Morten Nielsen

  1. 2016
  2. Published

    A combined prediction strategy increases identification of peptides bound with high affinity and stability to porcine MHC class I molecules SLA-1*04:01, SLA-2*04:01, and SLA-3*04:01. / Pedersen, Lasse Eggers; Rasmussen, Michael; Harndahl, Mikkel; Nielsen, Morten; Buus, Søren; Jungersen, Gregers.

    In: Immunogenetics, Vol. 68, No. 2, 2016, p. 157-165.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells. / Ternette, Nicola; Yang, Hongbing; Partridge, Thomas; Llano, Anuska; Cedeño, Samandhy; Fischer, Roman; Charles, Philip D.; Dudek, Nadine L.; Mothe, Beatriz; Crespo, Manuel; Fischer, William M.; Korber, Bette T. M.; Nielsen, Morten; Borrow, Persephone; Purcell, Anthony W.; Brander, Christian; Dorrell, Lucy; Kessler, Benedikt M.; Hanke, Tomáš.

    In: European Journal of Immunology, Vol. 46, No. 1, 2016, p. 60-69.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Gapped sequence alignment using artificial neural networks: application to the MHC class I system. / Andreatta, Massimo; Nielsen, Morten.

    In: Bioinformatics, Vol. 32, No. 4, btv639, 2016, p. 511-517.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    HostPhinder: A Phage Host Prediction Tool. / Villarroel, Julia; Kleinheinz, Kortine Annina; Jurtz, Vanessa Isabell; Zschach, Henrike; Lund, Ole; Nielsen, Morten; Larsen, Mette Voldby.

    In: Viruses, Vol. 8, No. 5, 116, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Immunogenicity of HLA Class I and II Double Restricted Influenza A-Derived Peptides. / Pedersen, Sara Ram; Christensen, Jan Pravsgaard; Buus, Søren; Rasmussen, Michael; Korsholm, Karen Smith; Nielsen, Morten; Claesson, Mogens Helweg.

    In: P L o S One, Vol. 11, No. 1, e0145629, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove. / McMurtrey, Curtis; Trolle, Thomas; Sansom, Tiffany; Remesh, Soumya G.; Kaever, Thomas; Bardet, Wilfried; Jackson, Kenneth; McLeod, Rima; Sette, Alessandro; Nielsen, Morten; Zajonc, Dirk M.; Blader, Ira J.; Peters, Bjoern; Hildebrand, William.

    In: eLife, Vol. 5, e12556, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets. / Nielsen, Morten; Andreatta, Massimo.

    In: Genome Medicine, Vol. 8, No. 1, 33, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Pan-specific prediction of peptide-MHC Class I complex stability, a correlate of T cell immunogenicity. / Rasmussen, Michael; Fenoy, Emilio; Harndahl, Mikkel; Kristensen, Anne Bregnballe; Nielsen, Ida Kallehauge; Nielsen, Morten; Buus, Søren.

    In: Journal of Immunology, Vol. 197, No. 4, 2016, p. 1517-1524.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Sequence diversity between class I MHC loci of African native and introduced Bos taurus cattle in Theileria parva endemic regions : in silico peptide binding prediction identifies distinct functional clusters. / Obara, Isaiah; Nielsen, Morten; Jeschek, Marie; Nijhof, Ard; Mazzoni, Camila J.; Svitek, Nicholas; Steinaa, Lucilla; Awino, Elias; Olds, Cassandra; Jabbar, Ahmed; Clausen, Peter Henning; Bishop, Richard P.

    In: Immunogenetics, Vol. 68, No. 5, 2016, p. 339-352.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    T-cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome. / Bresciani, Anne Gøther; Paul, Sinu; Schommer, Nina; Dillon, Myles B.; Bancroft, Tara; Greenbaum, Jason; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: Immunology, Vol. 148, No. 1, 2016, p. 34-39.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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