Department of Systems Biology

  1. 2015
  2. Published
  3. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  4. Published

    Spatio-temporal appearance of α-amylase and limit dextrinase in barley aleurone layer in response to gibberellic acid, abscisic acid and salicylic acid.. / Shahpiri, Azar; Talaei, Nasim; Finnie, Christine.

    In: Journal of the Science of Food and Agriculture, Vol. 95, No. 1, 2015, p. 141-147.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  5. 2014
  6. Published
  7. Published
  8. Published
  9. Published

    Acute and perinatal-programming effects of a fat-rich diet on rat muscle mitochondrial function and hepatic lipid accumulation.. / Hellgren, Lars; Jensen, Runa I.; Waterstradt, Michelle S. G. ; Quistorff, Bjørn; Lauritzen, Lotte.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 93, 2014, p. 1170-1180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  10. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, Camilla P.; Berentzen, Tina L.; Østergaard, Jane N.; Dahm, Christina C.; Hellgren, Lars; Schmidt, Erik B.; Tjønneland, Anne; Sørensen, Thorkild I. A.; Overvad, Kim; Jakobsen, Marianne U.

    In: The British Journal of Nutrition, Vol. 111, No. 7, 2014, p. 1283-1291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  11. Published

    A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.. / Lindemose, Søren; Jensen, Michael Krogh; de Velde, Jan Van; O'Shea, Charlotte; Heyndrickx, Ken S.; Workman, Christopher; Vandepoele, Klaas; Skriver, Karen; De Masi, Federico.

    In: Nucleic Acids Research, Vol. 42, No. 12, 2014, p. 7681-7693.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  12. Published

    Adsorption and nanowear properties of bovine submaxillary mucin films on solid surfaces: Influence of solution pH and substrate hydrophobicity. / Sotres, Javier; Madsen, Jan Busk; Arnebrant, Thomas; Lee, Seunghwan.

    In: Journal of Colloid and Interface Science, Vol. 428, 2014, p. 242-250.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  13. Published

    Ageing of atrazine in manure amended soils assessed by bioavailability to Pseudomonas sp. strain ADP. / Glæsner, Nadia; Bælum, Jacob; Strobel, Bjarne W.; Jacobsen, Carsten S.

    In: Biodegradation, Vol. 25, No. 2, 2014, p. 217-225.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy. / Bruhn, Sören; Fang, Yu; Barrenäs, Fredrik; Gustafsson, Mika; Zhang, Huan; Konstantinell, Aelita; Krönke, Andrea; Sönnichsen, Birte; Bresnick, Anne; Dulyaninova, Natalya; Wang, Hui; Zhao, Yelin; Klingelhöfer, Jörg; Ambartsumian, Noona; Beck, Mette Kristina; Nestor, Colm; Bona, Elsa; Xiang, Zou; Benson, Mikael.

    In: Science Translational Medicine, Vol. 6, No. 218, 2014, p. 20218ra4-218ra4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published

    A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.. / Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; den Dekker, Herman T; Husby, Anders; Sevelsted, Astrid; Faura-Tellez, Grissel; Mortensen, Li Juel; Paternoster, Lavinia; Flaaten, Richard; Mølgaard, Anne; Smart, David E; Thomsen, Philip Francis; Rasmussen, Morten; Bonàs-Guarch, Silvia; Holst, Claus; Nohr, Ellen A; Yadav, Rachita; March, Michael E; Blicher, Thomas Holberg; Lackie, Peter M; Jaddoe, Vincent W V; Simpson, Angela; Holloway, John W; Duijts, Liesbeth; Custovic, Adnan; Davies, Donna E; Torrents, David; Gupta, Ramneek; Hollegaard, Mads Vilhelm; Hougaard, David M; Hakonarson, Hakon; Bisgaard, Hans Flinker.

    In: Nature Genetics, Vol. 46, 2014, p. 51-55.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  16. Published
  17. Published

    A kinetic model of thiamine biosynthesis in Escherichia coli. / Matos, Marta; Herrgard, Markus; Andersen, Mikael Rørdam; Sonnenschein, Nikolaus.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  18. E-pub ahead of print

    Amino acid and glucose metabolism in fed-batch CHO cell culture affects antibody production and glycosylation. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published

    Analysis of pan-genome content and its application in microbial identification. / Lukjancenko, Oksana; Ussery, David (Main supervisor); Larsen, Mette Voldby (Supervisor).

    Technical University of Denmark, 2014. 177 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  20. Published

    Analysis of surface binding sites (SBSs) in carbohydrate active enzymes with focus on glycoside hydrolase families 13 and 77 : — a mini-review. / Cockburn, Darrell; Wilkens, Casper; Ruzanski, Christian; Andersen, Susan; Willum Nielsen, Jonas; Smith, Alison M.; Field, Robert A.; Willemoes, Martin; Abou Hachem, Maher ; Svensson, Birte.

    In: Biologia, Vol. 69, No. 6, 2014, p. 705-712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  21. Published
  22. Published

    An elevated pro-inflammatory cytokine profile in multiple chemical sensitivity. / Dantoft, Thomas Meinertz; Elberling, J.; Pedersen, Susanne Brix; Szecsi, P.B.; Vesterhauge, S.; Skovbjerg, S.

    In: Psychoneuroendocrinology, Vol. 40, 2014, p. 140-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published

    An integrated catalog of reference genes in the human gut microbiome. / Li, Junhua; Jia, Huijue; Cai, Xianghang; Zhong, Huanzi; Feng, Qiang; Sunagawa, Shinichi; Arumugam, Manimozhiyan; Kultima, Jens Roat; Prifti, Edi; Nielsen, Trine; Juncker, Agnieszka; Nielsen, Henrik Bjørn; Brunak, Søren.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 834-841.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. Published
  25. Published

    An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. / Brownstein, Catherine A ; Beggs, Alan H ; Homer, Nils ; Merriman, Barry ; Yu, Timothy W; Flannery, Katherine C ; DeChene, Elizabeth T ; Towne, Meghan C ; Savage, Sarah K ; Price, Emily N ; Dworzynski, Piotr.

