Division for Epidemiology and Microbial Genomics

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  1. 2013
  2. Published

    A brief multi-disciplinary review on antimicrobial resistance in medicine and its linkage to the global environmental microbiota.. / Cantas, L.; Shah, Syed Q A; Cavaco, Lina; Manaia, C. M.; Walsh, F.; Popowska, M.; Garelick, H.; Bürgmann, H.; Sørum, H.

    In: Frontiers in Microbiology, Vol. 4, 2013, p. 96.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  3. Accepted

    Active Ulcerative Colitis is associated with low prevalence of Blastocystis and Dientamoeba fragilis infection. / Munk Petersen, Andreas; Rune Stensvold, Christen; Mirsepasi, Hengameh; Engberg, Jørgen; Friis-Møller, Alice; Porsbo, Lone Jannok; Hammerum, Anette M.; Nordgaard-Lassen, Inge; Vedel Nielsen, Henrik; Angeliki Krogfelt, Karen.

    In: Scandinavian Journal of Gastroenterology, 2013.

    Publication: Research - peer-review › Letter – Annual report year: 2013

  4. Published

    A long-lasting outbreak of Salmonella Typhimurium U323 associated with several pork products, Denmark, 2010. / Kuhn, K. G. ; Sørensen, Gitte; Torpdahl, M.; Jensen, T.; Gubbels, S.; Bjergager, G. O.; Wingstrand, Anne; Porsbo, Lone Jannok; Ethelberg, S.

    In: Epidemiology and Infection, Vol. 141, No. 2, 2013, p. 260-268.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  5. Published

    Antibiotikaresistens. / Agersø, Yvonne.

    In: Review over resultater af Fødevarestyrelsens CKL projekter 2000-2010. Søborg : DTU Fødevareinstituttet, 2013. p. 49-50.

    Publication: Research › Book chapter – Annual report year: 2013

  6. Published

    Antimicrobial resistance and molecular epidemiology of streptococci from bovine mastitis. / Rato, Márcia G.; Bexiga, Ricardo; Florindo, Carlos; Cavaco, Lina M.; Vilela, Cristina L.; Santos-Sanches, Ilda.

    In: Veterinary Microbiology, Vol. 161, No. 3-4, 2013, p. 286-294.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  7. Published

    Assessing the Applicability of Currently Available Methods for Attributing Foodborne Disease to Sources, Including Food and Food Commodities. / Pires, Sara Monteiro.

    In: Foodborne Pathogens and Disease, Vol. 10, No. 3, 2013, p. 206-213.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  8. Published

    Campylobacter contamination and the relative risk of illness from organic broiler meat in comparison with conventional broiler meat. / Rosenquist, Hanne; Boysen, Louise; Krogh, Anne Louise; Jensen, Annette Nygaard; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 226-230.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  9. Published

    Case-by-case risk assessment of broiler meat batches: An effective control strategy for Campylobacter. / Christensen, Bjarke Bak; Nauta, Maarten; Korsgaard, Helle; Sørensen, Anna Irene Vedel; Rosenquist, Hanne; Boysen, Louise; Perge, Annette ; Nørrung, Birgit.

    In: Food Control, Vol. 31, No. 2, 2013, p. 485-490.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  10. Published

    Characterization of IncN plasmids carrying blaCTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans. / Dolejska, Monika; Villa, Laura; Hasman, Henrik; Hansen, Lars; Carattoli, Alessandra.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 2, 2013, p. 333-339.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  11. Published

    CLK review - Campylobacter. / Rosenquist, Hanne; Boysen, Louise.

    In: Review over resultater af Fødevarestyrelsens CKL projekter 2000-2010. Søborg : DTU Fødevareinstituttet, 2013. p. 4-20.

    Publication: Research › Book chapter – Annual report year: 2013

  12. Published

    Comparing antimicrobial exposure based on sales data. / Bondt, Nico; Jensen, Vibeke Frøkjær; Puister-Jansen, Linda F.; van Geijlswijk, Ingeborg M.

