Novo Nordisk Foundation Center for Biosustainability

  1. 2016
  2. Published
  3. Published

    Bacteria as transporters of phosphorus through soil. / Glæsner, N.; Bælum, Jacob; Jacobsen, C. S.; Ritz, C.; Rubæk, G. H.; Kjaergaard, C.; Magid, J.

    In: European Journal of Soil Science, Vol. 67, No. 1, 2016, p. 99-108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Biobased organic acids production by metabolically engineered microorganisms. / Chen, Yun; Nielsen, Jens.

    In: Current Opinion in Biotechnology, Vol. 37, 2016, p. 165-172.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Bioinformatics Tools for the Discovery of New Nonribosomal Peptides. / Leclère, Valérie; Weber, Tilmann; Jacques, Philippe; Pupin, Maude.

    Nonribosomal Peptide and Polyketide Biosynthesis: Methods and Protocols. Vol. 1401 Springer, 2016. p. 209-232 (Methods in Molecular Biology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2016

  6. Published

    CRISPR/Cas9 advances engineering of microbial cell factories. / Jakociunas, Tadas; Jensen, Michael Krogh; Keasling, Jay D.

    In: Metabolic Engineering, Vol. 34, 2016, p. 44-59.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    CRMAGE: CRISPR Optimized MAGE Recombineering. / Ronda, Carlotta; Pedersen, Lasse Ebdrup; Sommer, Morten Otto Alexander; Nielsen, Alex Toftgaard.

    In: Scientific Reports, Vol. 6, 19452, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Elucidating the molecular physiology of lantibiotic NAI-107 production in Microbispora ATCC-PTA-5024. / Gallo, Giuseppe; Renzone, Giovanni; Palazzotto, Emilia; Monciardini, Paolo; Arena, Simona; Faddetta, Teresa; Giardina, Anna; Alduina, Rosa; Weber, Tilmann; Sangiorgi, Fabio; Russo, Alessandro; Spinelli, Giovanni; Sosio, Margherita; Scaloni, Andrea; Puglia, Anna Maria.

    In: B M C Genomics, Vol. 17, No. 42, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Genome-Scale Models. / Bergdahl, Basti; Sonnenschein, Nikolaus; Machado, Daniel; Herrgard, Markus; Förster, Jochen.

    Fundamental Bioengineering. ed. / John Villadsen. 1st edition. ed. Weinheim, Germany : Wiley-VCH, 2016. p. 143-182 (Advanced Biotechnology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  10. Published

    Glycoprofiling effects of media additives on IgG produced by CHO cells in fed-batch bioreactors. / Kildegaard, Helene Faustrup; Fan, Yuzhou; Wagtberg Sen, Jette; Larsen, Bo; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), Vol. 113, No. 2, 2016, p. 359-366.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. E-pub ahead of print

    Heme metabolism in stress regulation and protein production: from Cinderella to a key player. / Martínez, J. L.; Petranovic, D.; Nielsen, Jens.

    In: Bioengineered, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  12. E-pub ahead of print

    Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes. / Bordbar, Aarash; Johansson, Pär I.; Paglia, Giuseppe; Harrison, Scott James; Wichuk, Kristine; Magnusdottir, Manuela; Valgeirsdottir, Sóley; Gybel-Brask, Mikkel; Ostrowski, Sisse R.; Rolfsson, Ottar; Sigurjónsson, Olafur E.; Hansen, Morten B.; Gudmundsson, Sveinn; Palsson, Bernhard O.

    In: Transfusion, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  13. Published

    Improved production of fatty acids by Saccharomyces cerevisiae through screening a cDNA library from the oleaginous yeast Yarrowia lipolytica. / Shi, Shuobo; Ji, Haichuan; Siewers, Verena; Nielsen, Jens.

    In: Fems Yeast Research, Vol. 16, No. 1, fov108, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  14. Published

    Improved quantification of farnesene during microbial production from Saccharomyces cerevisiae in two-liquid-phase fermentations. / Tippmann, Stefan; Nielsen, Jens; Khoomrung, Sakda.

