Division of Epidemiology and Microbial Genomics

  1. 2014
  2. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  3. E-pub ahead of print

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  4. Published

    Microbiological Safety of Meat: Salmonella spp.. / Wingstrand, Anne; Aabo, Søren.

    Encyclopedia of Meat Sciences 2e. ed. / Carrick Devine; Michael Dikemann. Vol. 2 Elsevier Science, 2014. p. 367-375.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  5. Published

    Persistence of fluoroquinolone-resistant Salmonella enterica serovar Kentucky from poultry and poultry sources in Nigeria. / Raufu, Ibrahim A.; Fashae, Kayode; Ameh, James A.; Ambali, AbdulGaniyu; Ogunsola, Folashade T.; Coker, Akitoye O.; Hendriksen, Rene S.

    In: Journal of Infection in Developing Countries, Vol. 8, No. 3, 2014, p. 384-388.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  6. Published

    Phylogenetic Analysis of Staphylococcus aureus CC398 Reveals a Sub-Lineage Epidemiologically Associated with Infections in Horses. / Abdelbary, Mohamed M. H.; Wittenberg, Anne; Cuny, Christiane; Layer, Franziska; Kurt, Kevin; Wieler, Lothar H.; Walther, Birgit; Skov, Robert; Larsen, Jesper; Hasman, Henrik; Fitzgerald, J. Ross; Smith, Tara C.; Wagenaar, J. A.; Pantosti, Annalisa; Hallin, Marie; Struelens, Marc J.; Edwards, Giles; Boese, R.; Nuebel, Ulrich; Witte, Wolfgang.

    In: PLOS ONE, Vol. 9, No. 2, e88083, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  7. Published

    Projekt 15: Tilpasning af den offentlige kontrol - risikobaseret kødkontrol. / Bollerslev, Anne Mette; Hansen, Tina Beck; Hald, Tine; Nauta, Maarten; Aabo, Søren.

    Søborg : DTU Fødevareinstituttet, 2014. 33 p.

    Publication: CommissionedReport – Annual report year: 2014

  8. Published

    Projekt 5 - Udvikling af proceshygiejnekriterier. / Bollerslev, Anne Mette; Hansen, Tina Beck; Nauta, Maarten; Aabo, Søren.

    Søborg : DTU Fødevareinstituttet, 2014. 15 p.

    Publication: CommissionedReport – Annual report year: 2014

  9. Published
  10. Published
  11. Published
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