Organic Chemistry

  1. 2014
  2. Published
  3. E-pub ahead of print

    A short designed semi-aromatic organic nanotube – synthesis, chiroptical characterization, and host properties. / Wixe, Torbjörn; Christensen, Niels Johan; Lidin, Sven; Fristrup, Peter; Wärnmark, Kenneth.

    In: Organic & Biomolecular Chemistry, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  4. Published

    Bacteria-Triggered Release of Antimicrobial Agents. / Komnatnyy, Vitaly V.; Chiang, Wen-Chi; Tolker-Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: Angewandte Chemie, Vol. 126, No. 2, 2014, p. 449-451.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  5. Published

    Bacteria‐Triggered Release of Antimicrobial Agents. / Komnatnyy, Vitaly V.; Chiang, Wen‐Chi; Tolker‐Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: Angewandte Chemie (International Edition), Vol. 53, No. 2, 2014, p. 439-441.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  6. Published
  7. Published

    Chemical tools for unraveling the substrate specificity of the lysine deacylase enzymes. / Madsen, Andreas Stahl; Olsen, Christian Adam.

    2014. Abstract from 248th American Chemical Society National Meeting & Exposition, San Francisco, CA, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  8. Published

    Distinct substrate specificities of three glycoside hydrolase family 42 β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697. / Viborg, Alexander Holm; Katayama, Takane; Abou Hachem, Maher ; Andersen, Mathias Bækbo; Nishimoto, Mamoru; Clausen, Mads Hartvig; Urashima, Tadasu; Svensson, Birte; Kitaoka, Motomitsu.

    In: Glycobiology, Vol. 24, No. 2, 2014, p. 20208-216.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Published
  10. Published

    Guanidino groups greatly enhance the action of antimicrobial peptidomimetics against bacterial cytoplasmic membranes.. / Andreev, Konstantin; Bianchi, Christopher; Laursen, Jonas Striegler; Citterio, Linda; Hein-Kristensen, Line; Gram, Lone; Kuzmenko, Ivan; Olsen, Christian Adam; Gidalevitz, David.

    In: Biochimica et Biophysica Acta. Biomembranes, Vol. 1838, No. 10, 2014, p. 2492-2502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  11. Published
  12. Published

    Lysine Glutarylation Is a Protein Posttranslational Modification Regulated by SIRT5. / Tan, Minjia; Peng, Chao; Anderson, Kristin A.; Chhoy, Peter; Xie, Zhongyu; Dai, Lunzhi; Park, Jeongsoon; Chen, Yue; Huang, He; Zhang, Yi; Ro, Jennifer; Wagner, Gregory R.; Green, Michelle F.; Madsen, Andreas Stahl; Schmiesing, Jessica; Peterson, Brett S.; Xu, Guofeng; Ilkayeva, Olga R.; Muehlbauer, Michael J.; Braulke, Thomas; Mühlhausen, Chris; Backos, Donald S.; Olsen, Christian Adam; McGuire, Peter J.; Pletcher, Scott D.; Lombard, David B.; Hirschey, Matthew D.; Zhao, Yingming.

    In: Cell Metabolism, Vol. 19, No. 4, 2014, p. 605-617.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  13. Published

    Metal-catalyzed variations on the Pictet-Spengler theme. / Hansen, Casper Lykke; Ascic, Erhad; Le Quement, Sebastian Thordal; Nielsen, Thomas Eiland.

    In: Abstracts of Papers of the American Chemical Society, Vol. 245, 831-ORGN , 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  14. E-pub ahead of print

    NMR Insights into the Inner Workings of Living Cells. / Lerche, Mathilde H.; Jensen, Pernille R.; Karlsson, Magnus; Meier, Sebastian.

    In: Analytical Chemistry, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published

    Novel 4-component reaction for the synthesis of boron heterocyclic scaffolds. / Petersen, Mette Terp; Flagstad, Thomas; Nielsen, Thomas Eiland.

    2014. Abstract from 14th Belgian Organic Synthesis Symposium, Louvain-La-Neuve, Belgium.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  16. Published
  17. Published

    Probing the structural details of xylan degradation by real-time NMR spectroscopy. / Petersen, Bent O.; Lok, Finn; Meier, Sebastian.

    In: Carbohydrate Polymers, Vol. 112, 2014, p. 587-594.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published

    Propargylamine-isothiocyanate reaction: efficient conjugation chemistry in aqueous media.. / Viart, Helene Marie-France; Larsen, T. S.; Tassone, Chiara; Andresen, Thomas Lars; Clausen, Mads Hartvig.