    In: Genome Biology (Online Edition), Vol. 15, R53, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  26. Published

    Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. / Lundby, Alicia; Rossin, Elizabeth J.; Steffensen, Annette B.; Acha, Moshe Ray; Newton-Cheh, Christopher; Pfeufer, Arne; Lyneh, Stacey N.; Olesen, Søren-Peter; Brunak, Søren; Ellinor, Patrick T.; Jukema, J. Wouter; Trompet, Stella; Ford, Ian; Macfarlane, Peter W.; Krijthe, Bouwe P.; Hofman, Albert; Uitterlinden, Andre G.; Stricker, Bruno H.; Nathoe, Hendrik M.; Spiering, Wilko; Daly, Mark J.; Asselbergs, Folkert W.; van der Harst, Pim; Milan, David J.; de Bakker, Paul I. W.; Lage, Kasper; Olsen, Jesper V.

    In: Nature Methods, Vol. 11, No. 8, 2014, p. 868-874.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  27. Published
  28. Published

    A novel platform for heterologous gene expression in Trichoderma reesei (Teleomorph Hypocrea jecorina). / Jørgensen, Mikael Skaanning; Skovlund, Dominique Aubert; Johannesen, Pia Francke; Mortensen, Uffe Hasbro.

    In: Microbial Cell Factories, Vol. 13, No. 1, 2014, p. 33.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  29. E-pub ahead of print

    Antibiofilm Properties of Acetic Acid. / Bjarnsholt, Thomas; Alhede, Morten; Jensen, Peter Østrup; Nielsen, Anne K.; Johansen, Helle Krogh; Homøe, Preben; Høiby, Niels; Givskov, Michael Christian; Kirketerp-Møller, Klaus.

    In: Advances in Wound Care, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  30. Published

    Antibiotic Resistance : Adaptive Evolution & Dissemination of Resistance Genes. / Munck, Christian; Sommer, Morten (Main supervisor).

    Department of Systems Biology, DTU, 2014. 129 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  31. Published

    Antibody informatics for drug discovery. / Shirai, Hiroki; Prades, Catherine; Vita, Randi; Marcatili, Paolo; Popovic, Bojana; Xu, Jianqing; Overington, John P.; Hirayama, Kazunori; Soga, Shinji; Tsunoyama, Kazuhisa; Clark, Dominic; Lefranc, Marie-Paule; Ikeda, Kazuyoshi.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 11, 2014, p. 2002-2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  32. Published

    Antibody structural modeling with prediction of immunoglobulin structure (PIGS).. / Marcatili, Paolo; Olimpieri, Pier Paolo; Chailyan, Anna; Tramontano, Anna.

    In: Nature Protocols, Vol. 9, No. 12, 2014, p. 2771-2783.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  33. Published
  34. Published
  35. Published

    A random set scoring model for prioritization of disease candidate genes using protein complexes and data-mining of GeneRIF, OMIM and PubMed records.. / Jiang, Li; Edwards, Stefan M.; Thomsen, Bo; Workman, Christopher; Guldbrandtsen, Bernt; Sørensen, Peter.

    In: BMC Bioinformatics, Vol. 15, No. 315, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  36. Published

    A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. / Clemente, Florian J. ; Cardona, Alexia; Inchley, Charlotte E. ; Peter, Benjamin M. ; Jacobs, Guy; Pagani, Luca ; Lawson, Daniel J. ; Antão, Tiago ; Vicente, Mário ; Mitt, Mario ; Rasmussen, Simon.

    In: American Journal of Human Genetics, Vol. 95, No. 5, 2014, p. 584–589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  37. E-pub ahead of print
  38. Published

    Aspergillus pragensis sp nov discovered during molecular reidentification of clinical isolates belonging to Aspergillus section Candidi. / Lyskova, Pavlina; Hubka, Vit; Kolarik, Miroslav; Skorepova, Magdalena; Peterson, Stephen W.; Frisvad, Jens Christian.

    In: Medical Mycology, Vol. 52, No. 6, 2014, p. 565-576.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  39. Published

    Assessment of aflatoxigenicAspergillusand other fungi in millet and sesame from Plateau State, Nigeria. / Ezekiel, C.N.; Udom, I.E.; Frisvad, Jens Christian; Adetunji, M.C.; Houbraken, J.; Fapohunda, S.O.; Samson, R.A.; Atanda, O.O.; Agi-Otto, M.C.; Onashile, O.A.

    In: Mycology, Vol. 5, No. 1, 2014, p. 16-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  40. Published

    A sustainable route to produce the scytonemin precursor using Escherichia coli. / Malla, Sailesh; Sommer, Morten O. A.

    In: Green Chemistry, Vol. 16, No. 6, 2014, p. 3255-3265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  41. Published

    A taxonomic and phylogenetic revision of Penicillium section Aspergilloides. / Houbraken, J.; Visagie, C.M.; Meijer, M.; Frisvad, Jens Christian; Busby, P.E.; Pitt, J.I.; Seifert, K.A.; Louis-Seize, G.; Demirel, R.; Yilmaz, N.; Jacobs, K.; Christensen, M.; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 373-451.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  42. Published
  43. E-pub ahead of print

    A β1-6/β1-3 galactosidase fromBifidobacterium animalissubsp.lactisBl-04 gives insight into sub-specificities of β-galactoside catabolism withinBifidobacterium. / Viborg, Alexander Holm; Fredslund, Folmer; Katayama, Takane; Nielsen, Stinne Kirketerp; Svensson, Birte; Kitaoka, Motomitsu; Leggio, Leila Lo; Abou Hachem, Maher .

