Stochastic Systems and Signals

  1. 2016
  2. Published

    How to determine local stretching and tension in a flow-stretched DNA molecule. / Pedersen, Jonas Nyvold; Marie, Rodolphe ; Kristensen, Anders; Flyvbjerg, Henrik.

    In: Physical Review E, Vol. 93, No. 4, 042405, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Optical tweezers theory near a flat surface: a pertubative method. / Flyvbjerg, Henrik; Dutra, Rafael de Sousa; Neto, Paolo A. Maia; Nussenzveig, H. Moyses.

    2016. Abstract from APS March Meeting 2016, Baltimore, MD, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

  4. Published
  5. 2015
  6. Published

    Concentrating Genomic Length DNA in a Microfabricated Array. / Chen, Yu ; Abrams, Ezra S. ; Boles, T. Christian ; Pedersen, Jonas Nyvold; Flyvbjerg, Henrik; Austin, Robert H.; Sturm, James C. .

    In: Physical Review Letters, Vol. 114, No. 19, 198303, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Configurational Statistics of Magnetic Bead Detection with Magnetoresistive Sensors. / Henriksen, Anders Dahl; Ley, Mikkel Wennemoes Hvitfeld; Flyvbjerg, Henrik; Hansen, Mikkel Fougt.

    In: P L o S One, Vol. 10, No. 10, e0141115, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Error filtering, pair assembly and error correction for next-generation sequencing reads. / Edgar, Robert C.; Flyvbjerg, Henrik.

    In: Bioinformatics, Vol. 31, No. 21, 2015, p. 3476-3482.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    Estimation of motility parameters from trajectory data : A condensate of our recent results. / Vestergaard, Christian L.; Pedersen, Jonas Nyvold; Mortensen, Kim I.; Flyvbjerg, Henrik.

    In: European Physical Journal. Special Topics, Vol. 224, No. 7, 2015, p. 1151-1168.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Harmonic Force Spectroscopy measures load-dependent kinetics of individual human β-cardiac myosin molecules. / Sung, Jongmin; Nag, Suman; Mortensen, Kim; Vestergaard, Christian L.; Sutton, Shirley; Ruppel, Katleen; Flyvbjerg, Henrik; Spudich, James A.

    In: Nature Communications, Vol. 6, 7931, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    New technologies for DNA analysis : a review of the READNA Project. / McGinn, Steven; Bauer, David; Brefort, Thomas; Dong, Liqin; El-Sagheer, Afaf; Elsharawy, Abdou; Evans, Geraint; Falk-Sörqvist, Elin; Forster, Michael; Fredriksson, Simon; Freeman, Peter; Freitag, Camilla; Fritzsche, Joachim; Gibson, Spencer; Gullberg, Mats; Heath, Simon; Heath-Brun, Isabelle; Heron, Andrew J.; Hohlbein, Johannes; Ke, Rongqin; Lancaster, Owen; Le Reste, Ludovic; Maglia, Giovanni; Marie, Rodolphe ; Mauger, Florence; Mertes, Florian; Mignardi, Marco; Moens, Lotte; Oostmeijer, Jelle; Out, Ruud; Pedersen, Jonas Nyvold; Persson, Fredrik; Picaud, Vincent; Rotem, Dvir; Schracke, Nadine; Sengenes, Jennifer; Stähler, Peer F.; Stade, Björn; Stoddart, David; Teng, Xia; Veal, Colin D.; Zahra, Nathalie; Bayley, Hagan; Beier, Markus; Brown, Tom; Dekker, Cees; Ekström, Björn; Flyvbjerg, Henrik; Franke, Andre; Guenther, Simone; Kapanidis, Achillefs N.; Kaye, Jane; Kristensen, Anders; Lehrach, Hans; Mangion, Jonathan; Sauer, Sascha; Schyns, Emile; Tost, Jörg; van Helvoort, Joop M.L.M.; van der Zaag, Pieter J.; Tegenfeldt, Jonas O.; Brookes, Anthony J.; Mir, Kalim; Nilsson, Mats; Willcocks, Spike; Gut, Ivo G.

    In: New Biotechnology, Vol. 33, No. 3, 2015, p. 311-330.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. Published

    Ny matematisk formel erstatter dyrt måleudstyr og booster eksperimenter. / Mortensen, Kim; Vestergaard, Christian ; Flyvbjerg, Henrik.

    01 January 2015.

    Publication: CommunicationInternet publication – Annual report year: 2015

  13. Published

    Optical mapping of single-molecule human DNA in disposable, mass-produced all-polymer. / Østergaard, Peter Friis; Lopacinska-Jørgensen, Joanna; Pedersen, Jonas Nyvold; Tommerup, Niels; Kristensen, Anders; Flyvbjerg, Henrik; Silahtaroglu, Asli; Marie, Rodolphe ; Taboryski, Rafael J.