    In: Chemical Communications, Vol. 50, No. 58, 2014, p. 7800-7802.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published

    Relationship between Beta-Lactoglobulin and Bovine Submaxillary Mucin: Structure and Tribology Studies. / Celebioglu, Hilal Yilmaz; Guðjónsdóttir, María; Chronakis, Ioannis S.; Duus, Jens Øllgaard; Lee, Seunghwan.

    2014. Poster session presented at 12th International Conference on the Applications of Magnetic Resonance in Food Science, Cesena, Italy.

    Publication: ResearchPoster – Annual report year: 2014

  20. Published

    Ring-opening of cyclic ethers with carbon–carbon bond formation by Grignard reagents. / Christensen, Stig Holden; Holm, Torkil; Madsen, Robert.

    In: Tetrahedron, Vol. 70, No. 33, 2014, p. 4942-4946.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  21. Published

    Simultaneous Determination of Binding Constants for Multiple Carbohydrate Hosts in Complex Mixtures. / Meier, Sebastian; Beeren, Sophie R. .

    In: Journal of the american chemical society, Vol. 136, No. 32, 2014, p. 11284-11287.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  22. Published

    Solid‐Phase Synthesis and Biological Evaluation of N‐Dipeptido L‐Homoserine Lactones as Quorum Sensing Activators. / Hansen, Mette Reimert; Le Quement, Sebastian Thordal; Jakobsen, Tim Holm; Skovstrup, Søren; Taboureau, Olivier ; Tolker‐Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: ChemBioChem, Vol. 15, No. 3, 2014, p. 460-465.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Submitted

    Structural determination of Streptococcus pneumoniae repeat units inserotype 41and 41F capsular polysaccharides to probe gene functionsinthe corresponding capsularbiosynthetic loci. / Petersen, Bent O.; Skovsted, Ian C.; Paulsen, Berit Smestad; Redondo, Antonio R.; Meier, Sebastian.

    In: Carbohydrate Research, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. E-pub ahead of print
  25. Published
  26. Published
  27. Published
  28. Published
  29. Published

    The Effect of Various Zinc Binding Groups on Inhibition of Histone Deacetylases 1–11. / Madsen, Andreas Stahl; Kristensen, Helle M. E.; Lanz, Gyrithe; Olsen, Christian Adam.

    In: ChemMedChem, Vol. 9, No. 3, 2014, p. 614-626.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  30. Published

    The retro Grignard addition reaction revisited: the reversible addition of benzyl reagents to ketones. / Christensen, Stig Holden; Holm, Torkil; Madsen, Robert.

    In: Tetrahedron, Vol. 70, No. 7, 2014, p. 1478-1483.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  31. Published

    Tomato Cutin Deficient 1 (CD1) and putative orthologs comprise an ancient family of cutin synthase‐like (CUS) proteins that are conserved among land plants. / Yeats, Trevor H.; Huang, Wenlin; Chatterjee, Subhasish; Viart, Helene Marie-France; Clausen, Mads Hartvig; Stark, Ruth E.; Rose, Jocelyn K.C.

    In: Plant Journal, Vol. 77, No. 5, 2014, p. 667-675.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  32. Published

    Total synthesis and structural validation of cyclodepsipeptides solonamide A and B. / Kitir, Betül; Baldry, Mara; Ingmer, Hanne; Olsen, Christian Adam.

    In: Tetrahedron, Vol. 70, No. 42, 2014, p. 7721-7732.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  33. Published

    Unexpected Secoiridoid Glucosides from Manulea corymbosa. / Gousiadou, Chrysoula; Kokubun, Tetsuo; Gotfredsen, Charlotte Held; Jensen, Søren Rosendal.

    In: Journal of Natural Products, Vol. 77, 2014, p. 589-595.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  34. Published

    Unmixing the NMR spectra of similar species – vive la diffe ́rence. / Colbourne, Adam A. ; Meier, Sebastian; Morris, Gareth A. ; Nielsson, M.

    In: Chemical Communications, 2014, p. 10510--10512.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  35. 2013
  36. Published
  37. Published

    A Mild Method for Regioselective Labeling of Aromatics with Radioactive Iodine. / Rønnest, Mads Holger; Nissen, Felix; Pedersen, Palle Jacob; Larsen, Thomas Ostenfeld; Mier, Walter; Clausen, Mads Hartvig.

    In: European Journal of Organic Chemistry, Vol. 2013, No. 19, 2013, p. 3970-3973.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  38. Published

    An Update on Lysine Deacylases Targeting the Expanding “Acylome”. / Olsen, Christian Adam.