    In: Molecular Microbiology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    Bacterial diversity in snow on North Pole ice floes. / Hauptmann, Aviaja Zenia Edna Lyberth; Stibal, Marek ; Bælum, Jacob; Sicheritz-Pontén, Thomas; Brunak, Søren; Bowman, Jeff S.; Hansen, Lars H. ; Jacobsen, Carsten S.; Blom, Nikolaj.

    In: Extremophiles, Vol. 18, 2014, p. 945-951.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  45. Published
  46. Published
  47. Published
  48. Published
  49. Published

    Biological insights from 108 schizophrenia-associated genetic loci. / Ripke, Stephan; Neale, Benjamin M.; Corvin, Aiden ; Walters, James T. R. ; Farh, Kai-How ; Holmans, Peter A. ; Lee, Phil ; Bulik-Sullivan, Brendan ; Collier, David A. ; Huang, Hailiang ; Pers, Tune Hannes; Agerbo, Esben ; Demontis, Ditte ; Hansen, Thomas; Hollegaard, Mads Vilhelm; Hougaard, David M.; Mors, Ole; Werge, Thomas.

    In: Nature, Vol. 511, 2014, p. 421-427.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  50. Published

    Brazil nuts are subject to infection with B and G aflatoxin-producing fungus, Aspergillus pseudonomius. / Massi, Fernanda Pelisson; Cameiro Vieira, Maria Lucia; Sartori, Daniele; Silva Penha, Rafael Elias; Munhoz, Carla de Freitas; Ferreira, Josue Maldonado; Iamanaka, Beatriz Thie; Taniwaki, Marta Hiromi; Frisvad, Jens Christian; Pelegrinelli Fungaro, Maria Helena.

    In: INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, Vol. 186, 2014, p. 14-21.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  51. Published

    Cesarean section imprints cord blood immune cell distributions. / Thysen, Anna Hammerich; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Stokholm, J.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 438, 2014, p. 192-192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  52. Published
  53. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  54. Published

    Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery.. / Hansen, Andreas M.; Rasmussen, Michael; Svitek, Nicholas; Harndahl, Mikkel; Golde, William T.; Barlow, John; Nene, Vishvanath; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 12, 2014, p. 705-718.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  55. E-pub ahead of print
  56. Published

    Chemical Characterization, Antioxidant and Enzymatic Activity of Brines from Scandinavian Marinated Herring Products. / Gringer, Nina; Osman, Ali; Nielsen, Henrik Hauch; Undeland, Ingrid; Baron, Caroline P.

    In: Journal of Food Processing & Technology, Vol. 5, No. 346, 1000346, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  57. Published

    Children developing asthma by school-age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, S.; Rasmussen, M.A.; Bisgaard, H.

    In: ALLERGY, Vol. 69, No. s99, 404, 2014, p. 179-179.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  58. Published

    Children with asthma by school age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, Sune; Rasmussen, Morten Arendt; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 133, No. 4, 2014, p. 1008-1013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  59. Published
  60. Published

    Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections. / Feliziani, Sofia; Marvig, Rasmus Lykke; Lujan, Adela M.; Moyano, Alejandro J.; Di Rienzo, Julio A.; Johansen, Helle Krogh; Molin, Søren; Smania, Andrea M.

    In: P L o S Genetics, Vol. 10, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  61. Published

    Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. / Geertz-Hansen, Henrik Marcus; Blom, Nikolaj; Feist, Adam; Brunak, Søren; Petersen, Thomas Nordahl.

    In: Proteins, Vol. 82, No. 9, 2014, p. 1819-1828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  62. Published
  63. Published

    Combining Experiments and Simulations Using the Maximum Entropy Principle. / Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten.

    In: P L o S Computational Biology (Online), Vol. 10, No. 2, e1003406, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  64. Published

    Comparative Genomic and Metabolomic Analysis of Twelve Strains of Pseudoalteromonas luteoviolacea. / Månsson, Maria; Vynne, Nikolaj Grønnegaard; Klitgaard, Andreas; Melchiorsen, Jette; Dorrestein, Pieter C.; Gram, Lone.

    2014. Poster session presented at Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  65. Published

    Comparison of the Web Tools ARG-ANNOT and ResFinder for Detection of Resistance Genes in Bacteria. / Zankari, Ea.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 8, 2014, p. 4986-4986.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  66. Published

    Compass: A hybrid method for clinical and biobank data mining. / Krysiak-Baltyn, Konrad; Petersen, Thomas Nordahl; Audouze, Karine Marie Laure; Jørgensen, Niels; Ängquist, L.; Brunak, Søren.

    In: Journal of Biomedical Informatics, Vol. 47, 2014, p. 160-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  67. Published

    Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn. / Fahnøe, Ulrik; Höper, Dirk ; Beer, Martin; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 1, e01142-13, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  68. Published

    Complete Genome Sequence of Classical Swine Fever Virus Genotype 2.2 Strain Bergen. / Fahnøe, Ulrik; Lohse, Louise; Becher, Paul ; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 3, 2014, p. e00483-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  69. Published

    Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes. / Zelezniak, Aleksej; Sheridan, Steven; Patil, Kiran Raosaheb.

    In: P L o S Computational Biology, Vol. 10, No. 4, e1003572, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  70. E-pub ahead of print
  71. Published

    CoreFlow: A computational platform for integration, analysis and modeling of complex biological data. / Pasculescu, Adrian; Schoof, Erwin; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D.; Pawson, Tony; Linding, Rune; Colwill, Karen.

    In: Journal of Proteomics, Vol. 100, 2014, p. 167-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  72. Published
  73. E-pub ahead of print

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  74. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  75. Published

    Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. / Kim, Yohan; Sidney, John; Buus, Søren; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: B M C Bioinformatics, Vol. 15, No. 1, 241, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  76. Published

    Defining the role of common variation in the genomic and biological architecture of adult human height. / Wood, Andrew R. ; Esko, Tonu; Yang, Jian; Vedantam, Sailaja; Pers, Tune Hannes; Gustafsson, Stefan; Chun, Audrey Y. ; Estrada, Karol; Luan, Jian'an; Folkersen, Lasse.

