Novo Nordisk Foundation Center for Biosustainability

  1. 2016
  2. Published
  3. Published

    Bacteria as transporters of phosphorus through soil. / Glæsner, N.; Bælum, Jacob; Jacobsen, C. S.; Ritz, C.; Rubæk, G. H.; Kjaergaard, C.; Magid, J.

    In: European Journal of Soil Science, Vol. 67, No. 1, 2016, p. 99-108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Biobased organic acids production by metabolically engineered microorganisms. / Chen, Yun; Nielsen, Jens.

    In: Current Opinion in Biotechnology, Vol. 37, 2016, p. 165-172.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Bioinformatics Tools for the Discovery of New Nonribosomal Peptides. / Leclère, Valérie; Weber, Tilmann; Jacques, Philippe; Pupin, Maude.

    Nonribosomal Peptide and Polyketide Biosynthesis: Methods and Protocols. Vol. 1401 Springer, 2016. p. 209-232 (Methods in Molecular Biology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2016

  6. E-pub ahead of print

    Chemical Inhibition of Autophagy: Examining its Potential to Increase the Specific Productivity of Recombinant CHO Cell Lines. / Baek, Eric; Lin Kim, Che; Gyeom Kim, Mi; Lee, Jae Seong; Min Lee, Gyun.

    In: Biotechnology and Bioengineering (Print), 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    CRISPR/Cas9 advances engineering of microbial cell factories. / Jakociunas, Tadas; Jensen, Michael Krogh; Keasling, Jay D.

    In: Metabolic Engineering, Vol. 34, 2016, p. 44-59.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    CRMAGE: CRISPR Optimized MAGE Recombineering. / Ronda, Carlotta; Pedersen, Lasse Ebdrup; Sommer, Morten Otto Alexander; Nielsen, Alex Toftgaard.

    In: Scientific Reports, Vol. 6, 19452, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Differentiating samples and experimental protocols by direct comparison of tandem mass spectra. / van der Plas-Duivesteijn, Suzanne J.; Wulff, Tune; Klychnikov, Oleg; Ohana, Dana; Dalebout, Hans; van Veelen, Peter A.; de Keijzer, Jeroen; Nessen, Merel A.; van der Burgt, Yuri E. M.; Deelder, André M.; Palmblad, Magnus.

    In: Rapid Communications in Mass Spectrometry, Vol. 30, No. 6, 2016, p. 731-738.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published
  11. Published

    Elucidating the molecular physiology of lantibiotic NAI-107 production in Microbispora ATCC-PTA-5024. / Gallo, Giuseppe; Renzone, Giovanni; Palazzotto, Emilia; Monciardini, Paolo; Arena, Simona; Faddetta, Teresa; Giardina, Anna; Alduina, Rosa; Weber, Tilmann; Sangiorgi, Fabio; Russo, Alessandro; Spinelli, Giovanni; Sosio, Margherita; Scaloni, Andrea; Puglia, Anna Maria.

    In: B M C Genomics, Vol. 17, No. 42, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  12. Published
  13. Published

    Engineering Cellular Metabolism. / Nielsen, Jens; Keasling, Jay.

    In: Cell, Vol. 164, No. 6, 2016, p. 1185-1197.

    Publication: Research - peer-reviewReview – Annual report year: 2016

  14. Published
  15. Published

    Evolution of E. coli on [U-13C] Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology. / Sandberg, Troy E.; Long, Christopher P.; Gonzalez, Jacqueline E.; Feist, Adam M.; Antoniewicz, Maciek R.; Palsson, Bernhard O.; Cirino, Patrick C. (Editor).

    In: P L o S One, Vol. 11, No. 3, e0151130, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  16. Published
  17. Published

    Flux Control at the Malonyl-CoA Node through Hierarchical Dynamic Pathway Regulation in Saccharomyces cerevisiae. / David, Florian; Nielsen, Jens; Siewers, Verena.

