Division of Epidemiology and Microbial Genomics

  1. 2015
  2. Published

    Antibiotika til mink fra 2007-2012. / Jensen, Vibeke Frøkjær; Sommer, Helle Mølgaard; Stuve, Tina; Clausen, Jesper ; Chriél, Mariann.

    In: Dansk Pelsdyravl, No. 2, 2015, p. 34-37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published
  4. Published

    Draft Genome Sequences of Sanguibacteroides justesenii, gen. nov., sp. nov., Strains OUH 308042T (= ATCC BAA-2681T) and OUH 334697 (= ATCC BAA-2682), Isolated from Blood Cultures from Two Different Patients. / Sydenham, Thomas Vognbjerg; Hasman, Henrik; Justesen, Ulrik Stenz.

    In: Genome Announcements, Vol. 3, No. 2, 2015, p. e00005-15 .

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    EFFORT: Ecology from farm to fork of microbial drug resistance and transmission. / Ribeiro Duarte, Ana Sofia (Author).

    2015. 5th Nordic One Health Conference, Friibergh, Sweden, 19/03/2014.

    Publication: ResearchSound/Visual production (digital) – Annual report year: 2015

  6. Published

    Fitting a distribution to microbial counts: Making sense of zeroes. / Ribeiro Duarte, Ana Sofia; Stockmarr, Anders; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 40-50.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    Impact of microbial count distributions on human health risk estimates. / Ribeiro Duarte, Ana Sofia; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 195, 2015, p. 48-57.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published
  11. Published
  12. Published

    Overvågning og kontrol af Salmonella i svinebesætninger og svinekødsproduktion : Status 2012 og 2013. Rapport nr. 15. / Teknikergruppen for Salmonellahandlingsplan IV i svin.

    DTU Fødevareinstituttet, Fødevarestyrelsen, Landbrug og Fødevarer, Teknologisk Institut, Danske Slagtermestres Landsforening og Eurofins| Steins Laboratorium, 2015. 39 p.

    Publication: Commissioned - peer-reviewReport – Annual report year: 2015

  13. Published

    Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities. / Moran-Gilad, Jacob; Sintchenko, Vitali; Karlsmose Pedersen, Susanne; Wolfgang, William J.; Pettengill, James; Strain, Errol; Hendriksen, Rene S.

    In: B M C Infectious Diseases, Vol. 15, 174, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published
  15. Published

    Ringtest for identifikation og resistensbestemmelse af mastitispatogener 2014. / Cavaco, Lina; Lorenzen, Bjørn; Jensen, Jacob Dyring; Nielsen, Hanne Nørgaard; Butters, Jytte; Dahl Larsen, Heidi Kristina; Aarestrup, Frank Møller; Hendriksen, Rene S.

    Kgs. Lyngby : DTU Fødevareinstituttet, 2015. 14 p.

    Publication: ResearchReport – Annual report year: 2015

  16. Published
  17. Published

    Risk-based microbiological criteria for Campylobacter in broiler meat: A comparison of two approaches. / Nauta, Maarten; Andersen, Jens Kirk; Tuominen, Pirkko; Ranta, Jukka; Lindqvist, Roland.

    In: Food Control, Vol. 53, 2015, p. 177-184.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  18. Published

    Risk ranking of pathogens in ready-to-eat unprocessed foods of non-animal origin (FoNAO) in the EU: Initial evaluation using outbreak data (2007-2011).. / Da Silva Felício, M. T.; Hald, Tine; Liebana, E.; Allende, A.; Hugas, M.; Nguyen-The, C.; Johannessen, G. Skoien; Niskanen, T.; Uyttendaele, M.; McLauchlin, J.

    In: International Journal of Food Microbiology, Vol. 195, 2015, p. 9-19.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. Published

    Separate norovirus outbreaks linked to one source of imported frozen raspberries by molecular analysis, Denmark, 2010–2011. / Müller, L.; Schultz, Anna Charlotte; Fonager, J.; Jensen, T.; Lisby, M; Hindsdal, K.; Krusell, L.; Eshøj, A.; T. Møller, L.; Porsbo, Lone Jannok; E. Böttiger, B.; Kuhn, K. ; Engberg, J.; Ethelberg, S.

    In: Epidemiology and Infection, Vol. 143, No. 11, 2015, p. 2299-2307.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    The 16th EURL-AR Proficiency Test - Enterococci, Staphylococci and E. coli 2014. / Cavaco, Lina; Karlsmose Pedersen, Susanne; Hendriksen, Rene S.; Aarestrup, Frank Møller.

    Lyngby : National Food Institute, Technical University of Denmark, 2015. 24 p.

    Publication: Research - peer-reviewReport – Annual report year: 2015

  21. Published

    The 17th EURL-AR Proficiency Test Salmonella, Campylobacter and genotypic characterisation 2014. / Karlsmose Pedersen, Susanne; Cavaco, Lina; Hendriksen, Rene S.; Aarestrup, Frank Møller.

    Lyngby : National Food Institute, Technical University of Denmark, 2015. 18 p.

    Publication: Research - peer-reviewReport – Annual report year: 2015

  22. Published
  23. Published

    The impact of screening-test negative samples not enumerated by MPN. / Corbellini, Luis Gustavo; Ribeiro Duarte, Ana Sofia; de Knegt, Leonardo; Silva, Luis Eduardo da; Cardoso, Marisa; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 205, 2015, p. 1-6.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published
  25. Published
  26. Published
  27. Published

    Typhoid fever. / Wain, John; Hendriksen, Rene S.; Mikoleit, Matthew L.; Keddy, Karen H.; Ochiai, R. Leon.

