Division of Epidemiology and Microbial Genomics

  1. 2014
  2. Published
  3. Published

    Annual Report on Zoonoses in Denmark 2013. / Sørensen, Anna Irene Vedel (Editor); Helwigh, Birgitte (Editor); Müller, Luise.

    Søborg : DTU Food, 2014. 69 p. (Annual Report on Zoonoses in Denmark).

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  4. Published

    Antimicrobial resistance of zoonotic and commensal bacteria in Europe: The missing link between consumption and resistance in veterinary medicine. / Garcia-Migura, Lourdes; Hendriksen, Rene S.; Fraile, Lorenzo; Aarestrup, Frank Møller.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 1-9.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  5. Published
  6. E-pub ahead of print
  7. Published

    Burden of diseases estimates associated to different red meat cooking practices. / Berjia, Firew Lemma; Poulsen, Morten; Nauta, Maarten.

    In: Food and Chemical Toxicology, Vol. 66, 2014, p. 237-244.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  8. Published

    Characterization of Extended spectrum beta-lactamases (ESBL)-producing Escherichia coli obtained from Danish pigs, pig farmers and their families from farms with high or no consumption of 3rd or 4th generation cephalosporins. / Hammerum, Anette M.; Larsen, Jesper; Dalhoff Andersen, Vibe; Lester, Camilla H; Skytte, Timmy S. Skovgaard; Hansen, Frank ; Olsen, Stefan S.; Mordhorst, Hanne; Skov, Robert L.; Aarestrup, Frank Møller; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Published

    Characterization of methicillin-resistant Staphylococcus aureus Sequence Type 398. / Christiansen, Mette Theilgaard; Aarestrup, Frank Møller (Main supervisor); Hasman, Henrik (Supervisor); Agersø, Yvonne (Supervisor).

    Søborg : National Food Institute, Technical University of Denmark, 2014. 204 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  10. Published
  11. Published

    Diversity and antimicrobial susceptibility of Salmonella enterica serovars isolated from pig farms in Ibadan, Nigeria. / Fashae, Kayode; Hendriksen, Rene S.

    In: Folia Microbiologica, Vol. 59, No. 1, 2014, p. 69-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  12. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  13. Published

    Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius. / Issack, Mohammad I.; Hendriksen, Rene S.; Hyytiae-Trees, Eija; Svendsen, Christina Aaby; Mikoleit, Matthew.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 4, 2014, p. 454-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    Evaluation of pre-PCR processing approaches for enumeration of Salmonella enterica in naturally contaminated animal feed. / Schelin, Jenny; Andersson, Gunnar; Vigre, Håkan; Norling, Börje; Häggblom, Per; Hoorfar, Jeffrey; Rådström, Peter; Löfström, Charlotta.

    In: Journal of Applied Microbiology, Vol. 116, No. 1, 2014, p. 167-178.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  16. Published
  17. Published

    Extended-Spectrum-Beta-Lactamases, AmpC Beta-Lactamases and Plasmid Mediated Quinolone Resistance in Klebsiella spp. from Companion Animals in Italy. / Donati, Valentina; Feltrin, Fabiola; Hendriksen, Rene S.; Svendsen, Christina Aaby; Cordaro, Gessica; Garcia-Fernandez, Aurora; Lorenzetti, Serena; Lorenzetti, Raniero; Battisti, Antonio; Franco, Alessia.

    In: PLOS ONE, Vol. 9, No. 3, e90564, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published
  19. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  20. E-pub ahead of print

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  21. In press

    Microbiological Safety of Meat: Salmonella spp.. / Wingstrand, Anne; Aabo, Søren.

