Agnieszka Juncker

  1. 2014
  2. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  3. 2013
  4. Published

    Richness of human gut microbiome correlates with metabolic markers.. / Le Chatelier, Emmanuelle; Nielsen, Trine; Qin, Junjie; Prifti, Edi; Hildebrand, Falk; Falony, Gwen; Almeida, Mathieu; Arumugam, Manimozhiyan; Batto, Jean-Michel; Kennedy, Sean; Leonard, Pierre; Li, Junhua; Burgdorf, Kristoffer; Grarup, Niels; Jørgensen, Torben; Brandslund, Ivan; Nielsen, Henrik Bjørn; Juncker, Agnieszka; dos Santos, Marcelo Bertalan Quintanilha; Levenez, Florence; Pons, Nicolas; Rasmussen, Simon; Sunagawa, Shinichi; Tap, Julien; Tims, Sebastian; Zoetendal, Erwin G; Brunak, Søren; Clément, Karine; Doré, Joël; Kleerebezem, Michiel; Kristiansen, Karsten; Renault, Pierre; Sicheritz-Pontén, Thomas; de Vos, Willem M.; Zucker, Jean-Daniel; Raes, Jeroen; Hansen, Torben; Bork, Peer; Wang, Jun; Ehrlich, S Dusko; Pedersen, Oluf.

    In: Nature, Vol. 500, No. 7464, 2013, p. 541-546.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  5. Published

    Understanding the 3-hydroxypropionic acid tolerance mechanism in Saccharomyces cerevisiae. / Kildegaard, Kanchana Rueksomtawin; Juncker, Agnieszka; Hallstrom, Bjorn; Jensen, Niels Bjerg; Maury, Jerome; Nielsen, Jen; Förster, Jochen; Borodina, Irina.

    In: Yeast, Vol. 30, No. S1, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  6. 2012
  7. Published

    Hyperactivity of the Ero1α Oxidase Elicits Endoplasmic Reticulum Stress but No Broad Antioxidant Response. / Hansen, Henning Gram; Schmidt, Jonas Damgard; Soltoft, Cecilie Lutzen; Ramming, Thomas; Geertz-Hansen, Henrik Marcus; Christensen, Brian; Sorensen, Esben Skipper; Juncker, Agnieszka; Appenzeller-Herzog, Christian; Ellgaard, Lars.

    In: Journal of Biological Chemistry, Vol. 287, No. 47, 2012, p. 39513-39523.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  8. 2010
  9. Published
  10. 2009
  11. Published

    Analysis of Gene Expression Profiles of Microdissected Cell Populations Indicates that Testicular Carcinoma In situ Is an Arrested Gonocyte. / Sonne, S. B.; Almstrup, K.; Dalgaard, M.; Juncker, Agnieszka; Edsgard, D.; Ruban, L.; Harrison, N. J.; Schwager, C.; Abdollahi, A.; Huber, P. E.; Brunak, Søren; Gjerdrum, L. M.; Moore, H. D.; Andrews, P. W.; Skakkebæk, N. E.; Meyts, E. R. D.; Leffers, H.

    In: Cancer Research, Vol. 69, No. 12, 2009, p. 5241-5250.

    Publication: Research - peer-reviewJournal article – Annual report year: 2009

  12. Published

    Sequence-based feature prediction and annotation of proteins. / Juncker, Agnieszka; Jensen, Lars J.; Pierleoni, Andrea; Bernsel, Andreas; Tress, Michael L.; Bork, Peer; Von Heijne, Gunnar; Valencia, Alfonso; A Ouzounis, Christos; Casadio, Rita; Brunak, Søren.

    In: Genome Biology, Vol. 10, No. 2, 2009, p. 206.

    Publication: Research - peer-reviewJournal article – Annual report year: 2009

  13. Published
  14. 2008
  15. Published

    Alternative splicing in the ENCODE protein complement. / Tress, M.L.; Casadio, R.; Giorgetti, A.; Hallin, Peter Fischer; Juncker, Agnieszka; Kulberkyte, Eleonora; Martelli, P.; Raimondo, D.; Reeves, G.A.; Thornton, J.M.; Tramontano, A.; Wang, Kai; Wesselink, J.J.; Valencia, A.

    Modern Genome Annotation: The Biosapiens Network. Vol. Chapter 8.2 Springer, 2008. p. 453-480.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2008

  16. 2007
  17. Published
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