Department of Systems Biology

  1. 2016
  2. Published

    Antibiotic combination therapy can select for broad-spectrum multidrug resistance in Pseudomonas aeruginosa. / Vestergaard, Martin; Paulander, Wilhelm; Marvig, Rasmus L.; Clasen, Julie; Jochumsen, Nicholas; Molin, Søren; Jelsbak, Lars; Ingmer, Hanne; Folkesson, Sven Anders.

    In: International Journal of Antimicrobial Agents, Vol. 47, 2016, p. 48-55.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    Cellulolytic and xylanolytic activities of common indoor fungi. / Andersen, Birgitte; Poulsen, Rehab; Hansen, Gustav Hammerich.

    In: International Biodeterioration and Biodegradation, Vol. 107, 2016, p. 111-116.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Chemosensory perception, symptoms and autonomic responses during chemical exposure in multiple chemical sensitivity. / Andersson, Linus; Claeson, Anna Sara; Dantoft, Thomas Meinertz; Skovbjerg, Sine; Lind, Nina; Nordin, Steven.

    In: International Archives of Occupational and Environmental Health, Vol. 89, No. 1, 2016, p. 79-88.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. E-pub ahead of print

    Control of lysosomal biogenesis and Notch-dependent tissue patterning by components of the TFEB-V-ATPase axis in Drosophila melanogaster. / Tognon, Emiliana; Kobia, Francis; Busi, Ilaria; Fumagalli, Arianna; De Masi, Federico; Vaccari, Thomas.

    In: Autophagy, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  6. E-pub ahead of print

    Dynamics of immature mAb glycoform secretion during CHO cell culture: An integrated modelling framework. / Jimenez del Val, Ioscani; Fan, Yuzhou; Weilguny, Dietmar.

    In: Biotechnology Journal, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati. / Frisvad, Jens Christian; Larsen, Thomas Ostenfeld.

    In: Frontiers in Microbiology, Vol. 6, 1485, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Glycoprofiling effects of media additives on IgG produced by CHO cells in fed-batch bioreactors. / Kildegaard, Helene Faustrup; Fan, Yuzhou; Wagtberg Sen, Jette; Larsen, Bo; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), Vol. 113, No. 2, 2016, p. 359-366.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    Immunogenicity of HLA Class I and II Double Restricted Influenza A-Derived Peptides. / Pedersen, Sara Ram; Christensen, Jan Pravsgaard; Buus, Søren; Rasmussen, Michael; Korsholm, Karen Smith; Nielsen, Morten; Claesson, Mogens Helweg.

    In: P L o S One, Vol. 11, No. 1, e0145629, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Accepted/In press

    Propionibacterium acnes – disease causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing. / Mollerup, Sarah; Friis-Nielsen, Jens; Vinner, Lasse; Richter, Stine Raith; Fridholm, Helena; Herrera, Jose Romero; Lund, Ole; Brunak, Søren; Gonzalez-Izarzugaza, Jose Maria; Mourier, Tobias; Nielsen, Lars Peter; Hansen, Anders Johannes.

    In: Journal of Clinical Microbiology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    LOX1 inhibition with small molecules. / Gousiadou, Chryssoula; Kouskoumvekaki, Irene.

    In: Journal of Molecular Graphics and Modelling, Vol. 63, 2016, p. 99-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  12. Published

    MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy. / Neupane, Manish; Clark, Allison P.; Landini, Serena; Birkbak, Nicolai Juul; Eklund, Aron Charles; Lim, Elgene; Culhane, Aedin C.; Barry, William T.; Schumacher, Steven E.; Beroukhim, Rameen; Szallasi, Zoltan Imre; Vidal, Marc; Hill, David E.; Silver, Daniel P.

    In: Cancer Discovery, Vol. 6, No. 1, 2016, p. 45-58.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  13. E-pub ahead of print

    Plant α-glucan phosphatases SEX4 and LSF2 display different affinity for amylopectin and amylose. / Wilkens, Casper; Auger, Kyle D.; Anderson, Nolan T.; Meekins, David A.; Raththagala, Madushi; Abou Hachem, Maher ; Payne, Christina M.; Gentry, Matthew S.; Svensson, Birte.

    In: Febs Letters, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. E-pub ahead of print

    Predicting Subcellular Localization of Proteins by Bioinformatic Algorithms. / Nielsen, Henrik.

    Protein Export in Gram-positive Bacteria. ed. / F. Bagnoli; R. Rappuoli. 2016. (Current Topics in Microbiology and Immunology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2016

  15. Published

    Quantification of oxidative stress phenotypes based on high-throughput growth profiling of protein kinase and phosphatase knockouts. / Altıntaş, Ali; Martini, Jacopo; Mortensen, Uffe Hasbro; Workman, Christopher T.

    In: Fems Yeast Research, Vol. 16, No. 1, fov101, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  16. Published

    Taichunamides: Prenylated Indole Alkaloids from Aspergillus taichungensis (IBT 19404). / Kagiyama, Ippei; Kato, Hikaru; Nehira, Tatsuo; Frisvad, Jens Christian; Sherman, David H.; Williams, Robert M.; Tsukamoto, Sachiko.

    In: Angewandte Chemie (International Edition), Vol. 55, No. 3, 2016, p. 1128-1132.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  17. Accepted/In press

    T cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome. / Bresciani, Anne Gøther; Paul, Sinu; Schommer, Nina; Dillon, Myles B.; Bancroft, Tara; Greenbaum, Jason; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: Immunology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  18. Published

    wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases. / Vazquez, Miguel; Pons, Tirso; Brunak, Søren; Valencia, Alfonso; Gonzalez-Izarzugaza, Jose Maria.

    In: Human Mutation, Vol. 37, No. 1, 2016, p. 36-42.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. 2015
  20. Published

    A catalog of the mouse gut metagenome. / Xiao, Liang; Feng, Qiang; Liang, Suisha; Sonne, Si Brask; Xia, Zhongkui; Qiu, Xinmin; Li, Xiaoping; Long, Hua; Zhang, Jianfeng; Zhang, Dongya; Liu, Chuan; Fang, Zhiwei; Chou, Joyce; Glanville, Jacob; Hao, Qin; Kotowska, Dorota; Colding, Camilla; Licht, Tine Rask; Wu, Donghai; Yu, Jun; Sung, Joseph Jao Yiu; Liang, Qiaoyi; Li, Junhua; Jia, Huijue; Lan, Zhou; Tremaroli, Valentina; Dworzynski, Piotr; Nielsen, H Bjørn; Bäckhed, Fredrik; Doré, Joël; Le Chatelier, Emmanuelle; Ehrlich, S. Dusko; Lin, John C.; Arumugam, Manimozhiyan; Wang, Jun; Madsen, Lise; Kristiansen, Karsten.

    In: Nature Biotechnology, Vol. 33, No. 10, 2015, p. 1103-1108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. Published

    Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification. / Andreatta, Massimo; Karosiene, Edita; Rasmussen, Michael; Stryhn, Anette; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 67, No. 11-12, 2015, p. 641-650.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  22. E-pub ahead of print
  23. Published

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways.. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, Vol. 36, No. 6, 2015, p. 4327-4338.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published

    A CRISPR/Cas9 system for genetic engineering of filamentous fungi. / Nødvig, Christina Spuur; Hoof, Jakob Blæsbjerg; Kogle, Martin Engelhard; Mortensen, Uffe Hasbro.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-16.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  25. Published

    A CRISPR-Cas9 System for Genetic Engineering of Filamentous Fungi. / Nødvig, Christina Spuur; Nielsen, Jakob B.; Kogle, Martin Engelhard; Mortensen, Uffe Hasbro.

    In: P L o S One, Vol. 10, No. 7, e0133085, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  26. Published
  27. Published

    Adaptive Laboratory Evolution Of Escherichia Coli Reveals Arduous Resistance Development To A Combination Of Three Novel Antimicrobial Compounds And To The Short Amp P9-4. / Citterio, Linda; Franzyk, Henrik; Gram, Lone.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 29-29.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  28. Published

    Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain. / Zhang, Yiming; Liu, Guodong; Engqvist, Martin K. M.; Krivoruchko, Anastasia; Hallström, Björn M.; Chen, Yun; Siewers, Verena; Nielsen, Jens.

    In: Microbial Cell Factories, Vol. 14, 116, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  29. Published

    A global reference for human genetic variation. / Auton, Adam; Abecasis, Goncalo R.; M. Altshuler, David; M. Durbin, Richard; R. Bentley, David; Chakravarti, Aravinda; G. Clark, Andrew; Donnelly, Peter; E. Eichler, Evan; Flicek, Paul; Wang, Jun; Feng, Qiang; Fang, Xiaodong; Guo, Xiaosen; Jian, Min; Jiang, Hui; Liu, Xiao; Fang, Lin; Cao, Hongzhi; Jespersen, Jakob Berg.

    In: Nature, Vol. 526, 2015, p. 68-74.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  30. Published
  31. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 194, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published

    Amino acid and glucose metabolism in fed-batch CHO cell culture affects antibody production and glycosylation. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering, Vol. 112, No. 3, 2015, p. 521-535.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  34. Published

    A modern approach for epitope prediction: identification of foot-and-mouth disease virus peptides binding bovine leukocyte antigen (BoLA) class I molecules. / Pandya, Mital; Rasmussen, Michael; Hansen, Andreas; Nielsen, Morten; Buus, Søren; Golde, William; Barlow, John.

    In: Immunogenetics, Vol. 67, No. 11-12, 2015, p. 691-703.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  35. Published

    Amphibian antimicrobial peptide fallaxin analogue FL9 affects virulence gene expression and DNA replication in Staphylococcus aureus. / Gottschalk, Sanne; Gottlieb, Caroline Trebbien; Vestergaard, Martin; Hansen, Paul R.; Gram, Lone; Ingmer, Hanne; Thomsen, Line Elnif.

    In: Journal of Medical Microbiology, Vol. 64, No. 12, 2015, p. 1504-1513.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  36. Published

    A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Lund, Anne Mathilde; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Baycin-Hizal, Deniz; Betenbaugh, Michael J.; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), Vol. 112, No. 10, 2015, p. 2172-2184.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  37. Published

    Analysis artefacts of the INS-IGF2 fusion transcript. / Wernersson, Rasmus; Frogne, Thomas; Rescan, Claude; Hansson, Lena; Bruun, Christine; Grønborg, Mads; Jensen, Jan Nygaard; Madsen, Ole Dragsbæk.

    In: B M C Molecular Biology, Vol. 16, No. 13, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  38. Published

    Analysis of gene essentiality in Escherichia coli across strains and growth conditions. / Bonde, Ida; Lennen, Rebecca; Cardoso, Joao; Koza, Anna; Herrgard, Markus.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  39. Published
  40. Published

    Analysis of Surface Binding Sites (SBS) within GH62, GH13, and GH77. / Wilkens, Casper; Cockburn, Darrell; Andersen, Susan; Ole Petersen, Bent; Ruzanski, Christian; A. Field, Robert; Hindsgaul, Ole; Nakai, Hiroyuki; McCleary, Barry; M. Smith, Alison; Abou Hachem, Maher ; Svensson, Birte.

    In: Journal of Applied Glycoscience, Vol. 62, No. 3, 2015, p. 87-93.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published

    A novel approach for studying programmed cell death in living plant tissues. / Mark, Christina; Dufva, Martin (Supervisor); Finnie, Christine (Supervisor).

    Kgs. Lyngby : Technical University of Denmark (DTU), 2015. 140 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  42. Published

    A novel common variant in DCST2 is associated with length in early life and height in adulthood. / van der Valk, Ralf J.P.; Kreiner-Møller, Eskil; Kooijman, Marjolein N.; Guxens, Mònica; Stergiakouli, Evangelia; Sääf, Annika; Bradfield, Jonathan P.; Geller, Frank; Hayes, M. Geoffrey; Cousminer, Diana L.; Bisgaard, Hans; Chawes, Bo; Stokholm, Jakob; Waage, Johannes; Eriksen, Patrick; Sevelsted, Astrid; Melbye, Mads; Feenstra, Bjarke; Pers, Tune Hannes; Bønnelykke, Klaus.

    In: Human Molecular Genetics, Vol. 24, No. 4, 2015, p. 1155-1168.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  43. Published

    A novel in vitro wound biofilm model used to evaluate low-frequency ultrasonic-assisted wound debridement. / Crone, S.; Garde, Christian; Bjarnsholt, T.; Alhede, Morten.

    In: Journal of Wound Care, Vol. 24, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  44. Published

    Applying genetics in inflammatory disease drug discovery. / Folkersen, Lasse; Biswas, Shameek; Frederiksen, Klaus Stensgaard; Keller, Pernille; Fox, Brian; Fleckner, Jan.

    In: Drug Discovery Today, Vol. 20, No. 10, 2015, p. 1176-1181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  45. Published

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D’Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Søren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, Vol. 9, No. 9-10, 2015, p. 938-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  46. Published

    Archival Bone Marrow Samples: Suitable for Multiple Biomarker Analysis?. / Lund, Bendik; Najmi, A. Laeya; Wesolowska, Agata; Landsem, Veslemoy M.; Rasmussen, Kirsten K.; Borst, Louise; Gupta, Ramneek; Schmiegelow, Kjeld; Klungland, Helge.

    In: Applied Immunohistochemistry & Molecular Morphology, Vol. 23, No. 1, 2015, p. 71-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  47. Published
  48. Published

    A retrospective metagenomics approach to studying Blastocystis. / Andersen, Lee O'Brien; Bonde, Ida; Nielsen, Henrik Bjørn; Stensvold, Christen Rune.

    In: F E M S Microbiology Reviews, Vol. 91, No. 7, fiv072, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published
  50. Published
  51. Published

    Aspiperidine oxide, a piperidine N-oxide from the filamentous fungus Aspergillus indologenus. / Petersen, Lene Maj; Kildgaard, Sara; Jaspars, Marcel; Larsen, Thomas Ostenfeld.

    In: Tetrahedron Letters, Vol. 56, No. 14, 2015, p. 1847-1850.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  52. Published

    A taxonomic revision of the Wallemia sebi species complex. / Jančič, Sašo; Nguyen, Hai D. T.; Frisvad, Jens Christian; Zalar, Polona; Schroers, Hans-Josef; Seifert, Keith A.; Gunde-Cimerman, Nina.

    In: P L o S One, Vol. 10, No. 5, e0125933, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  53. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  54. Published

    Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides. / Oehlenschlæger, Christian Berg; Løvgreen, Monika Nøhr; Reinauer, Eva; Lehtinen, Emilia; Pind, Marie-Louise Lindberg; Harris, Pernille; Martinussen, Jan; Willemoës, Martin.

    In: Applied and Environmental Microbiology, Vol. 81, No. 10, 2015, p. 3395-3404.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  55. Published

    Bacteriocin-mediated competition in cystic fibrosis lung infections. / Ghoul, Melanie; West, Stuart A.; Johansen, Helle Krogh; Molin, Søren; Harrison, Odile B.; Maiden, Martin C. J.; Jelsbak, Lars; Bruce, John B.; Griffin, Ashleigh S.

    In: Royal Society of London. Proceedings B. Biological Sciences, Vol. 282, No. 1814, 20150972, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  56. Published
  57. Published

    Bioactivities by a crude extract from the Greenlandic Pseudomonas sp. In5 involves the nonribosomal peptides, nunamycin and nunapeptin. / Frydenlund Michelsen, Charlotte; Jensen, Helle; Venditto, Vincent J.; Hennessy, Rosanna C.; Stougaard, Peter.

    In: PeerJ, Vol. 3, e1476, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  58. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  59. Published

    Biosensor-based genome screening platform for the production of Biosynthetic Precursors and coFactors in E. coli.. / Cardinale, Stefano; Ye, Lumeng; Sommer, Morten.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-14.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  60. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  61. Published

    Carbon Source Influences Population Heterogeneity In Pseudomonas Putida Kt2440 Biofilms. / Juel Christensen, Anne-Mette; Sternberg, Claus; Molin, Søren.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 41-41.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  62. Published

    CAUSEL: an epigenome- and genome-editing pipeline for establishing function of noncoding GWAS variants.. / Spisák, Sándor; Lawrenson, Kate; Fu, Yanfang; Csabai, Istvan; Cottman, Rebecca T.; Seo, Ji-Heui; Haiman, Christopher; Han, Ying; Lenci, Romina; Li, Qiyuan; Tisza, Viktória; Szallasi, Zoltan Imre; Herbert, Zachery T.; Chabot, Matthew; Pomerantz, Mark; Solymosi, Norbert; Gayther, Simon A.; Joung, J. Keith; Freedman, Matthew L.

    In: Nature Medicine, Vol. 21, No. 11, 2015, p. 1357-1363.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  63. Published

    Characterising interactions between alginates of different sizes and beta-lactoglobulin. / Stender, Emil G. P.; Khan, Sanaullah; Mäkinen, Outi E.; Almdal, Kristoffer; Westh, Peter; Ibsen, Richard; Abou Hachem, Maher ; Svensson, Birte.

    In: Protein Science, Vol. 24, No. S1, PL-070, 2015, p. 303-303.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  64. Published

    Characterization of Alternaria strains from Argentinean blueberry, tomato, walnut and wheat. / Andersen, Birgitte; Nielsen, Kristian Fog; Fernández Pinto, Virginia; Patriarca, Andrea.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 1-10.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  65. Published

    Characterization of Chinese Hamster Ovary Cells Producing Coagulation Factor VIII Using Multi-omics Tools. / Kaas, Christian Schrøder; Andersen, Mikael Rørdam (Supervisor); Kristensen, Claus (Supervisor); Bolt, Gert (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 219 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  66. Published
  67. Published
  68. Published

    Chemical intolerance. / Dantoft, Thomas Meinertz; Andersson, Linus; Nordin, Steven; Skovbjerg, Sine.

    In: Current Rheumatology Reviews, Vol. 11, No. 2, 2015, p. 167-184.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  69. Published

    Chemodiversity in the genus Aspergillus. / Frisvad, Jens Christian; Larsen, Thomas Ostenfeld.

    In: Applied Microbiology and Biotechnology, Vol. 99, No. 19, 2015, p. 7859-7877.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  70. Published

    Chitin Degradation In Marine Bacteria. / Paulsen, Sara; Machado, Henrique; Gram, Lone.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 65-66.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  71. Published
  72. Published

    Clinical utilization of genomics data produced by the international Pseudomonas aeruginosa consortium. / Freschi, Luca; Jeukens, Julie; Kukavica-Ibrulj, Irena; Boyle, Brian; Dupont, Marie-Josée; Laroche, Jérôme; Larose, Stéphane; Maaroufi, Halim; Fothergill, Joanne L.; Moore, Matthew; Jelsbak, Lars; Thrane, Sandra Wingaard.

    In: Frontiers in Microbiology, Vol. 6, 1036, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  73. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  74. Published
  75. Published
  76. Published
  77. Published

    Comparative Evaluation of the Antimicrobial Activity of Different Antimicrobial Peptides against a Range of Pathogenic Bacteria. / Ebbensgaard, Anna Elisabeth; Mordhorst, Hanne; Overgaard, Michael Toft; Nielsen, Claus Gyrup; Aarestrup, Frank Møller; Hansen, Egon Bech; Mergaert, Peter (Editor).

    In: P L o S One, Vol. 10, No. 12, e0144611, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  78. Published

    Complementing DIGE proteomics and DNA subarray analyses to shed light on Oenococcus oeni adaptation to ethanol in wine-simulated conditions. / Costantini, Antonella; Rantsiou, Kalliopi; Majumder, Avishek; Jacobsen, Susanne; Pessione, Enrica; Svensson, Birte; Garcia-Moruno, Emilia; Cocolin, Luca.