    In: A C S Synthetic Biology, Vol. 5, No. 3, 2016, p. 224-233.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  18. Published

    Generation of structurally novel short carotenoids and study of their biological activity. / Kim, Se Hyeuk; Kim, Moon S.; Lee, Bun Y.; Lee, Pyung C.

    In: Scientific Reports, Vol. 6, 21987, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  19. Published

    Genome-scale metabolic model of Pichia pastoris with native and humanized glycosylation of recombinant proteins. / Irani, Zahra Azimzadeh; Kerkhoven, Eduard J.; Shojaosadati, Seyed Abbas; Nielsen, Jens.

    In: Biotechnology and Bioengineering, Vol. 113, No. 5, 2016, p. 961-969.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    Genome-Scale Models. / Bergdahl, Basti; Sonnenschein, Nikolaus; Machado, Daniel; Herrgard, Markus; Förster, Jochen.

    Fundamental Bioengineering. ed. / John Villadsen. 1st edition. ed. Weinheim, Germany : Wiley-VCH, 2016. p. 143-182 (Advanced Biotechnology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  21. Published

    Glycoprofiling effects of media additives on IgG produced by CHO cells in fed-batch bioreactors. / Kildegaard, Helene Faustrup; Fan, Yuzhou; Wagtberg Sen, Jette; Larsen, Bo; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), Vol. 113, No. 2, 2016, p. 359-366.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  22. E-pub ahead of print

    Heme metabolism in stress regulation and protein production: from Cinderella to a key player. / Martínez, J. L.; Petranovic, D.; Nielsen, Jens.

    In: Bioengineered, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  23. Published

    Identification and activation of novel biosynthetic gene clusters by genome mining in the kirromycin producer Streptomyces collinus Tü 365. / Iftime, Dumitrita; Kulik, Andreas; Härtner, Thomas; Rohrer, Sabrina; Niedermeyer, Timo Horst Johannes; Stegmann, Evi; Weber, Tilmann; Wohlleben, Wolfgang.

    In: Journal of Industrial Microbiology and Biotechnology, Vol. 43, No. 2, 2016, p. 277-291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published

    Identification of meat products by shotgun spectral matching. / Ohana, D.; Dalebout, H.; Marissen, R. J.; Wulff, Tune; Bergquist, J.; Deelder, A. M.; Palmblad, M.

    In: Food Chemistry, Vol. 203, 2016, p. 28-34.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  25. Published

    Identified metabolic signature for assessing red blood cell unit quality is associated with endothelial damage markers and clinical outcomes. / Bordbar, Aarash; Johansson, Pär I.; Paglia, Giuseppe; Harrison, Scott James; Wichuk, Kristine; Magnusdottir, Manuela; Valgeirsdottir, Sóley; Gybel-Brask, Mikkel; Ostrowski, Sisse R.; Rolfsson, Ottar; Sigurjónsson, Olafur E.; Hansen, Morten B.; Gudmundsson, Sveinn; Palsson, Bernhard O.

    In: Transfusion, Vol. 56, No. 4, 2016, p. 852-862.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  26. Published

    Improved production of fatty acids by Saccharomyces cerevisiae through screening a cDNA library from the oleaginous yeast Yarrowia lipolytica. / Shi, Shuobo; Ji, Haichuan; Siewers, Verena; Nielsen, Jens.

    In: Fems Yeast Research, Vol. 16, No. 1, fov108, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  27. Published

    Improved quantification of farnesene during microbial production from Saccharomyces cerevisiae in two-liquid-phase fermentations. / Tippmann, Stefan; Nielsen, Jens; Khoomrung, Sakda.

    In: Talanta, Vol. 146, 2016, p. 100-106.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published

    Industrial systems biology and its impact on synthetic biology of yeast cell factories. / Fletcher, Eugene; Krivoruchko, Anastasia; Nielsen, Jens.

    In: Biotechnology and Bioengineering, Vol. 113, No. 6, 2016, p. 1164-1170.