    In: Lancet, Vol. 385, No. 9973, 2015, p. 1136-1145.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published
  29. 2014
  30. Published

    Activation and polar sequestration of PopA, a c-di-GMP effector protein involved in Caulobacter crescentus cell cycle control. / Ozaki, Shogo; Schalch-Moser, Annina; Zumthor, Ludwig; Manfredi, Pablo; Ebbensgaard, Anna Elisabeth; Schirmer, Tilman; Jenal, Urs.

    In: Molecular Microbiology, Vol. 94, No. 3, 2014, p. 580-594.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  31. Published
  32. Published

    Annual Report on Zoonoses in Denmark 2013. / Sørensen, Anna Irene Vedel (Editor); Helwigh, Birgitte (Editor); Müller, Luise.

    Søborg : DTU Food, 2014. 69 p. (Annual Report on Zoonoses in Denmark).

    Publication: ResearchReport – Annual report year: 2014

  33. Published

    Antibiotic resistance and resistance genes in Escherichia coli from poultry farms, southwest Nigeria. / Adelowo, Olawale O.; Fagade, Obasola E.; Agersø, Yvonne.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 9, 2014, p. 1103-1112.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  34. Published

    Antimicrobial resistance of zoonotic and commensal bacteria in Europe: The missing link between consumption and resistance in veterinary medicine. / Garcia-Migura, Lourdes; Hendriksen, Rene S.; Fraile, Lorenzo; Aarestrup, Frank Møller.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 1-9.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  35. Published
  36. Published

    Burden of diseases estimates associated to different red meat cooking practices. / Berjia, Firew Lemma; Poulsen, Morten; Nauta, Maarten.

    In: Food and Chemical Toxicology, Vol. 66, 2014, p. 237-244.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  37. Published

    Characterization of Extended spectrum beta-lactamases (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of 3rd or 4th generation cephalosporins. / Hammerum, Anette M.; Larsen, Jesper; Dalhoff Andersen, Vibe; Lester, Camilla H; Skytte, Timmy S. Skovgaard; Hansen, Frank ; Olsen, Stefan S.; Mordhorst, Hanne; Skov, Robert L.; Aarestrup, Frank Møller; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  38. Published

    Characterization of methicillin-resistant Staphylococcus aureus Sequence Type 398. / Christiansen, Mette Theilgaard; Aarestrup, Frank Møller (Main supervisor); Hasman, Henrik (Supervisor); Agersø, Yvonne (Supervisor).

    Søborg : National Food Institute, Technical University of Denmark, 2014. 204 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  39. Published
  40. Published

    DANMAP 2013 : Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark. / Agersø, Yvonne; Bager, Flemming; Boel, Jeppe; Helwigh, Birgitte; Borck Høg, Birgitte; Jensen, Lars Bogø; de Knegt, Leonardo; Korsgaard, Helle; Larsen, Lars Stehr; Sørensen, Anna Irene Vedel; Dalby, Tine; Hammerum, Anette M.; Hoffmann, Steen; Gaardbo Kuhn, Katrin; Rhod Larsen, Anders; Laursen, Maja; Nielsen, Eva Møller; Olsen, Stefan S.; Petersen, Andreas; Bagger-Skjøt, Line; Skov, Robert L.; Slotved, Hans-Christian; Torpdahl, Mia.

    Statens Serum Institut, 2014. 106 p.

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  41. Published

    Detection and linkage to mobile genetic elements of tetracycline resistance gene tet(M) in Escherichia coli isolates from pigs. / Jurado-Rabadan, Sonia; de la Fuente, Ricardo; Ruiz-Santa-Quiteria, Jose A.; Orden, Jose A.; de Vries, Lisbeth Elvira; Agersø, Yvonne.

    In: B M C Veterinary Research, Vol. 10, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  42. Published

    Diversity and antimicrobial susceptibility of Salmonella enterica serovars isolated from pig farms in Ibadan, Nigeria. / Fashae, Kayode; Hendriksen, Rene S.

    In: Folia Microbiologica, Vol. 59, No. 1, 2014, p. 69-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  43. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on Bioreduction application. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 13 p. (The EFSA Journal; No. 3503, Vol. 11(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  45. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on Carbapenem resistance in food animal ecosystems. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 70 p. (The EFSA Journal; No. 3501, Vol. 11(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  46. Published
  47. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on BSE risk in bovine intestines and mesentery. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 98 p. (The EFSA Journal; No. 3554, Vol. 12(2)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  48. Published
  49. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the evaluation of the safety and efficacy of peroxyacetic acid solutions for reduction of pathogens on poultry carcasses and meat. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 60 p. (The EFSA Journal; No. 3599, Vol. 12(3)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  50. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the public health risks of table eggs due to deterioration and development of pathogens. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 147 p. (The EFSA Journal; No. 3782, Vol. 12(7)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  51. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2014. Scientific Opinion on the public health risks related to the maintenance of the cold chain during storage and transport of meat. Part 1 (meat of domestic ungulates).. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 81 p. (The EFSA Journal; No. 3601, Vol. 12(3)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  52. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards, 2014. Scientific Opinion on the public health risks related to the maintenance of the cold chain during storage and transport of meat. Part 2 (minced meat from all species). / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 30 p. (The EFSA Journal; No. 3783, Vol. 12(7)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

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