    In: Journal of Proteomics, Vol. 123, 2015, p. 114-127.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  79. Published

    Complete Genome Sequence of the Persistent Listeria monocytogenes Strain R479a. / Schmitz-Esser, Stephan; Gram, Lone; Wagner, Martin.

    In: Genome Announcements, Vol. 3, No. 2, e00150-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  80. Published

    Continuous Exposure Of Vibrio Anguillarum To Tropodithietic Acid: Genetic Changes And Influence On Virulence. / Rasmussen, Bastian Barker; D'Alvise, Paul; Grotkjær, Torben; Bentzon-Tilia, Mikkel; Gram, Lone.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 72-72.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  81. Published
  82. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Sønderby, Søren Kaae; Sønderby, Casper Kaae; Nielsen, Henrik; Winther, Ole.

    Algorithms for Computational Biology: Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings. ed. / Adrian-Horia Dediu; Francisco Hernández-Quiroz; Carlos Martín-Vide; David A. Rosenblueth. Vol. 9199 Springer International Publishing, 2015. p. 68-80 (Lecture Notes in Computer Science).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

  83. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Nielsen, Henrik; Sønderby, Søren Kaae; Sønderby, Casper Kaae; Winther, Ole.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  84. Published

    Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin; Orton, Richard J; Blome, Sandra; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    In: P L o S One, Vol. 10, No. 10, e0140912, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  85. Published
  86. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  87. Published

    Current state of genome-scale modeling in filamentous fungi. / Brandl, Julian; Andersen, Mikael Rørdam.

    In: Biotechnology Letters, Vol. 37, No. 6, 2015, p. 1131-1139.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  88. Published

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, Vol. 43, No. D1, gku1092, 2015, p. D1140-D1144.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  89. Published

    Danger in the reef : proteome, toxicity, and neutralization of the venom of the olive sea snake, Aipysurus laevis. / Laustens, Andreas H.; Gutiérrez, José Maria; Redsted Rasmussen, Arne; Engmark, Mikael; Gravlund, Peter; Sanders, Kate L.; Lohse, Brian; Lomonte, Bruno.

    In: Toxicon, Vol. 107, No. Part B, 2015, p. 187-196.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  90. Published

    Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae. / Udatha, D. B. R. K. Gupta; Topakas, Evangelos; Salazar, Margarita Pena; Olsson, Lisbeth; Andersen, Mikael Rørdam; Panagiotou, Gianni.

    In: B M C Systems Biology, Vol. 9, No. 77, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  91. Published

    Deep sequencing reveals different compositions of mRNA transcribed from the F8 gene in a panel of FVIII-producing CHO cell lines. / Kaas, Christian Schrøder; Bolt, Gert; Hansen, Jens J; Andersen, Mikael Rørdam; Kristensen, Claus.

    In: Biotechnology Journal, Vol. 10, No. 7, 2015, p. 1082-1089.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  92. Published

    Defining Starch Binding by Glucan Phosphatases. / Auger, Kyle; Raththagala, Madushi; Wilkens, Casper; Svensson, Birte; Gentry, Matthew.

    In: Faseb Journal, Vol. 29, No. no. 1 Supplement, LB205, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  93. Published

    Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells. / Ternette, Nicola; Yang, Hongbing; Partridge, Thomas; Llano, Anuska; Cedeño, Samandhy; Fischer, Roman; Charles, Philip D.; Dudek, Nadine L.; Mothe, Beatriz; Crespo, Manuel; Fischer, William M.; Korber, Bette T. M.; Nielsen, Morten; Borrow, Persephone; Purcell, Anthony W.; Brander, Christian; Dorrell, Lucy; Kessler, Benedikt M.; Hanke, Tomáš.

    In: European Journal of Immunology, Vol. 46, No. 1, 2015, p. 60-69.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  94. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  95. Published
  96. Published

    Dereplication-guided isolation of depsides thielavins S-T and lecanorins D-F from the endophytic fungus Setophoma sp.. / de Medeiros, Livia S.; Abreu, Lucas M.; Nielsen, Anita; Ingmer, Hanne; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Rodrigues-Filho, Edson.

    In: Phytochemistry, Vol. 111, 2015, p. 154-162.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  97. Published

    Determination of specificity influencing residues for key transcription factor families. / Patel, Ronak Y.; Garde, Christian; Stormo, Gary D.

    In: Quantitative Biology, Vol. 3, No. 3, 2015, p. 115-123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  98. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  99. Published

    Developing of microbial consortia for enzymatic valuable conversion of keratin-rich slaughterhouse waste. / Espersen, Roall; Gonzalo, Milena; Jacquiod, Samuel; Abu-Alsud, Waleed; Sørensen, Søren J.; Winther, Jakob R.; Hägglund, Per; Svensson, Birte.

    In: Protein Science, Vol. 24, No. S1, PK-006, 2015, p. 265.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  100. Published

    Development of a real-time PCR method coupled with a selective pre-enrichment step for quantification of Morganella morganii and Morganella psychrotolerans in fish products. / Podeur, Gaetan; Dalgaard, Paw; Leroi, Francoise; Prevost, Herve; Emborg, Jette; Martinussen, Jan; Hansen, Lars Hestbjerg; Filet, Marie-France.

    In: International Journal of Food Microbiology, Vol. 203, 2015, p. 55-62.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  101. Published

    Development of Dietary Patterns Spanning Infancy and Toddlerhood: Relation to Body Size, Composition and Metabolic Risk Markers at Three Years. / Andersen, Louise B. B.; Mølgaard, Christian; Ejlerskov, Katrine Tschentscher; Trolle, Ellen; Michaelsen, Kim F.; Bro, Rasmus; Pipper, Christian B.

    In: Aims Public Health, Vol. 2, No. 3, 2015, p. 332-357.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  102. Published
  103. Published

    Development of Spatial Distribution Patterns by Biofilm Cells. / Haagensen, Janus Anders Juul; Hansen, Susse Kirkelund; Bak Christensen, Bjarke; Pamp, Sünje Johanna; Molin, Søren.

    In: Applied and Environmental Microbiology, Vol. 81, No. 18, 2015, p. 6120-6128.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  104. Published

    Dichlorinated and Brominated Rugulovasines, Ergot Alkaloids Produced by Talaromyces wortmannii. / Soman De Medeiros, Lívia; da Silva, José Vinícius; Abreu, Lucas Magalhães ; Pfenning, Ludwig; Silva, Carolina; Secherrer Thomasi , Sérgio; Venâncio, Tiago; van Pée, Karl-Heinz; Nielsen, Kristian Fog; Rodrigues-Filho, Edson.

    In: Molecules, Vol. 20, No. 9, 2015, p. 17627-17644.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  105. Published

    Differential expression of small RNAs under chemical stress and fed-batch fermentation in Escherichia coli. / Rau, Martin Holm; Bojanovic, Klara; Nielsen, Alex Toftgaard; Long, Katherine S.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-8.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  106. Published

    Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides. / Bonde, Mads; Kosuri, Sriram; Genee, Hans Jasper; Sarup-Lytzen, Kira; Church, George M.; Sommer, Morten; Wang, Harris H.

    In: A C S Synthetic Biology, Vol. 4, No. 1, 2015, p. 17-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  107. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. / Liu, Siyang; Huang, Shujia; Rao, Junhua; Ye, Weijian; Schierup, Mikkel H.; Villesen, Palle ; Xu, Xun; Li, Ning; Kristiansen, Karsten; Sørensen, Thorkild I. A.; Hansen, Torben; Pedersen, Oluf; Brunak, Søren; Gupta, Ramneek; Rasmussen, Simon; Lund, Ole; Bolund, Lars; Børglum, Anders D.; Eiberg, Hans; Nørgaard Flindt, Esben; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Jiang, Hui; Wang, Ou ; Cheng, Xiaofang ; Demontis, Ditte ; Besenbacher, Søren; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Liu, Siyang; Chang, Yuqi; Li, Shengting; Guo, Xiaosen; Cao, Hongzhi; Ye, Chen; Maretty, Lasse; Andreas Sibbesen, Jonas; Albrechtsen, Anders; Bork-Jensen, Jette; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Belling, Kirstine González-Izarzugaza; Yadav, Rachita; Grove, Jakob; Dam-Als, Thomas; Lescai, Francesco; Krogh, Anders; Wang, Jun.

    In: GigaScience, Vol. 4, No. 64, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  108. Published

    Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. / Forslund, Kristoffer; Hildebrand, Falk ; Nielsen, Trine N.; Falony, Gwen; Le Chatelier, Emmanuelle; Sunagawa, Shinichi; Prifti, Edi; Vieira-Silva, Sara ; Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Arumugam, Manimozhiyan; Kristiansen, Karsten; Yvonne Voig, Anita; Vestergaard, Henrik; Hercog, Rajna; Costea, Paul Igor; Kultima, Jens Roat; Li, Junhua; Jørgensen, Torben; Levenez, Florence; Dore, Joël; Nielsen, Henrik Bjørn; Brunak, Søren; Raes, Jeroen; Hansen, Torben; Wang, Jun; Ehrlich, S. Dusko; Bork, Peer; Pedersen, Oluf.

    In: Nature, Vol. 528, No. 7581, 2015, p. 262-266.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  109. Published

    Distinct inflammatory and cytopathic characteristics of Escherichia coli isolates from inflammatory bowel disease patients. / Jensen, Stina Rikke; Mirsepasi-Lauridsen, Hengameh Chloé; Thysen, Anna Hammerich; Brynskov, Jørn; Krogfelt, Karen Angeliki; Petersen, Andreas Munk; Pedersen, Anders Elm; Brix, Susanne.

    In: International Journal of Medical Microbiology, Vol. 305, No. 8, 2015, p. 925-936.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  110. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  111. E-pub ahead of print

    Divergent Response Profile in Activated Cord Blood T cells from First-born Child Implies Birth-order-associated in Utero Immune Programming. / Kragh, Marie; Larsen, Jeppe Madura; Thysen, Anna Hammerich; Rasmussen, Morten Arendt; Wolsk, Helene Mygind; Bisgaard, Hans Flinker; Pedersen, Susanne Brix.

    In: Allergy, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  112. Published

    Diversity of metabolic profiles of cystic fibrosis Pseudomonas aeruginosa during the early stages of lung infection. / Jørgensen, Karin Meinike; Wassermann, Tina; Johansen, Helle Krogh; Christiansen, Lasse Engbo; Molin, Søren; Høiby, Niels; Ciofu, Oana.

    In: Microbiology, Vol. 161, No. 7, 2015, p. 1447-1462.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  113. Published

    Draft Genome Sequence of Pseudomonas sp. Strain In5 Isolated from a Greenlandic Disease Suppressive Soil with Potent Antimicrobial Activity. / Hennessy, Rosanna C.; Glaring, Mikkel Andreas; Frydenlund Michelsen, Charlotte; Olsson, Stefan; Stougaard, Peter.

    In: Genome Announcements, Vol. 3, No. 6, e01251-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  114. Published

    Draft Genome Sequence of Vibrio parahaemolyticus VH3, Isolated from an Aquaculture Environment in Greece. / Castillo, Daniel; Jun, Jin Woo; D'Alvise, Paul; Middelboe, Mathias; Gram, Lone; Liu, Siyang; Katharios, Pantelis.

    In: Genome Announcements, Vol. 3, No. 4, e00731-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  115. Published

    Draft Genome Sequences of Vibrio alginolyticus Strains V1 and V2, Opportunistic Marine Pathogens. / Castillo, Daniel; D'Alvise, Paul; Kalatzis, Panos G.; Kokkari, Constantina; Middelboe, Mathias; Gram, Lone; Liu, Siyang; Katharios, Pantelis.

    In: Genome Announcements, Vol. 3, No. 4, e00729-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  116. Published

    Draft Genome Sequences of the Fish Pathogen Vibrio harveyi Strains VH2 and VH5. / Castillo, Daniel; D'Alvise, Paul; Middelboe, Mathias; Gram, Lone; Liu, Siyang; Kalatzis, Panos G.; Kokkari, Constantina; Katharios, Pantelis.

    In: Genome Announcements, Vol. 3, No. 5, e01062-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  117. Published

    Drought priming at vegetative growth stages improves tolerance to drought and heat stresses occurring during grain filling in spring wheat. / Wang, Xiao; Vignjevic, Marija; Liu, Fulai; Jacobsen, Susanne; Jiang, Dong; Wollenweber, Bernd .

    In: Plant Growth Regulation, Vol. 75, No. 3, 2015, p. 677-687.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  118. Published

    Dual Action of Lysophosphatidate-Functionalised Titanium: Interactions with Human (MG63) Osteoblasts and Methicillin Resistant Staphylococcus aureus. / Skindersø, Mette Elena; Krogfelt, Karen Angeliki; Blom, Ashley; Jiang, Guowei; Prestwich, Glenn D; Mansell, Jason Peter.

    In: P L o S One, Vol. 10, No. 11, e0143509, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  119. Published

    Dynamic single-cell analysis of Saccharomyces cerevisiae under process perturbation: Comparison of different methods for monitoring the intensity of population heterogeneity. / Delvigne, Frank; Baert, Jonathan; Gofflot, Sébastien; Lejeune, Annick; Telek, Samuel; Johanson, Ted; Eliasson Lantz, Anna.

    In: Journal of Chemical Technology and Biotechnology, Vol. 90, No. 2, 2015, p. 314–323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  120. Published

    Dynamics in Microbial Composition and Functionality over a Season in Two Contrasting Estuarine Systems. / Traving, Sachia; Bentzon-Tilia, Mikkel; Mantikci, Mustafa; Knudsen-Leerbeck, Helle; Hansen, Jørgen L. S.; Markager, Stiig; Riemann, Lasse.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 64-65.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  121. Published

    Early Detection Of Bacterial Infections By Electrochemistry. / Al Atraktchi, Fatima Al-Zahraa; Johansen, Helle Krogh; Molin, Søren; Svendsen, Winnie Edith.

    2015. Poster session presented at Conference on Electrochemical Science and Technology 2015, Copenhagen, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  122. Published

    Early Detection Of Chronic Bacterial Infections By Microsensors. / Al Atraktchi, Fatima Al-Zahraa; Molin, Søren; Johansen, Helle Krogh; Svendsen, Winnie Edith.

    2015. Poster session presented at The 3rd International Conference on Nanotechnology in Medicine (NANOMED), Manchester, United Kingdom.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  123. Published

    Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago. / Rasmussen, Simon; Allentoft, Morten Erik; Nielsen, Kasper; Orlando, Ludovic; Sikora, Martin; Sjögren, Karl-Göran; Pedersen, Anders Gorm; Schubert, Mikkel; Van Dam, Alex; Kapel, Christian Moliin Outzen; Nielsen, Henrik Bjørn; Brunak, Søren; Avetisyan, Pavel; Epimakhov, Andrey; Khalyapin, Mikhail Viktorovich; Gnuni, Artak; Kriiska, Aivar; Lasak, Irena; Metspalu, Mait; Moiseyev, Vyacheslav; Gromov, Andrei; Pokutta, Dalia; Saag, Lehti; Varul, Liivi; Yepiskoposyan, Levon; Sicheritz-Pontén, Thomas; Foley, Robert A; Lahr, Marta Mirazón; Nielsen, Rasmus; Kristiansen, Kristian; Willerslev, Eske.

    In: Cell, Vol. 163, No. 3, 2015, p. 571-582.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  124. Published

    Ebolavirus comparative genomics. / Jun, Se-Ran; Leuze, Michael R.; Nookaew, Intawat; Uberbacher, Edward C.; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; Lund, Ole; Buzard, Gregory S.; Pedersen, Thomas Dybdal; Wassenaar, Trudy M.; Ussery, David W.

    In: F E M S Microbiology Reviews, Vol. 479, No. 1, fuv031, 2015, p. 764-778.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  125. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Congress of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  126. Published

    Elucidating Host-Pathogen Interactions Based on Post-Translational Modifications Using Proteomics Approaches. / Ravikumar, Vaishnavi; Jers, Carsten; Mijakovic, Ivan.

    In: Frontiers in Microbiology, Vol. 6, 1312, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  127. Published

    Emulsifying triglycerides with dairy phospholipids instead of soy lecithin modulates gut lipase activity : Emulsifying triglycerides with dairy phospholipids. / Mathiassen, Jakob Hovalt; Nejrup, Rikke Guldhammer; Frøkiær, Hanne; Nilsson, Åke; Ohlsson, Lena; Hellgren, Lars I.

    In: European Journal of Lipid Science and Technology, Vol. 117, No. 10, 2015, p. 1522-1539.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  128. Published

    Engineered CHO cells for production of diverse, homogeneous glycoproteins. / Yang, Zhang; Wang, Shengjun; Halim, Adnan; Schulz, Morten Alder; Frodin, Morten; Rahman, Shamim H.; Vester-Christensen, Malene Bech; Behrens, Carsten; Kristensen, Claus; Vakhrushev, Sergey Y.; Bennett, Eric Paul; Wandall, Hans H.; Clausen, Henrik.

    In: Nature Biotechnology, Vol. 33, No. 8, 2015, p. 842-844.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  129. Published

    Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. / Mendoza, Marie Lisandra Zepeda; Sicheritz-Pontén, Thomas; Gilbert, M. Thomas P.

    In: Briefings in Bioinformatics, Vol. 16, No. 5, 2015, p. 745-758.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  130. Published

    Epistatic Mutations And Unpredictable Phenotypes In Pseudomonas Aeruginosa. / Andresen, Eva Kammer; Abou Hachem, Maher ; Jelsbak, Lars.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 49-49.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  131. Published

    Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. / Jensen, Niels F.; Stenvang, Jan; Beck, Mette Kristina; Hanáková, Barbora; Belling, Kirstine C.; Nguyen Do, Khoa; Viuff, Birgitte; Nygård, Sune B.; Gupta, Ramneek; Rasmussen, Mads H.; Tarpgaard, Line S.; Hansen, Tine P.; Budinská, Eva; Pfeiffer, Per; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Delorenzi, Mauro; Andersen, Claus L.; Rømer, Maria U.; Brünner, Nils; Moreira, José M.A.

    In: Molecular Oncology, Vol. 9, No. 6, 2015, p. 1169-1185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  132. Published

    Evidence of interactions between aroma compounds and the CB1 receptor opens new routes for regulation of food intake. / Le Bon, Anne-Marie; Audouze, Karine Marie Laure; Taboureau, Olivier ; Burton, Kathryn; Belloir, Christine; Desmetz, Catherine; Brunak, Søren; Guichard, Elisabeth; Tromelin, Anne.

    In: Chemical Senses, Vol. 40, No. 3, 2015, p. 280-280.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  133. Published

    Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse. / Der Sarkissian, Clio; Ermini, Luca; Schubert, Mikkel; Yang, Melinda A.; Librado, Pablo; Fumagalli, Matteo; Jónsson, Hákon; Bar-Gal, Gila Kahila; Albrechtsen, Anders; Vieira, Filipe G.; Petersen, Bent; Ginolhac, Aurélien; Seguin-Orlando, Andaine; Magnussen, Kim; Fages, Antoine; Gamba, Cristina; Lorente-Galdos, Belen; Polani, Sagi; Steiner, Cynthia; Neuditschko, Markus; Jagannathan, Vidhya; Feh, Claudia; Greenblatt, Charles L.; Ludwig, Arne; Abramson, Natalia I.; Zimmermann, Waltraut; Schafberg, Renate; Tikhonov, Alexei; Sicheritz-Pontén, Thomas; Willerslev, Eske; Marques-Bonet, Tomas; Ryder, Oliver A.; McCue, Molly; Rieder, Stefan; Leeb, Tosso; Slatkin, Montgomery; Orlando, Ludovic.