    Publication: Research - peer-reviewReview – Annual report year: 2015

  29. E-pub ahead of print
  30. Published

    Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase. / Nilsson, Avlant; Nielsen, Jens.

    In: Scientific Reports, Vol. 6, 22264, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  31. Published

    (Meta-)genome mining for new ribo-regulators. / Sommer, Morten Otto Alexander; Suess, Beatrix.

    In: Science Magazine, Vol. 352, No. 6282, 2016, p. 144-145.

    Publication: CommunicationJournal article – Annual report year: 2016

  32. Published

    MID Max: LC–MS/MS Method for Measuring the Precursor and Product Mass Isotopomer Distributions of Metabolic Intermediates and Cofactors for Metabolic Flux Analysis Applications. / McCloskey, Douglas; Young, Jamey D.; Xu, Sibei; Palsson, Bernhard O.; Feist, Adam M.

    In: Analytical Chemistry, Vol. 88, No. 2, 2016, p. 1362–1370.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  33. Published

    Modeling Method for Increased Precision and Scope of Directly Measurable Fluxes at a Genome-Scale. / McCloskey, Douglas; Young, Jamey D.; Xu, Sibei; Palsson, Bernhard O.; Feist, Adam M.

    In: Analytical Chemistry, Vol. 88, No. 7, 2016, p. 3844-3852.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  34. Published

    Mutanalyst, an online tool for assessing the mutational spectrum of epPCR libraries with poor sampling. / Ferla, Matteo.

    In: B M C Bioinformatics, Vol. 17, No. 1, 152, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  35. Published

    Physiological and transcriptional characterization of Saccharomyces cerevisiae engineered for production of fatty acid ethyl esters. / de Jong, Bouke Wim; Siewers, Verena; Nielsen, Jens.

    In: Fems Yeast Research, Vol. 16, No. 1, fov105, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  36. Published

    Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosacystic fibrosis bacterial isolates. / Friman, Ville-Petri; Soanes-Brown, Daniel; Sierocinski, Pawel; Molin, Søren; Johansen, Helle Krogh; Merabishvili, Maya; Pirnay, Jean-Paul; De Vos, Daniel; Buckling, Angus.

    In: Journal of Evolutionary Biology, Vol. 29, No. 1, 2016, p. 188-198.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  37. Published
  38. Published

    Principles of Systems Biology, No. 2. / Klausen, Michael Schantz; Sommer, Morten Otto Alexander.

    In: Cell Systems, Vol. 2, No. 2, 2016, p. 60-61.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2016

  39. Published

    Production of farnesene and santalene by Saccharomyces cerevisiae using fed-batch cultivations with RQ-controlled feed. / Tippmann, Stefan; Scalcinati, Gionata ; Siewers, Verena; Nielsen, Jens.

    In: Biotechnology and Bioengineering, Vol. 113, No. 1, 2016, p. 72-81.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published

    Relation between tetR and tetA expression in tetracycline resistant Escherichia coli. / Møller, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: B M C Microbiology, Vol. 16, No. 1, 649, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  41. Published

    Role of Protein Phosphorylation in the Regulation of Cell Cycle and DNA-Related Processes in Bacteria. / Garcia-Garcia, Transito; Poncet, Sandrine; Derouiche, Abderahmane; Shi, Lei; Mijakovic, Ivan; Noirot-Gros, Marie-Francoise.

    In: Frontiers in Microbiology, Vol. 7, 184, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  42. E-pub ahead of print
  43. Published

    Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis. / Krueger, Andrew S.; Munck, Christian; Dantas, Gautam; Church, George M.; Galagan, James; Lehár, Joseph; Sommer, Morten Otto Alexander.

    In: P L o S One, Vol. 11, No. 1, e0147651, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  44. Published

    Thermophilic acetogens for the production of higher value compounds from (biomass derived) waste gas streams. / Redl, Stephanie; Jensen, Torbjørn Ølshøj; Nielsen, Alex Toftgaard.