    Encyclopedia of Meat Sciences 2e. ed. / Carrick Devine; Michael Dikemann. Vol. 2 Elsevier Science, 2014. p. 367-375.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  22. Published

    Persistence of fluoroquinolone-resistant Salmonella enterica serovar Kentucky from poultry and poultry sources in Nigeria. / Raufu, Ibrahim A.; Fashae, Kayode; Ameh, James A.; Ambali, AbdulGaniyu; Ogunsola, Folashade T.; Coker, Akitoye O.; Hendriksen, Rene S.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 3, 2014, p. 384-388.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published

    Phylogenetic Analysis of Staphylococcus aureus CC398 Reveals a Sub-Lineage Epidemiologically Associated with Infections in Horses. / Abdelbary, Mohamed M. H.; Wittenberg, Anne; Cuny, Christiane; Layer, Franziska; Kurt, Kevin; Wieler, Lothar H.; Walther, Birgit; Skov, Robert; Larsen, Jesper; Hasman, Henrik; Fitzgerald, J. Ross; Smith, Tara C.; Wagenaar, J. A.; Pantosti, Annalisa; Hallin, Marie; Struelens, Marc J.; Edwards, Giles; Boese, R.; Nuebel, Ulrich; Witte, Wolfgang.

    In: PLOS ONE, Vol. 9, No. 2, e88083, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. Published

    Projekt 15: Tilpasning af den offentlige kontrol - risikobaseret kødkontrol. / Bollerslev, Anne Mette; Hansen, Tina Beck; Hald, Tine; Nauta, Maarten; Aabo, Søren.

    Søborg : DTU Fødevareinstituttet, 2014. 33 p.

    Publication: CommissionedReport – Annual report year: 2014

  25. Published

    Projekt 5 - Udvikling af proceshygiejnekriterier. / Bollerslev, Anne Mette; Hansen, Tina Beck; Nauta, Maarten; Aabo, Søren.

    Søborg : DTU Fødevareinstituttet, 2014. 15 p.

    Publication: CommissionedReport – Annual report year: 2014

  26. Published
  27. Published
  28. Published
  29. Published

    Report of the 5th External Quality Assurance System on Identification and Typing of Methicillin resistant Staphylococcus aureus (MRSA), 2013. / Cavaco, Lina; Karlsmose, Susanne; Hendriksen, Rene S.; Aarestrup, Frank Møller.

    Kgs. Lyngby : National Food Institute, Technical University of Denmark, 2014. 29 p.

    Publication: Research - peer-reviewReport – Annual report year: 2014

  30. Published

    Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms. / Kaas, Rolf Sommer; Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller; Lund, Ole.

    In: PLOS ONE, Vol. 9, No. 8, e104984, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  31. Published

    Source attribution of human campylobacteriosis in Denmark. / Boysen, Louise; Rosenquist, Hanne; Rosenquist, J. T.; Nielsen, E. M.; Sørensen, Gitte; Nordentoft, Steen; Hald, Tine.

    In: Epidemiology and Infection, Vol. 142, No. 8, 2014, p. 1599-1608.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  32. E-pub ahead of print

    Source Attribution of Human Salmonellosis: An Overview of Methods and Estimates. / Pires, Sara Monteiro; Vieira, Antonio R.; Hald, Tine; Cole, Dana.

    In: Foodborne Pathogens and Disease, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  33. Published

    Spatio-temporal analysis of Salmonella surveillance data in Thailand. / Coutinho Calado Domingues, Ana Rita; Vieira, Antonio; Hendriksen, Rene S.; Pulsrikarn, C.; Aarestrup, Frank Møller.

    In: Epidemiology and Infection, Vol. 142, No. 8, 2014, p. 1614-1624.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  34. Published
  35. Accepted
  36. Published

    The 14th EURL-AR Proficiency Test - enterococci, staphylococci and E. coli 2013. / Cavaco, Lina; Karlsmose, Susanne; Hendriksen, Rene S.; Aarestrup, Frank Møller.

    1 ed. Kgs. Lyngby : National Food Institute, Technical University of Denmark, 2014. 95 p.