    In: Nature Genetics, Vol. 46, No. 11, 2014, p. 1173-1186.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  77. Published
  78. Published

    Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. / Olalde, Inigo; Allentoft, Morten E.; Sanchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W. K.; DeGiorgio, Michael; Prado-Martinez, Javier; Rodriguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramirez, Oscar; Marigorta, Urko M.; Fernandez-Callejo, Marcos; Prada, Maria Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G.; Novembre, John; Sturm, Richard A.; Sabeti, Pardis; Marques-Bonet, Tomas; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles.

    In: NATURE, Vol. 507, No. 7491, 2014, p. 225-228.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  79. Published

    Detection of a caspase-3 cleaved tau fragment in the serum of alzheimer's patients by using immunoprecipitation and lc-ms/ms. / Inekci, Dilek; Hägglund, Per; Linemann, Thomas; Jacobsen, Susanne; Svensson, Birte; Vilholm, Ole; Henriksen, Kim.

    In: Alzheimer's & Dementia, Vol. 10, No. 4, 2014, p. P272-P273.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  80. Published

    Determining and comparing protein function in Bacterial genome sequences. / Vesth, Tammi Camilla; Ussery, David (Main supervisor); Lagesen, Karin (Supervisor).

    Technical University of Denmark, 2014. 101 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  81. Published

    Development of droplets‐based microfluidic systems for single­‐cell high‐throughput screening. / Chen, Jun; Jensen, Thomas Glasdam; Godina, Alexei; Solem, Christian; Dufva, Martin; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  82. Published

    Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution. / Fisher, Rosalie; Horswell, Stuart; Rowan, Andrew; Salm, Maximilian P.; de Bruin, Elza C.; Gulati, Sakshi; McGranahan, Nicholas; Stares, Mark; Gerlinger, Marco; Varela, Ignacio; Crockford, Andrew; Favero, Francesco; Quidville, Virginie; André, Fabrice; Navas, Carolina; Grönroos, Eva; Nicol, David; Hazell, Steve; Hrouda, David; O’Brien, Tim; Matthews, Nik; Phillimore, Ben; Begum, Sharmin; Rabinowitz, Adam; Biggs, Jennifer; Bates, Paul A.; McDonald, Neil Q.; Stamp, Gordon; Spencer-Dene, Bradley; Hsieh, James J.; Xu, Jianing; Pickering, Lisa; Gore, Martin; Larkin, James; Swanton, Charles.

    In: Genome Biology (Online Edition), Vol. 15, No. 8, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  83. E-pub ahead of print

    Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides. / Bonde, Mads; Kosuri, Sriram; Genee, Hans Jasper; Sarup-Lytzen, Kira; Church, George M.; Sommer, Morten; Wang, Harris H.

    In: A C S Synthetic Biology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  84. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium. / Koivula, Robert W.; Heggie, Alison; Barnett, Anna; Cederberg, Henna; Hansen, Tue Haldor; Koopman, Anitra D.; Ridderstrale, Martin; Rutters, Femke; Vestergaard, Henrik; Gupta, Ramneek; Herrgard, Sanna; Heymans, Martijn W.; Perry, Mandy H.; Rauh, Simone; Siloaho, Maritta; Teare, Harriet J. A.; Thorand, Barbara; Bell, Jimmy; Brunak, Søren; Frost, Gary; Jablonka, Bernd; Mari, Andrea; McDonald, Tim J.; Dekker, Jacqueline M.; Hansen, Torben; Hattersley, Andrew; Laakso, Markku; Pedersen, Oluf; Koivisto, Veikko; Ruetten, Hartmut; Walker, Mark; Pearson, Ewan; Franks, Paul W.

    In: DIABETOLOGIA, Vol. 57, No. 6, 2014, p. 1132-1142.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  85. Published

    Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA. / Eriksson, Robert; Aagaard, Lise; Jensen, Lars Juhl; Borisova, Liza; Hørlück, Dorte; Brunak, Søren; Hansen, Ebba Holme.

    In: Pharmacology Research & Perspectives, Vol. 2, No. 3, e00038, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  86. Published

    Distinct substrate specificities of three glycoside hydrolase family 42 β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697. / Viborg, Alexander Holm; Katayama, Takane; Abou Hachem, Maher ; Andersen, Mathias Bækbo; Nishimoto, Mamoru; Clausen, Mads Hartvig; Urashima, Tadasu; Svensson, Birte; Kitaoka, Motomitsu.

    In: Glycobiology, Vol. 24, No. 2, 2014, p. 208-216.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  87. Published

    Diversity Generation in Evolving Microbial Populations. / Markussen, Trine; Jelsbak, Lars (Main supervisor); Molin, Søren (Supervisor).

    Technical University of Denmark, 2014. 126 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  88. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. / Sander, Adam F.; Lavstsen, Thomas; Rask, Thomas Salhøj; Lisby, Michael; Salanti, Ali; Fordyce, Sarah L.; Jespersen, Jakob S.; Carter, Richard; Deitsch, Kirk W.; Theander, Thor G.; Pedersen, Anders Gorm; Arnot, David E.

    In: Nucleic Acids Research, Vol. 42, No. 4, 2014, p. 202270-2281.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  89. Published

    Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, No. 4, 2014, p. 237-247.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  90. Published

    Draft Genome Sequence of Hoeflea sp. Strain BAL378, a Potential Producer of Bioactive Compounds. / Bentzon-Tilia, Mikkel; Riemann, Lasse; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 6, 2014, p. e01213-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  91. Published

    Draft Genome Sequence of Photobacterium halotolerans S2753, Producer of Bioactive Secondary Metabolites.. / Machado, Henrique; Månsson, Maria; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 3, e00535-14, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  92. E-pub ahead of print

    Drought priming at vegetative growth stages improves tolerance to drought and heat stresses occurring during grain filling in spring wheat. / Wang, Xiao; Vignjevic, Marija; Liu, Fulai; Jacobsen, Susanne; Jiang, Dong; Wollenweber, Bernd .