    2016. Abstract from Eco-Bio 2016, Rotterdam, Netherlands.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

  45. Published

    Transcriptomics resources of human tissues and organs. / Uhlén, Mathias; Hallström, Björn M.; Lindskog, Cecilia; Mardinoglu, Adil; Pontén, Fredrik; Nielsen, Jens.

    In: Molecular Systems Biology, Vol. 12, No. 4, 862, 2016.

    Publication: Research - peer-reviewReview – Annual report year: 2016

  46. Published
  47. Published

    Trehalose-6-phosphate synthase and stabilization of yeast glycolysis. / Fraenkel, Dan; Nielsen, Jens.

    In: Fems Yeast Research, Vol. 16, No. 1, fov100, 2016.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  48. Published

    Voices of biotech. / Amit, Ido; Baker, David; Barker, Roger; Berger, Bonnie; Bertozzi, Carolyn; Bhatia, Sangeeta; Biffi, Alessandra; Demichelis, Francesca; Doudna, Jennifer; Dowdy, Steven F.; Sommer, Morten Otto Alexander; Zhang, Tian.

    In: Nature Biotechnology. 2016 ; 34(3), 01 January 2016. p. 270-275.

    Publication: CommunicationFeature article – Annual report year: 2016

  49. 2015
  50. Published
  51. Published

    Novel Methods for Development of Cell Factories and Laboratory Simultations. / Bonde, Mads; Sommer, Morten Otto Alexander (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2015. 315 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  52. Published

    Towards evolution-guided microbial engineering - tools development and applications. / Genee, Hans Jasper; Sommer, Morten Otto Alexander (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2015. 274 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  53. Published

    3D Graphene-based bio-cathode for Carbon dioxide reduction in Microbial Electrosynthesis. / Aryal, Nabin; Halder, Arnab; Tremblay, Pier-Luc; Chi, Qijin; Zhang, Tian.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. P-2.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  54. Published

    Accurate Dna Assembly And Direct Genome Integration With Optimized Uracil Excision Cloning To Facilitate Engineering Of Escherichia Coli As A Cell Factory. / Cavaleiro, Ana Mafalda; Kim, Se Hyeuk; Nørholm, Morten.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 77-77.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  55. Published
  56. Published

    Ach1 is involved in shuttling mitochondrial acetyl units for cytosolic C2 provision in Saccharomyces cerevisiae lacking pyruvate decarboxylase. / Chen, Yun; Zhang, Yiming; Siewers, Verena; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 15, No. 3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  57. Published
  58. Published

    Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain. / Zhang, Yiming; Liu, Guodong; Engqvist, Martin K. M.; Krivoruchko, Anastasia; Hallström, Björn M.; Chen, Yun; Siewers, Verena; Nielsen, Jens.

    In: Microbial Cell Factories, Vol. 14, 116, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  59. Published

    Advancing gut microbiome research using cultivation. / Sommer, Morten OA.

    In: Current Opinion in Microbiology, Vol. 27, 2015, p. 127-132.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  60. Published

    Advancing metabolic engineering through systems biology of industrial microorganisms. / Dai, Zongjie; Nielsen, Jens.

    In: Current Opinion in Biotechnology, Vol. 36, 2015, p. 8-15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  61. Published

    A logical data representation framework for electricity-driven bioproduction processes. / Patil, Sunil A.; Gildemyn, Sylvia; Pant, Deepak; Zengler, Karsten; Logan, Bruce E.; Rabaey, Korneel.

    In: Biotechnology Advances, Vol. 33, No. 6, 2015, p. 736-744.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  62. Published

    A longitudinal study of lung bacterial pathogens in patients with primary ciliary dyskinesia. / C. Alanin, M.; G. Nielsen, K.; von Buchwald, C.; Skov, M.; Aanaes, K.; Høiby, N.; Johansen, Helle Krogh.

