David Ussery
- 2014
- Published
Analysis of pan-genome content and its application in microbial identification. / Lukjancenko, Oksana; Ussery, David (Main supervisor); Larsen, Mette Voldby (Supervisor).
Technical University of Denmark, 2014. 177 p.Publication: Research › Ph.D. thesis – Annual report year: 2014
- Published
Benchmarking of methods for genomic taxonomy.. / Larsen, Mette Voldby; Cosentino, Salvatore; Lukjancenko, Oksana; Saputra, Dhany; Rasmussen, Simon; Hasman, Henrik; Sicheritz-Pontén, Thomas; Aarestrup, Frank Møller; Ussery, David; Lund, Ole.
In: Journal of Clinical Microbiology, Vol. 52, No. 5, 2014, p. 1529-1539.Publication: Research - peer-review › Journal article – Annual report year: 2014
- Published
Determining and comparing protein function in Bacterial genome sequences. / Vesth, Tammi Camilla; Ussery, David (Main supervisor); Lagesen, Karin (Supervisor).
Technical University of Denmark, 2014. 101 p.Publication: Research › Ph.D. thesis – Annual report year: 2014
- Published
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.
In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.Publication: Research - peer-review › Journal article – Annual report year: 2014
- Published
Vibrio chromosome-specific families. / Lukjancenko, Oksana; Ussery, David.
In: Frontiers in Microbiology, Vol. 5, 2014.Publication: Research - peer-review › Journal article – Annual report year: 2014
- 2013
- Published
Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes.. / Bohlin, Jon; Brynildsrud, Ola Brønstad; Vesth, Tammi Camilla; Skjerve, Eystein; Ussery, David.
In: PLoS ONE, Vol. 8, No. 7, e69878, 2013.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.. / Vesth, Tammi Camilla; Lagesen, Karin; Acar, Öncel; Ussery, David.
In: P L o S One, Vol. 8, No. 4, 2013, p. e60120.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Development of bacterial resistance to biocides and antimicrobial agents as a consequence of biocide usage. / Seier-Petersen, Maria Amalie; Ussery, David (Supervisor); Aarestrup, Frank Møller (Main supervisor); Agersø, Yvonne (Supervisor).
Kgs. Lyngby : Technical University of Denmark, 2013. 151 p.Publication: Research › Ph.D. thesis – Annual report year: 2013
- Published
From essential to persistent genes: a functional approach to constructing synthetic life. / Acevedo-Rocha, Carlos G.; Fang, Gang; Schmidt, Markus; Ussery, David; Danchin, Antoine.
In: Trends in Genetics, Vol. 29, No. 5, 2013, p. 273-279.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart. / Holch, Anne; Webb, Kristen; Lukjancenko, Oksana; Ussery, David; Rosenthal, Benjamin M.; Gram, Lone.
In: Applied and Environmental Microbiology, Vol. 79, No. 9, 2013, p. 2944-2951.Publication: Research - peer-review › Journal article – Annual report year: 2013