    In: Current Biology, Vol. 25, No. 19, 2015, p. 2577-2583.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  134. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  135. Published

    Evolution of substrate recognition sites (SRSs) in cytochromes P450 from Apiaceae exemplified by the CYP71AJ subfamily. / Dueholm, Bjørn; Krieger, Celia; Drew, Damian; Olry, Alexandre; Kamo, Tsunashi; Taboureau, Olivier ; Weitzel, Corinna; Bourgaud, Frederic; Hehn, Alain; Simonsen, Henrik Toft.

    In: B M C Evolutionary Biology, Vol. 15, No. 122, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  136. Published

    Expanding the species and chemical diversity of Penicillium section Cinnamopurpurea. / Peterson, Stephen W.; Jurjević, Željko; Frisvad, Jens Christian.

    In: P L o S One, Vol. 10, No. 4, e0121987, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  137. Published
  138. Published

    Exploiting fungal cell factories for pigment production. / Nymschefsky, Gerit; Petersen, Thomas Isbrandt; Rasmussen, Kasper Bøwig; Thrane, Ulf; Workman, Mhairi.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-7.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  139. Published

    Exploring Marine Environments To Unravel Tolerance Mechanisms To Relevant Compounds. / Machado, Henrique; Cavaleiro, Ana Mafalda; Nørholm, Morten; Gram, Lone.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 76-76.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  140. Published

    Exploring the potential of the glycerol-3-phosphate dehydrogenase 2 (GPD2) promoter for recombinant gene expression in Saccharomyces cerevisiae. / Knudsen, Jan Dines; Johanson, Ted; Eliasson Lantz, Anna; Carlquist, Magnus.

    In: Biotechnology Reports , Vol. 7, 2015, p. 107-119.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  141. Published
  142. Published

    Expression profiling and functional analyses of BghPTR2, a peptide transporter from Blumeria graminis f. sp. hordei. / Droce, Aida; Holm, Kirsten B.; Olsson, Stefan; Frandsen, Rasmus John Normand; Sondergaard, Teis Esben; Sørensen, Jens Laurids; Giese, Henriette.

    In: Fungal Biology, Vol. 119, No. 7, 2015, p. 551-559.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  143. Published

    Extended spectrum beta-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment. / Kjeldsen, Thea S. B.; Sommer, Morten Otto Alexander; Olsen, John E.

    In: B M C Microbiology, Vol. 15, No. 63, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  144. Published

    Five new Talaromyces species with ampulliform-like phialides and globose rough walled conidia resembling T. verruculosus. / Visagie, Cobus M.; Yilmaz, Neriman; Frisvad, Jens Christian; Houbraken, Jos; Seifert, Keith A.; Samson, Robert A.; Jacobs, Karin.

    In: Mycoscience, Vol. 56, No. 5, 2015, p. 486-502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  145. Published

    FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses. / Simon, Christian; Kudahl, Ulrich Johan; Sun, Jing; Olsen, Lars Rønn; Zhang, Guang Lan; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunology Research, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  146. Published

    Functional Analysis of a Carotid Intima-Media Thickness Locus Implicates BCAR1 and Suggests a Causal Variant. / Boardman-Pretty, Freya; Smith, Andrew J. P.; Cooper, Jackie; Palmen, Jutta; Folkersen, Lasse; Hamsten, Anders; Catapano, Alberico L.; Melander, Olle; Price, Jacqueline F.; Kumari, Meena; Deanfield, John E.; Kivimäki, Mika; Gertow, Karl; Baragetti, Andrea; Norata, Giuseppe Danilo; Humphries, Steve E.

    In: Circulation: Cardiovascular Genetics, Vol. 8, No. 5, 2015, p. 696-706.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  147. Published

    Functional pyruvate formate lyase pathway expressed with two different electron donors in Saccharomyces cerevisiae at aerobic growth. / Zhang, Yiming; Dai, Zongjie; Krivoruchko, Anastasia; Chen, Yun; Siewers, Verena; Nielsen, Jens.

    In: FEMS Yeast Research, Vol. 15, No. 4, fov024, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  148. E-pub ahead of print

    Gapped sequence alignment using artificial neural networks: application to the MHC class I system. / Andreatta, Massimo; Nielsen, Morten.

    In: Bioinformatics (Online), 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  149. Published

    Gene expression analysis identifies global gene dosage sensitivity in cancer. / Fehrmann, Rudolf S. N.; Karjalainen, Juha M.; Krajewska, Malgorzata; Westra, Harm-Jan; Maloney, David; Simeonov, Anton; Pers, Tune Hannes; Hirschhorn, Joel N.; Jansen, Ritsert C.; Schultes, Erik A.; van Haagenl, Herman H. H. B. M.; de Vries, Elisabeth G. E.; Meerman, Gerard J. te; Wijmenga, Cisca; van Vugt, Marcel A. T. M.; Franke, Lude.

    In: Nature Genetics, Vol. 47, No. 2, 2015, p. 115-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  150. Published

    Genetic studies of body mass index yield new insights for obesity biology. / Locke, Adam E.; Kahali, Bratati; Berndt, Sonja I.; Justice, Anne E.; R. Day, Felix; Powell, Corey; Vedantam, Sailaja; L. Buchkovich, Martin; Yang, Jian; Croteau-Chonka, Damien C.; Pers, Tune Hannes; Feenstra, Bjarke; Boyd, Heather A.; Geller, Frank; Lyssenko, Valeriya; Melbye, Mads.

    In: Nature, Vol. 518, No. 7538, 2015, p. 197-206.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  151. Published

    Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria. / Machado, Henrique; Sonnenschein, Eva; Melchiorsen, Jette; Gram, Lone.

    In: B M C Genomics, Vol. 16, No. 158, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  152. Published

    Genome scale models of yeast: towards standardized evaluation and consistent omic integration. / Sanchez, Benjamin J.; Nielsen, Jens.

    In: Integrative Biology, Vol. 7, No. 8, 2015, p. 846-858.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  153. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  154. Published

    Genomic Epidemiology. / Lund, Ole; Thomsen, Martin; Bellod Cisneros, Jose Luis; Ahrenfeldt, Johanne; Tetzschner, Anna Maria Malberg; Leekitcharoenphon, Shinny; Kaas, Rolf Sommer; Lukjancenko, Oksana; Aarestrup, Frank.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. Q-7.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  155. Published

    Genomic evidence for the Pleistocene and recent population history of Native Americans. / Raghavan, Maanasa; Steinruecken, Matthias; Harris, Kelley; Schiffels, Stephan; Rasmussen, Simon; DeGiorgio, Michael; Albrechtsen, Anders; Valdiosera, Cristina; Avila-Arcos, Maria C.; Malaspinas, Anna-Sapfo; Moreno-Mayar, J. Victor; Korneliussen, Thorfinn S.; Pierre, Tracey; Rasmussen, Morten; Campos, Paula F.; Damgaard, Peter De Barros; Allentoft, Morten E.; Seguin-Orlando, Andaine; Stafford, Thomas; Meltzer, David J.; Willerslev, Eske.

    In: Science, Vol. 349, No. 6250, aab3884, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  156. Published

    Genomic Evolution Of The Mdr Serotype O12 Pseudomonas Aeruginosa Clone. / Thrane, Sandra Wingaard; Taylor, Véronique L.; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Laroche, Jérôme; Pirnay, Jean-Paul; Lévesque, Roger C.; Lam, Joseph S.; Jelsbak, Lars.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 48-48.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  157. Published

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, Vol. 29, 2015, p. 297-303.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  158. Published

    Genomics and ecophysiology of heterotrophic nitrogen fixing bacteria isolated from estuarine surface water. / Bentzon-Tilia, Mikkel; Severin, Ina; Hansen, Lars H.; Riemann, Lasse.

    In: mBio (Print), Vol. 6, No. 4, e00929-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  159. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  160. Published

    Germ Cell Cancer and Multiple Relapses: Toxicity and Survival. / Lauritsen, Jakob; Kier, Maria G.G.; Mortensen, Mette S.; Bandak, Mikkel; Gupta, Ramneek; Holm, Niels V.; Agerbaek, Mads; Daugaard, Gedske.

    In: Journal of Clinical Oncology, Vol. 33, No. 28, 2015, p. 3116-3123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  161. Published
  162. Published
  163. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL6 mice fed a high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2015. Abstract from Keystone Symposia - Gut Microbiota Modulation of Host Physiology: The Search for Mechanism, Keystone, Colorado, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  164. Published
  165. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome. / Favero, Francesco; McGranahan, Nicholas; Salm, Maximilian P.; Birkbak, Nicolai Juul; Sanborn, J. Zachary ; Benz, Stephen C. ; Becq, Jennifer; Peden, John F. ; Kingsbury, Zoya ; Grocok, Russell J. ; Eklund, Aron Charles.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  166. Published

    Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling. / Basse, Astrid L.; Dixen, Karen; Yadav, Rachita; Tygesen, Malin P.; Qvortrup, Klaus; Kristiansen, Karsten; Quistorff, Bjorn; Gupta, Ramneek; Wang, Jun; Hansen, Jacob B.

    In: B M C Genomics, Vol. 16, No. 215, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  167. Published

    Glycoengineering of Chinese hamster ovary cells for enhanced erythropoietin N-glycan branching and sialylation. / Yin, Bojiao; Gao, Yuan; Chung, Cheng-yu; Yang, Shuang; Blake, Emily; C. Stuczynski, Mark; Tang, Juechun; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam; Zhang, Hui; Betenbaugh, Michael J.

    In: Biotechnology and Bioengineering (Print), Vol. 112, No. 11, 2015, p. 2343-2350.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  168. Published

    Hand eczema and stratum corneum ceramides. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Wilkinson, S.; Jemec, G. B. E.; Agner, T.

    In: Clinical and Experimental Dermatology, Vol. 40, No. 3, 2015, p. 243-246.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  169. Published
  170. Published

    Heterologous production of fungal secondary metabolites in Aspergilli. / Anyaogu, Diana Chinyere; Mortensen, Uffe Hasbro.

    In: Frontiers in Microbiology, Vol. 6, 77, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  171. Published

    High-level ethanol production by metabolically engineered Lactococcus lactis using economically renewable feedstocks. / Liu, Jianming; Solem, Christian; Jensen, Peter Ruhdal.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-1.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  172. Published
  173. Published

    High-throughput epitope identification for snakebite antivenom. / Engmark, Mikael; De Masi, Federico; Laustsen, Andreas Hougaard; Gutiérrez, José María; Lomonte, Bruno; Andersen, Mikael Rørdam; Lund, Ole.

    2015. Poster session presented at The International Sustainability Conference 2015, Falmer, Brighton, United Kingdom.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  174. Published
  175. Published

    Aspergillus nidulans as a platform for discovery and characterization of complex biosynthetic pathways. / Anyaogu, Diana Chinyere; Mortensen, Uffe Hasbro (Main supervisor); Workman, Mhairi (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 96 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  176. Published

    Identification of a Classical Mutant in the Industrial Host Aspergillus niger by Systems Genetics: LaeA Is Required for Citric Acid Production and Regulates the Formation of Some Secondary Metabolites. / Niu, Jing; Arentshorst, Mark; Nair, P. Deepa S.; Dai, Ziyu; Baker, Scott E.; Frisvad, Jens Christian; Nielsen, Kristian Fog; Punt, Peter J.; Ram, Arthur F. J.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 6, No. 1, 2015, p. 193-204.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  177. Published

    Identification of novel immune and barrier genes in atopic dermatitis by means of laser capture microdissection. / Esaki, Hitokazu; Ewald, David Adrian; Ungar, Benjamin; Rozenblit, Mariya; Zheng, Xiuzhong; Xu, Hui; Estrada, Yeriel D.; Peng, Xiangyu; Mitsui, Hiroshi; Litman, Thomas; Suarez-Farinas, Mayte; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  178. Published

    Identification of possible adverse drug reactions in clinical notes : the case of glucose-lowering medicines. / Warrer, Pernille; Jensen, Peter Bjødstrup; Aagaard, Lise; Jensen, Lars Juhl; Brunak, Søren; Krag, Malene Hammer; Rossing, Peter; Almdal, Thomas; Andersen, Henrik Ullits; Hansen, Ebba Holme.

    In: Journal of Research in Pharmacy Practice, Vol. 4, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  179. Published

    Identifying transcripts associated with aggressiveness in wheat yellow rust by transcriptomic sequencing. / Chen, Yan-Jun; Vogt, Josef Korbinian; Sørensen, Chris Khadgi; Rodriguez-Algaba, Julian; Sicheritz-Pontén, Thomas; Hovmøller, Mogens S.; Justesen, Annemarie Fejer.

    Abstracts : 14th International Cereal Rusts and Powdery Mildews Conference 2015. 2015. p. 106-106 (ARO Abstracts).

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  180. Published
  181. Published

    Lotus japonicus flowers are defended by a cyanogenic β-glucosidase with highly restricted expression to essential reproductive organs. / Lai, Daniela; Pičmanová, Martina; Abou Hachem, Maher ; Motawia, Mohammed Saddik; Olsen, Carl Erik; Møller, Birger Lindberg; Rook, Fred; Takos, Adam M.

    In: Plant Molecular Biology, Vol. 89, No. 1-2, 2015, p. 21-34.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  182. Accepted/In press
  183. Published
  184. Published

    Individualization of treatments with drugs metabolized by CES1: combining genetics and metabolomics. / Rasmussen, Henrik B.; Bjerre, Ditte; Linnet, Kristian; Juergens, Gesche; Dalhoff, Kim; Stefansson, Hreinn; Hankemeier, Thomas; Kaddurah-Daouk, Rima; Taboureau, Olivier ; Brunak, Søren; Houmann, Tine; Jeppesen, Pia; Pagsberg, Anne Katrine; Plessen, Kerstin; Dyrborg, Jørgen; Hansen, Peter R.; Hansen, Poul Erik; Hughes, Tim; Werge, Thomas.

    In: Pharmacogenomics, Vol. 16, No. 6, 2015, p. 649-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  185. Published
  186. Published

    Inflammatory Mediator Profiling of n-butanol Exposed Upper Airways in Individuals with Multiple Chemical Sensitivity. / Dantoft, Thomas Meinertz; Skovbjerg, Sine; Andersson, Linus; Claeson, Anna-Sara; Lind, Nina; Nordin, Steven; Pedersen, Susanne Brix.

    In: P L o S One, Vol. 10, No. 11, e0143534, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  187. Published
  188. Published

    Inherited coding variants at the CDKN2A locus influence susceptibility to acute lymphoblastic leukaemia in children. / Xu, Heng; Zhang, Hui; Yang, Wenjian; Yadav, Rachita; Morrison, Alanna C.; Qian, Maoxiang; Devidas, Meenakshi; Liu, Yu; Perez-Andreu, Virginia; Zhao, Xujie; Hansen, Torben; Holm, Jens-Christian; Gupta, Ramneek.

    In: Nature Communications, Vol. 6, 7553, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  189. Published

    Insights from 20 years of bacterial genome sequencing. / Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole; Kora, Guruprased; Wassenaar, Trudy; Poudel, Suresh; Ussery, David.

    In: Functional & Integrative Genomics, Vol. 15, No. 2, 2015, p. 141-161.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  190. Published

    Integrated approaches for assessing cell factories for sustainable bioprocesses. / Workman, Mhairi.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-3.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  191. Published

    Integration and visualization of non-coding RNA and protein interaction networks. / Junge, Alexander; Refsgaard, Jan Christian; Garde, Christian; Pan, Xiaoyong; Santos Delgado, Alberto; Anthon, Christian; Alkan, Ferhat; von Mering, Christian; Workman, Christopher; Jensen, Lars Juhl; Gorodkin, Jan.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  192. Published

    Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. / So, Jonathan; Pasculescu, Adrian; Dai, Anna Y.; Williton, Kelly; James, Andrew; Nguyen, Vivian; Creixell, Pau; Schoof, Erwin M.; Sinclair, John; Barrios-Rodiles, Miriam; Gu, Jun; Krizus, Aldis; Williams, Ryan; Olhovsky, Marina; Dennis, James W.; Wrana, Jeffrey L.; Linding, Rune; Jørgensen, Claus; Pawson, Tony; Colwill, Karen.

    In: Science Signaling, Vol. 8, No. 371, rs3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  193. Published

    Integrative Systems Biology Applied to Toxicology. / Kongsbak, Kristine Grønning; Vinggaard, Anne Marie (Main supervisor); Eklund, Aron Charles (Supervisor); Audouze, Karine Marie Laure (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2015. 167 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  194. Published
  195. Published

    Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing. / Vinner, Lasse ; Mourier, Tobias ; Friis-Nielsen, Jens; Gniadecki, Robert; Dybkaer, Karen; Rosenberg, Jacob; Levin Langhof, Jill; Flores Santa Cruz, David; Fonager, Jannik; Gonzalez-Izarzugaza, Jose Maria; Gupta, Ramneek; Sicheritz-Pontén, Thomas; Brunak, Søren; Willerslev, Eske; Nielsen, Lars Peter; Hansen, Anders Johannes .

    In: Scientific Reports, Vol. 5, 13201, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  196. Published

    Penicillium excelsum sp. nov from the Brazil Nut Tree Ecosystem in the Amazon Basin'. / Taniwaki, Marta Hiromi; Pitt, John I; Iamanaka, Beatriz T.; Massi, Fernanda P.; Fungaro, Maria Helena P; Frisvad, Jens Christian.

    In: P L o S One, Vol. 10, No. 12, e0143189, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  197. Published
  198. Published

    Isolation of Notoamide S and Enantiomeric 6-epi-Stephacidin A from the Fungus Aspergillus amoenus: Biogenetic Implications. / Kato, Hikaru; Nakahara, Takashi; Sugimoto, Kayo; Matsuo, Kanae; Kagiyama, Ippei; Frisvad, Jens Christian; Sherman, David H.; Williams, Robert M.; Tsukamoto, Sachiko.

    In: Organic Letters, Vol. 17, No. 3, 2015, p. 700-703.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  199. Published

    Kinome-wide Decoding of Network-Attacking Mutations Rewiring Cancer Signaling. / Creixell, Pau; Schoof, Erwin M; Simpson, Craig D.; Longden, James; Miller, Chad J.; Lou, Hua Jane; Perryman, Lara; Cox, Thomas R; Zivanovic, Nevena; Palmeri, Antonio; Wesolowska, Agata; Helmer-Citterich, Manuela; Ferkinghoff-Borg, Jesper; Itamochi, Hiroaki; Bodenmiller, Bernd; Erler, Janine T.; Turk, Benjamin E.; Linding, Rune.

    In: Cell, Vol. 163, No. 1, 2015, p. 202-217.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  200. Published
  201. Published
  202. Published

    Levan Enhances Associated Growth of Bacteroides, Escherichia, Streptococcus and Faecalibacterium in Fecal Microbiota. / Adamberg, Kaarel; Tomson, Katrin; Talve, Tiina; Pudova, Ksenia; Puurand, Marju; Visnapuu, Triinu; Alamäe, Tiina; Adamberg, Signe.

    In: P L o S One, Vol. 10, No. 12, e0144042, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  203. Published

    Levels of circulating MMP-7 degraded elastin are elevated in pulmonary disorders. / Kristensen, J.H.; Larsen, L.; Dasgupta, B.; Brodmerkel, C.; Curran, M.; Karsdal, M.A.; Sand, J.M.B.; Willumsen, N.; Knox, A.J.; Bolton, C.E.; Johnson, S.R.; Hägglund, Per; Svensson, Birte; Leeming, D. J.

    In: Clinical Biochemistry, Vol. 48, No. 16-17, 2015, p. 1083-1088.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  204. Published

    Limited dissemination of the wastewater treatment plant core resistome. / Munck, Christian; Albertsen, Mads; Telke, Amar; Ellabaan, Mostafa M Hashim; Nielsen, Per Halkjær; Sommer, Morten Otto Alexander.