    In: ChemMedChem, Vol. 9, No. 3, 2013, p. 434-437.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  39. Published
  40. Published

    Clearance of Pseudomonas aeruginosa Foreign-Body Biofilm Infections through Reduction of the Cyclic Di-GMP Level in the Bacteria. / Christensen, Louise D.; van Gennip, Maria; Rybtke, Morten Theil; Wu, Hong; Chiang, Wen-Chi; Alhede, Morten; Høiby, Niels; Nielsen, Thomas Eiland; Givskov, Michael; Tolker-Nielsen, Tim.

    In: Infection and Immunity, Vol. 81, No. 8, 2013, p. 202705-2713.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  41. Published

    Computational Enzymology, a ReaxFF approach. / Corozzi, Alessandro; Fristrup, Peter (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 251 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  42. Published

    Conformational analysis of Gly-Ala-NHMe in D2O and DMSO solutions: A two-dimensional infrared spectroscopy study. / Candelaresi, Marco; Ragnoni, Elena; Cappelli, Chiara; Corozzi, Alessandro; Lima, Manuela; Monti, Susanna; Mennucci, Benedetta; Nuti, Francesca; Papini, Anna Maria; Foggi, Paolo.

    In: Journal of Physical Chemistry B, Vol. 117, No. 46, 2013, p. 14226-14237.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  43. Published

    Design, Synthesis and Biological Evaluation of Quorum Sensing Modulators. / Hansen, Mette Reimert; Nielsen, Thomas Eiland (Main supervisor).

    Technical University of Denmark, Department of Chemical Engineering, 2013. 183 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  44. Published

    Discovery of a novel selective PPARγ ligand with partial agonist binding properties by integrated in silico / in vitro work flow. / Kouskoumvekaki, Irene; Petersen, Rasmus K.; Fratev, Filip Filipov ; Taboureau, Olivier ; Nielsen, Thomas Eiland; Oprea, Tudor; Sonne, Si Brask; Flindt, Esben N.; Jonsdottir, Svava Osk; Kristiansen, Karsten.

    In: Journal of Chemical Information and Modeling, Vol. 53, No. 4, 2013, p. 923-937.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  45. Published
  46. Published
  47. Published

    Exploring the conformational and reactive dynamics of biomolecules in solution using an extended version of the glycine reactive force field. / Monti, Susanna; Corozzi, Alessandro; Fristrup, Peter; Joshi, Kaushik L.; Shin, Yun Kyung; Oelschlaeger, Peter; van Duin, Adri C. T.; Barone, Vincenzo.

    In: Physical Chemistry Chemical Physics, Vol. 15, No. 36, 2013, p. 15062-15077.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  48. Published

    Extracellular DNA Shields against Aminoglycosides in Pseudomonas aeruginosa Biofilms. / Chiang, Wen-Chi; Nilsson, Martin; Jensen, Peter Østrup; Høiby, Niels; Nielsen, Thomas Eiland; Givskov, Michael; Tolker-Nielsen, Tim.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 5, 2013, p. 202352-2361.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  49. Published

    Formation of carboxy- and amide-terminated alkyl monolayers on silicon(111) investigated by ATR-FTIR, XPS, and X-ray scattering: Construction of photoswitchable surfaces. / Rück-Braun, Karola; Petersen, Michael Åxman; Michalik, Fabian; Hebert, Andreas; Przyrembel, Daniel; Weber, Christopher; Ahmed, Saleh A.; Kowarik, Stefan; Weinelt, Martin.

    In: Langmuir, Vol. 29, No. 37, 2013, p. 11758-11769.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  50. Published

    Further elucidation of the Grignard-addition reaction. / Christensen, Stig Holden; Holm, Torkil; Madsen, Robert.

    In: Abstracts of Papers of the American Chemical Society, Vol. 245, 552-ORGN , 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  51. Published

    Identification of Five Structurally Unrelated Quorum-Sensing Inhibitors of Pseudomonas aeruginosa from a Natural-Derivative Database. / Tan, Sean Yang-Yi; Chua, Song-Lin; Chen, Yicai; Rice, Scott A.; Kjelleberg, Staffan; Nielsen, Thomas Eiland; Yang, Liang; Givskov, Michael Christian.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 11, 2013, p. 5629-5641.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  52. Published

    Identification of Four New agr Quorum Sensing-Interfering Cyclodepsipeptides from a Marine Photobacterium. / Kjærulff, Louise; Nielsen, Anita; Månsson, Maria; Gram, Lone; Larsen, Thomas Ostenfeld; Ingmer, Hanne; Gotfredsen, Charlotte Held.

    In: Marine Drugs, Vol. 11, No. 12, 2013, p. 5051-5062.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

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