    In: Clinical Microbiology and Infection, Vol. 21, No. 12, 2015, p. 1093.e1-1093.e7.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  63. Published

    A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Lund, Anne Mathilde; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Baycin-Hizal, Deniz; Betenbaugh, Michael J.; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), Vol. 112, No. 10, 2015, p. 2172-2184.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  64. Published
  65. Published

    A Multi-Scale, Multi-Disciplinary Approach for Assessing the Technological, Economic, and Environmental Performance of Bio-Based Chemicals. / Campodonico, Miguel; Herrgard, Markus; Sukumara, Sumesh; Zhuang, Kai.

    Book of Abstracts. DTU's Sustain Conference 2015. Technical University of Denmark, 2015. A-16.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  66. Published

    Analysis of gene essentiality in Escherichia coli across strains and growth conditions. / Bonde, Ida; Lennen, Rebecca; Cardoso, Joao; Koza, Anna; Herrgard, Markus.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  67. Published
  68. Published

    An Antibiotic Selection System For Protein Overproducing Bacteria. / Rennig, Maja; Nørholm, Morten.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 76-77.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  69. Published

    A novel monoclonal antibody to a defined peptide epitope in MUC16. / Marcos-Silva, Lara; Ricardo, Sara; Chen, Kowa; Blixt, Ola; Arigi, Emma; Pereira, Daniela; Høgdall, Estrid; Mandel, Ulla; Bennett, Eric P.; Vakhrushev, Sergey Y.; David, Leonor; Clausen, Henrik.

    In: Glycobiology, Vol. 25, No. 11, 2015, p. 1172-1182.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  70. Published

    antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters. / Weber, Tilmann; Blin, Kai; Duddela, Srikanth; Krug, Daniel; Kim, Hyun Uk; Bruccoleri, Robert; Lee, Sang Yup; Fischbach, Michael A.; Müller, Rolf; Wohlleben, Wolfgang.

    In: Nucleic Acids Research, Vol. 43, No. W1, 2015, p. W237-W243.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  71. Published

    A pH and solvent optimized reverse-phase ion-paring-LC–MS/MS method that leverages multiple scan-types for targeted absolute quantification of intracellular metabolites. / McCloskey, Douglas; Gangoiti, Jon A.; Palsson, Bernhard O.; Feist, Adam M.

    In: Metabolomics, Vol. 11, No. 5, 2015, p. 1338-1350.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  72. Published

    Application of synthetic biology for production of chemicals in yeast Saccharomyces cerevisiae. / Borodina, Irina; Li, Mingji.

    In: F E M S Yeast Research, Vol. 15, No. 1, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  73. Published

    Applications of computational modeling in metabolic engineering of yeast. / Kerkhoven, Eduard J.; Lahtvee, Petri-Jaan; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 15, No. 1, 2015, p. 1-13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  74. Published

    A retrospective metagenomics approach to studying Blastocystis. / Andersen, Lee O'Brien; Bonde, Ida; Nielsen, Henrik Bjørn; Stensvold, Christen Rune.

    In: F E M S Microbiology Reviews, Vol. 91, No. 7, fiv072, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  75. Published
  76. Published
  77. Published

    A streamlined ribosome profiling protocol for the characterization of microorganisms. / Latif, Haythem; Szubin, Richard; Tan, Justin; Brunk, Elizabeth; Lechner, Anna; Zengler, Karsten; Palsson, Bernhard O.

    In: BioTechniques, Vol. 58, No. 6, 2015, p. 329-332.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  78. Published

    A systems approach to traditional oriental medicine. / Kim, Hyun Uk; Ryu, Jae Yong; Lee, Jong Ok; Lee, Sang Yup.

    In: Nature Biotechnology, Vol. 33, No. 3, 2015, p. 264-268.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  79. Published

    Bacteriocin-mediated competition in cystic fibrosis lung infections. / Ghoul, Melanie; West, Stuart A.; Johansen, Helle Krogh; Molin, Søren; Harrison, Odile B.; Maiden, Martin C. J.; Jelsbak, Lars; Bruce, John B.; Griffin, Ashleigh S.

