Ole Lund

  1. 2016
  2. Published

    Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania. / Sonda, Tolbert; Kumburu, Happiness; Zwetselaar, Marco van; Ahrenfeldt, Johanne; Alifrangis, Michael; Lund, Ole; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Infection Control & Hospital Epidemiology, Vol. 37, No. 5, 2016, p. 622-623.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2016

  3. Published

    ChemProt-3.0: a global chemical biology diseases mapping. / Kringelum, Jens Vindahl; Kjærulff, Sonny Kim; Brunak, Søren; Lund, Ole; Oprea, Tudor I.; Taboureau, Olivier .

    In: Database, Vol. 2016, bav123, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104. / Leekitcharoenphon, Pimlapas; Hendriksen, Rene S.; Le Hello, Simon; Weill, François-Xavier; Baggesen, Dorte Lau; Jun, Se-Ran; Ussery, David; Lund, Ole; Crook, Derrick W; Wilson, Daniel J; Aarestrup, Frank Møller.

    In: Applied and Environmental Microbiology, Vol. 82, No. 8, 2016, p. 2516-2526.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. / Friis-Nielsen, Jens; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter; Willerslev, Eske; Sicheritz-Pontén, Thomas; Lund, Ole; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria; Brunak, Søren.

    In: Viruses, Vol. 8, No. 53, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing. / Mollerup, Sarah; Friis-Nielsen, Jens; Vinner, Lasse; Richter, Stine Raith; Fridholm, Helena; Herrera, Jose Romero; Lund, Ole; Brunak, Søren; Gonzalez-Izarzugaza, Jose Maria; Mourier, Tobias; Nielsen, Lars Peter; Hansen, Anders Johannes.

    In: Journal of Clinical Microbiology, Vol. 54, No. 4, 2016, p. 980-987.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. 2015
  8. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  10. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. / Liu, Siyang; Huang, Shujia; Rao, Junhua; Ye, Weijian; Schierup, Mikkel H.; Villesen, Palle ; Xu, Xun; Li, Ning; Kristiansen, Karsten; Sørensen, Thorkild I. A.; Hansen, Torben; Pedersen, Oluf; Brunak, Søren; Gupta, Ramneek; Rasmussen, Simon; Lund, Ole; Bolund, Lars; Børglum, Anders D.; Eiberg, Hans; Nørgaard Flindt, Esben; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Jiang, Hui; Wang, Ou ; Cheng, Xiaofang ; Demontis, Ditte ; Besenbacher, Søren; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Liu, Siyang; Chang, Yuqi; Li, Shengting; Guo, Xiaosen; Cao, Hongzhi; Ye, Chen; Maretty, Lasse; Andreas Sibbesen, Jonas; Albrechtsen, Anders; Bork-Jensen, Jette; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Belling, Kirstine González-Izarzugaza; Yadav, Rachita; Grove, Jakob; Dam-Als, Thomas; Lescai, Francesco; Krogh, Anders; Wang, Jun.

    In: GigaScience, Vol. 4, No. 64, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Ebolavirus comparative genomics. / Jun, Se-Ran; Leuze, Michael R.; Nookaew, Intawat; Uberbacher, Edward C.; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; Lund, Ole; Buzard, Gregory S.; Pedersen, Thomas Dybdal; Wassenaar, Trudy M.; Ussery, David W.

    In: F E M S Microbiology Reviews, Vol. 479, No. 1, fuv031, 2015, p. 764-778.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. Published

    Genomic Epidemiology. / Lund, Ole; Thomsen, Martin; Bellod Cisneros, Jose Luis; Ahrenfeldt, Johanne; Tetzschner, Anna Maria Malberg; Leekitcharoenphon, Shinny; Kaas, Rolf Sommer; Lukjancenko, Oksana; Aarestrup, Frank.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. Q-7.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  13. Published

    High-throughput epitope identification for snakebite antivenom. / Engmark, Mikael; De Masi, Federico; Laustsen, Andreas Hougaard; Gutiérrez, José María; Lomonte, Bruno; Andersen, Mikael Rørdam; Lund, Ole.

    2015. Poster session presented at The International Sustainability Conference 2015, Falmer, Brighton, United Kingdom.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  14. Published
  15. Published

    Insights from 20 years of bacterial genome sequencing. / Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole; Kora, Guruprased; Wassenaar, Trudy; Poudel, Suresh; Ussery, David.

    In: Functional & Integrative Genomics, Vol. 15, No. 2, 2015, p. 141-161.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  16. Published
  17. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Molecular Immunology, Vol. 68, No. 2, Part A, 2015, p. 134-134.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  18. Published

    Multidimensional Clusters of CD4+T Cell Dysfunction Are Primarily Associated with the CD4/CD8 Ratio in Chronic HIV Infection. / Frederiksen, Juliet Wairimu; Buggert, Marcus; Noyan, Kajsa; Nowak, Piotr; Sönnerborg, Anders; Lund, Ole; Karlsson, Annika C.

    In: P L o S One, Vol. 10, No. 9, e0137635, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Gonzalez-Izarzugaza, Jose Maria; Grove, Jakob; Belling, Kirstine C.; Bork-Jensen, Jette; Huang, Shujia; Dam-Als, Thomas; Li, Shengting; Yadav, Rachita; Yadav, Rachita; Rubio García, Arcadio; Lescai, Francesco; Demontis, Ditte ; Rao, Junhua ; Ye, Weijian ; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Wang, Ou ; Cheng, Xiaofang ; Flores Santa Cruz, David; Rydza, Emil Karol; Rapacki, Kristoffer; Sørensen, John Damm; Chmura, Piotr Jaroslaw; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I. A.; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D.; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Jun, Wang; Gupta, Ramneek; Villesen, Palle ; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published
  21. Published

    Ultra-high density peptide arrays demonstrate unique patient-specific IgE and IgG4 epitope patterns for peanut allergens that persist over multiple years. / Christiansen, A.; Hansen, Christian Skjødt; Eiwegger, T.; Sullivan, E.; Patel, J.; Kringelum, Jens Vindahl; Lund, Ole; Szepfalusi, Z.; Bøgh, Katrine Lindholm; Dufva, Martin.

    In: Allergy, Vol. 70, No. Suppl. 101, 183, 2015, p. 90-90.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  22. Published

    What Can We Learn from a Metagenomic Analysis of a Georgian Bacteriophage Cocktail?. / Zschach, Henrike; Joensen, Katrine Grimstrup; Lindhard, Barbara; Lund, Ole; Goderdzishvili, Marina; Chkonia, Irina; Jgenti, Guliko; Kvatadze, Nino; Alavidze, Zemphira; Kutter, Elizabeth M; Hasman, Henrik; Larsen, Mette Voldby.

    In: Viruses, Vol. 7, No. 12, 2015, p. 6570-6589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. 2014
  24. Published
  25. Published
  26. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  27. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  28. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

Previous 1 2 3 4 5 6 7 Next
Download list:
Download as PDF
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
PDF
Download as HTML
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
HTML
Download as Word
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
Word