    In: Nature Communications, Vol. 6, 8452, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  205. Published

    Limited similarity between plasmids encoding CTX-M-1 β-lactamase in Escherichia coli from humans, pigs, cattle, organic poultry layers and horses in Denmark. / Jakobsen, Lotte; Bortolaia, Valeria; Bielak, Eliza Maria; Moodley, Arshnee; Olsen, Stefan S.; Hansen, Dennis S.; Frimodt-Møller, Niels; Guardabassi, Luca; Hasman, Henrik.

    In: Journal of Global Antimicrobial Resistance, Vol. 3, No. 2, 2015, p. 132-136.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  206. E-pub ahead of print

    Linking Hydrolysis Performance to Trichoderma reesei Cellulolytic Enzyme Profile. / Lehmann, Linda Olkjær; Petersen, Nanna; I. Jørgensen, Christian; Olsson, Lisbeth; Stocks, Stuart M.; Jørgensen, Henrik S.; Hobley, Timothy John.

    In: Biotechnology and Bioengineering, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  207. Published
  208. Published
  209. Published

    Long-chain polyunsaturated fatty acids in breast-milk and erythrocytes and neurodevelopmental outcomes in Danish late-preterm infants. / Andersen, Stine Brøndum; Hellgren, Lars I; Larsen, Mette Krogh; Verder, Henrik; Lauritzen, Lotte.

    In: Journal of Pregnancy and Child Health, Vol. 2, No. 3, 160, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  210. Published

    Long-term risk of cardiovascular and cerebrovascular disease after removal of the colonic microbiota by colectomy: a cohort study based on the Danish National Patient Register from 1996 to 2014. / Jensen, Anders Boeck; Ajslev, Teresa Adeltoft; Brunak, Søren; Sørensen, Thorkild I A.

    In: Open Journal of Ecology, Vol. 5, No. 12, e008702, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  211. Published

    Long-term social dynamics drive loss of function in pathogenic bacteria. / Breum Andersen, Sandra; Marvig, Rasmus Lykke; Molin, Søren; Johansen, Helle Krogh; Griffin, Ashleigh S.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, No. 34, 2015, p. 10756-10761.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  212. Published

    LYRA, a webserver for lymphocyte receptor structural modeling.. / Schantz Klausen, Michael; Anderson, Mads Valdemar; Jespersen, Martin Closter; Nielsen, Morten; Marcatili, Paolo.

    In: Nucleic Acids Research, Vol. 43, No. W1, 2015, p. W349-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  213. Published
  214. Published

    Maternal fatty acid desaturase genotype correlates with infant immune responses at 6 months.. / Muc, Magdalena; Kreiner-Møller, Eskil; Larsen, Jeppe Madura; Birch, Sune; Brix, Susanne; Bisgaard, Hans; Lauritzen, Lotte.

    In: British Journal of Nutrition, Vol. 114, No. 6, 2015, p. 891-898.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  215. Published

    Mathematical modeling of yeast: a driver for innovation in biotechnology and human medicine. / Nielsen, Jens.

    In: Yeast, Vol. 32, No. S1, RT2-3, 2015, p. S50-S51.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  216. Published

    Mendelian Randomization Study of Body Mass Index and Colorectal Cancer Risk. / Thrift, Aaron P.; Gong, Jian; Peters, Ulrike; Chang-Claude, Jenny; Rudolph, Anja; Slattery, Martha L.; Chan, Andrew T.; Locke, Adam E.; Kahali, Bratati; Justice, Anne E.; Pers, Tune Hannes.

    In: Cancer Epidemiology, Biomarkers & Prevention, Vol. 24, No. 7, 2015, p. 1024-1031.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  217. Published

    Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways. / Ewald, David Adrian; Malajian, Dana; Krueger, James G.; Workman, Christopher T; Wang, Tianjiao; Tian, Suyan; Litman, Thomas; Guttman-Yassky, Emma; Suárez-Fariñas, Mayte.

    In: B M C Medical Genomics, Vol. 8, No. 60, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  218. Published

    Metabolomets ioniske komponenter bestemt ved kromatografi og massespektrometri. / Magdenoska, Olivera; Svenssen, Daniel Killerup; Knudsen, Peter Boldsen; Thorhallsdottir, Andrea; Workman, Mhairi; Nielsen, Kristian Fog.

    In: Dansk Kemi, Vol. 96, No. 5, 2015, p. 8-12.

    Publication: ResearchJournal article – Annual report year: 2015

  219. Published

    Metagenomic analysis of microbial communities in rapid sand filter treating groundwater. Community diversity and metabolic potential. / Palomo, Alejandro; Rasmussen, S.; Sicheritz-Pontén, Thomas; Smets, Barth F.

    6th Congress of European Microbiologists (FEMS 2015) abstracts. 2015. FEMS-2068.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  220. Published
  221. Published

    Metagenomic heterogeneity explains dual immune effects of endotoxins. / Pedersen, Susanne Brix; Eriksen, Carsten; Larsen, Jeppe Madura; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 277-280.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  222. Published

    Methods for modeling chinese hamster ovary (cho) cell metabolism.. / Herrgard, Markus (Inventor); Pedersen, Lasse Ebdrup (Inventor); Lewis, Nathan E. (Inventor); Bruntse, Anders Bech (Inventor).

    IPC No.: C12N5/07. Patent No.: WO2015010088. Jul 19, 2013.

    Publication: ResearchPatent – Annual report year: 2015

  223. Published

    Microbial Biofilm as a Smart Material. / Garde, Christian; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Sensors, Vol. 15, No. 2, 2015, p. 4229-4241.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  224. Published

    Mimicking Seawater For Culturing Marine Bacteria. / Rygaard, Anita Mac; Sonnenschein, Eva; Gram, Lone; Schmidt Thøgersen, Mariane.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 63-63.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  225. Published

    miR-18b overexpression identifies mantle cell lymphoma patients with poor outcome and improves the MIPI-B prognosticator. / Husby, Simon; Ralfkiær, Ulrik Methner; Garde, Christian; Zandi, Roza; Ek, Sara; Kolstad, Arne; Jerkeman, Mats; Laurell, Anna; Räty, Riikka; Pedersen, Lone B.; Pedersen, Anja; Ehinger, Mats; Sundström, Christer; Karjalainen-Lindsberg, Marja-Liisa; Delabie, Jan; Clasen-Linde, Erik; Brown, Peter; Cowland, Jack B.; Workman, Christopher; Geisler, Christian H.; Grønbæk, Kirsten.

    In: Blood, Vol. 125, No. 17, 2015, p. 2669-2677.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  226. Published

    Modular pathway rewiring enables L-ornithine production in engineered yeast. / Qin, Jiufu; Zhou, Yongjin; Krivoruchko, Anastasia; Huang, Mingtao; Liu, Lifang; Khoomrung, Sakda; Siewers, Verena; Jiang, Bo; Nielsen, Jens.

    In: Yeast, Vol. 32, No. S1, PS6-45, 2015, p. S164-S165.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  227. Published

    Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition. / Beatson, Scott A.; Ben Zakour, Nouri L.; Totsika, Makrina; Forde, Brian M.; Watts, Rebecca E.; Mabbett, Amanda N.; Szubert, Jan M.; Sarkar, Sohinee; Phan, Minh-Duy; Peters, Kate M.; Petty, Nicola K.; Alikhan, Nabil-Fareed; Sullivan, Mitchell J.; Gawthorne, Jayde A.; Stanton-Cook, Mitchell; Nhu, Nguyen Thi Khanh; Chong, Teik Min; Yin, Wai-Fong; Chan, Kok-Gan; Hancock, Viktoria ; Ussery, David W.; Ulett, Glen C.; Schembri, Mark A.

    In: Infection and Immunity, Vol. 83, No. 5, 2015, p. 1749-1764.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  228. Published

    Monitoring and control of protein production in fungi. / Schalén, Martin; Workman, Mhairi (Main supervisor); Nielsen, Jakob Blæsbjerg (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2015. 124 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  229. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Molecular Immunology, Vol. 68, No. 2, Part A, 2015, p. 134-134.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  230. Published

    MTR-18 Predictive Biomarkers Of Bevacizumab Response In Recurrent Glioblastoma Patients. / Urup, Thomas; Michaelsen, Signe Regner; Olsen, Lars Rønn; Toft, Anders; Christensen, Ib Jarle; Grunnet, Kirsten; Broholm, Helle; Kosteljanetz, Michael; Poulsen, Hans Skovgaard; Lassen, Ulrik.

    In: Neuro-Oncology, Vol. 17, No. suppl. 5, 2015, p. v128-v128.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  231. Published

    Multidimensional Clusters of CD4+T Cell Dysfunction Are Primarily Associated with the CD4/CD8 Ratio in Chronic HIV Infection. / Frederiksen, Juliet Wairimu; Buggert, Marcus; Noyan, Kajsa; Nowak, Piotr; Sönnerborg, Anders; Lund, Ole; Karlsson, Annika C.

    In: P L o S One, Vol. 10, No. 9, e0137635, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  232. Published

    Multilocus Heterozygosity and Coronary Heart Disease: Nested Case-Control Studies in Men and Women. / Mukamal, Kenneth J.; Jensen, Majken K.; Pers, Tune Hannes; Pai, Jennifer K.; Kraft, Peter; Rimm, Eric B.

    In: PLOS ONE, Vol. 10, No. 5, e0124847, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  233. Published

    Multilocus Sequence Typing And Antibiotic Resistance Of Staphylococcus Aureus Isolated From The Brazilian Dairy Industry. / Dittmann, Karen K.; Chaul, Luiza; Lee, Sarah; Corassin, Carlos; de Martinis, Elaine; Alves, Virgínia; Gram, Lone; Oxaran, Virginie.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 57-57.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  234. Published
  235. Published

    Multi-omic profiling of EPO-producing CHO cell panel reveals metabolic adaptation to heterologous protein production. / Ley, Daniel; Kazemi Seresht, Ali; Engmark, Mikael; Magdenoska, Olivera; Nielsen, Kristian Fog; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2015. Poster session presented at 24th ESACT meeting, Barcelona, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  236. Published

    Multiple nucleophilic elbows leading to multiple active sites in a single module esterase from Sorangium cellulosum. / Udatha, D.B.R.K. Gupta; Madsen, Karina Marie; Panagiotou, Gianni; Olsson, Lisbeth.

    In: Journal of Structural Biology, Vol. 190, No. 3, 2015, p. 314-327.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  237. Published

    Name Changes in Medically Important Fungi and Their Implications for Clinical Practice. / de Hoog, G. Sybren; Chaturvedi, Vishnu; Denning, David W.; Dyer, Paul S.; Frisvad, Jens Christian; Geiser, David; Gräser, Yvonne; Guarro, Josep; Haase, Gerhard; Kwon-Chung, Kyung-Joo; Meis, Jacques F.; Meyer, Wieland; Pitt, John I.; Samson, Robert A.; Taylor, John W.; Tintelnot, Kathrin; Vitale, Roxana G.; Walsh, Thomas J.; Lackner, Michaela.

    In: Journal of Clinical Microbiology, Vol. 53, No. 4, 2015, p. 1056-1062.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  238. Published

    Naturalizing semiotics: The triadic sign of Charles Sanders Peirce as a systems property. / Kilstrup, Mogens.

    In: Progress in Biophysics & Molecular Biology, Vol. 119, No. 3, 2015, p. 563-575.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  239. Published

    Neonates with reduced neonatal lung function have systemic low-grade inflammation. / Chawes, Bo L.K.; Stokholm, Jakob; Bønnelykke, Klaus; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 6, 2015, p. 1450-1456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  240. Published

    New genetic loci link adipose and insulin biology to body fat distribution. / Shungin, Dmitry; Winkler, Thomas W; Croteau-Chonka, Damien C.; Ferreira, Teresa; Locke, Adam E; Mägi, Reedik; Strawbridge, Rona J.; Pers, Tune Hannes; Fischer, Krista; Justice, Anne E; Folkersen, Lasse; Lyssenko, Valeriya.

    In: Nature, Vol. 518, No. 7538, 2015, p. 187-96.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  241. Published

    New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA. / Wales, Nathan; Carøe, Christian; Sandoval-Velasco, Marcela; Gamba, Cristina; Barnett, Ross; Samaniego, Jose Alfredo; Madrigal, Jazmin Ramos; Orlando, Ludovic; Gilbert, Thomas P.

    In: Biotechniques, Vol. 59, No. 6, 2015, p. 368-371.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  242. Published

    N-Glycosylation optimization of recombinant antibodies in CHO cell through process and metabolic engineering. / Fan, Yuzhou; Andersen, Mikael Rørdam (Supervisor); Weilguny, Dietmar (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 158 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  243. Published

    Nitrogenase expression in estuarine bacterioplankton influenced by organic carbon and availability of oxygen. / Severin, Ina; Bentzon-Tilia, Mikkel; Moisander, Pia H.; Riemann, Lasse.

    In: F E M S Microbiology Letters, Vol. 362, No. 14, fnv105, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  244. Published

    Novel Path Towards Colistin Resistance In Pseudomonas Aeruginosa During Chronic Infection Involves Polymorphisms In Uncharacterized Glycosyltransferase Gene. / Hermansen, Grith Miriam Maigaard; Jelsbak, Lars.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 32-33.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  245. Published

    Novel, Pseudomonas-derived Antifungal Lipopeptides From A Disease Suppressive Soil In Greenlandic Potato Fields. / Hennessy, Rosanna Catherine; Michelsen, Charlotte F.; Glaring, Mikkel A.; Phippen, Christopher; Nielsen, Kristian Fog; Olsson, Stefan; Stougaard, Peter.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 19-19.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  246. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Gonzalez-Izarzugaza, Jose Maria; Grove, Jakob; Belling, Kirstine C.; Bork-Jensen, Jette; Huang, Shujia; Dam-Als, Thomas; Li, Shengting; Yadav, Rachita; Yadav, Rachita; Rubio García, Arcadio; Lescai, Francesco; Demontis, Ditte ; Rao, Junhua ; Ye, Weijian ; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Wang, Ou ; Cheng, Xiaofang ; Flores Santa Cruz, David; Rydza, Emil Karol; Rapacki, Kristoffer; Sørensen, John Damm; Chmura, Piotr Jaroslaw; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I. A.; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D.; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Jun, Wang; Gupta, Ramneek; Villesen, Palle ; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  247. Published

    NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods. / Jensen, Kasper; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: Nucleic Acids Research, Vol. 43, 2015, p. D940-D945.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  248. Accepted/In press

    Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans. / Donkin, Ida; Versteyhe, Soetkin; Ingerslev, Lars R.; Qian, Kui; Mechta, Mie; Nordkap, Loa; Mortensen, Brynjulf; Appel, Emil Vincent R; Jørgensen, Niels; Kristiansen, Viggo B.; Hansen, Torben; Workman, Christopher; Zierath, Juleen R.; Barrès, Romain.

    In: Cell Metabolism, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  249. Published

    Obesity-associated fecal microbiota from human modulates body mass and metabolites in mice. / Zhang, Li; Bahl, Martin Iain; Hellgren, Lars; Roager, Henrik Munch; Fonvig, Cilius Esmann; Holm, Jens-Christian ; Hansen, Torben; Pedersen, Oluf; Licht, Tine Rask.

    2015. Abstract from EMBL Conference 2015, Heidelberg, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  250. Published

    Oligosaccharide and Substrate Binding in the Starch Debranching Enzyme Barley Limit Dextrinase. / Møller, Marie Sofie; Windahl, Michael Skovbo; Sim, Lyann; Bøjstrup, Marie; Abou Hachem, Maher ; Hindsgaul, Ole; Palcic, Monica; Svensson, Birte; Henriksen, Anette.

    In: Journal of Molecular Biology, Vol. 427, No. 6, Part B, 2015, p. 1263-1277.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  251. Published
  252. Published

    Optimering af vandforsyningens moniteringsstrategi ved hjælp af GIS-analyse. / Albrechtsen, Hans-Jørgen (Author); Christensen, Sarah Christine Boesgaard (Author); Grønkjær, Thomas (Author); Kirstein, Jonas (Author); Larsen, Sille Lyster (Author); Rygaard, Martin (Author).

    2015. Dansk Vand Konference 2014, Århus, Denmark, 18/11/2014.

    Publication: ResearchSound/Visual production (digital) – Annual report year: 2015

  253. Published

    Oxidative stress response pathways: Fission yeast as archetype. / Papadakis, Manos A.; Workman, Christopher.

    In: Critical Reviews in Microbiology, Vol. 41, No. 4, 2015, p. 520-535.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  254. Published

    P0525 : N-Acetylated alpha smooth muscle actin levels are increased in hepatic fibrosis but decreased in hepatocellular carcinoma. / Nielsen, M.J.; Nielsen, S.H.; Hansen, N.U.B.; Kristensen, Jacob Hull; Karsdal, M.A.; Leeming, D. J.

    In: Journal of Hepatology, Vol. 62, P0525, 2015, p. S512.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  255. Published
  256. Published

    Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets. / Ali, Amjad; Naz, Anam; Soares, Siomar C.; Bakhtiar, Marriam; Tiwari, Sandeep; Hassan, Syed S.; Hanan, Fazal; Ramos, Rommel; Pereira, Ulisses; Barh, Debmalya; Pereira Figueiredo, Henrique Cesar; Ussery, David; Miyoshi, Anderson; Silva, Artur; Azevedo, Vasco.

    In: Journal of Biomedicine and Biotechnology, Vol. 2015, 139580, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  257. Published

    Pathway and network analysis of cancer genomes. / Creixell, Pau; Reimand, Jueri; Haider, Syed; Wu, Guanming; Shibata, Tatsuhiro; Vazquez, Miguel; Mustonen, Ville; Gonzalez-Perez, Abel; Pearson, John; Sander, Chris; Linding, Rune.

    In: Nature Methods, Vol. 12, No. 7, 2015, p. 615-621.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  258. Published

    Penicillium salamii, a new species occurring during seasoning of dry-cured meat. / Perrone, Giancarlo; Samson, Robert A.; Frisvad, Jens Christian; Susca, Antonia; Gunde-Cimerman, Nina; Epifani, Filomena; Houbraken, Jos.

    In: International Journal of Food Microbiology, Vol. 193, 2015, p. 91-98.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  259. Published

    Peptaibol, Secondary‐Metabolite, and Hydrophobin Pattern of Commercial Biocontrol Agents Formulated with Species of the Trichoderma harzianum Complex. / Degenkolb, Thomas; Nielsen, Kristian Fog; Dieckmann, Ralf; Branco‐Rocha, Fabiano; Chaverri, Priscila; Samuels, Gary J.; Thrane, Ulf; von Döhren, Hans; Vilcinskas, Andreas; Brückner, Hans.

    In: Chemistry & Biodiversity, Vol. 12, No. 4, 2015, p. 662-684.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  260. Published

    Phaeobacter inhibens as Probiotic Bacteria in Non-Axenic Artemia and Algae Cultures. / Grotkjær, Torben; D'Alvise, Paul; Bentzon-Tilia, Mikkel; Gram, Lone.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. 2015. p. 74-74.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  261. Published

    Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors. / Gram, Lone; Rasmussen, Bastian Barker; Wemheuer, Bernd; Bernbom, Nete; Ng, Yin; Porsby, Cisse Hedegaard; Breider, Sven; Brinkhoff, Thorsten.

    In: Systematic and Applied Microbiology, Vol. 38, 2015, p. 483-493.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  262. Published

    Physiological and proteome studies of responses to heat stress during grain filling in contrasting wheat cultivars. / Wang, Xiao; Dinler, Burcu Seckin; Vignjevic, Marija; Jacobsen, Susanne; Wollenweber, Bernd .