    Publication: Research - peer-reviewReport – Annual report year: 2014

  37. Published

    The 15th EURL-AR Proficiency Test Salmonella, Campylobacter and genotypic characterisation 2013. / Karlsmose, Susanne; Cavaco, Lina; Hendriksen, Rene S.; Aarestrup, Frank Møller.

    1 ed. Kgs. Lyngby : National Food Institute, Technical University of Denmark, 2014. 69 p.

    Publication: Research - peer-reviewReport – Annual report year: 2014

  38. Published

    The External Quality Assurance System of the WHO Global Foodborne Infections Network: Year 2012. / Hendriksen, Rene S.; Karlsmose, Susanne; Jensen, Arne Bent; Aarestrup, Frank Møller.

    Lyngby : National Food Institute, Technical University of Denmark, 2014. 27 p.

    Publication: Research - peer-reviewReport – Annual report year: 2014

  39. Published

    The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313. / Herrero-Fresno, Ana; Wallrodt, Inke; Leekitcharoenphon, Pimlapas; Olsen, John Elmerdahl; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: PLOS ONE, Vol. 9, No. 1, e84566, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  40. Published

    TRiMiCri Tutorial - Tool for evaluation of Rissk based Microbiological Criteria : TRiMiCri. / Nauta, Maarten; Lund, Jan.

    Søborg : National Food Institute, Technical University of Denmark, 2014. 33 p.

    Publication: Research - peer-reviewReport – Annual report year: 2014

  41. E-pub ahead of print
  42. 2013
  43. Published

    A brief multi-disciplinary review on antimicrobial resistance in medicine and its linkage to the global environmental microbiota.. / Cantas, L.; Shah, Syed Q A; Cavaco, Lina; Manaia, C. M.; Walsh, F.; Popowska, M.; Garelick, H.; Bürgmann, H.; Sørum, H.

    In: Frontiers in Microbiology, Vol. 4, 2013, p. 96.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  44. Published

    Active Ulcerative Colitis is associated with low prevalence of Blastocystis and Dientamoeba fragilis infection. / Munk Petersen, Andreas; Rune Stensvold, Christen; Mirsepasi, Hengameh; Engberg, Jørgen; Friis-Møller, Alice; Porsbo, Lone Jannok; Hammerum, Anette M.; Nordgaard-Lassen, Inge; Vedel Nielsen, Henrik; Angeliki Krogfelt, Karen.

    In: Scandinavian Journal of Gastroenterology, Vol. 48, No. 5, 2013, p. 638-639.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  45. Published

    A Danish Salmonella Bareilly outbreak investigated by the use of whole genome sequencing. / Torpdahl, M.; Kiil, K.; Litrup, E.; Sørensen, Gitte; Aarestrup, Frank Møller.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 215.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  46. Published

    A long-lasting outbreak of Salmonella Typhimurium U323 associated with several pork products, Denmark, 2010. / Kuhn, K. G. ; Sørensen, Gitte; Torpdahl, M.; Jensen, T.; Gubbels, S.; Bjergager, G. O.; Wingstrand, Anne; Porsbo, Lone Jannok; Ethelberg, S.

    In: Epidemiology and Infection, Vol. 141, No. 2, 2013, p. 260-268.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  47. Published
  48. Published
  49. Published

    Animal and public health surveillance of infectious diseases. / Aarestrup, Frank Møller.

    Med-Vet-Net Association International Scientific Conference DTU, Lyngby, Denmark, 24-25 June 2013: Abstract Book. Lyngby, 2013. p. 13-14.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  50. Published

    Annual Report on Zoonoses in Denmark 2012. / Helwigh, Birgitte.

    The National Food Institute, Technical University of Denmark, 2013. 72 p. (Annual Report on Zoonoses in Denmark).

    Publication: Research - peer-reviewReport – Annual report year: 2013

  51. Published

    Antibiotikaresistens. / Agersø, Yvonne.

    Review over resultater af Fødevarestyrelsens CKL projekter 2000-2010. Søborg : Danmarks Tekniske Universitet, Fødevareinstituttet, 2013. p. 49-50.