    In: Royal Society of London. Proceedings B. Biological Sciences, Vol. 282, No. 1814, 20150972, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  80. Published
  81. Published

    BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. / King, Zachary A.; Lu, Justin; Dräger, Andreas; Miller, Philip; Federowicz, Stephen; Lerman, Joshua A.; Ebrahim, Ali; Palsson, Bernhard O.; Lewis, Nathan E.

    In: Nucleic Acids Research, Vol. 44, gkv1049, 2015, p. D515-D522.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  82. Published

    Bioproduction of chemical Compounds by CO2 fixing cell factories. / Ammam, Fariza; Tremblay, Pier-Luc; Lizak, Dawid Mariusz; Zengler, Karsten; Zhang, Tian.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-2.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  83. Published

    Biorefineries for the production of top building block chemicals and their derivatives. / Choi, Sol; Song, Chan Woo; Shin, Jae Ho; Lee, Sang Yup.

    In: Metabolic Engineering, Vol. 28, 2015, p. 223-239.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  84. Published

    Biosensor-based genome screening platform for the production of Biosynthetic Precursors and coFactors in E. coli.. / Cardinale, Stefano; Ye, Lumeng; Sommer, Morten.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-14.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  85. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  86. Published

    Cancer Metabolism: A Modeling Perspective. / Ghaffari, Pouyan; Mardinoglu, Adil; Nielsen, Jens.

    In: Frontiers in Physiology, Vol. 6, 382, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  87. Published

    Carbon Source Influences Population Heterogeneity In Pseudomonas Putida Kt2440 Biofilms. / Juel Christensen, Anne-Mette; Sternberg, Claus; Molin, Søren.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 41-41.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  88. Published
  89. Published

    Chemical production by microbial electrosynthesis. / Zhang, Tian.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. P-3.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  90. Accepted/In press

    Codon optimizing for increased membrane protein production : a minimalist approach. / Mirzadeh, K.; Toddo, S.; Nørholm, Morten.

    In: Methods in Molecular Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  91. Published

    Co-evolution of strain design methods based on flux balance and elementary mode analysis. / Machado, Daniel; Herrgard, Markus.

    In: Metabolic Engineering Communications, Vol. 2, 2015, p. 85-92.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  92. Published
  93. Published
  94. Published

    Computing the functional proteome : recent progress and future prospects for genome-scale models. / O'Brien, Edward J.; Palsson, Bernhard.

    In: Current Opinion in Biotechnology, Vol. 34, 2015, p. 125-134.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  95. Published

    Conditional protein depletion using small degradation tags and CRISPR/Cas9 systems. / Martinez, Virginia; Lauritsen, Ida; Wolff, Tonja; Nørholm, Morten H.H.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-4.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  96. Published

    Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors. / Österlund, Tobias; Bordel, Sergio; Nielsen, Jens.

    In: Integrative Biology, Vol. 7, No. 5, 2015, p. 560-568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  97. Published
  98. Published

    Conversion of fatty acids to their corresponding alcohols by Sporomusa ovata using Microbial Electrosynthesis (MES) technology. / Ammam, Fariza; Aryal, Nabin; Lizak, Dawid Mariusz; Tremblay, Pier-Luc; Zengler, Karsten; Zhang, Tian.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-13.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  99. Published
  100. Published

    CRISPR-Cas9 Based Engineering of Actinomycetal Genomes. / Tong, Yaojun; Charusanti, Pep; Zhang, Lixin; Weber, Tilmann; Lee, Sang Yup.

    In: A C S Synthetic Biology, Vol. 4, No. 9, 2015, p. 1020-1029.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  101. Published

    CRISPR/Cas9-mediated genome engineering of CHO cell factories: application and perspectives. / Lee, Jae Seong; Grav, Lise Marie; Lewis, Nathan E.; Kildegaard, Helene Faustrup.

    In: Biotechnology Journal, Vol. 10, No. 7, 2015, p. 979-994.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  102. Published
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