    In: Talanta, Vol. 146, 2016, p. 100-106.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  15. Published

    Physiological and transcriptional characterization of Saccharomyces cerevisiae engineered for production of fatty acid ethyl esters. / de Jong, Bouke Wim; Siewers, Verena; Nielsen, Jens.

    In: Fems Yeast Research, Vol. 16, No. 1, fov105, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  16. E-pub ahead of print
  17. Published

    Production of farnesene and santalene by Saccharomyces cerevisiae using fed-batch cultivations with RQ-controlled feed. / Tippmann, Stefan; Scalcinati, Gionata ; Siewers, Verena; Nielsen, Jens.

    In: Biotechnology and Bioengineering, Vol. 113, No. 1, 2016, p. 72-81.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  18. Published

    Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis. / Krueger, Andrew S.; Munck, Christian; Dantas, Gautam; Church, George M.; Galagan, James; Lehár, Joseph; Sommer, Morten Otto Alexander.

    In: P L o S One, Vol. 11, No. 1, e0147651, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  19. Published

    Trehalose-6-phosphate synthase and stabilization of yeast glycolysis. / Fraenkel, Dan; Nielsen, Jens.

    In: Fems Yeast Research, Vol. 16, No. 1, fov100, 2016.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  20. 2015
  21. Published
  22. Published

    Novel Methods for Development of Cell Factories and Laboratory Simultations. / Bonde, Mads; Sommer, Morten Otto Alexander (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2015. 315 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  23. Published

    Towards evolution-guided microbial engineering - tools development and applications. / Genee, Hans Jasper; Sommer, Morten Otto Alexander (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2015. 274 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  24. Published

    3D Graphene-based bio-cathode for Carbon dioxide reduction in Microbial Electrosynthesis. / Aryal, Nabin; Halder, Arnab; Tremblay, Pier-Luc; Chi, Qijin; Zhang, Tian.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. P-2.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  25. Published

    Accurate Dna Assembly And Direct Genome Integration With Optimized Uracil Excision Cloning To Facilitate Engineering Of Escherichia Coli As A Cell Factory. / Cavaleiro, Ana Mafalda; Kim, Se Hyeuk; Nørholm, Morten.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 77-77.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  26. Published
  27. Published

    Ach1 is involved in shuttling mitochondrial acetyl units for cytosolic C2 provision in Saccharomyces cerevisiae lacking pyruvate decarboxylase. / Chen, Yun; Zhang, Yiming; Siewers, Verena; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 15, No. 3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published
  29. Published

    Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain. / Zhang, Yiming; Liu, Guodong; Engqvist, Martin K. M.; Krivoruchko, Anastasia; Hallström, Björn M.; Chen, Yun; Siewers, Verena; Nielsen, Jens.

    In: Microbial Cell Factories, Vol. 14, 116, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  30. Published

    Advancing gut microbiome research using cultivation. / Sommer, Morten OA.

    In: Current Opinion in Microbiology, Vol. 27, 2015, p. 127-132.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  31. Published

    Advancing metabolic engineering through systems biology of industrial microorganisms. / Dai, Zongjie; Nielsen, Jens.

    In: Current Opinion in Biotechnology, Vol. 36, 2015, p. 8-15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published

    A logical data representation framework for electricity-driven bioproduction processes. / Patil, Sunil A.; Gildemyn, Sylvia; Pant, Deepak; Zengler, Karsten; Logan, Bruce E.; Rabaey, Korneel.

    In: Biotechnology Advances, Vol. 33, No. 6, 2015, p. 736-744.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published

    A longitudinal study of lung bacterial pathogens in patients with primary ciliary dyskinesia. / C. Alanin, M.; G. Nielsen, K.; von Buchwald, C.; Skov, M.; Aanaes, K.; Høiby, N.; Johansen, Helle Krogh.

    In: Clinical Microbiology and Infection, Vol. 21, No. 12, 2015, p. 1093.e1-1093.e7.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  34. Published

    A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Lund, Anne Mathilde; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Baycin-Hizal, Deniz; Betenbaugh, Michael J.; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), Vol. 112, No. 10, 2015, p. 2172-2184.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  35. Published
  36. Published

    A Multi-Scale, Multi-Disciplinary Approach for Assessing the Technological, Economic, and Environmental Performance of Bio-Based Chemicals. / Campodonico, Miguel; Herrgard, Markus; Sukumara, Sumesh; Zhuang, Kai.

