Division of Epidemiology and Microbial Genomics

  1. 2015
  2. Published

    EFFORT: Ecology from farm to fork of microbial drug resistance and transmission. / Ribeiro Duarte, Ana Sofia (Author).

    2015. 5th Nordic One Health Conference, Friibergh, Sweden, 19/03/14.

    Publication: ResearchSound/Visual production (digital) – Annual report year: 2015

  3. Published

    Fitting a distribution to microbial counts: Making sense of zeroes. / Ribeiro Duarte, Ana Sofia; Stockmarr, Anders; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 40-50.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 20677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  6. Published

    Impact of microbial count distributions on human health risk estimates. / Ribeiro Duarte, Ana Sofia; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 195, 2015, p. 48-57.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Risk ranking of pathogens in ready-to-eat unprocessed foods of non-animal origin (FoNAO) in the EU: Initial evaluation using outbreak data (2007-2011).. / Da Silva Felício, M. T.; Hald, Tine; Liebana, E.; Allende, A.; Hugas, M.; Nguyen-The, C.; Johannessen, G. Skoien; Niskanen, T.; Uyttendaele, M.; McLauchlin, J.

    In: International Journal of Food Microbiology, Vol. 195, 2015, p. 9-19.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published
  9. 2014
  10. Published

    Activation and polar sequestration of PopA, a c-di-GMP effector protein involved in Caulobacter crescentus cell cycle control. / Ozaki, Shogo; Schalch-Moser, Annina; Zumthor, Ludwig; Manfredi, Pablo; Ebbensgaard, Anna Elisabeth; Schirmer, Tilman; Jenal, Urs.

    In: Molecular Microbiology, Vol. 94, No. 3, 2014, p. 580-594.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  11. Published
  12. Published

    Annual Report on Zoonoses in Denmark 2013. / Sørensen, Anna Irene Vedel (Editor); Helwigh, Birgitte (Editor); Müller, Luise.

    Søborg : DTU Food, 2014. 69 p. (Annual Report on Zoonoses in Denmark).

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  13. Published

    Antibiotic resistance and resistance genes in Escherichia coli from poultry farms, southwest Nigeria. / Adelowo, Olawale O.; Fagade, Obasola E.; Agersø, Yvonne.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 9, 2014, p. 1103-1112.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    Antimicrobial resistance of zoonotic and commensal bacteria in Europe: The missing link between consumption and resistance in veterinary medicine. / Garcia-Migura, Lourdes; Hendriksen, Rene S.; Fraile, Lorenzo; Aarestrup, Frank Møller.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 1-9.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published
  16. E-pub ahead of print
  17. Published

    Burden of diseases estimates associated to different red meat cooking practices. / Berjia, Firew Lemma; Poulsen, Morten; Nauta, Maarten.

    In: Food and Chemical Toxicology, Vol. 66, 2014, p. 237-244.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published

    Characterization of Extended spectrum beta-lactamases (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of 3rd or 4th generation cephalosporins. / Hammerum, Anette M.; Larsen, Jesper; Dalhoff Andersen, Vibe; Lester, Camilla H; Skytte, Timmy S. Skovgaard; Hansen, Frank ; Olsen, Stefan S.; Mordhorst, Hanne; Skov, Robert L.; Aarestrup, Frank Møller; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published

    Characterization of methicillin-resistant Staphylococcus aureus Sequence Type 398. / Christiansen, Mette Theilgaard; Aarestrup, Frank Møller (Main supervisor); Hasman, Henrik (Supervisor); Agersø, Yvonne (Supervisor).

    Søborg : National Food Institute, Technical University of Denmark, 2014. 204 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  20. Published
  21. Published

    DANMAP 2013 : DANMAP 2013 - Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark. / Agersø, Yvonne; Bager, Flemming; Boel, Jeppe; Helwigh, Birgitte; Borck Høg, Birgitte; Jensen, Lars Bogø; de Knegt, Leonardo; Korsgaard, Helle; Larsen, Lars Stehr; Sørensen, Anna Irene Vedel; Dalby, Tine; Hammerum, Anette M.; Hoffmann, Steen; Gaardbo Kuhn, Katrin; Rhod Larsen, Anders; Laursen, Maja; Nielsen, Eva Møller; Olsen, Stefan S.; Petersen, Andreas; Bagger-Skjøt, Line; Skov, Robert L.; Slotved, Hans-Christian; Torpdahl, Mia.

    Statens Serum Institut, 2014. 106 p.

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  22. Published

    Detection and linkage to mobile genetic elements of tetracycline resistance gene tet(M) in Escherichia coli isolates from pigs. / Jurado-Rabadan, Sonia; de la Fuente, Ricardo; Ruiz-Santa-Quiteria, Jose A.; Orden, Jose A.; de Vries, Lisbeth Elvira; Agersø, Yvonne.

    In: B M C Veterinary Research, Vol. 10, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published

    Diversity and antimicrobial susceptibility of Salmonella enterica serovars isolated from pig farms in Ibadan, Nigeria. / Fashae, Kayode; Hendriksen, Rene S.