    In: Preventive Veterinary Medicine, Vol. 108, No. 1, 2013, p. 10-20.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  13. Published

    Detection of a Shiga toxin- and extended-spectrum-β-lactamase-producing Escherichia coli O157:H7 human clinical isolate. / Torpdahl, Mia; Nielsen, Eva M.; Scheutz, Flemming; Olesen, Bente; Hansen, Dennis S.; Hasman, Henrik.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 5, 2013, p. 1203-1204.

    Publication: Research - peer-review › Letter – Annual report year: 2013

  14. Published

    Effects of decontamination at varying contamination levels of Campylobacter jejuni on broiler meat. / Boysen, Louise; Wechter, Naja Strandby; Rosenquist, Hanne.

    In: Poultry Science, Vol. 92, No. 5, 2013, p. 1425-1429.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  15. Published

    EFSA Panel on Biological Hazards (BIOHAZ); Norovirus (NoV) in oysters: methods, limits and control options. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 39 p. (The EFSA Journal; No. 2500, Vol. 10(1)).

    Publication: Research - peer-review › Report – Annual report year: 2013

  16. Published

    EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on the risk of transmission of classical scrapie via in vivo derived embryo transfer in ovine animals. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 15 p. (The EFSA Journal; No. 3080, Vol. 11(2)).

    Publication: Research - peer-review › Report – Annual report year: 2013

  17. Published

    Establishment of Risk based microbiological criteria in the Nordic countries: A case study on Campylobacter in broiler meat.. / Nauta, Maarten.

    National Food Institute, Technical University of Denmark, 2013. 87 p.

    Publication: Research › Report – Annual report year: 2013

  18. Published

    Estimating the true incidence of campylobacteriosis and salmonellosis in the European Union, 2009. / Havelaar, A. H.; Ivarsson, S.; Lofdahl, M.; Nauta, Maarten.

    In: Epidemiology and Infection, Vol. 141, No. 2, 2013, p. 293-302.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  19. Published

    External quality assurance system (EQAS) for identification of mastitis pathogens in Denmark from 2006 to 2011. / Karlsmose, Susanne; Kunstmann, L.; Rundsten, Carsten Friis; Krogh, K.; Larsen, H.K.D.; Jensen, Arne Bent; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: Preventive Veterinary Medicine, Vol. 109, No. 3-4, 2013, p. 271-277.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  20. Published

    Extremely Drug-Resistant Salmonella enterica Serovar Senftenberg Infections in Patients in Zambia.. / Hendriksen, Rene S.; Joensen, Katrine Grimstrup; Lukwesa-Musyani, Chileshe; Kalondaa, Annie; Leekitcharoenphon, Pimlapas; Nakazwe, Ruth; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C L.

    In: Journal of Clinical Microbiology, Vol. 51, No. 1, 2013, p. 284-286.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  21. Published

    Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing. / Zankari, Ea; Hasman, Henrik; Kaas, Rolf Sommer; Seyfarth, Anne Mette; Agersø, Yvonne; Lund, Ole; Larsen, Mette Voldby; Aarestrup, Frank Møller.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 4, 2013, p. 771-777.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  22. Published

    Human risk from thermotolerant Campylobacter on broiler meat in Denmark. / Boysen, Louise; Nauta, Maarten; Ribeiro Duarte, Ana Sofia; Rosenquist, Hanne.

    In: International Journal of Food Microbiology, Vol. 162, No. 2, 2013, p. 129-134.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  23. Published

    Molecular clonality and antimicrobial resistance in Salmonella enterica serovars Enteritidis and Infantis from broilers in three Northern regions of Iran. / Rahmani, Maral; Peighambari, Seyed Mostafa; Svendsen, Christina Aaby; Cavaco, Lina; Agersø, Yvonne; Hendriksen, Rene S.

