Ole Lund
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Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. / Lundegaard, Claus; Lund, Ole; Nielsen, Morten.
In: Bioinformatics, Vol. 24, No. 11, 2008, p. 1397-1398.Publication: Research - peer-review › Journal article – Annual report year: 2008
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A community resource benchmarking predictions of peptide binding to MHC-I molecules. / Peters, B; Bui, HH; Pletscher-Frankild, Sune; Nielsen, Morten; Lundegaard, Claus; Kostem, E; Basch, D; Lamberth, K; Harndahl, M; Fleri, W; Wilson, SS; Sidney, J; Lund, Ole; Buus, S; Sette, Alessandro.
In: PloS Computational Biology, Vol. 2, No. 6, 2006, p. 574-584.Publication: Research - peer-review › Journal article – Annual report year: 2006
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Amino acid similarity accounts for T cell cross-reactivity and for "holes" in the T cell repertoire. / Pletscher-Frankild, Sune; de Boer, Rob J.; Lund, Ole; Nielsen, Morten; Kesmir, Can.
In: PLoS ONE, Vol. 3, No. 3, 2008, p. e1831.Publication: Research - peer-review › Journal article – Annual report year: 2008
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An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. / Rasmussen, Morten; Guo, Xiaosen; Wang, Yong; Lohmueller, Kirk E.; Rasmussen, Simon; Albrechtsen, Anders; Skotte, Line; Lindgreen, Stinus; Metspalu, Mait; Jombart, Thibaut; Kivisild, Toomas; Zhai, Weiwei; Eriksson, Anders; Manica, Andrea; Orlando, Ludovic; De La Vega, Francisco M.; Tridico, Silvana; Metspalu, Ene; Nielsen, Kasper; Ávila-Arcos, María C.; Moreno-Mayar, J. Víctor; Muller, Craig; Dortch, Joe; Gilbert, M. Thomas P.; Lund, Ole; Wesolowska, Agata; Karmin, Monika; Weinert, Lucy A.; Wang, Bo; Li, Jun; Tai, Shuaishuai; Xiao, Fei; Hanihara, Tsunehiko; van Driem, George; Jha, Aashish R.; Ricaut, François-Xavier; de Knijff, Peter; Migliano, Andrea B; Gallego Romero, Irene; Kristiansen, Karsten; Lambert, David M.; Brunak, Søren; Forster, Peter; Brinkmann, Bernd; Nehlich, Olaf; Bunce, Michael; Richards, Michael; Gupta, Ramneek; Bustamante, Carlos D.; Krogh, Anders; Foley, Robert A.; Lahr, Marta M.; Balloux, Francois; Sicheritz-Pontén, Thomas; Villems, Richard; Nielsen, Rasmus; Wang, Jun; Willerslev, Eske.
In: Science, Vol. 334, No. 6052, 2011, p. 94-98.Publication: Research - peer-review › Journal article – Annual report year: 2011
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An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions. / Larsen, M V; Lundegaard, Claus; Lamberth, K; Buus, S; Brunak, Søren; Lund, Ole; Nielsen, Morten.
In: European Journal of Immunology, Vol. 35, No. 8, 2005, p. 2295-2303.Publication: Research - peer-review › Journal article – Annual report year: 2005
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Bioinformatics and simulation of the immune system. / Rapin, Nicolas; Brunak, Søren (Supervisor); Lund, Ole (Supervisor).
Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2009.Publication: Research › Ph.d. thesis – Annual report year: 2009
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Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.
In: Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).Publication: Research - peer-review › Book chapter – Annual report year: 2013
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Bistability in autoimmune diseases. / Rapin, Nicolas; Mosekilde, Erik; Lund, Ole.
In: Autoimmunity, Vol. 44, No. 4, 2011, p. 256-260.Publication: Research - peer-review › Journal article – Annual report year: 2011
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Broadly Immunogenic HLA Class I Supertype-Restricted Elite CTL Epitopes Recognized in a Diverse Population Infected with Different HIV-1 Subtypes. / Pérez, Carina L; Larsen, Mette Voldby; Gustafsson, Rasmus; Norström, Melissa M; Atlas, Ann; Nixon, Douglas F; Nielsen, Morten; Lund, Ole; Karlsson, Annika C.
In: Journal of Immunology, Vol. 180, No. 7, 2008, p. 5092-5100.Publication: Research - peer-review › Journal article – Annual report year: 2008
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Characterization of HIV-Specific CD4+T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage. / Buggert, Marcus; Norstrom, Melissa M.; Czarnecki, Chris; Tupin, Emmanuel; Luo, Ma; Gyllensten, Katarina; Sonnerborg, Anders; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, Annika C.
In: P L o S One, Vol. 7, No. 7, 2012.Publication: Research - peer-review › Journal article – Annual report year: 2012