    In: Folia Microbiologica, Vol. 59, No. 1, 2014, p. 69-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  25. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on Bioreduction application. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 13 p. (The EFSA Journal; No. 3503, Vol. 11(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  26. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on Carbapenem resistance in food animal ecosystems. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 70 p. (The EFSA Journal; No. 3501, Vol. 11(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  27. Published
  28. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on BSE risk in bovine intestines and mesentery. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 98 p. (The EFSA Journal; No. 3554, Vol. 12(2)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  29. Published
  30. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the evaluation of the safety and efficacy of peroxyacetic acid solutions for reduction of pathogens on poultry carcasses and meat. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 60 p. (The EFSA Journal; No. 3599, Vol. 12(3)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  31. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the public health risks of table eggs due to deterioration and development of pathogens. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 147 p. (The EFSA Journal; No. 3782, Vol. 12(7)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  32. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the public health risks related to the maintenance of the cold chain during storage and transport of meat. Part 1 (meat of domestic ungulates).. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 81 p. (The EFSA Journal; No. 3601, Vol. 12(3)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  33. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards, 2014. Scientific Opinion on the public health risks related to the maintenance of the cold chain during storage and transport of meat. Part 2 (minced meat from all species). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 30 p. (The EFSA Journal; No. 3783, Vol. 12(7)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  34. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the risk posed by pathogens in food of non-animal origin. Part 2 (Salmonella and Norovirus in berries). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 95 p. (The EFSA Journal; No. 3706, Vol. 12(6)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  35. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the risk posed by pathogens in food of non-animal origin. Part 2 (Salmonella and Norovirus in leafy greens eaten raw as salads). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 118 p. (The EFSA Journal; No. 3600, Vol. 12(3)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  36. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the risk posed by pathogens in food of non-animal origin. Part 2 (Salmonella and Norovirus in tomatoes). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 75 p. (The EFSA Journal; No. 3832, Vol. 12(10)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  37. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the risk posed by pathogens in food of non-animal origin. Part 2 (Salmonella in melons). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 77 p. (The EFSA Journal; No. 3831, Vol. 12(10)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  38. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the risk posed by pathogens in food of non-animal origin. Part 2 (Salmonella Yersinia, Shigella and Norovirus in bulb and stem vegetables, and carrots). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 91 p. (The EFSA Journal; No. 3937, Vol. 12(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  39. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the scrapie situation in the EU after 10 years of monitoring and control in sheep and goats. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 155 p. (The EFSA Journal; No. 3781, Vol. 12(7)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  40. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Statement on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 1: Suitability of taxonomic units notified to EFSA until October 2014. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 41 p. (The EFSA Journal; No. 3938, Vol. 12(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  41. Published

    EIP-AGRI Focus Group - Reducing antibiotic use in pig farming : Final Report. / EU report.

    European Commission, 2014. 36 p.

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  42. Published

    Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius. / Issack, Mohammad I.; Hendriksen, Rene S.; Hyytiae-Trees, Eija; Svendsen, Christina Aaby; Mikoleit, Matthew.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 4, 2014, p. 454-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  43. Published

    Evaluation of pre-PCR processing approaches for enumeration of Salmonella enterica in naturally contaminated animal feed. / Schelin, Jenny; Andersson, Gunnar; Vigre, Håkan; Norling, Börje; Häggblom, Per; Hoorfar, Jeffrey; Rådström, Peter; Löfström, Charlotta.

    In: Journal of Applied Microbiology, Vol. 116, No. 1, 2014, p. 167-178.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  45. Published
  46. Published

    Exploring the immediate and long-term impact on bacterial communities in soil amended with animal and urban organic waste fertilizers using pyrosequencing and screening for horizontal transfer of antibiotic resistance. / Riber, Leise; Poulsen, Pernille H. B.; Al-Soud, Waleed A.; Hansen, Lea B. Skov; Bergmark, Lasse; Brejnrod, Asker; Norman, Anders; Hansen, Lars Henrik; Magid, Jakob; Sørensen, Søren J.

    In: F E M S Microbiology Ecology, Vol. 90, No. 1, 2014, p. 206-224.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  47. Published

    Extended-Spectrum-Beta-Lactamases, AmpC Beta-Lactamases and Plasmid Mediated Quinolone Resistance in Klebsiella spp. from Companion Animals in Italy. / Donati, Valentina; Feltrin, Fabiola; Hendriksen, Rene S.; Svendsen, Christina Aaby; Cordaro, Gessica; Garcia-Fernandez, Aurora; Lorenzetti, Serena; Lorenzetti, Raniero; Battisti, Antonio; Franco, Alessia.

    In: PLOS ONE, Vol. 9, No. 3, e90564, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  48. Published

    Finding the Optimum Scenario in Risk-benefit Assessment: An Example on Vitamin D. / Berjia, Firew Lemma; Hoekstra, J.; Verhagen, H.; Poulsen, Morten; Andersen, Rikke; Nauta, Maarten.

    In: European journal of nutrition & food safety, Vol. 4, No. 4, 2014, p. 558-576.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  49. Published

    Genome Sequences of Three Highly Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in Denmark.. / Qin, Yanan; Hasman, Henrik; Aarestrup, Frank Møller; Alwathnani, Hend A.; Rensing, Christopher.

    In: Genome Announcements, Vol. 2, No. 6, e01334-14 , 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  50. Published

    Genome Sequences of Two Copper-Resistant Escherichia coli Strains Isolated from Copper-Fed Pigs.. / Lüthje, Freja L.; Hasman, Henrik; Aarestrup, Frank Møller; Alwathnani, Hend A.; Rensing, Christopher.

    In: Genome Announcements, Vol. 2, No. 6, e01341-14 , 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  51. Published
  52. Published

    Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages. / Deng, Xiangyu; Desai, Prerak T.; den Bakker, Henk C.; Mikoleit, Matthew; Tolar, Beth; Trees, Eija; Hendriksen, Rene S.; Frye, Jonathan G.; Porwollik, Steffen; Weimer, Bart C.; Wiedmann, Martin; Weinstock, George M.; Fields, Patricia I.; McClelland, Michael.

    In: EMERGING INFECTIOUS DISEASES, Vol. 20, No. 9, 2014, p. 1481-1489.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

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