    In: B M C Veterinary Research, Vol. 9, No. 1, 2013.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  24. Published

    Occurrence of Salmonella in retail beef and related meat products in Zaria, Nigeria. / Tafida, S.Y.; Kabir, J.; Kwaga, J.K.P.; Bello, M.; Umoh, V.J.; Yakubu, S.E.; Nok, A.J.; Hendriksen, Rene S.

    In: Food Control, Vol. 32, No. 1, 2013, p. 119-124.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  25. Published

    Organic acids for control of Salmonella in different feed materials. / Koyuncu, Sevinc; Andersson, Mats Gunnar; Löfström, Charlotta; Skandamis, Panagiotis N.; Gounadaki, Antonia; Zentek, Jürgen; Häggblom, Per .

    In: B M C Veterinary Research, Vol. 9, 2013, p. 81.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  26. Published

    Public Health Risks of Enterobacterial Isolates Producing Extended-Spectrum β-Lactamases or AmpC β-Lactamases in Food and Food-Producing Animals: An EU Perspective of Epidemiology, Analytical Methods, Risk Factors, and Control Options. / Liebana, Ernesto; Carattoli, Alessandra; Coque, Teresa M.; Hasman, Henrik; Magiorakos, Anna-Pelagia; Mevius, Dik; Peixe, Luisa; Poirel, Laurent; Schuepbach-Regula, Gertraud; Torneke, Karolina; Torren-Edo, Jordi; Torres, Carmen; Threlfall, John.

    In: Clinical Infectious Diseases, Vol. 56, No. 7, 2013, p. 1030-1037.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  27. Published

    Regarding “The Economic Efficiency of Sampling Size: The Case of Beef Trim”. / Powell, Mark R.; Nauta, Maarten; Schaffner, Don; Zwietering, Marcel.

    In: Risk Analysis, Vol. 33, No. 3, 2013, p. 350-352.

    Publication: Research › Letter – Annual report year: 2013

  28. Published

    Resistance in bacteria of the food chain: epidemiology and control strategies. / Cavaco, Lina; Aarestrup, Frank Møller.

    In: Microbial Drug Resistance. Future Medicine Ltd, 2013. p. 134-156.

    Publication: Research - peer-review › Book chapter – Annual report year: 2013

  29. Published

    Voluntary ban on cephalosporin use in Danish pig production has effectively reduced extended-spectrum cephalosporinase-producing Escherichia coli in slaughter pigs. / Agersø, Yvonne; Aarestrup, Frank Møller.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 3, 2013, p. 569-572.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  30. 2012
  31. Published

    Acid stress response and protein induction in Campylobacter jejuni isolates with different acid tolerance.. / Birk, Tina; Wik, Monica Takamiya; Lametsch, René; Knøchel, Susanne.

    In: B M C Microbiology, Vol. 12, No. 174, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  32. Published

    Alkalilactibacillus ikkensis, gen. nov., sp. nov., a novel enzyme-producing bacterium from a cold and alkaline environment in Greenland. / Schmidt, Mariane; Priemé, Anders; Johansen, Anders; Stougaard, Peter .

    In: Extremophiles, Vol. 16, 2012, p. 297-305.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  33. Published

    Annual Report on Zoonoses in Denmark 2011. / Helwigh, Birgitte (Editor); Müller, Luise (Editor).

    Søborg : DTU Food, 2012. 65 p.

    Publication: Research - peer-review › Report – Annual report year: 2012

  34. Published

    Antibiotikavejledning til familedyr. / Spohr, A.; Schjøth, B.; Wiinberg, B.; Houser, G.; Willesen, J.; Rem Jessen, L.; Guardabassi, L.; Schjærff, M.; Eriksen, T.; Jensen, Vibeke Frøkjær.

    København Ø : Sektion vedr. Hund, Kat og Smådyr, SvHKS, 2012. 113 p.

