Division of Epidemiology and Microbial Genomics

  1. 2015
  2. Published

    EFFORT: Ecology from farm to fork of microbial drug resistance and transmission. / Ribeiro Duarte, Ana Sofia (Author).

    2015. 5th Nordic One Health Conference, Friibergh, Sweden, 19/03/14.

    Publication: ResearchSound/Visual production (digital) – Annual report year: 2015

  3. Published

    Fitting a distribution to microbial counts: Making sense of zeroes. / Ribeiro Duarte, Ana Sofia; Stockmarr, Anders; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 40-50.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 20677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  6. Published

    Impact of microbial count distributions on human health risk estimates. / Ribeiro Duarte, Ana Sofia; Nauta, Maarten.

    In: International Journal of Food Microbiology, Vol. 195, 2015, p. 48-57.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Risk ranking of pathogens in ready-to-eat unprocessed foods of non-animal origin (FoNAO) in the EU: Initial evaluation using outbreak data (2007-2011).. / Da Silva Felício, M. T.; Hald, Tine; Liebana, E.; Allende, A.; Hugas, M.; Nguyen-The, C.; Johannessen, G. Skoien; Niskanen, T.; Uyttendaele, M.; McLauchlin, J.

    In: International Journal of Food Microbiology, Vol. 195, 2015, p. 9-19.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published
  9. 2014
  10. Published

    Activation and polar sequestration of PopA, a c-di-GMP effector protein involved in Caulobacter crescentus cell cycle control. / Ozaki, Shogo; Schalch-Moser, Annina; Zumthor, Ludwig; Manfredi, Pablo; Ebbensgaard, Anna Elisabeth; Schirmer, Tilman; Jenal, Urs.

    In: Molecular Microbiology, Vol. 94, No. 3, 2014, p. 580-594.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  11. Published
  12. Published

    Annual Report on Zoonoses in Denmark 2013. / Sørensen, Anna Irene Vedel (Editor); Helwigh, Birgitte (Editor); Müller, Luise.

    Søborg : DTU Food, 2014. 69 p. (Annual Report on Zoonoses in Denmark).

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  13. Published

    Antibiotic resistance and resistance genes in Escherichia coli from poultry farms, southwest Nigeria. / Adelowo, Olawale O.; Fagade, Obasola E.; Agersø, Yvonne.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 9, 2014, p. 1103-1112.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    Antimicrobial resistance of zoonotic and commensal bacteria in Europe: The missing link between consumption and resistance in veterinary medicine. / Garcia-Migura, Lourdes; Hendriksen, Rene S.; Fraile, Lorenzo; Aarestrup, Frank Møller.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 1-9.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published
  16. E-pub ahead of print
  17. Published

    Burden of diseases estimates associated to different red meat cooking practices. / Berjia, Firew Lemma; Poulsen, Morten; Nauta, Maarten.

    In: Food and Chemical Toxicology, Vol. 66, 2014, p. 237-244.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published

    Characterization of Extended spectrum beta-lactamases (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of 3rd or 4th generation cephalosporins. / Hammerum, Anette M.; Larsen, Jesper; Dalhoff Andersen, Vibe; Lester, Camilla H; Skytte, Timmy S. Skovgaard; Hansen, Frank ; Olsen, Stefan S.; Mordhorst, Hanne; Skov, Robert L.; Aarestrup, Frank Møller; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published

    Characterization of methicillin-resistant Staphylococcus aureus Sequence Type 398. / Christiansen, Mette Theilgaard; Aarestrup, Frank Møller (Main supervisor); Hasman, Henrik (Supervisor); Agersø, Yvonne (Supervisor).

    Søborg : National Food Institute, Technical University of Denmark, 2014. 204 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  20. Published
  21. Published

    DANMAP 2013 : DANMAP 2013 - Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark. / Agersø, Yvonne; Bager, Flemming; Boel, Jeppe; Helwigh, Birgitte; Borck Høg, Birgitte; Jensen, Lars Bogø; de Knegt, Leonardo; Korsgaard, Helle; Larsen, Lars Stehr; Sørensen, Anna Irene Vedel; Dalby, Tine; Hammerum, Anette M.; Hoffmann, Steen; Gaardbo Kuhn, Katrin; Rhod Larsen, Anders; Laursen, Maja; Nielsen, Eva Møller; Olsen, Stefan S.; Petersen, Andreas; Bagger-Skjøt, Line; Skov, Robert L.; Slotved, Hans-Christian; Torpdahl, Mia.

    Statens Serum Institut, 2014. 106 p.

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  22. Published

    Detection and linkage to mobile genetic elements of tetracycline resistance gene tet(M) in Escherichia coli isolates from pigs. / Jurado-Rabadan, Sonia; de la Fuente, Ricardo; Ruiz-Santa-Quiteria, Jose A.; Orden, Jose A.; de Vries, Lisbeth Elvira; Agersø, Yvonne.

    In: B M C Veterinary Research, Vol. 10, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published

    Diversity and antimicrobial susceptibility of Salmonella enterica serovars isolated from pig farms in Ibadan, Nigeria. / Fashae, Kayode; Hendriksen, Rene S.

    In: Folia Microbiologica, Vol. 59, No. 1, 2014, p. 69-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  25. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on Bioreduction application. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 13 p. (The EFSA Journal; No. 3503, Vol. 11(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  26. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on Carbapenem resistance in food animal ecosystems. / EFSA Publication.

    Parma, Italy : Europen Food Safety Authority, 2014. 70 p. (The EFSA Journal; No. 3501, Vol. 11(12)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2014

  27. Published
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