    Publication: ResearchBook chapter – Annual report year: 2013

  52. Published

    Antimicrobial resistance and molecular epidemiology of streptococci from bovine mastitis. / Rato, Márcia G.; Bexiga, Ricardo; Florindo, Carlos; Cavaco, Lina M.; Vilela, Cristina L.; Santos-Sanches, Ilda.

    In: Veterinary Microbiology, Vol. 161, No. 3-4, 2013, p. 286-294.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  53. Published

    Assessing the Applicability of Currently Available Methods for Attributing Foodborne Disease to Sources, Including Food and Food Commodities. / Pires, Sara Monteiro.

    In: Foodborne Pathogens and Disease, Vol. 10, No. 3, 2013, p. 206-213.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  54. Published

    Attributing foodborne salmonellosis in humans to animal reservoirs in the European Union using a multi-country stochastic mode. / de Knegt, Leonardo; Pires, Sara Monteiro; Hald, Tine.

    Med-Vet-Net Association International Scientific Conference DTU, Lyngby, Denmark, 24-25 June 2013: Abstract Book. Lyngby, 2013. p. 51.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  55. Published

    Bayesian predictive risk modeling of microbial criteria for Campylobacter in broilers. / Nauta, Maarten; Ranta, J.; Mikkelä, A.; Tuominen, P.

    2013. Poster session presented at 29th European Meeting of Statisticians, Budapest, Hungary.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  56. Published
  57. Published

    Campylobacter vaccination of poultry: Clinical trials, quantitative microbiological methods and decision support tools for the control of Campylobacter in poultry. / Garcia Clavero, Ana Belén; Vigre, Håkan (Main supervisor); Læsø Madsen, Anders; Christensen, Laurids Siig.

    Søborg : National Food Institute, Technical University of Denmark, 2013. 170 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  58. Published
  59. Published

    Characterization of IncN plasmids carrying blaCTX-M-1 and qnr genes in Escherichia coli and Salmonella from animals, the environment and humans. / Dolejska, Monika; Villa, Laura; Hasman, Henrik; Hansen, Lars; Carattoli, Alessandra.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 2, 2013, p. 333-339.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  60. Published

    CLK review - Campylobacter. / Rosenquist, Hanne; Boysen, Louise.

    Review over resultater af Fødevarestyrelsens CKL projekter 2000-2010. Søborg : Danmarks Tekniske Universitet, Fødevareinstituttet, 2013. p. 4-20.

    Publication: ResearchBook chapter – Annual report year: 2013

  61. Published

    Community incidence of pathogen-specific gastroenteritis: reconstructing the surveillance pyramid for seven pathogens in seven European Union member states. / Haagsma, J. A.; Geenen, P. L.; Ethelberg, S.; Fetsch, A.; Hansdotter, F.; Jansen, A.; Korsgaard, Helle; O'Brien, S. J.; Scavia, G.; Spitznagel, H.; Stefanoff, P.; Tam, C. C.; Havelaar, A. H.

    In: Epidemiology and Infection, Vol. 141, No. 8, 2013, p. 1625-1639.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  62. Published

    Comparing antimicrobial exposure based on sales data. / Bondt, Nico; Jensen, Vibeke Frøkjær; Puister-Jansen, Linda F.; van Geijlswijk, Ingeborg M.

    In: Preventive Veterinary Medicine, Vol. 108, No. 1, 2013, p. 10-20.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  63. Published
  64. Published

    Comparison of typing by whole genome sequencing (WGS) and pulsed field gel electrophoresis (PFGE) of isolates from a hospital outbreak with a CTX-M-15 producing Klebsiella pneumoniae. / Hansen, D. S.; Kaas, Rolf Sommer; Nielsen, E. M.; Aarestrup, Frank Møller; Hasman, Henrik.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 154.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  65. Published