    Publication: Research › Book – Annual report year: 2012

  35. Published

    Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008. / Tajbakhsh, Mercedeh ; Hendriksen, Rene S.; Nochi, Zahra ; Zali, Mohammad Reza ; Aarestrup, Frank Møller; Garcia-Migura, L. .

    In: Folia Microbiologica, Vol. 57, 2012, p. 91–97.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  36. Published

    A proactive attempt to control an outbreak of foodborne disease in humans after detection of Salmonella during surveillance and control of pork in Denmark. / Wingstrand, Anne; Jensen, T.; Sørensen, Gitte; Gubbels, S. ; Porsbo, Lone Jannok; Ethelberg, S.; Bjerager, G. O. ; Kjeldsen, Marianne Kirstine; Torpdahl, M.; Kuhn, K. G.

    In: Case studies in food safety and authenticity: Lessons from real-life situations. ed. / J. Hoorfar. Woodhead Publishing, 2012. (Woodhead Publishing Series in Food Science, Technology and Nutrition, Vol. 240).

    Publication: Research - peer-review › Book chapter – Annual report year: 2012

  37. Published

    Assessment of the human-health impact of Salmonella in animal feed. / Hald, Tine; Wingstrand, Anne; Pires, Sara Monteiro; Vieira, Antonio; Coutinho Calado Domingues, Ana Rita; Lundsby, Katrine Løvenbalk; Dalhoff Andersen, Vibe; Thrane, Charlotte .

    Danmarks Tekniske Universitet, 2012. 75 p.

    Publication: Research › Report – Annual report year: 2012

  38. Published

    Bedste resultat af ringtesten nogensinde. / Hendriksen, Rene S.; Kunstmann, Lars; Dyring Jensen, Jacob; Cavaco, Lina; Jensen, Arne Bent; Dahl, Heidi Kristina; Aarestrup, Frank Møller.

    In: Dyrlægen, Vol. 5, No. 4, 2012, p. 8-13.

    Publication: Research › Journal article – Annual report year: 2012

  39. Published

    Campylobacter i Danmark - bekæmpelse, human risiko og smittekilder. / Boysen, Louise.

    In: Miljø og Sundhed, Vol. 18, No. 3, 2012, p. 4-8.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  40. Published

    Campylobacter in Denmark : control, human risk and source attribution. / Boysen, Louise; Rosenquist, Hanne (Supervisor); Hald, Tine (Supervisor); Ethelberg, Steen (Supervisor).

    Søborg : DTU Food, 2012. 79 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2012

  41. Published

    Characterization of CTX-M-14- and CTX-M-15-producing Escherichia coli of porcine origin. / Hammerum, Anette M.; Jakobsen, Lotte; Olsen, Stefan S.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 67, No. 8, 2012, p. 2047-2049.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  42. Published

    Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand. / Hendriksen, Rene S.; Hyytia-Trees, Eija; Pulsrikarn, Chaiwat; Pornruangwong, Srirat; Chaichana, Phattharaporn; Svendsen, Christina Aaby; Ahmed, Rafiq; Mikoleit, Matthew.

    In: B M C Microbiology, Vol. 12, No. 92, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  43. Published

    Community incidence of pathogen-specific gastroenteritis: reconstructing the surveillance pyramid for seven pathogens in seven European Union member states. / Haagsma, J. A.; Geenen, P. L.; Ethelberg, S.; Fetsch, A.; Hansdotter, F.; Jansen, A.; Korsgaard, Helle; O'Brien, S. J.; Scavia, G.; Spitznagel, H.; Stefanoff, P.; Tam, C. C.; Havelaar, A. H.

    In: Epidemiology and Infection, Vol. 27, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  44. Published

    Comparison between Livestock and Community associated MRSA in Europe. / Cavaco, Lina; Miragaia, M.; Rolo, J.; Conceicao, T.; Hasman, Henrik; Aarestrup, Frank Møller; de Lencastre, H.