    Book of Abstracts. DTU's Sustain Conference 2015. Technical University of Denmark, 2015. A-16.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  37. Published

    Analysis of gene essentiality in Escherichia coli across strains and growth conditions. / Bonde, Ida; Lennen, Rebecca; Cardoso, Joao; Koza, Anna; Herrgard, Markus.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  38. Published
  39. Published

    An Antibiotic Selection System For Protein Overproducing Bacteria. / Rennig, Maja; Nørholm, Morten.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 76-77.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  40. Published

    A novel monoclonal antibody to a defined peptide epitope in MUC16. / Marcos-Silva, Lara; Ricardo, Sara; Chen, Kowa; Blixt, Ola; Arigi, Emma; Pereira, Daniela; Høgdall, Estrid; Mandel, Ulla; Bennett, Eric P.; Vakhrushev, Sergey Y.; David, Leonor; Clausen, Henrik.

    In: Glycobiology, Vol. 25, No. 11, 2015, p. 1172-1182.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published

    antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters. / Weber, Tilmann; Blin, Kai; Duddela, Srikanth; Krug, Daniel; Kim, Hyun Uk; Bruccoleri, Robert; Lee, Sang Yup; Fischbach, Michael A.; Müller, Rolf; Wohlleben, Wolfgang.

    In: Nucleic Acids Research, Vol. 43, No. W1, 2015, p. W237-W243.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  42. Published

    A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites. / McCloskey, Douglas; Gangoiti, Jon A.; Palsson, Bernhard O.; Feist, Adam M.

    In: Metabolomics, Vol. 11, No. 5, 2015, p. 1338-1350.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  43. Published

    Application of synthetic biology for production of chemicals in yeast Saccharomyces cerevisiae. / Borodina, Irina; Li, Mingji.

    In: F E M S Yeast Research, Vol. 15, No. 1, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    Applications of computational modeling in metabolic engineering of yeast. / Kerkhoven, Eduard J.; Lahtvee, Petri-Jaan; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 15, No. 1, 2015, p. 1-13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  45. Published

    A retrospective metagenomics approach to studying Blastocystis. / Andersen, Lee O'Brien; Bonde, Ida; Nielsen, Henrik Bjørn; Stensvold, Christen Rune.

    In: F E M S Microbiology Reviews, Vol. 91, No. 7, fiv072, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  46. Published
  47. Published
  48. Published

    A streamlined ribosome profiling protocol for the characterization of microorganisms. / Latif, Haythem; Szubin, Richard; Tan, Justin; Brunk, Elizabeth; Lechner, Anna; Zengler, Karsten; Palsson, Bernhard O.

    In: BioTechniques, Vol. 58, No. 6, 2015, p. 329-332.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published

    A systems approach to traditional oriental medicine. / Kim, Hyun Uk; Ryu, Jae Yong; Lee, Jong Ok; Lee, Sang Yup.

    In: Nature Biotechnology, Vol. 33, No. 3, 2015, p. 264-268.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  50. Published

    Bacteriocin-mediated competition in cystic fibrosis lung infections. / Ghoul, Melanie; West, Stuart A.; Johansen, Helle Krogh; Molin, Søren; Harrison, Odile B.; Maiden, Martin C. J.; Jelsbak, Lars; Bruce, John B.; Griffin, Ashleigh S.

    In: Royal Society of London. Proceedings B. Biological Sciences, Vol. 282, No. 1814, 20150972, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  51. Published
  52. Published

    BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. / King, Zachary A.; Lu, Justin; Dräger, Andreas; Miller, Philip; Federowicz, Stephen; Lerman, Joshua A.; Ebrahim, Ali; Palsson, Bernhard O.; Lewis, Nathan E.

    In: Nucleic Acids Research, Vol. 44, gkv1049, 2015, p. D515-D522.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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