    DANMAP 2012 : DANMAP 2012 - Use of antimicrobial agents and occurrence of antimicrobial resistance in bacteria from food animals, food and humans in Denmark . / Agersø, Yvonne; Dalhoff Andersen, Vibe; Helwigh, Birgitte; Borck Høg, Birgitte; Jensen, Lars Bogø; Jensen, Vibeke Frøkjær; Korsgaard, Helle; Larsen, Lars Stehr; Pedersen, Karl; Seyfarth, Anne Mette; Dalby, Tine; Hammerum, Anette M.; Hoffmann, Steen; Gaardbo Kuhn, Katrin; Larsen, Anders Rhod; Laursen, Maja; Møller Nielsen, Eva ; Olsen, Stefan S.; Petersen, Andreas; Skjøt-Rasmussen, Line; Skov, Robert L.; Slotved, Hans-Christian; Torpdahl, Mia.

    DANMAP, 2013. 118 p. (Dansk Veterinærtidsskrift).

    Publication: ResearchReport – Annual report year: 2013

  66. Published

    Detection of a Shiga toxin- and extended-spectrum-β-lactamase-producing Escherichia coli O157:H7 human clinical isolate. / Torpdahl, Mia; Nielsen, Eva M.; Scheutz, Flemming; Olesen, Bente; Hansen, Dennis S.; Hasman, Henrik.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 5, 2013, p. 1203-1204.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  67. Published
  68. Published
  69. Published

    Dissemination of clonal Salmonella enterica serovar Typhimurium isolates causing salmonellosis in Mauritius. / Issack, M. I.; Migura, Lourdes Garcia; Ramsamy, Veemala D.; Svendsen, Christina Aaby; Pornruangwong, Srirat ; Pulsrikarn, Chaiwat ; Hendriksen, Rene S.

    In: Foodborne Pathogens and Disease, Vol. 10, No. 7, 2013, p. 618-623.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  70. Published

    Effects of decontamination at varying contamination levels of Campylobacter jejuni on broiler meat. / Boysen, Louise; Wechter, Naja Strandby; Rosenquist, Hanne.

    In: Poultry Science, Vol. 92, No. 5, 2013, p. 1425-1429.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  71. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on the public health hazards to be covered by inspection of meat (bovine animals).. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 261 p. (The EFSA Journal; No. 3266, Vol. 11(6)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  72. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards), 2013. Scientific Opinion on the public health hazards to be covered by inspection of meat from farmed game. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 181 p. (The EFSA Journal; No. 3264, Vol. 11(6)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  73. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biological Hazards, 2013. Scientific Opinion on the public health hazards to be covered by inspection of meat from sheep and goats.. / EFSA publication.

    Palma, Italy : European Food Safety Authority, 2013. 186 p. (The EFSA Journal; No. 3265, Vol. 11(6)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  74. Published

    EFSA BIOHAZ Panel (EFSA Panel on Biologicial Hazards), 2013. Scientific Opinion on the public health hazards to be covered by inspection of meat (solipeds). / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 161 p. (The EFSA Journal; No. 3263, Vol. 11(6)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  75. Published

    EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on the public health risks related to mechanically separated meat (MSM) derived from poultry and swine. / EFSA Publication.

    Parma, Italy : European Food Safety Authority, 2013. 78 p. (The EFSA Journal; No. 3137, Vol. 11(3)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  76. Published

    EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on the risk of transmission of classical scrapie via in vivo derived embryo transfer in ovine animals. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 15 p. (The EFSA Journal; No. 3080, Vol. 11(2)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  77. Published

    EFSA Panel on Biological Hazards (BIOHAZ); Scientific Opinion on VTEC-seropathotype and scientific criteria regarding pathogenicity assessment. / EFSA publication.

    Parma, Italy : European Food Safety Authority, 2013. 106 p. (The EFSA Journal; No. 3138, Vol. 11(4)).