    2012. Poster session presented at 3rd ASM Conference on Antimicrobial Resistance in Zoonotic Bacteria and Foodborne Pathogens in Animals, Humans and the Environment, Aix-en-Provence, France.

    Publication: Research - peer-review › Poster – Annual report year: 2012

  45. Published

    Comparison of proficiency testing results on antimicrobial susceptibility testing of Salmonella and Campylobacter obtained by laboratories from the ECDC FWD network (public health) and the EURL-AR network (veterinary/food) 2011.. / Karlsmose, Susanne; Cavaco, Lina; Hendriksen, Rene S.; Aarestrup, Frank Møller.

    1st ed. The National Food Institute, Technical University of Denmark, 2012. 19 p.

    Publication: Research - peer-review › Report – Annual report year: 2012

  46. Published

    DANMAP 2011 : DANMAP 2011 - Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark . / Agersø, Yvonne; Hald, Tine; Helwigh, Birgitte; Borck Høg, Birgitte; Jensen, Lars Bogø; Jensen, Vibeke Frøkjær; Korsgaard, Helle; Larsen, Lars Stehr; Seyfarth, Anne Mette; Struve, Tina; Hammerum, A. M.; Kuhn, K. G.; Lambertsen, L. M.; Larsen, A. R.; Laursen, M.; Nielsen, E. M.; Olsen, S. S.; Petersen, A.; Skjøt-Rasmussen, L.; Skov, R. L.; Torpdahl, M.

    DANMAP, 2012. 138 p. (Dansk Veterinærtidsskrift).

    Publication: Research › Report – Annual report year: 2012

  47. Published

    Design and data analysis of experimental trials to test vaccine candidates against zoonotic pathogens in animals: the case of a clinical trial against campylobacter in broilers. / Garcia Clavero, Ana Belén; Bahrndorff, Simon; Hald, Birthe; Hoorfar, Jeffrey; Madsen, M.; Vigre, Håkan.

    In: Expert Review of Vaccines, Vol. 11, No. 10, 2012, p. 1179-1188.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  48. Published

    Development of a Salmonella source-attribution model for evaluating targets in the turkey meat production. : Supporting Publications 2012:EN-259. / Hald, Tine; Pires, Sara Monteiro; de Knegt, Leonardo.

    Mørkhøj, Denmark : European Food Safety Authority, 2012. 35 p.

    Publication: Research - peer-review › Report – Annual report year: 2012

  49. Published

    Diagnostic herd sensitivity using environmental samples. / Vigre, Håkan; Josefsen, Mathilde Hartmann; Seyfarth, Anne Mette; Agersø, Yvonne.

    2012. Abstract from 13th International Symposium on Veterinary Epidemiology and Economics, Maastricht, Netherlands.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  50. Published

    Draft Genome Sequence of the Yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460. / Liu, Xiaoying ; Kaas, Rolf Sommer; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Eukaryotic Cell (Online Edition), Vol. 11, No. 6, 2012, p. 827.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  51. Published

    Effect of Long-Term Freezing and Freeze–Thaw Cycles on Indigenous and Inoculated Microorganisms in Dewatered Blackwater. / Gunnarsdottir, Ragnhildur; Müller, Karoline ; Jensen, Pernille Erland; Jenssen, Petter Deinboll; Villumsen, Arne.

    In: Environmental Science & Technology (Washington), Vol. 46, 2012, p. 12408-12416.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  52. Published

    EFSA Panel on Biological Hazards (BIOHAZ) and EFSA Panel on Contaminants in the Food Chain (CONTAM); Scientific Opinion on the minimum hygiene criteria to be applied to clean seawater and on the public health risks and hygiene criteria for bottled seawater intended for domestic use. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2012. 85 p. (The EFSA Journal; No. 2613, Vol. 10(3)).

    Publication: Research - peer-review › Report – Annual report year: 2012

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