Morten Nielsen

  1. 2017
  2. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  3. E-pub ahead of print

    Breaking confinement: unconventional peptide presentation by major histocompatibility (MHC) class I allele HLA-A*02:01. / Remesh, Soumya G.; Andreatta, Massimo; Ying, Ge; Kaever, Thomas; Nielsen, Morten; McMurtrey, Curtis P.; Hildebrand, William; Peters, Bjoern; Zajonc, Dirk M.

    In: Journal of Biological Chemistry, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  4. E-pub ahead of print

    MHC-I Ligand Discovery Using Targeted Database Searches of Mass Spectrometry Data: Implications for T-Cell Immunotherapies. / Murphy, J. Patrick; Konda, Prathyusha; Kowalewski, Daniel J.; Schuster, Heiko; Clements, Derek; Kim, Youra; Cohen, Alejandro M.; Sharif, Tanveer; Nielsen, Morten; Stevanovic, Stefan; Lee, Patrick W.; Gujar, Shashi.

    In: Journal of Proteome Research, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  5. Published

    MIToS.jl: mutual information tools for protein sequence analysis in the Julia language. / Zea, Diego J.; Anfossi, Diego; Nielsen, Morten; Marino-Buslje, Cristina.

    In: Bioinformatics, Vol. 33, No. 4, btw646, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. 2016
  7. Published

    A combined prediction strategy increases identification of peptides bound with high affinity and stability to porcine MHC class I molecules SLA-1*04:01, SLA-2*04:01, and SLA-3*04:01. / Pedersen, Lasse Eggers; Rasmussen, Michael; Harndahl, Mikkel; Nielsen, Morten; Buus, Søren; Jungersen, Gregers.

    In: Immunogenetics, Vol. 68, No. 2, 2016, p. 157-165.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published
  9. Published

    Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells. / Ternette, Nicola; Yang, Hongbing; Partridge, Thomas; Llano, Anuska; Cedeño, Samandhy; Fischer, Roman; Charles, Philip D.; Dudek, Nadine L.; Mothe, Beatriz; Crespo, Manuel; Fischer, William M.; Korber, Bette T. M.; Nielsen, Morten; Borrow, Persephone; Purcell, Anthony W.; Brander, Christian; Dorrell, Lucy; Kessler, Benedikt M.; Hanke, Tomáš.

    In: European Journal of Immunology, Vol. 46, No. 1, 2016, p. 60-69.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Engineering a CTL-Tailored Replicon RNA Vaccine against PRRSV. / Welner, Simon; Werder, Simea; Nielsen, Morten; Lund, Ole; Gerber, Markus; Liniger, Matthias; Ruggli, Nicolas; Summerfield, Artur; Larsen, Lars Erik; Jungersen, Gregers.

    2016. Abstract from 11th International Veterinary Immunology Symposium, Gold Coast, Australia.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

  11. Published

    Expanding specificity of class I restricted CD8+ T cells for viral epitopes following multiple inoculations of swine with a human adenovirus vectored foot-and-mouth disease virus (FMDV) vaccine. / Pedersen, Lasse E.; Patch, Jared R; Kenney, Mary; Glabman, Raisa A; Nielsen, Morten; Jungersen, Gregers; Buus, Søren; Golde, William T.

    In: Veterinary Immunology and Immunopathology, Vol. 181, 2016, p. 59-67.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  12. Published

    Gapped sequence alignment using artificial neural networks: application to the MHC class I system. / Andreatta, Massimo; Nielsen, Morten.

    In: Bioinformatics, Vol. 32, No. 4, btv639, 2016, p. 511-517.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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