    In: Plant Growth Regulation, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  93. E-pub ahead of print

    Dynamic single-cell analysis of Saccharomyces cerevisiae under process perturbation: Comparison of different methods for monitoring the intensity of population heterogeneity. / Delvigne, Frank; Baert, Jonathan; Gofflot, Sébastien; Lejeune, Annick; Telek, Samuel; Johanson, Ted; Eliasson Lantz, Anna.

    In: Journal of Chemical Technology and Biotechnology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  94. Published

    Early immune response patterns to pathogenic bacteria are associated to increased risk of lower respiratory infections in children. / Vissing, N. H.; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Thysen, Anna Hammerich; Chawes, B. L.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 84, 2014, p. 37-37.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  95. Published
  96. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  97. Published

    Effects of pregnancy on obesity-induced inflammation in a mouse model of fetal programming. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, D.; Nordby, Pernille; Nielsen, Kristian Fog; Ozanne, S. E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: International Journal of Obesity, Vol. 38, No. 10, 2014, p. 1282-1289.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  98. Published

    Effects on metabolic markers are modified by PPARG2 and COX2 polymorphisms in infants randomized to fish oil.. / Harsløf, Laurine B. S.; Damsgaard, Camilla T.; Hellgren, Lars I.; Andersen, Anders Daniel; Vogel, Ulla; Lauritzen, Lotte.

    In: Genes & Nutrition, Vol. 9, No. 3, 396, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  99. Published

    Engineering amino acid supply pathways in Chinese hamster ovary cells. / Ley, Daniel; Lund, Anne Mathilde; Rank, Julie; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2014. Poster session presented at 9. Danish Conference on Biotechnology and Molecular Biology, Denmark.

    Publication: ResearchPoster – Annual report year: 2014

  100. Published

    Enhancing Reproducibility in Cancer Drug Screening: How Do We Move Forward?. / Shi, Leming; Haibe-Kains, Benjamin; Birkbak, Nicolai Juul; Bedard, Philippe L.; Hatzis, Christos; Stern, David F.; Clarke, Robert; Quackenbush, John; Beck, Andrew H.; Aerts, Hugo J. W. L.

    In: Cancer Research, Vol. 74, No. 15, 2014, p. 4016-4023.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  101. Published

    Environmental controls on ozone fluxes in a poplar plantation in Western Europe. / Zona, D.; Gioli, B.; Fares, S.; De Groote, T.; Pilegaard, Kim; Ibrom, Andreas; Ceulemans, R.

    In: Environmental Pollution, Vol. 184, No. Sp. Iss. SI, 2014, p. 201-210.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  102. Published

    Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa.. / Markussen, Trine; Marvig, Rasmus Lykke; Gómez Lozano, María; Aanæs, Kasper; Burleigh, Alexandra E.; Høiby, Niels; Johansen, Helle Krogh; Molin, Søren; Jelsbak, Lars.

    In: mBio (Print), Vol. 5, No. 5, 2014, p. e01592-e01514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  103. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts. / Boomsma, Wouter; Tian, Pengfei; Frellsen, J.; Ferkinghoff-Borg, Jesper; Hamelryck, T.; Lindorff-Larsen, K.; Vendruscolo, M.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 38, 2014, p. 13852-13857.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  104. Published

    Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, 2014, p. 379.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  105. Published

    Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property. / Chan, Siu Hung Joshua; Solem, Christian; Jensen, Peter Ruhdal; Ji, P.

    In: Bioinformatics, Vol. 30, No. 22, 2014, p. 3232-3239.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  106. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  107. Published

    Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations.. / Sandberg, Troy E.; Pedersen, Margit; LaCroix, Ryan A.; Ebrahim, Ali; Bonde, Mads; Herrgard, Markus; Palsson, Bernhard; Sommer, Morten; Feist, Adam.

    In: Molecular Biology and Evolution, Vol. 31, No. 10, 2014, p. 2647-2662.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  108. Published
  109. Published

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, Vol. 71, No. 2, 2014, p. 905-929.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  110. Published

    Experimental and computational tools for analysis of signaling networks in primary cells. / Schoof, Erwin M; Linding, Rune.

    In: Current Protocols in Immunology, Vol. 104, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  111. Accepted
  112. Published
  113. Published

    Exploring mechanisms of diet-colon cancer associations through candidate molecular interaction networks. / Westergaard, David; Li, Jun; Jensen, Kasper; Kouskoumvekaki, Irene; Panagiotou, Gianni.

    In: B M C Genomics, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  114. Published
  115. Published

    Expression of regulators of mitotic fidelity are associated with intercellular heterogeneity and chromosomal instability in primary breast cancer.. / Roylance, Rebecca; Endesfelder, David; Jamal-Hanjani, Mariam; Burrell, Rebecca A.; Gorman, Patricia; Sander, Jil; Murphy, Niamh; Birkbak, Nicolai Juul; Hanby, Andrew M.; Speirs, Valerie; Johnston, Stephen R. D.; Kschischo, Maik; Swanton, Charles.

    In: Breast Cancer Research and Treatment, Vol. 148, No. 1, 2014, p. 221-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  116. Published

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour ; Brunak, Søren.

    In: Briefings in Bioinformatics, Vol. 15, No. 6, 2014, p. 942-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  117. Published
  118. Published

    Front line defenders of the ecological niche! Screening the structural diversity of peptaibiotics from saprotrophic and fungicolous Trichoderma/Hypocrea species. / Röhrich, Christian René; Jaklitsch, Walter Michael; Voglmayr, Hermann; Iversen, Anita; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; von Döhren, Hans; Brückner, Hans; Degenkolb, Thomas.

    In: Fungal Diversity, Vol. 69, 2014, p. 117-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  119. Published

    Fusarium. / Thrane, Ulf.