    Publication: Commissioned - peer-reviewReport – Annual report year: 2013

  78. Published

    Escherichia coli as indicator of the human Salmonella risk caused by consumption of pork. / Bollerslev, Anne Mette; Nauta, Maarten; Hald, Tine; Hansen, Tina Beck; Aabo, Søren.

    Salmonelle and Salmonellosis: Abstract book. ed. / Pierre Colin; Genevieve Clement. Saint-Malo, France, 2013. p. 354-356 36687943.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  79. Published

    Establishment of Risk based microbiological criteria in the Nordic countries: A case study on Campylobacter in broiler meat.. / Nauta, Maarten.

    National Food Institute, Technical University of Denmark, 2013. 87 p.

    Publication: ResearchReport – Annual report year: 2013

  80. Published

    Estimating the true incidence of campylobacteriosis and salmonellosis in the European Union, 2009. / Havelaar, A. H.; Ivarsson, S.; Lofdahl, M.; Nauta, Maarten.

    In: Epidemiology and Infection, Vol. 141, No. 2, 2013, p. 293-302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  81. Published

    Evaluation of pre-PCR processing approaches for enumeration of Salmonella enterica in naturally contaminated animal feed. / Löfström, Charlotta; Schelin, J.; Andersson, G.; Vigre, Håkan; Norling, B.; Häggblom, P.; Hoorfar, Jeffrey; Rådström, P.

    2013. Poster session presented at MedVetNet Association International Scientific Conference 2013, Lyngby, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  82. Published

    Evaluation of pre-PCR processing approaches for enumeration of Salmonella enterica in naturally contaminated animal feed. / Löfström, Charlotta; Schelin, Jenny; Anderson, Gunnar; Vigre, Håkan; Norling, Börje; Häggblom, Per; Hoorfar, Jeffrey; Rådström, Peter.

    Med-Vet-Net Association International Scientific Conference DTU, Lyngby, Denmark, 24-25 June 2013: Abstract Book. Lyngby, 2013. p. 29.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  83. Published

    External quality assurance system (EQAS) for identification of mastitis pathogens in Denmark from 2006 to 2011. / Karlsmose, Susanne; Kunstmann, L.; Rundsten, Carsten Friis; Krogh, K.; Larsen, H.K.D.; Jensen, Arne Bent; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: Preventive Veterinary Medicine, Vol. 109, No. 3-4, 2013, p. 271-277.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  84. Published

    Extremely Drug-Resistant Salmonella enterica Serovar Senftenberg Infections in Patients in Zambia.. / Hendriksen, Rene S.; Joensen, Katrine Grimstrup; Lukwesa-Musyani, Chileshe; Kalondaa, Annie; Leekitcharoenphon, Pimlapas; Nakazwe, Ruth; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C L.

    In: Journal of Clinical Microbiology, Vol. 51, No. 1, 2013, p. 284-286.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  85. Published

    Genome sequencing - the ultimate answer to global real time genotyping and surveillance?. / Hendriksen, Rene S.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 43.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  86. Published
  87. Published
  88. Published

    Human risk from thermotolerant Campylobacter on broiler meat in Denmark. / Boysen, Louise; Nauta, Maarten; Ribeiro Duarte, Ana Sofia; Rosenquist, Hanne.

    In: International Journal of Food Microbiology, Vol. 162, No. 2, 2013, p. 129-134.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  89. Published

    In silico and in vitro evaluation of PCR-based assays for the detection of Bacillus anthracis chromosomal signature sequences. / Ågren, Joakim; Hamidjaja, Raditijo A.; Hansen, Trine; Ruuls, Robin; Thierry, Simon; Vigre, Håkan; Janse, Ingmar; Sundström, Anders; Segerman, Bo; Koene, Miriam; Löfström, Charlotta; Van Rotterdam, Bart ; Derzelle, Sylviane.

    In: Virulence, Vol. 4, No. 8, 2013, p. 1-15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  90. Published

    Integration of Epidemiological Evidence in a Decision Support Model for the Control of Campylobacter in Poultry Production. / Garcia Clavero, Ana Belén; Madsen, Anders L.; Vigre, Håkan.