    In: Journal of Micromechanics and Microengineering, Vol. 25, 2015, p. 105002.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published

    Optimized measurements of separations and angles between intra-molecular fluorescent markers. / Mortensen, Kim; Sung, Jongmin; Flyvbjerg, Henrik; Spudich, James A.

    In: Nature Communications, Vol. 6, 2015, p. 8621.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  15. Published
  16. 2014
  17. Published

    Harmonic Force Spectroscopy Reveals a Force-Velocity Curve from a Single Human Beta Cardiac Myosin Motor. / Sung, Jongmin; Nag, Suman; Vestergaard, Christian L.; Mortensen, Kim; Flyvbjerg, Henrik; Spudich, James.

    In: Biophysical Journal, Vol. 106, No. 2, 2014, p. 453A.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  18. Published

    How to get into that "room at the bottom".. / Flyvbjerg, Henrik.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, No. 37, 2014, p. 13249-13250.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published

    Nanofluidics to Enhance Single Molecule DNA Imaging : Detecting Genomic Structural Variation in Humans. / Bauer, David L. V.; Marie, Rodolphe ; Pedersen, Jonas Nyvold; Rasmussen, Kristian Hagsted; Yusuf, Mohammed; Volpi, Emanuela; Flyvbjerg, Henrik; Kristensen, Anders; Mir, Kalim U.

    In: BIOPHYSICAL JOURNAL, Vol. 106, No. 2, 2014, p. 395A.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  20. Published

    Optimal estimation of diffusion coefficients from single-particle trajectories. / Vestergaard, Christian L.; Blainey, Paul C.; Flyvbjerg, Henrik.

    In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, Vol. 89, No. 2, 2014, p. 022726.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  21. Published
  22. 2013
  23. Published

    A diagrammatic description of the equations of motion, current and noise within the second-order von Neumann approach. / Karlstrom, O.; Emary, C. ; Zedler, P.; Pedersen, Jonas Nyvold; Bergenfeldt, C.; Samuelsson, P.; Brandes, T. ; Wacker, A.

    In: Journal of Physics A: Mathematical and Theoretical, Vol. 46, No. 6, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  24. Published

    A nanofluidic device for mapping single DNA molecules to the human genome. / Marie, Rodolphe ; Pedersen, Jonas Nyvold; L. Bauer, David; Rasmussen, Kristian Hagsted; Yusuf, Mohamed; Volpi, Emanuela; U Mir, Kalim; Flyvbjerg, Henrik; Kristensen, Anders.

    Proceedings of the 39th International Conference on Micro and Nano Engineering. 2013.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  25. Published

    Calibration on the Spot of EMCCD Cameras for Super Resolution Microscopy. / Mortensen, Kim; Flyvbjerg, Henrik.

    In: BIOPHYSICAL JOURNAL, Vol. 104, No. 2; SUPP/1, 2013, p. 668a.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  26. Published

    Caulobacter chromosome in vivo configuration matches model predictions for a supercoiled polymer in a cell-like confinement. / Hong, Sun-Hae; Toro, Esteban; Mortensen, Kim; de la Rosa, Mario A. Díaz; Doniach, Sebastian; Shapiro, Lucy; Spakowitz, Andrew J.; McAdams, Harley H.

    In: National Academy of Sciences. Proceedings, Vol. 110, No. 5, 2013, p. 1674-1679.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  27. Published

    Fully Streched Single DNA Molecules in a Nanofluidic Chip Show Large-Scale Structural Variation. / Pedersen, Jonas Nyvold; Marie, Rodolphe ; Bauer, D. L.; Rasmussen, Kristian Hagsted; Yusuf, Mohamed Adan; Volpi, E. V.; Kristensen, Anders; Mir, K. U.; Flyvbjerg, Henrik.

    In: Biophysical Journal, Vol. 104, No. 2; SUPP/1, 2013, p. 175a.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2013

  28. Published

    Integrated view of genome structure and sequence of a single DNA molecule in a nanofluidic device. / Marie, Rodolphe ; Pedersen, Jonas Nyvold; L. V. Bauer, David ; Rasmussen, Kristian Hagsted; Yusuf, Mohammed; Volpi, Emanuela ; Flyvbjerg, Henrik; Kristensen, Anders; U. Mirb, Kalim.

    In: National Academy of Sciences. Proceedings, Vol. 110, No. 13, 2013, p. 4893-4898.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  29. Published

    Visualizing structural variations of single DNA molecules in a nanofluidic device. / Marie, Rodolphe ; Pedersen, Jonas Nyvold; Bauer, David L.V.; Rasmussen, Kristian Hagsted; Yusuf, Mohamed; Volpi, Emanuela; U Mir, Kalim; Flyvbjerg, Henrik; Kristensen, Anders.

    2013. Abstract from DNA in nanotechnology, Gothenburg, Sweden.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

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