    Encyclopedia of Food microbiology. Vol. 2 2nd. ed. Elsevier, 2014. p. 76-81.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  120. Published

    Fusarium graminearum PKS14 is involved in orsellinic acid and orcinol synthesis. / Jørgensen, Simon Hartung ; Frandsen, Rasmus John Normand; Nielsen, Kristian Fog; Lysøe, Erik; Sondergaard, Teis Esben; Wimmer, Reinhard; Giese, Henriette; Sørensen, Jens Laurids.

    In: Fungal Genetics and Biology, Vol. 70, 2014, p. 24-31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  121. Published

    Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. / Arking, Dan E; Pulit, Sara L; Crotti, Lia; van der Harst, Pim; Munroe, Patricia B; Koopmann, Tamara T; Sotoodehnia, Nona; Rossin, Elizabeth J; Morley, Michael; Wang, Xinchen; Johnson, Andrew D; Lundby, Alicia; Gudbjartsson, Daniel F.; Noseworthy, Peter A; Eijgelsheim, Mark; Bradford, Yuki; Tarasov, Kirill V; Dörr, Marcus; Müller-Nurasyid, Martina; Lahtinen, Annukka M; Nolte, Ilja M; Smith, Albert Vernon; Bis, Joshua C; Isaacs, Aaron; Newhouse, Stephen J; Evans, Daniel S; Post, Wendy S; Waggott, Daryl; Lyytikäinen, Leo-Pekka; Hicks, Andrew A; Eisele, Lewin; Ellinghaus, David; Hayward, Caroline; Navarro, Pau; Ulivi, Sheila; Tanaka, Toshiko; Tester, David J; Chatel, Stephanie; Gustafsson, Stefan; Kumari, Meena; Morris, Richard W; Naluai, Asa T; Padmanabhan, Sandosh; Kluttig, Alexander; Strohmer, Bernhard; Panayiotou, Andrie G; Torres, Maria; Knoflach, Michael; Hubacek, Jaroslav A; Slowikowski, Kamil; Raychaudhuri, Soumya; Kumar, Runjun D; Harris, Tamara B; Launer, Lenore J; Shuldiner, Alan R; Alonso, Alvaro; Bader, Joel S; Ehret, Georg; Huang, Hailiang; Kao, W H Linda; Strait, James B; Macfarlane, Peter W; Brown, Morris; Caulfield, Mark J; Samani, Nilesh J; Kronenberg, Florian; Willeit, Johann; Smith, J Gustav; Greiser, Karin H; Meyer Zu Schwabedissen, Henriette; Werdan, Karl; Carella, Massimo; Zelante, Leopoldo; Heckbert, Susan R; Psaty, Bruce M; Rotter, Jerome I; Kolcic, Ivana; Polasek, Ozren; Wright, Alan F; Griffin, Maura; Daly, Mark J; Arnar, David O; H��lm, Hilma; Thorsteinsdottir, Unnur; Denny, Joshua C; Roden, Dan M; Zuvich, Rebecca L; Emilsson, Valur; Plump, Andrew S; Larson, Martin G; O'Donnell, Christopher J; Yin, Xiaoyan; Bobbo, Marco; D'Adamo, Adamo P; Iorio, Annamaria; Sinagra, Gianfranco; Carracedo, Angel; Cummings, Steven R; Nalls, Michael A; Jula, Antti; Kontula, Kimmo K; Marjamaa, Annukka; Oikarinen, Lasse; Perola, Markus; Porthan, Kimmo; Erbel, Raimund; Hoffmann, Per; Jöckel, Karl-Heinz; Kälsch, Hagen; Nöthen, Markus M; den Hoed, Marcel; Loos, Ruth J F; Thelle, Dag S; Gieger, Christian; Meitinger, Thomas; Perz, Siegfried; Peters, Annette; Prucha, Hanna; Sinner, Moritz F; Waldenberger, Melanie; de Boer, Rudolf A; Franke, Lude; van der Vleuten, Pieter A; Beckmann, Britt Maria; Martens, Eimo; Bardai, Abdennasser; Hofman, Nynke; Wilde, Arthur A M; Behr, Elijah R; Dalageorgou, Chrysoula; Giudicessi, John R; Medeiros-Domingo, Argelia; Barc, Julien; Kyndt, Florence; Probst, Vincent; Ghidoni, Alice; Insolia, Roberto; Hamilton, Robert M; Scherer, Stephen W; Brandimarto, Jeffrey; Margulies, Kenneth; Moravec, Christine E; Fabiola, no-firstname; Fuchsberger, Christian; O'Connell, Jeffrey R; Lee, Wai K; Watt, Graham C M; Campbell, Harry; Wild, Sarah H; El Mokhtari, Nour E; Frey, Norbert; Asselbergs, Folkert W; Leach, Irene Mateo; Navis, Gerjan; van den Berg, Maarten P; van Veldhuisen, Dirk J; Kellis, Manolis; Krijthe, Bouwe P; Franco, Oscar H; Hofman, Albert; Kors, Jan A; Uitterlinden, Andre G.; Witteman, Jacqueline C M; Kedenko, Lyudmyla; Lamina, Claudia; Oostra, Ben A; Abecasis, Goncalo R; Lakatta, Edward G; Mulas, Antonella; Orrú, Marco; Schlessinger, David; Uda, Manuela; Markus, Marcello R P; Völker, Uwe; Snieder, Harold; Spector, Timothy D; Arnlöv, Johan; Lind, Lars; Sundström, Johan; Syvänen, Ann-Christine; Kivimaki, Mika; Kähönen, Mika; Mononen, Nina; Raitakari, Olli T; Viikari, Jorma S; Adamkova, Vera; Kiechl, Stefan; Brion, Maria; Nicolaides, Andrew N; Paulweber, Bernhard; Haerting, Johannes; Dominiczak, Anna F; Nyberg, Fredrik; Whincup, Peter H; Hingorani, Aroon D; Schott, Jean-Jacques; Bezzina, Connie R; Ingelsson, Erik; Ferrucci, Luigi; Gasparini, Paolo; Wilson, James F; Rudan, Igor; Franke, Andre; Mühleisen, Thomas W; Pramstaller, Peter P; Lehtimäki, Terho J; Paterson, Andrew D; Parsa, Afshin; Liu, Yongmei; van Duijn, Cornelia M; Siscovick, David S; Gudnason, Vilmundur; Jamshidi, Yalda; Salomaa, Veikko; Felix, Stephan B; Sanna, Serena; Ritchie, Marylyn D; Stricker, Bruno H; Stefansson, Kari; Boyer, Laurie A; Cappola, Thomas P; Olsen, Jesper V; Hansen, Kasper Lage; Schwartz, Peter J; Kääb, Stefan; Chakravarti, Aravinda; Ackerman, Michael J; Pfeufer, Arne; de Bakker, Paul I W; Newton-Cheh, Christopher; no-lastname, no-firstname.

