Novo Nordisk Foundation Center for Biosustainability

  1. 2015
  2. Published

    antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters. / Weber, Tilmann; Blin, Kai; Duddela, Srikanth; Krug, Daniel; Kim, Hyun Uk; Bruccoleri, Robert; Lee, Sang Yup; Fischbach, Michael A.; Müller, Rolf; Wohlleben, Wolfgang.

    In: Nucleic Acids Research, Vol. 43, No. W1, 05.2015, p. W237-W243.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    Ach1 is involved in shuttling mitochondrial acetyl units for cytosolic C2 provision in Saccharomyces cerevisiae lacking pyruvate decarboxylase. / Chen, Yun; Zhang, Yiming; Siewers, Verena; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 15, No. 3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Accepted/In press

    A logical data representation framework for electricity-driven bioproduction processes. / Patil, Sunil A.; Gildemyn, Sylvia; Pant, Deepak; Zengler, Karsten; Logan, Bruce E.; Rabaey, Korneel.

    In: Biotechnology Advances, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published
  6. Published

    Applications of computational modeling in metabolic engineering of yeast. / Kerkhoven, Eduard J.; Lahtvee, Petri-Jaan; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 15, No. 1, 2015, p. 1-13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published
  8. Published

    A streamlined ribosome profiling protocol for the characterization of microorganisms. / Latif, Haythem; Szubin, Richard; Tan, Justin; Brunk, Elizabeth; Lechner, Anna; Zengler, Karsten; Palsson, Bernhard O.

    In: BioTechniques, Vol. 58, No. 6, 2015, p. 329-332.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    A systems approach to traditional oriental medicine. / Kim, Hyun Uk; Ryu, Jae Yong; Lee, Jong Ok; Lee, Sang Yup.

    In: Nature Biotechnology, Vol. 33, No. 3, 2015, p. 264-268.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Biorefineries for the production of top building block chemicals and their derivatives. / Choi, Sol; Song, Chan Woo; Shin, Jae Ho; Lee, Sang Yup.

    In: Metabolic Engineering, Vol. 28, 2015, p. 223-239.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. E-pub ahead of print
  13. E-pub ahead of print

    Co-evolution of strain design methods based on flux balance and elementary mode analysis. / Machado, Daniel; Herrgard, Markus.

    In: Metabolic Engineering Communications, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published
  15. E-pub ahead of print
  16. Published

    Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors. / Österlund, Tobias; Bordel, Sergio; Nielsen, Jens.

    In: Integrative Biology, Vol. 7, No. 5, 2015, p. 560-568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  17. Published
  18. E-pub ahead of print

    CRISPR-Cas9 Based Engineering of Actinomycetal Genomes. / Tong, Yaojun; Charusanti, Pep; Zhang, Lixin; Weber, Tilmann; Lee, Sang Yup.

    In: A C S Synthetic Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. Accepted/In press

    CRISPR/Cas9-mediated genome engineering of CHO cell factories: Application and perspectives. / Lee, Jae Seong; Grav, Lise Marie; Lewis, Nathan E.; Kildegaard, Helene Faustrup.

    In: Biotechnology Journal, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published
  21. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  22. E-pub ahead of print

    Deep sequencing reveals different compositions of mRNA transcribed from the F8 gene in a panel of FVIII-producing CHO cell lines. / Kaas, Christian Schrøder; Bolt, Gert; Hansen, Jens J; Andersen, Mikael Rørdam; Kristensen, Claus.

    In: Biotechnology Journal, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. Published

    Design of homo-organic acid producing strains using multi-objective optimization. / Kim, Tae Yong; Park, Jong Myoung; Kim, Hyun Uk; Cho, Kwang Myung; Lee, Sang Yup.

    In: Metabolic Engineering, Vol. 28, 2015, p. 63-73.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. E-pub ahead of print

    Development of a VHH-Based Erythropoietin Quantification Assay. / Kol, Stefan; Beuchert Kallehauge, Thomas; Adema, Simon; Hermans, Pim.

    In: Molecular Biotechnology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  25. Published
  26. Published

    Diversity of small RNAs expressed in Pseudomonas species. / Gomez-Lozano, Mara; Marvig, Rasmus Lykke; Molina-Santiago, Carlos; Tribelli, Paula Maria; Ramos, Juan-Luis; Molin, Søren.

    In: Environmental Microbiology Reports, Vol. 7, No. 2, 2015, p. 227-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  27. Published

    Electrifying microbes for the production of chemicals. / Tremblay, Pier-Luc; Zhang, Tian.

    In: Frontiers in Microbiology, Vol. 6, 201, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Society of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: ResearchPoster – Annual report year: 2015

  29. Published

    Engineering the oxygen sensing regulation results in an enhanced recombinant human hemoglobin production by Saccharomyces cerevisiae. / Martínez, José L.; Liu, Lifang; Petranovic, Dina; Nielsen, Jens.

