Markus Herrgard

Markus Herrgard

Senior researcher

Kogle Alle 6, Building Thuja House, Room 2.L.01a

2970 Hørsholm

Denmark

Mobile: 24 92 17 80

iLoop Core

 

I'm the manager of the iLoop Core organization at the NNF Center for Biosustainability. The iLoop (Iterative Cell Factory Development Loop) Core works on translational projects related to microbial cell factory engineering. The core consists of five platforms led by independent group leaders: 

  1. Genome engineering - Dr. Jerome Maury
  2. Screening and fermentation - Dr. Konstantin Schneider
  3. Automation - Mr. Olivier Bitterlin
  4. Analytics - Dr. Scott Harrison
  5. Sequencing, informatics and modeling - Drs. Niko Sonnenschein and Markus Herrgard

Sequencing, Informatics and Modeling (SIM) Group

 

I'm also the group leader for Sequencing, Informatics and Modeling Group at the NNF Center for Biosustainability. Our group works on:

  1. Genome-scale modeling of biochemical networks
  2. Data-driven computational approaches to cell factory design
  3. Systems biology of microbial platform cell factories
  4. Next generation sequencing applied to cell factory development
  5. Software development to support cell factory development workflows

We collaborate extensively with other groups at the CFB DTU site as well as CFB satellite sections at University of California San Diego and Chalmers University.

 

My publications:  Complete list of publications in Google Scholar

My CV: LinkedIn profile

 

SIM staff:

 

Modeling team:

  • Niko Sonnenschein, research scientist, subgroup leader
  • Emre Özdemir, postdoc, metabolic modeling
  • Joao Cardoso, Ph.D. student
  • Marta Matos, Ph.D. student

Sequencing and informatics team:

  • Ida Bonde, postdoc, microbial bioinformatics
  • Anna Koza, postdoc, next generation sequencing
  • Lasse Ebdrup Pedersen, bioinformatics scientist, CHO bioinformatics

Software development team:

  • Lars Schöning, lead software engineer
  • Ju Goncalves, software engineer

Other affliated staff at CFB:

  • Rebecca Lennen, research scientist, project leader for platform strain development
  • Kai Zhuang, research scientist, multi-scale techno-economic modeling
  • Sumesh Sukumara, postdoc, multi-scale techno-economic modeling

CV

Education

1993 - 1998 M.Sc. - Aalto University, Finland
1999 - 2004 Ph.D. - University of California, San Diego

Academic grades

Ph.D.

Professional experience

2004 - 2006 Post-doctoral researcher - University of California, San Diego, Bioengineering
2006 - 2008 Project Scientist - University of California, San Diego, Bioengineering
2008 - 2012 Senior Scientist - Synthetic Genomics, Inc.
2012 - Group leader - DTU, Biosustain
2014 - iLoop Core Manager - DTU, Biosustain
View graph of relations

View all »

View all »

  • Frontiers in Microbiology

    ISSNs: 1664-302X

    Frontiers Research Foundation, Switzerland

    ISI indexed (2013): no, FI (2013): 1

    Central database

    Journal

  • B M C Systems Biology

    ISSNs: 1752-0509, 17520509

    BioMed Central Ltd., United Kingdom

    ISI indexed (2013): yes, FI (2013): 1

    Central database

    Journal

  • P L o S One

    ISSNs: 1932-6203, 19326203

    Public Library of Science, United States

    ISI indexed (2013): yes, FI (2013): 1

    Central database

    Journal

View all »

Download as:
Download as PDF
Select render style:
ShortLong
PDF
Download as HTML
Select render style:
ShortLong
HTML
Download as Word
Select render style:
ShortLong
Word
Download as: To download, please limit the number of search results to 1,000 or less.

Place of employment

Latest activities and conferences

ID: 7532