    In: Nature Genetics, Vol. 46, No. 8, 2014, p. 826-836.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  122. Published

    Genetic Basis for Saccharomyces cerevisiae Biofilm in Liquid Medium. / Andersen, Kaj Scherz; Bojsen, Rasmus Kenneth; Gro Rejkjær Sørensen, Laura; Weiss Nielsen , Martin ; Lisby, Michael; Folkesson, Sven Anders; Regenberg, Birgitte.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 4, 2014, p. 1671-1680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  123. Published

    Genetic transformation of Fusarium avenaceum by Agrobacterium tumefaciens mediated transformation and the development of a USER-Brick vector construction system. / Sorensen, Lisette Quaade; Lysøe, Erik; Larsen, Jesper Erup; Khorsand-Jamal, Paiman; Nielsen, Kristian Fog; Frandsen, Rasmus John Normand.

    In: B M C Molecular Biology, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  124. Published

    Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans. / Moreno-Mayar, J. Víctor; Rasmussen, Simon; Seguin-Orlando, Andaine; Rasmussen, Morten; Liang, Mason; Flåm, Siri Tennebø; Lie, Benedicte Alexandra; Gilfillan, Gregor Duncan; Nielsen, Rasmus; Thorsby, Erik; Willerslev, Eske; Malaspinas, Anna-Sapfo.

    In: Current Biology, Vol. 24, No. 21, 2014, p. 2518-2525.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  125. Published

    Genome-wide association analyses identify variants in developmental genes associated with hypospadias. / Geller, Frank; Feenstra, Bjarke; Carstensen, Lisbeth; Pers, Tune H.; van Rooij, Iris A. L. M.; Korberg, Izabella Baranowska; Choudhry, Shweta; Karjalainen, Juha M.; Schnack, Tine H.; Hollegaard, Mads V.; Feitz, Wout F. J.; Roeleveld, Nel; Hougaard, David M.; Hirschhorn, Joel N.; Franke, Lude; Baskin, Laurence S.; Nordenskjold, Agneta; van der Zanden, Loes F. M.; Melbye, Mads.

    In: Nature Genetics, Vol. 46, No. 9, 2014, p. 957-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  126. Published
  127. E-pub ahead of print

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  128. Published
  129. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL/6 mice fed and high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2014. Abstract from The Danish Microbiological Society Annual Congress 2014, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  130. Published
  131. Published
  132. Published

    Guanidino groups greatly enhance the action of antimicrobial peptidomimetics against bacterial cytoplasmic membranes.. / Andreev, Konstantin; Bianchi, Christopher; Laursen, Jonas Striegler; Citterio, Linda; Hein-Kristensen, Line; Gram, Lone; Kuzmenko, Ivan; Olsen, Christian Adam; Gidalevitz, David.

    In: Biochimica et Biophysica Acta. Biomembranes, Vol. 1838, No. 10, 2014, p. 2492-2502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  133. Published

    Hearing loss in relation to sound exposure of professional symphony orchestra musicians. / Schmidt, J. H. ; Pedersen, E. R.; Paarup, H. M.; Christensen-Dalsgaard, Jakob; Andersen, T; Poulsen, T.; Bælum, Jacob.

    In: Ear and Hearing, Vol. 35, No. 4, 2014, p. 448-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  134. Published

    High-Resolution Melt Analysis for Rapid Comparison of Bacterial Community Compositions. / Hjelmsø, Mathis Hjort; Hansen, Lars Hestbjerg; Bælum, Jacob; Feld, Louise; Holben, William E.; Jacobsen, Carsten Suhr.

    In: Applied and Environmental Microbiology, Vol. 80, No. 12, 2014, p. 3568-3575.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  135. Published

    Host genome variations and risk of infections during induction treatment for childhood acute lymphoblastic leukaemia. / Lund, Bendik; Wesolowska-Andersen, Agata; Lausen, Birgitte; Borst, Louise; Rasmussen, Kirsten Kørup; Müller, Klaus; Klungland, Helge; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: European Journal of Haematology, Vol. 92, No. 4, 2014, p. 321-330.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  136. Published

    Human Intestinal Cells Modulate Conjugational Transfer of Multidrug Resistance Plasmids between Clinical Escherichia coli Isolates.. / Machado, Ana Manuel; Sommer, Morten.

    In: P L o S One, Vol. 9, No. 6, 2014, p. e100739.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  137. Published

    Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank). / Tsangaras, Kyriakos; Wales, Nathan; Sicheritz-Pontén, Thomas; Rasmussen, Simon; Michaux, Johan; Ishida, Yasuko; Morand, Serge; Kampmann, Marie-Louise; Gilbert, M. Thomas P.; Greenwood, Alex D.

    In: PLOS ONE, Vol. 9, No. 10, e109101, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  138. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  139. Published

    Identification and fine mapping of a linear B cell epitope of human vimentin.. / Dam, Catharina Essendrup; Houen, Gunnar; Hansen, Paul R.; Trier, Nicole H.