    In: Biotechnology and Bioengineering, Vol. 112, No. 1, 2015, p. 181–188.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  30. Published

    Enhanced amino acid utilization sustains growth of cells lacking Snf1/AMPK. / Nicastro, Raffaele; Tripodi, Farida; Guzzi, Cinzia; Reghellin, Veronica; Khoomrung, Sakda; Capusoni, Claudia; Compagno, Concetta; Airoldi, Cristina; Nielsen, Jens; Alberghina, Lilia; Coccetti, Paola.

    In: B B A - Molecular Cell Research, Vol. 1853, No. 7, 2015, p. 1615-1625.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  31. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published

    Extended spectrum beta-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment. / Kjeldsen, Thea S. B.; Sommer, Morten Otto Alexander; Olsen, John E.

    In: B M C Microbiology, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published

    Fast and sensitive detection of indels induced by precise gene targeting. / Yang, Zhang; Steentoft, Catharina; Hauge, Camilla; Hansen, Lars; Thomsen, Allan Lind; Niola, Francesco; Vester-Christensen, Malene Bech; Frödin, Morten; Clausen, Henrik; Wandall, Hans H.; Bennett, Eric P.

    In: Nucleic Acids Research, Vol. 43, No. 9, e59, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  34. Published

    Fast Swinnex Filtration (FSF): A fast and robust sampling and extraction method suitable for metabolomics analysis of cultures grown in complex media. / McCloskey, Douglas; Utrilla, Jose; Naviaux, Robert K.; Palsson, Bernhard O.; Feist, Adam.

    In: Metabolomics, Vol. 11, No. 1, 2015, p. 198-209.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  35. Published

    Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria. / Machado, Henrique; Sonnenschein, Eva; Melchiorsen, Jette; Gram, Lone.

    In: B M C Genomics, Vol. 16, 158, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  36. Published
  37. Published

    How to set up collaborations between academia and industrial biotech companies. / Pronk, Jack T.; Lee, Sang Yup; Lievense, Jeff; Pierce, John; Palsson, Bernhard; Uhlén, Mathias; Nielsen, Jens.

    In: Nature Biotechnology, Vol. 33, No. 3, 2015, p. 237-240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  38. Accepted/In press

    Impact of synthetic biology and metabolic engineering on industrial production of fine chemicals. / Jullesson, David; David, Florian; Pfleger, Brian; Nielsen, Jens.

    In: Biotechnology Advances, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  39. Published

    LC-MS analysis reveals the presence of graminan- and neo-type fructans in wheat grains. / Verspreet, Joran; Hansen, Anders Holmgaard; Dornez, Emmie; Delcour, Jan A.; Van den Ende, Wim; Harrison, Scott James; Courtin, Christophe M.

    In: Journal of Cereal Science, Vol. 61, 2015, p. 133-138.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published
  41. Published

    Methods for modeling chinese hamster ovary (cho) cell metabolism.. / Herrgard, Markus (Inventor); Pedersen, Lasse Ebdrup (Inventor); Lewis, Nathan S. (Inventor); Bruntse, Anders Bech (Inventor).

    IPC No.: C12N5/07. Patent No.: WO2015010088. Jul 19, 2013.

    Publication: ResearchPatent – Annual report year: 2015

  42. Published

    Model-driven discovery of underground metabolic functions in Escherichia coli. / Guzmán, Gabriela I.; Utrilla, José; Nurk, Sergey; Brunk, Elizabeth; Monk, Jonathan M.; Ebrahim, Ali; Palsson, Bernhard O.; Feist, Adam M.

    In: Proceedings of the National Academy of Sciences, Vol. 112, No. 3, 2015, p. 929-934.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  43. Accepted/In press
  44. Published

    Multi-omic profiling of EPO-producing CHO cell panel reveals metabolic adaptation to heterologous protein production. / Ley, Daniel; Kazemi Seresht, Ali; Engmark, Mikael; Magdenoska, Olivera; Nielsen, Kristian Fog; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2015. Poster session presented at 24th ESACT meeting, Barcelona, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  45. Published
  46. Published

    Multispot array combined with S1 nuclease-mediated elimination of unpaired nucleotides. / Yoo, Seung Min; Kim, Dong Min; Lee, Sang Yup.

    In: BioChip Journal, Vol. 9, No. 2, 2015, p. 156-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  47. Published

    New paradigms for metabolic modeling of human cells. / Mardinoglu, Adil; Nielsen, Jens.

    In: Current Opinion in Biotechnology, Vol. 34, 2015, p. 91-97.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  48. Published

    Next-generation genome-scale models for metabolic engineering. / King, Zachary A.; Lloyd, Colton J.; Feist, Adam M.; Palsson, Bernhard O.

    In: Current Opinion in Biotechnology, Vol. 35, 2015, p. 23-29.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published

    N-Glycosylation optimization of recombinant antibodies in CHO cell through process and metabolic engineering. / Fan, Yuzhou; Andersen, Mikael Rørdam (Supervisor); Weilguny, Dietmar (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 158 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  50. E-pub ahead of print
  51. E-pub ahead of print
Previous 1 2 3 4 5 6 Next
Download list:
Download as PDF
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
PDF
Download as HTML
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
HTML
Download as Word
Select render style:
APAAuthorCBE/CSEHarvardMLAStandardVancouverShortLong
Word