    In: Plant Science, Vol. 230, 2015, p. 33-50.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  263. Published

    Physiological characterization of three different Yarrowia lipolytica strains growing on glycerol, glucose, xylose and arabinose. / Lubuta, Patrice; Workman, Mhairi.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-12.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  264. Published
  265. Published

    Population genetic differentiation of height and body mass index across Europe. / Robinson, Matthew R.; Hemani, Gibran; Medina-Gomez, Carolina; Mezzavilla, Massimo; Esko, Tonu; Shakhbazov, Konstantin; Powell, Joseph E.; Vinkhuyzen, Anna; Berndt, Sonja I.; Gustafsson, Stefan; Pers, Tune Hannes; Werge, Thomas M.

    In: Nature Genetics, Vol. 47, No. 11, 2015, p. 1357-1362.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  266. Published

    Population genomics of Bronze Age Eurasia. / Allentoft, Morten E.; Sikora, Martin; Sjögren, Karl-Göran; Rasmussen, Simon; Rasmussen, Morten; Stenderup, Jesper; Damgaard, Peter B.; Schroeder, Hannes; Ahlström, Torbjorn; Vinner, Lasse; Malaspinas, Anna-Sapfo; Margaryan, Ashot; Lynnerup, Niels; Harvig, Lise; Frei, Karin; Merkyte, Inga; Orlando, Ludovic; Sicheritz-Pontén, Thomas; Brunak, Søren; Willerslev, Eske.

    In: Nature, Vol. 522, No. 7555, 2015, p. 167-.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  267. Published

    Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosacystic fibrosis bacterial isolates. / Friman, Ville-Petri; Soanes-Brown, Daniel; Sierocinski, Pawel; Molin, Søren; Johansen, Helle Krogh; Merabishvili, Maya; Pirnay, Jean-Paul; De Vos, Daniel; Buckling, Angus.

    In: Journal of Evolutionary Biology, Vol. 29, No. 1, 2015, p. 188-198.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  268. Published

    Predicting facial characteristics from complex polygenic variations. / Fagertun, Jens; Wolffhechel, Karin Marie Brandt; Pers, Tune ; Nielsen, Henrik Bjørn; Gudbjartsson, Daniel ; Stefansson, Hreinn; Stefansson, Kari; Paulsen, Rasmus Reinhold; Jarmer, Hanne Østergaard.

    In: Forensic Science International: Genetics, Vol. 19, 2015, p. 263-268.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  269. Published

    Prediction of Antibody Epitopes. / Nielsen, Morten; Marcatili, Paolo.

    Peptide Antibodies. Vol. 1348 Springer, 2015. p. 23-32 (Methods in Molecular Biology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  270. Published

    Pregnancy induces an insulin resistance promotin hepatic ceramide phenotype in mice. / Hellgren, Lars; Ingvorsen, Camilla.

    In: Diabetologia, Vol. 58, No. S1, 2015, p. S491-S492.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  271. Published

    Prelabor cesarean section bypasses natural immune cell maturation. / Thysen, Anna Hammerich; Larsen, Jeppe Madura; Rasmussen, Morten Arendt; Stokholm, Jakob; Bønnelykke, Klaus; Bisgaard, Hans Flinker; Pedersen, Susanne Brix.

    In: Journal of Allergy and Clinical Immunology, Vol. 136, No. 4, 2015, p. 1123-1125.e6.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  272. Published

    Production of cellulolytic enzymes from ascomycetes : comparison of solid state and submerged fermentation. / Hansen, Gustav Hammerich; Lübeck, Mette; Frisvad, Jens Christian; Lübeck, Peter S.; Andersen, Birgitte.

    In: Process Biochemistry, Vol. 50, No. 9, 2015, p. 1327-1341.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  273. Published

    Protective effects of transforming growth factor β2 in intestinal epithelial cells by regulation of proteins associated with stress and endotoxin responses. / Nguyen, Duc Ninh; Jiang, Pingping; Jacobsen, Susanne; Sangild, Per Torp; Bendixen, Emøke; Chatterton, Dereck E. W.

    In: P L o S One, Vol. 10, No. 2, e0117608, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  274. Published

    Protein raftophilicity. How bioinformatics can help membranologists. / Nielsen, Henrik; Sperotto, Maria Maddalena.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  275. Published
  276. Published

    Proteomics in Cell Culture: From Genomics to Combined ‘Omics for Cell Line Engineering and Bioprocess Development. / Heffner, Kelley; Kaas, Christian Schrøder; Kumar, Amit; Baycin-Hizal, Deniz; Betenbaugh, Michael.

    Animal Cell Culture. Vol. 9 Springer, 2015. p. 591-614 (Cell Engineering).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  277. Published

    Quantification of biomolecules in herring (Clupea harengus) industry processing waters and their recovery using electroflocculation and ultrafiltration. / Osman, Ali; Gringer, Nina; Svendsen, Tore; Yuan, Linfeng; Hosseini, Seyed Vali; Baron, Caroline P.; Undeland, Ingrid.

    In: Food and Bioproducts Processing, Vol. 96, 2015, p. 198-210.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  278. Published
  279. Published

    Range Wide Phylogeography of Dactylopius coccus (Hemiptera: Dactylopiidae). / Van Dam, Alex; Portillo Martinez, Liberato; Jeri Chavez, Antonio; May, Bernie P.

    In: Annals of the Entomological Society of America , Vol. 108, No. 3, 2015, p. 299-310.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  280. Published
  281. Published
  282. Published

    Reconstitution of Biosynthetic Machinery for the Synthesis of the Highly Elaborated Indole Diterpene Penitrem. / Liu, Chengwei; Tagami, Koichi; Minami, Atsushi; Matsumoto, Tomoyuki; Frisvad, Jens Christian; Suzuki, Hideyuki; Ishikawa, Jun; Gomi, Katsuya; Oikawa, Hideaki.

    In: Angewandte Chemie International Edition, Vol. 54, No. 19, 2015, p. 5748-5752.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  283. Published

    Reconstitution of Biosynthetic Machinery for the Synthesis of the Highly Elaborated Indole Diterpene Penitrem. / Liu, Chengwei; Tagami, Koichi; Minami, Atsushi; Matsumoto, Tomoyuki; Frisvad, Jens Christian; Suzuki, Hideyuki; Ishikawa, Jun; Gomi, Katsuya; Oikawa, Hideaki.

    In: Angewandte Chemie, Vol. 54, No. 19, 2015, p. 4840-5844.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  284. Published

    Reduced ex vivo stimulated IL-6 response in infants randomized to fish oil from 9 to 18 months, especially among PPARG2 and COX2 wild types. / Harslof, Laurine B. S.; Damsgaard, Camilla T.; Andersen, Anders D.; Aakjaer, Ditte L.; Michaelsen, Kim F.; Hellgren, Lars I.; Frøkiær, Hanne; Vogel, Ulla; Lauritzen, Lotte.

    In: Prostaglandins, Leukotrienes & Essential Fatty Acids, Vol. 94, 2015, p. 21-27.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  285. Published

    Relationship of postoperative thrombocytosis and survival of patients with colorectal cancer. / Josa, Valeria; Krzystanek, Marcin; Eklund, Aron Charles; Salamon, Ferenc; Zarand, Attila; Szallasi, Zoltan Imre; Baranyai, Zsolt.

    In: International Journal of Surgery, Vol. 18, 2015, p. 1-6.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  286. Published

    Renal impairment and late toxicity in germ-cell cancer survivors. / Lauritsen, J.; Mortensen, M. S.; Kier, M. G. G.; Christensen, I. J.; Agerbaek, M.; Gupta, Ramneek; Daugaard, G.

    In: Annals of Oncology, Vol. 26, No. 1, 2015, p. 173-178.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  287. Published

    Review on Mycotoxin Issues in Ruminants: Occurrence in Forages, Effects of Mycotoxin Ingestion on Health Status and Animal Performance and Practical Strategies to Counteract Their Negative Effects. / Gallo, Antonio; Giubert, Gianluca; Frisvad, Jens Christian; Bertuzzi, Terenzio; Nielsen, Kristian Fog.

    In: Toxins, Vol. 7, No. 8, 2015, p. 3057-3111.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  288. Published
  289. Published

    Rnaseq As A Method To Study Microbial Interactions Arising In The Cystic Fibrosis Airways. / Amador Hierro, Cristina Isabel; Jelsbak, Lars.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 68-68.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  290. Published

    RNA sequencing atopic dermatitis transcriptome profiling provides insights into novel disease mechanisms with potential therapeutic implications. / Suárez-Fariñas, Mayte; Ungar, Benjamin; Correa da Rosa, Joel; Ewald, David Adrian; Rozenblit, Mariya; Gonzalez, Juana; Xu, Hui; Zheng, Xiuzhong; Peng, Xiangyu; Estrada, Yeriel D.; Dillon, Stacey ; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 5, 2015, p. 1218-1227.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  291. Published

    Rumen microbial communities influence metabolic phenotypes in lambs. / Morgavi, Diego P.; Rahahao-Paris, Estelle; Popova, Milka; Boccard, Julien; Nielsen, Kristian Fog; Boudra, Hamid.

    In: Frontiers in Microbiology, Vol. 6, 1060, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  292. E-pub ahead of print

    Scale-down of continuous protein producing Saccharomyces cerevisiae cultivations using a two compartment system. / Wright, Naia Risager; Rønnest, Nanna Petersen; Thykær, Jette.

    In: Biotechnology Progress, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  293. Published

    Segregation of chromosome arms in growing and non-growing Escherichia coli cells. / Woldringh, Conrad L.; Hansen, Flemming G.; Vischer, Norbert O. E.; Atlung, Tove.

    In: Frontiers in Microbiology, Vol. 6, 448, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  294. Published

    Selecting key toxins for focused development of elapid snake antivenoms and inhibitors guided by a Toxicity Score. / Laustsen, Andreas H.; Lohse, Brian; Lomonte, Bruno; Engmark, Mikael; Maria Gutierrez, Jose.

    In: Toxicon, Vol. 104, 2015, p. 43-45.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  295. Published

    Sequencing the CHO DXB11 genome reveals regional variations in genomic stability and haploidy. / Kaas, Christian Schrøder; Kristensen, Claus; Betenbaugh, Michael J.; Andersen, Mikael Rørdam.

    In: B M C Genomics, Vol. 16, No. 160, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  296. Published
  297. Published

    Serine/threonine/tyrosine phosphorylation regulates DNA binding of bacterial transcriptional regulators. / Kalantari, Aida; Derouiche, Abderahmane; Shi, Lei; Mijakovic, Ivan.

    In: Microbiology, Vol. 161, No. 9, 2015, p. 1720-1729.

    Publication: Research - peer-reviewReview – Annual report year: 2015

  298. Published

    Serological assessment of neutrophil elastase activity on elastin during lung ECM remodeling. / Kristensen, Jacob Hull; Karsdal, Morten A.; Sand, Jannie M. B.; Willumsen, Nicholas; Diefenbach, Claudia; Svensson, Birte; Hägglund, Per; Oersnes-Leeming, Diana J.

    In: BMC Pulmonary Medicine, Vol. 15, No. 53, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  299. Published

    SETD2 loss-of-function promotes renal cancer branched evolution through replication stress and impaired DNA repair. / Kanu, N.; Grönroos, E.; Martinez, P.; Burrell, R. A.; Yi Goh, X.; Bartkova, J.; Maya-Mendoza, A.; Mistrík, M.; Rowan, A. J.; Patel, H.; Rabinowitz, A.; East, P.; Wilson, G.; Santos, C. R.; McGranahan, N.; Gulati, S.; Gerlinger, M.; Birkbak, Nicolai Juul; Joshi, Tejal; Alexandrov, L. B.; Stratton, M. R.; Powles, T.; Matthews, N.; Bates, P. A.; Stewart, A.; Szallasi, Zoltan Imre; Larkin, J.; Bartek, J.; Swanton, C.

    In: Oncogene, Vol. 34, 2015, p. 5699-5708.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  300. Published

    Shared Genetic Basis for Type 1 Diabetes, Islet Autoantibodies, and Autoantibodies Associated With Other Immune-Mediated Diseases in Families With Type 1 Diabetes. / Brorsson, Caroline Anna; Pociot, Flemming.

    In: Diabetes Care, Vol. 38, No. Supplement 2, 2015, p. S8-S13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  301. Published

    Snake venomics of monocled cobra (Naja kaouthia) and investigation of human IgG response against venom toxins. / Laustsen, Andreas Hougaard; Gutiérrez, José María; Lohse, Brian; Rasmussen, Arne R.; Fernández, Julián; Milbo, Christina; Lomonte, Bruno.

    In: Toxicon, Vol. 99, 2015, p. 23-35.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  302. Published

    SNPsnap: a Web-based tool for identification and annotation of matched SNPs. / Pers, Tune Hannes; Timshel, Pascal; Hirschhorn, Joel N.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 418-420.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  303. Published
  304. Published

    Somatic Cell Fusions Reveal Extensive Heterogeneity in Basal-like Breast Cancer. / Su, Ying; Subedee, Ashim; Bloushtain-Qimron, Noga; Savova, Virginia; Krzystanek, Marcin; Li, Lewyn; Marusyk, Andriy; Tabassum, Doris P.; Zak, Alexander; Szallasi, Zoltan Imre.

    In: Cell Reports, Vol. 11, No. 10, 2015, p. 1549-1563.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  305. Published

    Spatio-temporal appearance of α-amylase and limit dextrinase in barley aleurone layer in response to gibberellic acid, abscisic acid and salicylic acid.. / Shahpiri, Azar; Talaei, Nasim; Finnie, Christine.

    In: Journal of the Science of Food and Agriculture, Vol. 95, No. 1, 2015, p. 141-147.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  306. Published

    Statin Resistance and Export : - development of a yeast cell factory for compactin. / Ley, Ana; Frandsen, Rasmus John Normand (Supervisor); Mortensen, Uffe Hasbro (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 200 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  307. Published

    Stepwise emergence of azole, echinocandin and amphotericin B multidrug resistance in vivo in Candida albicans orchestrated by multiple genetic alterations. / Jensen, Rasmus Hare; Thyssen Astvad, Karen Marie ; Vale Silva, Luis; Sanglard, Dominique; Jørgensen, Rene; Nielsen, Kristian Fog; Glintborg Mathiase, Estella; Doroudian, Ghazal; Perlin, David Scott ; Cavling Arendrup, Maiken.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 9, 2015, p. 2151-2555.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  308. Published

    Structural Characterization of Peptide Antibodies. / Chailyan, Anna; Marcatili, Paolo.

    Peptide Antibodies. Vol. 1348 Springer, 2015. p. 205-214 (Methods in Molecular Biology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  309. Published

    Structural Conservation Despite Huge Sequence Diversity Allows EPCR Binding by the PfEMP1 Family Implicated in Severe Childhood Malaria. / Lau, Clinton K.Y.; Turner, Louise; Jespersen, Jakob S.; Lowe, Edward D. ; Petersen, Bent; Wang, Christian W.; Petersen, Jens E.V.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas; Higgins, Matthew K.

    In: Cell Host & Microbe, Vol. 17, No. 1, 2015, p. 118-129.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  310. Published

    Structural insights into the inhibition of cellobiohydrolase Cel7A by xylo‐oligosaccharides. / Momeni, Majid Haddad; Ubhayasekera, Wimal; Sandgren, Mats; Ståhlberg, Jerry; Hansson, Henrik.

    In: F E B S Journal, Vol. 282, No. 11, 2015, p. 2167-2177.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  311. Published

    Sublethal Concentrations Of Antibiotics Cause Shift To Anaerobic Metabolism In Listeria Monocytogenes And Induce Phenotypes Linked To Antibiotic Tolerance. / Knudsen, Gitte Maegaard; Ng, Yin; Gram, Lone.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 29-30.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  312. Published

    Substantial Molecular Evolution In Prolonged Latent Mycobacterium Tuberculosis Infections In Humans. / Lillebaek, Troels; Norman, Anders; Rasmussen, Erik Michael; B. Folkvardsen, Dorte; Marvig, Rasmus; Bengaard Andersen, Åse; Jelsbak, Lars.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 50-50.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  313. Published
  314. Published

    Synthetic Yeast Based Cell Factories for the Production of Plant Natural Colors. / Coumou, Hilde; Petersen, Pia D.; Mortensen, Matias Munck; Frandsen, Rasmus John Normand; Thrane, Ulf; T. Okkels, Finn; Mortensen, Uffe Hasbro.

    2015. Poster session presented at 2015 Synthetic Biology: Engineering, Evolution & Design (SEED), Boston, United States.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  315. Published

    Tabhu: tools for antibody humanization.. / Olimpieri, Pier Paolo; Marcatili, Paolo; Tramontano, Anna.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 434-435.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  316. Published

    Targeting Human Cancer by a Glycosaminoglycan Binding Malaria Protein. / Salanti, Ali; Clausen, Thomas M.; Agerbæk, Mette Ø.; Al Nakouzi, Nader; Dahlbäck, Madeleine; Oo, Htoo Z.; Lee, Sherry; Gustavsson, Tobias; Rich, Jamie R.; Hedberg, Bradley J.; Mao, Yang; Barington, Line; Pereira, Marina A.; LoBello, Janine; Endo, Makoto; Fazli, Ladan; Soden, Jo; Wang, Chris K.; Sander, Adam F.; Dagil, Robert; Thrane, Susan; Holst, Peter J.; Meng, Le; Favero, Francesco; Weiss, Glen J.; Nielsen, Morten A.; Freeth, Jim; Nielsen, Torsten O.; Zaia, Joseph; Tran, Nhan L.; Trent, Jeff; Babcook, John S.; Theander, Thor G.; Sørensen, Poul H.; Daugaard, Mads.

    In: Cancer Cell, Vol. 28, No. 4, 2015, p. 500-514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  317. Published

    Taxonomic and metagenomic profiling of rapid sand filter microbiome reveals a high Nitrospira incidence. / Palomo, Alejandro; Gülay, Arda; Rasmussen, Simon; Sicheritz-Pontén, Thomas; Smets, Barth F.

    4th International Conference on Nitrification (and Related Processes): Poster Abstracts. Edmonton, Canada, 2015. EE-1.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  318. Published

    Taxonomy, chemodiversity, and chemoconsistency of Aspergillus, Penicillium, and Talaromyces species. / Frisvad, Jens Christian.

    In: Frontiers in Microbiology, Vol. 5, 773, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  319. Published

    Ten years of subproteome investigations in lactic acid bacteria: A key for food starter and probiotic typing. / Mangiapane, E.; Mazzoli, R.; Pessione, A.; Svensson, Birte; Riedel, K.; Pessione, E.

    In: Journal of Proteomics, Vol. 127, No. Part B, 2015, p. 332-339.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  320. Published

    Testing the Utility of a Data-Driven Approach for Assessing BMI from Face Images. / Wolffhechel, Karin Marie Brandt; Hahn, Amanda C.; Jarmer, Hanne Østergaard; Fisher, Claire I.; Jones, Benedict C.; DeBruine, Lisa M.

    In: P L o S One, Vol. 10, No. 10, e0140347, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  321. Published

    The Danish ELIXIR Node. / Brunak, Søren; Løngreen, Peter; Rapacki, Kristoffer; Sperotto, Maria Maddalena.

    In: Biozoom, Vol. 17, No. 2, 2015, p. 8-9.

    Publication: CommunicationJournal article – Annual report year: 2015

  322. Published
  323. Published

    The effect of a short-term high-fat overfeeding on plasma levels of acylcarnitines in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Ribel-Madsen, R.; Brøns, C.; Newgard, C. B.; Vaag, A.A.; Hellgren, Lars.

    In: Diabetologia, Vol. 58, No. Suppl. 1, 249, 2015, p. s125.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  324. Published

    The effect of maternal Inflammation on foetal programming of metabolic disease. / Ingvorsen, Camilla; Pedersen, Susanne Brix; Ozanne, S. E.; Hellgren, Lars.

