Markus Herrgard

Markus Herrgard

Senior researcher

Kogle Alle 6, Building Thuja House, Room 2.L.01a

2970 Hørsholm


Mobile: 24 92 17 80

Manager of the iLoop Core organization at the NNF Center for Biosustainability. The iLoop (Iterative Cell Factory Development Loop) Core works on translational projects related to microbial cell factory engineering and consists of five platforms: 1) Genome engineering, 2) Screening and fermentation, 3) Automation, 4) Analytics, and 5) Sequencing, informatics and modeling.

I'm also the group leader for Sequencing, Informatics and Modeling Group at the NNF Center for Biosustainability. Our group works on:

  1. Genome-scale modeling of biochemical networks
  2. Data-driven computational approaches to cell factory design
  3. Systems biology of microbial platform cell factories
  4. Next generation sequencing applied to cell factory development
  5. Software development to support cell factory development workflows

We collaborate extensively with other groups at the CFB DTU site as well as CFB satellite sections at University of California San Diego and Chalmers University.

Publications:  Complete list of publications in Google Scholar

CV: LinkedIn profile

Group members:

  • Ida Bonde, postdoc, microbial bioinformatics
  • Joao Cardoso, research programmer, modeling software development
  • Anna Koza, postdoc, next generation sequencing
  • Rebecca Lennen, postdoc, platform strain development
  • Marta Matos, research programmer, modeling software development
  • Lasse Ebdrup Pedersen, postdoc, CHO bioinformatics
  • Lars Schöning, lead software engineer, software platform development
  • Niko Sonnenschein, research scientist, metabolic modeling 
  • Kai Zhuang, postdoc, multi-scale techno-economic modeling
  • Emre Özdemir, postdoc, metabolic modeling
View graph of relations
  • Frontiers in Microbiology

    ISSNs: 1664-302X

    Frontiers Research Foundation, Switzerland

    ISI indexed (2013): no, FI (2013): 1

    Central database


  • B M C Systems Biology

    ISSNs: 1752-0509, 17520509

    BioMed Central Ltd., United Kingdom

    ISI indexed (2013): yes, FI (2013): 1

    Central database


  • P L o S One

    ISSNs: 1932-6203, 19326203

    Public Library of Science, United States

    ISI indexed (2013): yes, FI (2013): 1

    Central database


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