardVancouverShortLong
PDF
Download as HTML
Select render style:
APAAuthorCBEHarvardMLAStandardVancouverShortLong
HTML
Download as Word
Select render style:
APAAuthorCBEHarvardMLAStandardVancouverShortLong
Word