    In: Agriculture, Vol. 3, No. 3, 2013, p. 516-535.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  91. Published

    Livestock Origin for a Human Pandemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus. / Spoor, Laura E.; McAdam, Paul R.; Weinert, Lucy A.; Rambaut, Andrew; Hasman, Henrik; Aarestrup, Frank Møller; Kearns, Angela M.; Larsen, Anders R.; Skov, Robert L.; Fitzgerald, J. Ross.

    In: mBio, Vol. 4, No. 4, e00356-13, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  92. Published

    Making sense of zeros: impact on human health risk estimates. / Ribeiro Duarte, Ana Sofia; Stockmarr, Anders; Nauta, Maarten.

    Med-Vet-Net Association International Scientific Conference DTU, Lyngby, Denmark, 24-25 June 2013: Abstract Book. Lyngby, 2013. p. 55.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  93. Published

    Method development in risk-benefit assessment and burden of disease estimation of food. / Berjia, Firew Lemma; Nauta, Maarten (Supervisor); Poulsen, Morten (Supervisor); Andersen, Rikke (Supervisor).

    Søborg : National Food Institute, Technical University of Denmark, 2013. 154 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  94. Published
  95. Published

    Molecular diagnostics of foodborne pathogens. / Hansen, Trine; Hoorfar, Jeffrey (Main supervisor); Löfström, Charlotta (Supervisor); Vigre, Håkan (Supervisor); Riber, Leise (Supervisor).

    Søborg : National Food Institute, Technical University of Denmark, 2013. 194 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  96. Published

    Occurence and control of viruses in food handling environments and in ready-to-eat foods. / Porsbo, Lone Jannok; Jensen, Tenna; Noerrung, Birgit.

    Food Borne Viruses and Prions and Their Significance for Public Health. ed. / Frans J. M. Smulders; Birgit Nørrung; Herbert Budka. Woodhead Publishing, 2013. p. 181-200 (Food Safety Assurance and Veterinary Public Health; No. 6).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  97. Published

    Occurrence of Listeria spp. in retail meat and dairy products in the area of Addis Ababa, Ethiopia.. / Derra, F. A.; Karlsmose, Susanne; Monga, D. P.; Mache, A.; Svendsen, Christina Aaby; Felix, B.; Granier, S. A.; Geyid, A.; Taye, G.; Hendriksen, Rene S.

    In: Foodborne Pathogens and Disease, Vol. 10, No. 6, 2013, p. 577-579.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  98. Published

    Occurrence of Salmonella in retail beef and related meat products in Zaria, Nigeria. / Tafida, S.Y.; Kabir, J.; Kwaga, J.K.P.; Bello, M.; Umoh, V.J.; Yakubu, S.E.; Nok, A.J.; Hendriksen, Rene S.

    In: Food Control, Vol. 32, No. 1, 2013, p. 119-124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  99. Published

    Organic acids for control of Salmonella in different feed materials. / Koyuncu, Sevinc; Andersson, Mats Gunnar; Löfström, Charlotta; Skandamis, Panagiotis N.; Gounadaki, Antonia; Zentek, Jürgen; Häggblom, Per .

    In: B M C Veterinary Research, Vol. 9, 81, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  100. Published

    PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.. / Cosentino, Salvatore; Larsen, Mette Voldby; Aarestrup, Frank Møller; Lund, Ole.

    In: PloS one., Vol. 8, No. 10, 2013, p. e77302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  101. Published

    Pathogen update: Salmonella. / Hald, Tine.

    Advances in Microbial Food Safety. ed. / J. Sofos. Vol. 1 Cambridge : Woodhead Publishing, 2013.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  102. Published

    Pathogen updates: Salmonella. / Hald, Tine.

    Foodborne Infections and Intoxications. ed. / G. Morris; M. Potter. 4. ed. Academic Press, Incorporated, 2013. p. 67-97.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

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