    In: Acta Physiologica, Vol. 214, No. 4, 2015, p. 440-449.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  325. Published

    The effect of surface treatment and topography on corrosion behavior of EN 1.4404 stainless steel : The effect of surface treatment and topography. / Lage, R.; Møller, Per; Fallesen, Henrik Ebbe.

    In: Materials and Corrosion, Vol. 66, No. 10, 2015, p. 1060-1067.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  326. Published

    The emergence of Vibrio pathogens in Europe: ecology, evolution, and pathogenesis (Paris, 11-12th March 2015). / LeRoux, Frederique; Wegner, K. Mathias; Baker-Austin, Craig; Vezzulli, Luigi; Osorio, Carlos R.; Amaro, Carmen; Ritchie, Jennifer M.; Defoirdt, Tom; Destoumieux-Garzon, Delphine; Blokesch, Melanie; Mazel, Didier; Jacq, Annick; Cava, Felipe; Gram, Lone; Wendling, Carolin C.; Strauch, Eckhard; Kirschner, Alexander; Huehn, Stephan.

    In: Frontiers in Microbiology, Vol. 6, 830, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  327. Published

    The GH5 1,4-β-mannanase from Bifidobacterium animalis subsp. lactis Bl-04 possesses a low-affinity mannan-binding module and highlights the diversity of mannanolytic enzymes. / Morrill, Johan; Kulcinskaja, Evelina; Sulewska, Anna Maria; Lahtinen, Sampo; Stålbrand, Henrik; Svensson, Birte; Abou Hachem, Maher .

    In: Biochemistry, Vol. 16, No. 26, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  328. Published

    The fur Gene as a New Phylogenetic Marker for Vibrionaceae Species Identification. / Machado, Henrique; Gram, Lone.

    In: Applied and Environmental Microbiology, Vol. 81, No. 8, 2015, p. 2745-2752.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  329. Published

    The importance of mass spectrometric dereplication in fungal secondary metabolite analysis. / Nielsen, Kristian Fog; Larsen, Thomas Ostenfeld.

    In: Frontiers in Microbiology, Vol. 6, 71, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  330. Published

    The ocean sampling day consortium. / Kopf, Anna; Bicak, Mesude; Kottmann, Renzo; Schnetzer, Julia; Kostadinov, Ivaylo; Lehmann, Katja; Fernandez-Guerra , Antonio; Jeanthon, Christian; Rahav, Eyal; Ullrich, Matthias; Sonnenschein, Eva; Jackson, Stephen.

    In: GigaScience, Vol. 4, No. 27, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  331. Published

    The potential of pathological protein fragmentation in blood-based biomarker development for dementia - with emphasis on Alzheimer's disease. / Inekci, Dilek; Svendsen Jonesco, Ditte; Kennard, Sophie; Karsdal, Morten Asser; Henriksen, Kim.

    In: Frontiers in Neurology, Vol. 6, 2015.

    Publication: Research - peer-reviewReview – Annual report year: 2015

  332. Published

    The potential role of Alu Y in the development of resistance to SN38 (Irinotecan) or oxaliplatin in colorectal cancer. / Lin, Xue; Stenvang, Jan; Rasmussen, Mads Heilskov; Zhu, Shida; Jensen, Niels Frank; Tarpgaard, Line S.; Yang, Guangxia; Belling, Kirstine C.; Andersen, Claus Lindbjerg; Li, Jian; Bolund, Lars; Brunner, Nils.

    In: B M C Genomics, Vol. 16, No. 404, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  333. Published

    The Small Colony Variant Of Listeria Monocytogenes Is More Tolerant To Antibiotics And Grows Better Within Caco-2 Epithelial Cells Than The Wild Type. / Curtis, Thomas; Gram, Lone; Knudsen, Gitte Maegaard.

    The Danish Microbiological Society Annual Congress 2015: Programme & Abstracts. Copenhagen, 2015. p. 55-55.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  334. Published

    The vaginal microbiome is stable in prepubertal and sexually mature Ellegaard Göttingen Minipigs throughout an estrous cycle. / Lorenzen, Emma; Kudirkiene, Egle; Gutman, Nicole; Grossi, Anette Blak; Agerholm, Jørgen Steen; Erneholm, Karin; Skytte, Christina; Dalgaard, Marlene Danner; Bojesen, Anders Miki.

    In: Veterinary Research, Vol. 46, No. 125, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  335. Published

    The widespread multi-drug-resistant serotype O12 Pseudomonas aeruginosa clone emerged through concomitant horizontal transfer of serotype antigen and antibiotic resistance gene clusters. / Thrane, Sandra Wingaard; Taylor, Véronique L.; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Laroche, Jérôme; Pirnay, Jean-Paul; Lévesque, Roger C.; Lam, Joseph S.; Jelsbak, Lars.

    2015.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  336. Published

    The Widespread Multidrug-Resistant Serotype O12 Pseudomonas aeruginosa Clone Emerged through Concomitant Horizontal Transfer of Serotype Antigen and Antibiotic Resistance Gene Clusters. / Thrane, Sandra Wingaard; Taylor, Véronique L.; Freschi, Luca; Kukavica-Ibrulj, Irena; Boyle, Brian; Laroche, Jérôme; Pirnay, Jean-Paul; Lévesque, Roger C.; Lam, Joseph S.; Jelsbak, Lars.

    In: mBio (Online), Vol. 6, No. 5, e01396-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  337. Published

    Thrombocytosis of Liver Metastasis from Colorectal Cancer as Predictive Factor. / Josa, Valeria; Krzystanek, Marcin; Vass, Tamas; Lang, Tamas; Juhasz, Viktoria; Szilagyi, Kamilla; Tihanyi, Balazs; Harsanyi, Laszlo; Szallasi, Zoltan Imre; Salamon, Ferenc; Baranyai, Zsolt.

    In: Pathology and Oncology Research, Vol. 21, No. 4, 2015, p. 991-997.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  338. Published

    Tools and data services registry : a community effort to document bioinformatics resources. / Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil Karol; Chmura, Piotr Jaroslaw; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim ; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C. E.; de la Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 44, No. D1, gkv1116, 2015, p. D38-D47.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  339. Published

    Towards High-throughput Immunomics for Infectious Diseases: Use of Next-generation Peptide Microarrays for Rapid Discovery and Mapping of Antigenic Determinants. / J. Carmona, Santiago; Nielsen, Morten; Schafer-Nielsen, Claus; Mucci, Juan; Altcheh, Jaime; Balouz, Virginia; Tekiel, Valeria; C. Frasch, Alberto; Campetella, Oscar; A. Buscaglia, Carlos; Agüero, Fernán.

    In: Molecular & Cellular Proteomics, Vol. 14, No. 7, 2015, p. 1871-1884.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  340. Published

    Toxigenic penicillia spoiling frozen chicken nuggets. / Wigmann, Evelin Francine; Saccomori, Fernanda; Bernardi, Angelica Olivier; Frisvad, Jens Christian; Copetti, Marina Venturini.

    In: Food Research International, Vol. 67, 2015, p. 219-222.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  341. Published

    Traces of ATCV-1 associated with laboratory component contamination. / Kjartansdóttir, Kristín Rós ; Friis-Nielsen, Jens; Asplund, Maria ; Mollerup, Sarah ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Raith Richter, Stine ; Alquezar-Planas, David E. ; Olsen, Pernille V. S. ; Vinner, Lasse ; Fridholm, Helena ; Sicheritz-Pontén, Thomas; Nielsen, Lars Peter; Brunak, Søren; Willerslev, Eske; Gonzalez-Izarzugaza, Jose Maria; Hansen, Anders Johannes .

    In: National Academy of Sciences. Proceedings, Vol. 112, No. 9, 2015, p. E925–E926.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  342. Published

    Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments. / Librado, Pablo; Der Sarkissian, Clio; Ermini, Luca; Schubert, Mikkel; Albrechtsen, Anders; Fumagalli, Matteo; Yang, Melinda A.; Gamba, Cristina; Seguin-Orlando, Andaine; Mortensen, Cecilie; Petersen, Bent; Hoover, Cindi A.; Lorente-Galdos, Belen; Nedoluzhko, Artem; Boulygina, Eugenia; Tsygankova, Svetlana; Neuditschko, Markus; Jagannathan, Vidhya; Thèves, Catherine; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A S; Sicheritz-Pontén, Thomas; Popov, Ruslan; Grigoriev, Semyon; N. Alekseev, Anatoly; Rubin, Edward M.; McCue, Molly; Rieder, Stefan; Leeb, Tosso; Tikhonov, Alexei; Crubézy, Eric; Slatkin, Montgomery; Marques-Bonet, Tomas; Nielsen, Rasmus; Willerslev, Eske; Kantanen, Juha; Prokhortchouk, Egor; Orlando, Ludovic.

    In: National Academy of Sciences. Proceedings, Vol. 112, No. 50, 2015, p. E6889-E6897.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  343. Published

    Transcriptome and genome size analysis of the venus flytrap. / Jensen, Michael Krogh; Vogt, Josef Korbinian; Bressendorff, Simon; Seguin-Orlando, Andaine; Petersen, Morten; Sicheritz-Pontén, Thomas; Mundy, John.

    In: P L o S One, Vol. 10, No. 4, e0123887, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  344. Published

    Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism. / Hao, Qin; Yadav, Rachita; Basse, Astrid L.; Petersen, Sidsel ; Sonne, Si B.; Rasmussen, Simon; Zhu, Qianhua; Lu, Zhike; Wang, Jun; Audouze, Karine Marie Laure; Gupta, Ramneek; Madsen, Lise; Kristiansen, Karsten; Hansen, Jacob B.

    In: American Journal of Physiology: Endocrinology and Metabolism, Vol. 308, No. 5, 2015, p. E380-E392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  345. Published

    TumorTracer: a method to identify the tissue of origin from the somatic mutations of a tumor specimen. / Marquard, Andrea Marion; Birkbak, Nicolai Juul; Thomas, Cecilia Engel; Favero, Francesco; Krzystanek, Marcin; Lefebvre, Celine; Ferté, Charles; Jamal-Hanjani, Mariam; Wilson, Gareth A.; Shafi, Seema; Swanton, Charles; André, Fabrice; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: B M C Medical Genomics, Vol. 8, No. 58, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  346. Published

    Two Lactococcus lactis thioredoxin paralogues play different roles in responses to arsenate and oxidative stress. / Efler, Petr; Kilstrup, Mogens; Johnsen, Stig; Svensson, Birte; Hägglund, Per.

    In: Microbiology, Vol. 161, No. Pt 3, 2015, p. 528-538.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  347. Published

    Udbrud af klinisk salmonellose hos æglæggende høns. / Olesen, Lis; Sørensen, Gitte; Lauritsen, Klara Tølbøl; Boel, Jeppe; Holm, Elisabeth; Pedersen, Karl.

    In: Dansk Erhvervsfjerkrae, Vol. 44, No. 8, 2015, p. 52-54.

    Publication: CommunicationJournal article – Annual report year: 2015

  348. Published
  349. Published

    Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792. / Valles, Iliana Espinoza; Vora, Gary J; Lin, Baochuan; Leekitcharoenphon, Pimlapas; González-Castillo, Adrián; Ussery, David; Høj, Lone; Gomez-Gil, Bruno.

    In: Microbiology, Vol. 161, No. 9, 2015, p. 1762-1779.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  350. Published

    Unlocking the potential of fungi: QuantFung project. / Randelovic, Milica; Grijseels, Sietske; Workman, Mhairi.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. B-15.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  351. Published

    Unlocking the potential of fungi: the QuantFung project. / Büttel, Zsófia ; Díaz, Rafael ; Dirnberger, Benedict ; Flak, Michal ; Grijseels, Sietske; Kwon, Min Jin ; Froslev Nielsen, Jens Christian ; Nygård, Yvonne ; Phule, Pradeep ; Pohl, Carsten ; Prigent, Sylvain ; Randelovic, Milica; Schütze, Tabea ; Troppens, Danielle ; Viggiano, Annarita .

    In: Fungal Biology and Biotechnology, Vol. 2, 6, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  352. Published

    Unmasking Determinants of Specificity in the Human Kinome. / Creixell, Pau; Palmeri, Antonio; Miller, Chad J.; Lou, Hua Jane; Santina, Cristina Costa; Nielsen, Morten; Turk, Benjamin E.; Linding, Rune.

    In: Cell, Vol. 163, No. 1, 2015, p. 187-201.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  353. Published

    Urea and thiourea modified polypropyleneimine dendrimers clear intracellular α-synuclein aggregates in a human cell line. / Laumann, Kristoffer; Boas, Ulrik; Larsen, Hjalte Martin; Heegaard, Peter M. H.; Bergström, Ann-Louise.

    In: Biomacromolecules, Vol. 16, No. 1, 2015, p. 116-124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  354. E-pub ahead of print

    Using registries to integrate bioinformatics tools and services into workbench environments. / Ménager, Hervé; Kalaš, Matúš; Rapacki, Kristoffer; Ison, Jon.

    In: International Journal on Software Tools for Technology Transfer, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  355. Published
  356. E-pub ahead of print
  357. Published

    Virulence grading of vibrio spp. strains by experimental challenge of atlantic halibut (hippiglossus hippoglossus l.), atlantic cod (gadus morhua l.) and turbot (scophthalmus maximus l.) yolk sack larv ae. / Rønneseth, A.; D'Alvise, Paul; Tønnesen, Ø.; Haugland, G. T.; Grotkjær, Torben; Engel-Sørensen, K.; Nørremark, L.; Gram, Lone; Bergh, Øivind; Wergeland, Heidrun I.

    17th International Conference on Diseases of Fish And Shellfish: Abstract book. Las Palmas : European Association of Fish Pathologists, 2015. p. 372-372 P-148.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  358. Published

    Volumetric Ultrasound Imaging with Row-Column Addressed 2-D Arrays Using Spatial Matched Filter Beamforming. / Bouzari, Hamed; Engholm, Mathias; Christiansen, Thomas Lehrmann; Stuart, Matthias Bo; Nikolov, Svetoslav Ivanov; Thomsen, Erik Vilain; Thomsen, Erik Vilain; Jensen, Jørgen Arendt.

    Proceedings of 2015 IEEE International Ultrasonics Symposium. IEEE, 2015.

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

  359. Published

    What Can We Learn from a Metagenomic Analysis of a Georgian Bacteriophage Cocktail?. / Zschach, Henrike; Joensen, Katrine Grimstrup; Lindhard, Barbara; Lund, Ole; Goderdzishvili, Marina; Chkonia, Irina; Jgenti, Guliko; Kvatadze, Nino; Alavidze, Zemphira; Kutter, Elizabeth M; Hasman, Henrik; Larsen, Mette Voldby.

    In: Viruses, Vol. 7, No. 12, 2015, p. 6570-6589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  360. Published

    Whey-reduced weight gain is associated with a temporary growth reduction in young mice fed a high-fat diet. / Tranberg, Britt; Madsen, Andreas N.; Hansen, Axel K.; Hellgren, Lars.

    In: Journal of Nutritional Biochemistry, Vol. 26, No. 1, 2015, p. 9–15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  361. Published

    Why Big Data is relevant in Health care. / Gupta, Ramneek; Pedersen, Helle Krogh; Yadav, Rachita.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. Q-8.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  362. Published

    Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients. / Marvig, Rasmus Lykke; Dolce, Daniela; Madsen Sommer, Lea Mette; Petersen, Bent; Ciofu, Oana; Campana, Silvia; Molin, Søren; Taccetti, Giovanni; Johansen, Helle Krogh.

    In: B M C Microbiology, Vol. 15, No. 218, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  363. Published

    Working in the biomedical engineering domain: opportunities and challenges. / Jelsbak, Lars.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. Q-1.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  364. Published

    Yeast cell factories on the horizon. / Nielsen, Jens.

    In: Science, Vol. 349, No. 6252, 2015, p. 1050-1051.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  365. 2014
  366. Published
  367. Published
  368. Published
  369. Published
  370. Published

    Acute and perinatal-programming effects of a fat-rich diet on rat muscle mitochondrial function and hepatic lipid accumulation.. / Hellgren, Lars; Jensen, Runa I.; Waterstradt, Michelle S. G. ; Quistorff, Bjørn; Lauritzen, Lotte.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 93, 2014, p. 1170-1180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  371. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, Camilla P.; Berentzen, Tina L.; Østergaard, Jane N.; Dahm, Christina C.; Hellgren, Lars; Schmidt, Erik B.; Tjønneland, Anne; Sørensen, Thorkild I. A.; Overvad, Kim; Jakobsen, Marianne U.

    In: The British Journal of Nutrition, Vol. 111, No. 7, 2014, p. 1283-1291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  372. Published

    A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.. / Lindemose, Søren; Jensen, Michael Krogh; de Velde, Jan Van; O'Shea, Charlotte; Heyndrickx, Ken S.; Workman, Christopher; Vandepoele, Klaas; Skriver, Karen; De Masi, Federico.

    In: Nucleic Acids Research, Vol. 42, No. 12, 2014, p. 7681-7693.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  373. Published

    Adsorption and nanowear properties of bovine submaxillary mucin films on solid surfaces: Influence of solution pH and substrate hydrophobicity. / Sotres, Javier; Madsen, Jan Busk; Arnebrant, Thomas; Lee, Seunghwan.

    In: Journal of Colloid and Interface Science, Vol. 428, 2014, p. 242-250.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  374. Published

    Ageing of atrazine in manure amended soils assessed by bioavailability to Pseudomonas sp. strain ADP. / Glæsner, Nadia; Bælum, Jacob; Strobel, Bjarne W.; Jacobsen, Carsten S.

    In: Biodegradation, Vol. 25, No. 2, 2014, p. 217-225.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  375. Published

    A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy. / Bruhn, Sören; Fang, Yu; Barrenäs, Fredrik; Gustafsson, Mika; Zhang, Huan; Konstantinell, Aelita; Krönke, Andrea; Sönnichsen, Birte; Bresnick, Anne; Dulyaninova, Natalya; Wang, Hui; Zhao, Yelin; Klingelhöfer, Jörg; Ambartsumian, Noona; Beck, Mette Kristina; Nestor, Colm; Bona, Elsa; Xiang, Zou; Benson, Mikael.

    In: Science Translational Medicine, Vol. 6, No. 218, 2014, p. 20218ra4-218ra4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  376. Published

    A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.. / Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; den Dekker, Herman T; Husby, Anders; Sevelsted, Astrid; Faura-Tellez, Grissel; Mortensen, Li Juel; Paternoster, Lavinia; Flaaten, Richard; Mølgaard, Anne; Smart, David E; Thomsen, Philip Francis; Rasmussen, Morten; Bonàs-Guarch, Silvia; Holst, Claus; Nohr, Ellen A; Yadav, Rachita; March, Michael E; Blicher, Thomas Holberg; Lackie, Peter M; Jaddoe, Vincent W V; Simpson, Angela; Holloway, John W; Duijts, Liesbeth; Custovic, Adnan; Davies, Donna E; Torrents, David; Gupta, Ramneek; Hollegaard, Mads Vilhelm; Hougaard, David M; Hakonarson, Hakon; Bisgaard, Hans Flinker.

    In: Nature Genetics, Vol. 46, 2014, p. 51-55.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  377. Published
  378. Published

    A kinetic model of thiamine biosynthesis in Escherichia coli. / Matos, Marta; Herrgard, Markus; Andersen, Mikael Rørdam; Sonnenschein, Nikolaus.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  379. Published

    Analysis of pan-genome content and its application in microbial identification. / Lukjancenko, Oksana; Ussery, David (Main supervisor); Larsen, Mette Voldby (Supervisor).

    Technical University of Denmark, 2014. 177 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  380. Published

    Analysis of surface binding sites (SBSs) in carbohydrate active enzymes with focus on glycoside hydrolase families 13 and 77 : — a mini-review. / Cockburn, Darrell; Wilkens, Casper; Ruzanski, Christian; Andersen, Susan; Willum Nielsen, Jonas; Smith, Alison M.; Field, Robert A.; Willemoes, Martin; Abou Hachem, Maher ; Svensson, Birte.

    In: Biologia, Vol. 69, No. 6, 2014, p. 705-712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  381. Published
  382. Published

    An elevated pro-inflammatory cytokine profile in multiple chemical sensitivity. / Dantoft, Thomas Meinertz; Elberling, J.; Pedersen, Susanne Brix; Szecsi, P.B.; Vesterhauge, S.; Skovbjerg, S.

    In: Psychoneuroendocrinology, Vol. 40, 2014, p. 140-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  383. Published

    An integrated catalog of reference genes in the human gut microbiome. / Li, Junhua; Jia, Huijue; Cai, Xianghang; Zhong, Huanzi; Feng, Qiang; Sunagawa, Shinichi; Arumugam, Manimozhiyan; Kultima, Jens Roat; Prifti, Edi; Nielsen, Trine; Juncker, Agnieszka; Nielsen, Henrik Bjørn; Brunak, Søren.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 834-841.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  384. Published
  385. Published

    An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. / Brownstein, Catherine A ; Beggs, Alan H ; Homer, Nils ; Merriman, Barry ; Yu, Timothy W; Flannery, Katherine C ; DeChene, Elizabeth T ; Towne, Meghan C ; Savage, Sarah K ; Price, Emily N ; Dworzynski, Piotr.

    In: Genome Biology (Online Edition), Vol. 15, R53, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  386. Published

    Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. / Lundby, Alicia; Rossin, Elizabeth J.; Steffensen, Annette B.; Acha, Moshe Ray; Newton-Cheh, Christopher; Pfeufer, Arne; Lyneh, Stacey N.; Olesen, Søren-Peter; Brunak, Søren; Ellinor, Patrick T.; Jukema, J. Wouter; Trompet, Stella; Ford, Ian; Macfarlane, Peter W.; Krijthe, Bouwe P.; Hofman, Albert; Uitterlinden, Andre G.; Stricker, Bruno H.; Nathoe, Hendrik M.; Spiering, Wilko; Daly, Mark J.; Asselbergs, Folkert W.; van der Harst, Pim; Milan, David J.; de Bakker, Paul I. W.; Lage, Kasper; Olsen, Jesper V.

    In: Nature Methods, Vol. 11, No. 8, 2014, p. 868-874.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  387. Published
  388. Published

    A novel platform for heterologous gene expression in Trichoderma reesei (Teleomorph Hypocrea jecorina). / Jørgensen, Mikael Skaanning; Skovlund, Dominique Aubert; Johannesen, Pia Francke; Mortensen, Uffe Hasbro.

    In: Microbial Cell Factories, Vol. 13, No. 1, 2014, p. 33.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  389. Published

    Antibiofilm Properties of Acetic Acid. / Bjarnsholt, Thomas; Alhede, Morten; Jensen, Peter Østrup; Nielsen, Anne K.; Johansen, Helle Krogh; Homøe, Preben; Høiby, Niels; Givskov, Michael Christian; Kirketerp-Møller, Klaus.

    In: Advances in Wound Care, Vol. 4, No. 7, 2014, p. 363-372.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  390. Published

    Antibiotic Resistance : Adaptive Evolution & Dissemination of Resistance Genes. / Munck, Christian; Sommer, Morten (Main supervisor).

    Department of Systems Biology, DTU, 2014. 129 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  391. Published

    Antibody informatics for drug discovery. / Shirai, Hiroki; Prades, Catherine; Vita, Randi; Marcatili, Paolo; Popovic, Bojana; Xu, Jianqing; Overington, John P.; Hirayama, Kazunori; Soga, Shinji; Tsunoyama, Kazuhisa; Clark, Dominic; Lefranc, Marie-Paule; Ikeda, Kazuyoshi.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 11, 2014, p. 2002-2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  392. Published

    Antibody structural modeling with prediction of immunoglobulin structure (PIGS).. / Marcatili, Paolo; Olimpieri, Pier Paolo; Chailyan, Anna; Tramontano, Anna.

    In: Nature Protocols, Vol. 9, No. 12, 2014, p. 2771-2783.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  393. Published

    A pan-cancer analysis of inferred homologous recombination deficiency identifies potential platinum benefit in novel subtypes. / Marquard, Andrea Marion; Eklund, Aron Charles; Wang, Zhigang C.; Richardson, Andrea L.; Szallasi, Zoltan Imre; Birkbak, Nicolai Juul.

    In: Cancer Research, Vol. 74, No. 19 - Supplement, 2822, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  394. Published
  395. Published
  396. Published

    A random set scoring model for prioritization of disease candidate genes using protein complexes and data-mining of GeneRIF, OMIM and PubMed records.. / Jiang, Li; Edwards, Stefan M.; Thomsen, Bo; Workman, Christopher; Guldbrandtsen, Bernt; Sørensen, Peter.

    In: BMC Bioinformatics, Vol. 15, No. 315, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  397. Published

    A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. / Clemente, Florian J. ; Cardona, Alexia; Inchley, Charlotte E. ; Peter, Benjamin M. ; Jacobs, Guy; Pagani, Luca ; Lawson, Daniel J. ; Antão, Tiago ; Vicente, Mário ; Mitt, Mario ; Rasmussen, Simon.

    In: American Journal of Human Genetics, Vol. 95, No. 5, 2014, p. 584–589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  398. Published

    Aspergillus pragensis sp nov discovered during molecular reidentification of clinical isolates belonging to Aspergillus section Candidi. / Lyskova, Pavlina; Hubka, Vit; Kolarik, Miroslav; Skorepova, Magdalena; Peterson, Stephen W.; Frisvad, Jens Christian.

    In: Medical Mycology, Vol. 52, No. 6, 2014, p. 565-576.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  399. Published

    Assessment of aflatoxigenicAspergillusand other fungi in millet and sesame from Plateau State, Nigeria. / Ezekiel, C.N.; Udom, I.E.; Frisvad, Jens Christian; Adetunji, M.C.; Houbraken, J.; Fapohunda, S.O.; Samson, R.A.; Atanda, O.O.; Agi-Otto, M.C.; Onashile, O.A.

    In: Mycology, Vol. 5, No. 1, 2014, p. 16-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  400. Published

    A sustainable route to produce the scytonemin precursor using Escherichia coli. / Malla, Sailesh; Sommer, Morten O. A.

    In: Green Chemistry, Vol. 16, No. 6, 2014, p. 3255-3265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  401. Published

    A taxonomic and phylogenetic revision of Penicillium section Aspergilloides. / Houbraken, J.; Visagie, C.M.; Meijer, M.; Frisvad, Jens Christian; Busby, P.E.; Pitt, J.I.; Seifert, K.A.; Louis-Seize, G.; Demirel, R.; Yilmaz, N.; Jacobs, K.; Christensen, M.; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 373-451.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  402. Published
  403. Published

    A β1-6/β1-3 galactosidase from B ifidobacterium animalis subsp. lactis Bl-04 gives insight into sub-specificities of β-galactoside catabolism within B ifidobacterium. / Viborg, Alexander Holm; Fredslund, Folmer; Katayama, Takane; Nielsen, Stinne Kirketerp; Svensson, Birte; Kitaoka, Motomitsu; Leggio, Leila Lo; Abou Hachem, Maher .

    In: Molecular Microbiology, Vol. 94, No. 5, 2014, p. 1024–1040.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  404. Published

    Bacterial diversity in snow on North Pole ice floes. / Hauptmann, Aviaja Zenia Edna Lyberth; Stibal, Marek ; Bælum, Jacob; Sicheritz-Pontén, Thomas; Brunak, Søren; Bowman, Jeff S.; Hansen, Lars H. ; Jacobsen, Carsten S.; Blom, Nikolaj.

    In: Extremophiles, Vol. 18, 2014, p. 945-951.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  405. Published
  406. Published
  407. Published
  408. Published
  409. Published

    Biological insights from 108 schizophrenia-associated genetic loci. / Ripke, Stephan; Neale, Benjamin M.; Corvin, Aiden ; Walters, James T. R. ; Farh, Kai-How ; Holmans, Peter A. ; Lee, Phil ; Bulik-Sullivan, Brendan ; Collier, David A. ; Huang, Hailiang ; Pers, Tune Hannes; Agerbo, Esben ; Demontis, Ditte ; Hansen, Thomas; Hollegaard, Mads Vilhelm; Hougaard, David M.; Mors, Ole; Werge, Thomas.

    In: Nature, Vol. 511, 2014, p. 421-427.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  410. Published

    Biosynthetic potential for polyketides in Talaromyces atroroseus. / Rasmussen, Kasper Bøwig; Mortensen, Uffe Hasbro; Thrane, Ulf.

    2014. Poster session presented at 12th European Conference on fungal genetics, Seville, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  411. Published

    Brazil nuts are subject to infection with B and G aflatoxin-producing fungus, Aspergillus pseudonomius. / Massi, Fernanda Pelisson; Cameiro Vieira, Maria Lucia; Sartori, Daniele; Silva Penha, Rafael Elias; Munhoz, Carla de Freitas; Ferreira, Josue Maldonado; Iamanaka, Beatriz Thie; Taniwaki, Marta Hiromi; Frisvad, Jens Christian; Pelegrinelli Fungaro, Maria Helena.

    In: INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, Vol. 186, 2014, p. 14-21.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  412. Published

    Cancer panomics: computational methods and infrastructure for integrative analysis of cancer high-throughput "omics" data : session introduction. / Brunak, Søren; De La Vega, Francisco M.; Rätsch, Gunnar; Stuart, Joshua M.

    In: Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, Vol. 19, 2014.

    Publication: Research - peer-reviewConference article – Annual report year: 2015

  413. Published

    Cesarean section imprints cord blood immune cell distributions. / Thysen, Anna Hammerich; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Stokholm, J.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 438, 2014, p. 192-192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  414. Published

    Chaetomium and Stachybotrys in water-damaged buildings. / Andersen, Birgitte; Lewinska, Anna Malgorzata; Nielsen, Jakob Blæsbjerg; Dosen, Ina; Nielsen, Kristian Fog; Peuhkuri, Ruut Hannele; Rode, Carsten; Clausen, Geo; Thrane, Ulf.

    2014. Poster session presented at 10th International Mycological Congress, Bangkok, Thailand.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  415. Published
  416. Published

    Characterisation of Non-Autoinducing Tropodithietic Acid (TDA) Production from Marine Sponge Pseudovibrio Species.. / Harrington, Catriona; Reen, F. Jerry; Mooij, Marlies J.; Stewart, Fiona A.; Chabot, Jean-Baptiste; Guerra, Antonio F.; Glöckner, Frank O.; Nielsen, Kristian Fog; Gram, Lone; Dobson, Alan D. W.; Adams, Claire; O'Gara, Fergal.

    In: Marine Drugs, Vol. 12, 2014, p. 5960-5978.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  417. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  418. Published

    Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery.. / Hansen, Andreas M.; Rasmussen, Michael; Svitek, Nicholas; Harndahl, Mikkel; Golde, William T.; Barlow, John; Nene, Vishvanath; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 12, 2014, p. 705-718.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  419. Published

    Characterizing the human hematopoietic CDome. / Barnkob, Mike Stein; Simon, Christian; Olsen, Lars Rønn.

    In: Frontiers in Genetics, Vol. 5, 331, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  420. Published

    Chemical Characterization, Antioxidant and Enzymatic Activity of Brines from Scandinavian Marinated Herring Products. / Gringer, Nina; Osman, Ali; Nielsen, Henrik Hauch; Undeland, Ingrid; Baron, Caroline P.

    In: Journal of Food Processing & Technology, Vol. 5, No. 346, 1000346, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  421. Published

    Children developing asthma by school-age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, S.; Rasmussen, M.A.; Bisgaard, H.

    In: ALLERGY, Vol. 69, No. s99, 404, 2014, p. 179-179.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  422. Published

    Children with asthma by school age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, Sune; Rasmussen, Morten Arendt; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 133, No. 4, 2014, p. 1008-1013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  423. Published
  424. Published

    Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections. / Feliziani, Sofia; Marvig, Rasmus Lykke; Lujan, Adela M.; Moyano, Alejandro J.; Di Rienzo, Julio A.; Johansen, Helle Krogh; Molin, Søren; Smania, Andrea M.

    In: P L o S Genetics, Vol. 10, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  425. Published

    Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. / Geertz-Hansen, Henrik Marcus; Blom, Nikolaj; Feist, Adam; Brunak, Søren; Petersen, Thomas Nordahl.

    In: Proteins, Vol. 82, No. 9, 2014, p. 1819-1828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  426. Published
  427. Published

    Combining Experiments and Simulations Using the Maximum Entropy Principle. / Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten.

    In: P L o S Computational Biology (Online), Vol. 10, No. 2, e1003406, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  428. Published

    Comparative Genomic and Metabolomic Analysis of Twelve Strains of Pseudoalteromonas luteoviolacea. / Månsson, Maria; Vynne, Nikolaj Grønnegaard; Klitgaard, Andreas; Melchiorsen, Jette; Dorrestein, Pieter C.; Gram, Lone.

    2014. Poster session presented at Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  429. Published

    Comparative genomics of Lactobacillus and other LAB. / Wassenaar, Trudy M.; Lukjancenko, Oksana.

    Lactic Acid Bacteria: Biodiversity and Taxonomy. ed. / Wilhelm H. Holzapfel; Brian J.B. Wood. United Kingdom : Wiley-Blackwell, 2014. p. 55-69.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  430. Published

    Comparison of the Web Tools ARG-ANNOT and ResFinder for Detection of Resistance Genes in Bacteria. / Zankari, Ea.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 8, 2014, p. 4986-4986.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  431. Published

    Compass: A hybrid method for clinical and biobank data mining. / Krysiak-Baltyn, Konrad; Petersen, Thomas Nordahl; Audouze, Karine Marie Laure; Jørgensen, Niels; Ängquist, L.; Brunak, Søren.

    In: Journal of Biomedical Informatics, Vol. 47, 2014, p. 160-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  432. Published

    Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn. / Fahnøe, Ulrik; Höper, Dirk ; Beer, Martin; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 1, e01142-13, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  433. Published

    Complete Genome Sequence of Classical Swine Fever Virus Genotype 2.2 Strain Bergen. / Fahnøe, Ulrik; Lohse, Louise; Becher, Paul ; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 3, 2014, p. e00483-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  434. Published

    Computational and Experimental Approaches to Cancer Biomarker Discovery. / Krzystanek, Marcin; Szallasi, Zoltan Imre (Main supervisor); Eklund, Aron Charles (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2014. 96 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  435. Published

    Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. / Almeida, Mathieu; Hebert, Agnes; Abraham, Anne-Laure; Rasmussen, Simon; Monnet, Christophe; Pons, Nicolas; Delbes, Celine; Loux, Valentin; Batto, Jean-Michel; Leonard, Pierre; Kennedy, Sean; Ehrlich, Stanislas Dusko; Pop, Mihai; Montel, Marie-Christine; Irlinger, Francoise; Renault, Pierre.

    In: B M C Genomics, Vol. 15, No. 1101, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  436. Published

    Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes. / Zelezniak, Aleksej; Sheridan, Steven; Patil, Kiran Raosaheb.

    In: P L o S Computational Biology (Online), Vol. 10, No. 4, e1003572, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  437. Published

    CoreFlow: A computational platform for integration, analysis and modeling of complex biological data. / Pasculescu, Adrian; Schoof, Erwin; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D.; Pawson, Tony; Linding, Rune; Colwill, Karen.

    In: Journal of Proteomics, Vol. 100, 2014, p. 167-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  438. Published
  439. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  440. Published

    Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. / Kim, Yohan; Sidney, John; Buus, Søren; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: B M C Bioinformatics, Vol. 15, No. 1, 241, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  441. Published

    Decoding network dynamics in cancer. / Linding, Rune.

    In: Clinical and Experimental Metastasis, Vol. 32, No. 3, 2014, p. 182-182.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  442. Published

    Defining the role of common variation in the genomic and biological architecture of adult human height. / Wood, Andrew R. ; Esko, Tonu; Yang, Jian; Vedantam, Sailaja; Pers, Tune Hannes; Gustafsson, Stefan; Chun, Audrey Y. ; Estrada, Karol; Luan, Jian'an; Folkersen, Lasse.

    In: Nature Genetics, Vol. 46, No. 11, 2014, p. 1173-1186.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  443. Published
  444. Published

    Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. / Olalde, Inigo; Allentoft, Morten E.; Sanchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W. K.; DeGiorgio, Michael; Prado-Martinez, Javier; Rodriguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramirez, Oscar; Marigorta, Urko M.; Fernandez-Callejo, Marcos; Prada, Maria Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G.; Novembre, John; Sturm, Richard A.; Sabeti, Pardis; Marques-Bonet, Tomas; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles.

    In: NATURE, Vol. 507, No. 7491, 2014, p. 225-228.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  445. Published

    Design and application of transcription factor based metabolite sensors in Escherichia coli. / Siedler, Solvej; Stahlhut, Steen Gustav; Bringer, Stephanie; Bott, Michael; Maury, Jerome; Sommer, Morten Otto Alexander.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  446. Published

    Detection of a caspase-3 cleaved tau fragment in the serum of alzheimer's patients by using immunoprecipitation and lc-ms/ms. / Inekci, Dilek; Hägglund, Per; Linemann, Thomas; Jacobsen, Susanne; Svensson, Birte; Vilholm, Ole; Henriksen, Kim.

    In: Alzheimer's & Dementia, Vol. 10, No. 4, 2014, p. P272-P273.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  447. Published

    Determining and comparing protein function in Bacterial genome sequences. / Vesth, Tammi Camilla; Ussery, David (Main supervisor); Lagesen, Karin (Supervisor).

    Technical University of Denmark, 2014. 101 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  448. Published

    Development of droplets‐based microfluidic systems for single­‐cell high‐throughput screening. / Chen, Jun; Jensen, Thomas Glasdam; Godina, Alexei; Solem, Christian; Dufva, Martin; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  449. Published

    Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution. / Fisher, Rosalie; Horswell, Stuart; Rowan, Andrew; Salm, Maximilian P.; de Bruin, Elza C.; Gulati, Sakshi; McGranahan, Nicholas; Stares, Mark; Gerlinger, Marco; Varela, Ignacio; Crockford, Andrew; Favero, Francesco; Quidville, Virginie; André, Fabrice; Navas, Carolina; Grönroos, Eva; Nicol, David; Hazell, Steve; Hrouda, David; O’Brien, Tim; Matthews, Nik; Phillimore, Ben; Begum, Sharmin; Rabinowitz, Adam; Biggs, Jennifer; Bates, Paul A.; McDonald, Neil Q.; Stamp, Gordon; Spencer-Dene, Bradley; Hsieh, James J.; Xu, Jianing; Pickering, Lisa; Gore, Martin; Larkin, James; Swanton, Charles.

    In: Genome Biology (Online Edition), Vol. 15, No. 8, 433, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  450. Published

    Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires. / Bergseng, Elin; Dørum, Siri; Arntzen, Magnus Ø.; Nielsen, Morten; Nygård, Ståle; Buus, Søren; de Souza, Gustavo A. ; Sollid, Ludvig M.

    In: Immunogenetics, Vol. 67, No. 2, 2014, p. 73-84.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  451. Published

    Discovery and characterization of surface binding sites in polysaccharide converting enzymes. / Wilkens, Casper; Svensson, Birte (Main supervisor); Abou Hachem, Maher (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2014. 279 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  452. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium. / Koivula, Robert W.; Heggie, Alison; Barnett, Anna; Cederberg, Henna; Hansen, Tue Haldor; Koopman, Anitra D.; Ridderstrale, Martin; Rutters, Femke; Vestergaard, Henrik; Gupta, Ramneek; Herrgard, Sanna; Heymans, Martijn W.; Perry, Mandy H.; Rauh, Simone; Siloaho, Maritta; Teare, Harriet J. A.; Thorand, Barbara; Bell, Jimmy; Brunak, Søren; Frost, Gary; Jablonka, Bernd; Mari, Andrea; McDonald, Tim J.; Dekker, Jacqueline M.; Hansen, Torben; Hattersley, Andrew; Laakso, Markku; Pedersen, Oluf; Koivisto, Veikko; Ruetten, Hartmut; Walker, Mark; Pearson, Ewan; Franks, Paul W.

    In: DIABETOLOGIA, Vol. 57, No. 6, 2014, p. 1132-1142.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  453. Published

    Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA. / Eriksson, Robert; Aagaard, Lise; Jensen, Lars Juhl; Borisova, Liza; Hørlück, Dorte; Brunak, Søren; Hansen, Ebba Holme.

    In: Pharmacology Research & Perspectives, Vol. 2, No. 3, e00038, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  454. Published

    Distinct substrate specificities of three glycoside hydrolase family 42 β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697. / Viborg, Alexander Holm; Katayama, Takane; Abou Hachem, Maher ; Andersen, Mathias Christian Franch; Nishimoto, Mamoru; Clausen, Mads Hartvig; Urashima, Tadasu; Svensson, Birte; Kitaoka, Motomitsu.

    In: Glycobiology, Vol. 24, No. 2, 2014, p. 208-216.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  455. Published

    Diversity Generation in Evolving Microbial Populations. / Markussen, Trine; Jelsbak, Lars (Main supervisor); Molin, Søren (Supervisor).

    Technical University of Denmark, 2014. 126 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  456. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. / Sander, Adam F.; Lavstsen, Thomas; Rask, Thomas Salhøj; Lisby, Michael; Salanti, Ali; Fordyce, Sarah L.; Jespersen, Jakob S.; Carter, Richard; Deitsch, Kirk W.; Theander, Thor G.; Pedersen, Anders Gorm; Arnot, David E.

    In: Nucleic Acids Research, Vol. 42, No. 4, 2014, p. 2270-2281.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  457. Published

    Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, No. 4, 2014, p. 237-247.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  458. Published

    Draft Genome Sequence of Hoeflea sp. Strain BAL378, a Potential Producer of Bioactive Compounds. / Bentzon-Tilia, Mikkel; Riemann, Lasse; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 6, 2014, p. e01213-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  459. Published

    Draft Genome Sequence of Photobacterium halotolerans S2753, Producer of Bioactive Secondary Metabolites. / Machado, Henrique; Månsson, Maria; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 3, e00535-14, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  460. Published

    Dynamics of co-existing Escherichia colilineages in situ of the infant gut and multiplex phenotypic targeted recovery of previously uncultivated bacteria from the human gut. / Gumpert, Heidi.

    Kgs. Lyngby : Technical University of Denmark (DTU), 2014. 196 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  461. Published

    Early immune response patterns to pathogenic bacteria are associated to increased risk of lower respiratory infections in children. / Vissing, N. H.; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Thysen, Anna Hammerich; Chawes, B. L.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 84, 2014, p. 37-37.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  462. Published
  463. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  464. Published

    Effects of pregnancy on obesity-induced inflammation in a mouse model of fetal programming. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, D.; Nordby, Pernille; Nielsen, Kristian Fog; Ozanne, S. E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: International Journal of Obesity, Vol. 38, No. 10, 2014, p. 1282-1289.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  465. Published

    Effects on metabolic markers are modified by PPARG2 and COX2 polymorphisms in infants randomized to fish oil.. / Harsløf, Laurine B. S.; Damsgaard, Camilla T.; Hellgren, Lars I.; Andersen, Anders Daniel; Vogel, Ulla; Lauritzen, Lotte.

    In: Genes & Nutrition, Vol. 9, No. 3, 396, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  466. Published

    Elucidating Flux Regulation of the Fermentation Modes of Lactococcus lactis : A Mutlilevel Study. / Chan, Siu Hung Joshua; Solem, Christian (Supervisor); Jensen, Peter Ruhdal (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2014. 167 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  467. Published

    Elucidation of primary metabolic pathways in Aspergillus species: Orphaned research in characterizing orphan genes. / Andersen, Mikael Rørdam.

    In: Briefings in Functional Genomics, Vol. 13, No. 6, 2014, p. 451-455.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  468. Published

    Engineering amino acid supply pathways in Chinese hamster ovary cells. / Ley, Daniel; Lund, Anne Mathilde; Rank, Julie; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2014. Poster session presented at 9th Danish Conference on Biotechnology and Molecular Biology, Denmark.

    Publication: ResearchPoster – Annual report year: 2014

  469. Published

    Enhancing Reproducibility in Cancer Drug Screening: How Do We Move Forward?. / Shi, Leming; Haibe-Kains, Benjamin; Birkbak, Nicolai Juul; Bedard, Philippe L.; Hatzis, Christos; Stern, David F.; Clarke, Robert; Quackenbush, John; Beck, Andrew H.; Aerts, Hugo J. W. L.

    In: Cancer Research, Vol. 74, No. 15, 2014, p. 4016-4023.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  470. Published

    Environmental controls on ozone fluxes in a poplar plantation in Western Europe. / Zona, D.; Gioli, B.; Fares, S.; De Groote, T.; Pilegaard, Kim; Ibrom, Andreas; Ceulemans, R.

    In: Environmental Pollution, Vol. 184, No. Sp. Iss. SI, 2014, p. 201-210.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  471. Published

    Environmental factors influencing neonatal immunity and development of diseases later in life. / Kragh, Marie; Pedersen, Susanne Brix (Main supervisor); Hellgren, Lars (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2014. 103 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  472. Published

    Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa.. / Markussen, Trine; Marvig, Rasmus Lykke; Gómez Lozano, María; Aanæs, Kasper; Burleigh, Alexandra E.; Høiby, Niels; Johansen, Helle Krogh; Molin, Søren; Jelsbak, Lars.

    In: mBio (Online), Vol. 5, No. 5, 2014, p. e01592-e01514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  473. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts. / Boomsma, Wouter; Tian, Pengfei; Frellsen, J.; Ferkinghoff-Borg, Jesper; Hamelryck, T.; Lindorff-Larsen, K.; Vendruscolo, M.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 38, 2014, p. 13852-13857.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  474. Published

    Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, 2014, p. 379.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2014

  475. Published

    Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property. / Chan, Siu Hung Joshua; Solem, Christian; Jensen, Peter Ruhdal; Ji, P.

    In: Bioinformatics, Vol. 30, No. 22, 2014, p. 3232-3239.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  476. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  477. Published

    Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations.. / Sandberg, Troy E.; Pedersen, Margit; LaCroix, Ryan A.; Ebrahim, Ali; Bonde, Mads; Herrgard, Markus; Palsson, Bernhard; Sommer, Morten; Feist, Adam.

    In: Molecular Biology and Evolution, Vol. 31, No. 10, 2014, p. 2647-2662.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  478. Published

    Evolution Reveals A Glutathione-dependent Mechanism Of 3-hydroxypropionic Acid Detoxification. / Kildegaard, Kanchana Rueksomtawin; Hallström, Björn M.; Blicher, Thomas H.; Sonnenschein, Nikolaus; Jensen, Niels Bjerg; Sherstyk, Svetlana; Harrison, Scott James; Maury, Jerome; Herrgard, Markus; Juncker, Agnieszka; Förster, Jochen; Nielsen, Jens; Borodina, Irina.

    2014. Abstract from Metabolic Engineering X, Vancouver, Canada.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  479. Published
  480. Published

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, Vol. 71, No. 2, 2014, p. 905-929.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  481. Published

    Experimental and computational tools for analysis of signaling networks in primary cells. / Schoof, Erwin M; Linding, Rune.

    In: Current Protocols in Immunology, Vol. 104, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  482. Published
  483. Published

    Exploring mechanisms of diet-colon cancer associations through candidate molecular interaction networks. / Westergaard, David; Li, Jun; Jensen, Kasper; Kouskoumvekaki, Irene; Panagiotou, Gianni.

    In: B M C Genomics, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  484. Published
  485. Published

    Expression of regulators of mitotic fidelity are associated with intercellular heterogeneity and chromosomal instability in primary breast cancer.. / Roylance, Rebecca; Endesfelder, David; Jamal-Hanjani, Mariam; Burrell, Rebecca A.; Gorman, Patricia; Sander, Jil; Murphy, Niamh; Birkbak, Nicolai Juul; Hanby, Andrew M.; Speirs, Valerie; Johnston, Stephen R. D.; Kschischo, Maik; Swanton, Charles.

    In: Breast Cancer Research and Treatment, Vol. 148, No. 1, 2014, p. 221-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  486. Published

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour ; Brunak, Søren.

    In: Briefings in Bioinformatics, Vol. 15, No. 6, 2014, p. 942-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  487. Published
  488. Published

    Front line defenders of the ecological niche! Screening the structural diversity of peptaibiotics from saprotrophic and fungicolous Trichoderma/Hypocrea species. / Röhrich, Christian René; Jaklitsch, Walter Michael; Voglmayr, Hermann; Iversen, Anita; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; von Döhren, Hans; Brückner, Hans; Degenkolb, Thomas.

    In: Fungal Diversity, Vol. 69, No. 1, 2014, p. 117-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  489. Published

    Fusarium. / Thrane, Ulf.

    Encyclopedia of Food microbiology. Vol. 2 2nd. ed. Elsevier, 2014. p. 76-81.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  490. Published

    Fusarium graminearum PKS14 is involved in orsellinic acid and orcinol synthesis. / Jørgensen, Simon Hartung ; Frandsen, Rasmus John Normand; Nielsen, Kristian Fog; Lysøe, Erik; Sondergaard, Teis Esben; Wimmer, Reinhard; Giese, Henriette; Sørensen, Jens Laurids.

    In: Fungal Genetics and Biology, Vol. 70, 2014, p. 24-31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  491. Published

    Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. / Arking, Dan E; Pulit, Sara L; Crotti, Lia; van der Harst, Pim; Munroe, Patricia B; Koopmann, Tamara T; Sotoodehnia, Nona; Rossin, Elizabeth J; Morley, Michael; Wang, Xinchen; Johnson, Andrew D; Lundby, Alicia; Gudbjartsson, Daniel F.; Noseworthy, Peter A; Eijgelsheim, Mark; Bradford, Yuki; Tarasov, Kirill V; Dörr, Marcus; Müller-Nurasyid, Martina; Lahtinen, Annukka M; Nolte, Ilja M; Smith, Albert Vernon; Bis, Joshua C; Isaacs, Aaron; Newhouse, Stephen J; Evans, Daniel S; Post, Wendy S; Waggott, Daryl; Lyytikäinen, Leo-Pekka; Hicks, Andrew A; Eisele, Lewin; Ellinghaus, David; Hayward, Caroline; Navarro, Pau; Ulivi, Sheila; Tanaka, Toshiko; Tester, David J; Chatel, Stephanie; Gustafsson, Stefan; Kumari, Meena; Morris, Richard W; Naluai, Asa T; Padmanabhan, Sandosh; Kluttig, Alexander; Strohmer, Bernhard; Panayiotou, Andrie G; Torres, Maria; Knoflach, Michael; Hubacek, Jaroslav A; Slowikowski, Kamil; Raychaudhuri, Soumya; Kumar, Runjun D; Harris, Tamara B; Launer, Lenore J; Shuldiner, Alan R; Alonso, Alvaro; Bader, Joel S; Ehret, Georg; Huang, Hailiang; Kao, W H Linda; Strait, James B; Macfarlane, Peter W; Brown, Morris; Caulfield, Mark J; Samani, Nilesh J; Kronenberg, Florian; Willeit, Johann; Smith, J Gustav; Greiser, Karin H; Meyer Zu Schwabedissen, Henriette; Werdan, Karl; Carella, Massimo; Zelante, Leopoldo; Heckbert, Susan R; Psaty, Bruce M; Rotter, Jerome I; Kolcic, Ivana; Polasek, Ozren; Wright, Alan F; Griffin, Maura; Daly, Mark J; Arnar, David O; H��lm, Hilma; Thorsteinsdottir, Unnur; Denny, Joshua C; Roden, Dan M; Zuvich, Rebecca L; Emilsson, Valur; Plump, Andrew S; Larson, Martin G; O'Donnell, Christopher J; Yin, Xiaoyan; Bobbo, Marco; D'Adamo, Adamo P; Iorio, Annamaria; Sinagra, Gianfranco; Carracedo, Angel; Cummings, Steven R; Nalls, Michael A; Jula, Antti; Kontula, Kimmo K; Marjamaa, Annukka; Oikarinen, Lasse; Perola, Markus; Porthan, Kimmo; Erbel, Raimund; Hoffmann, Per; Jöckel, Karl-Heinz; Kälsch, Hagen; Nöthen, Markus M; den Hoed, Marcel; Loos, Ruth J F; Thelle, Dag S; Gieger, Christian; Meitinger, Thomas; Perz, Siegfried; Peters, Annette; Prucha, Hanna; Sinner, Moritz F; Waldenberger, Melanie; de Boer, Rudolf A; Franke, Lude; van der Vleuten, Pieter A; Beckmann, Britt Maria; Martens, Eimo; Bardai, Abdennasser; Hofman, Nynke; Wilde, Arthur A M; Behr, Elijah R; Dalageorgou, Chrysoula; Giudicessi, John R; Medeiros-Domingo, Argelia; Barc, Julien; Kyndt, Florence; Probst, Vincent; Ghidoni, Alice; Insolia, Roberto; Hamilton, Robert M; Scherer, Stephen W; Brandimarto, Jeffrey; Margulies, Kenneth; Moravec, Christine E; Fabiola, no-firstname; Fuchsberger, Christian; O'Connell, Jeffrey R; Lee, Wai K; Watt, Graham C M; Campbell, Harry; Wild, Sarah H; El Mokhtari, Nour E; Frey, Norbert; Asselbergs, Folkert W; Leach, Irene Mateo; Navis, Gerjan; van den Berg, Maarten P; van Veldhuisen, Dirk J; Kellis, Manolis; Krijthe, Bouwe P; Franco, Oscar H; Hofman, Albert; Kors, Jan A; Uitterlinden, Andre G.; Witteman, Jacqueline C M; Kedenko, Lyudmyla; Lamina, Claudia; Oostra, Ben A; Abecasis, Goncalo R; Lakatta, Edward G; Mulas, Antonella; Orrú, Marco; Schlessinger, David; Uda, Manuela; Markus, Marcello R P; Völker, Uwe; Snieder, Harold; Spector, Timothy D; Arnlöv, Johan; Lind, Lars; Sundström, Johan; Syvänen, Ann-Christine; Kivimaki, Mika; Kähönen, Mika; Mononen, Nina; Raitakari, Olli T; Viikari, Jorma S; Adamkova, Vera; Kiechl, Stefan; Brion, Maria; Nicolaides, Andrew N; Paulweber, Bernhard; Haerting, Johannes; Dominiczak, Anna F; Nyberg, Fredrik; Whincup, Peter H; Hingorani, Aroon D; Schott, Jean-Jacques; Bezzina, Connie R; Ingelsson, Erik; Ferrucci, Luigi; Gasparini, Paolo; Wilson, James F; Rudan, Igor; Franke, Andre; Mühleisen, Thomas W; Pramstaller, Peter P; Lehtimäki, Terho J; Paterson, Andrew D; Parsa, Afshin; Liu, Yongmei; van Duijn, Cornelia M; Siscovick, David S; Gudnason, Vilmundur; Jamshidi, Yalda; Salomaa, Veikko; Felix, Stephan B; Sanna, Serena; Ritchie, Marylyn D; Stricker, Bruno H; Stefansson, Kari; Boyer, Laurie A; Cappola, Thomas P; Olsen, Jesper V; Hansen, Kasper Lage; Schwartz, Peter J; Kääb, Stefan; Chakravarti, Aravinda; Ackerman, Michael J; Pfeufer, Arne; de Bakker, Paul I W; Newton-Cheh, Christopher; no-lastname, no-firstname.

    In: Nature Genetics, Vol. 46, No. 8, 2014, p. 826-836.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  492. Published

    Genetic Basis for Saccharomyces cerevisiae Biofilm in Liquid Medium. / Andersen, Kaj Scherz; Bojsen, Rasmus Kenneth; Gro Rejkjær Sørensen, Laura; Weiss Nielsen , Martin ; Lisby, Michael; Folkesson, Sven Anders; Regenberg, Birgitte.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 4, 2014, p. 1671-1680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  493. Published

    Genetic transformation of Fusarium avenaceum by Agrobacterium tumefaciens mediated transformation and the development of a USER-Brick vector construction system. / Sorensen, Lisette Quaade; Lysøe, Erik; Larsen, Jesper Erup; Khorsand-Jamal, Paiman; Nielsen, Kristian Fog; Frandsen, Rasmus John Normand.

    In: B M C Molecular Biology, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  494. Published

    Genome and physiology of the ascomycete filamentous fungus Xeromyces bisporus, the most xerophilic organism isolated to date. / Leong, Su-lin L.; Lantz, Henrik; Pettersson, Olga V.; Frisvad, Jens Christian; Thrane, Ulf; Heipieper, Hermann J.; Dijksterhuis, Jan; Grabherr, Manfred; Pettersson, Mats; Tellgren-Roth, Christian; Schnürer, Johan.

    In: Environmental Microbiology, Vol. 17, No. 2, 2014, p. 496-513.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  495. Published

    Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans. / Moreno-Mayar, J. Víctor; Rasmussen, Simon; Seguin-Orlando, Andaine; Rasmussen, Morten; Liang, Mason; Flåm, Siri Tennebø; Lie, Benedicte Alexandra; Gilfillan, Gregor Duncan; Nielsen, Rasmus; Thorsby, Erik; Willerslev, Eske; Malaspinas, Anna-Sapfo.

    In: Current Biology, Vol. 24, No. 21, 2014, p. 2518-2525.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  496. Published

    Genome-wide association analyses identify variants in developmental genes associated with hypospadias. / Geller, Frank; Feenstra, Bjarke; Carstensen, Lisbeth; Pers, Tune H.; van Rooij, Iris A. L. M.; Korberg, Izabella Baranowska; Choudhry, Shweta; Karjalainen, Juha M.; Schnack, Tine H.; Hollegaard, Mads V.; Feitz, Wout F. J.; Roeleveld, Nel; Hougaard, David M.; Hirschhorn, Joel N.; Franke, Lude; Baskin, Laurence S.; Nordenskjold, Agneta; van der Zanden, Loes F. M.; Melbye, Mads.

    In: Nature Genetics, Vol. 46, No. 9, 2014, p. 957-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  497. Published
  498. Published
  499. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL/6 mice fed and high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2014. Abstract from The Danish Microbiological Society Annual Congress 2014, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  500. Published
  501. Published
  502. Published

    Guanidino groups greatly enhance the action of antimicrobial peptidomimetics against bacterial cytoplasmic membranes.. / Andreev, Konstantin; Bianchi, Christopher; Laursen, Jonas Striegler; Citterio, Linda; Hein-Kristensen, Line; Gram, Lone; Kuzmenko, Ivan; Olsen, Christian Adam; Gidalevitz, David.

    In: Biochimica et Biophysica Acta. Biomembranes, Vol. 1838, No. 10, 2014, p. 2492-2502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  503. Published

    Hearing loss in relation to sound exposure of professional symphony orchestra musicians. / Schmidt, J. H. ; Pedersen, E. R.; Paarup, H. M.; Christensen-Dalsgaard, Jakob; Andersen, T; Poulsen, T.; Bælum, Jacob.

    In: Ear and Hearing, Vol. 35, No. 4, 2014, p. 448-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

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