    In: Scandinavian Journal of Clinical & Laboratory Investigation, Vol. 74, No. 6, 2014, p. 506-514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  140. Published

    Identification and HLA-Tetramer-Validation of Human CD4(+) and CD8(+) T Cell Responses against HCMV Proteins IE1 and IE2. / Braendstrup, Peter; Mortensen, Bo Kok; Justesen, Sune Frederik Lamdahl; Osterby, Thomas; Rasmussen, Michael; Hansen, Andreas Martin; Christiansen, Claus Bohn; Hansen, Morten Bagge; Nielsen, Morten; Vindelov, Lars; Buus, Søren; Stryhn, Anette.

    In: PLOS ONE, Vol. 9, No. 4, e94892, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  141. Published

    Identification and nomenclature of the genus Penicillium. / Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 343-371.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  142. Published

    Identification of Bacterial Small RNAs by RNA Sequencing. / Gómez Lozano, María; Marvig, Rasmus Lykke; Molin, Søren; Long, Katherine.

    Pseudomonas Methods and Protocols. ed. / Alain Filloux; Juan-Luis Ramos. Springer Science+Business Media B.V., 2014. p. 433-456 (Methods in Molecular Biology, Vol. 1149).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  143. Published

    Identification of Hypoxia-Regulated Proteins Using MALDI-Mass Spectrometry Imaging Combined with Quantitative Proteomics. / Djidja, Marie-Claude; Chang, Joan; Hadjiprocopis, Andreas; Schmich, Fabian; Sinclair, John; Mršnik, Martina; Schoof, Erwin M.; Barker, Holly E.; Linding, Rune; Jørgensen, Claus; Erler, Janine T.

    In: Journal of Proteome Research, Vol. 13, 2014, p. 2297-2313.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  144. Published

    Identification of Metabolic Pathways Essential for Fitness of Salmonella Typhimurium In Vivo. / Jelsbak, Lotte; Hartman, Hassan ; Schroll, Casper; Rosenkrantz, Jesper Tjørnholt; Lemire, Sebastien; Wallrodt, Inke; Thomsen, Line Elnif; Poolman, Mark ; Kilstrup, Mogens; Jensen, Peter Ruhdal; Olsen, John E.

    In: P L o S One, Vol. 9, No. 7, e101869, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  145. Published

    Identification of Odorant-Receptor Interactions by Global Mapping of the Human Odorome. / Audouze, Karine Marie Laure; Tromelin, Anne; Le Bon, Anne Marie; Belloir, Christine; Petersen, Rasmus Koefoed; Kristiansen, Karsten; Brunak, Søren; Taboureau, Olivier .

    In: PLOS ONE, Vol. 9, No. 4, e93037, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  146. Published

    Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation. / Hartman, Hassan B.; Fell, David A.; Rossell, Sergio; Jensen, Peter Ruhdal; Woodward, Martin J.; Thorndahl, Lotte; Jelsbak, Lotte; Elmerdahl Olsen, John ; Raghunathan, Anu; Daefler, Simon; Poolman, Mark G.

    In: Microbiology, Vol. 160, No. 6, 2014, p. 1252-1266.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  147. E-pub ahead of print

    Identification of the Biosynthetic Gene Clusters for the Lipopeptides Fusaristatin A and W493 B in Fusarium graminearum and F. pseudograminearum. / Sørensen, Jens Laurids; Sondergaard, Teis Esben; Covarelli, Lorenzo; Fuertes, Patricia Romans ; Nielsen, Kristian Fog.

    In: Journal of Natural Products, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  148. Published

    Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags. / Hägglund, Per; Bunkenborg, Jakob; Maeda, Kenji; Finnie, Christine; Svensson, Birte.

    Plant Proteomics: Methods and Protocols. Vol. Part VIII 2014. p. 677-685 (Methods in Molecular Biology, Vol. 1072).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  149. Published

    Immobilization of cellulase mixtures on magnetic particles for hydrolysis of lignocellulose and ease of recycling. / Alftrén, Johan; Hobley, Timothy John.

    In: Biomass and Bioenergy, Vol. 65, 2014, p. 72-78.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  150. Published

    Immunoinformatics of Placental Malaria Vaccine Development. / Jessen, Leon Eyrich; Lund, Ole (Main supervisor); Hviid, Lars (Supervisor); Nielsen, Morten (Supervisor).

    Technical University of Denmark, 2014. 239 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  151. Published

    Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment. / Carrasco Pro, S.; Zimic, M.; Nielsen, Morten.

    In: Tissue Antigens, Vol. 83, No. 2, 2014, p. 94-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  152. Published

    Improved tolerance to drought stress after anthesis due to priming before anthesis in wheat (Triticum aestivum L.) var. Vinjett.. / Wang, Xiao; Vignjevic, Marija; Jiang, Dong; Jacobsen, Susanne; Wollenweber, Bernd .

    In: Journal of Experimental Botany, Vol. 65, No. 22, 2014, p. 6441-6456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  153. Published

    Improving biotech education through gamified laboratory simulations. / Bonde, Mads; Makransky, Guido; Wandall, Jakob; Larsen, Mette Voldby; Morsing, Mikkel; Jarmer, Hanne Østergaard; Sommer, Morten.

    In: Nature Biotechnology, Vol. 32, No. 7, 2014, p. 694-697.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  154. Published

    Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. / Messih, M. A.; Lepore, R.; Marcatili, Paolo; Tramontano, A.

    In: Bioinformatics, Vol. 30, No. 19, 2014, p. 2733-2740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  155. E-pub ahead of print
  156. Published
  157. E-pub ahead of print

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  158. Published

    In silico prediction of Gallibacterium anatis pan-immunogens. / Bager, Ragnhild J.; Kudirkiene, Egle; da Piedade, Isabelle; Seemann, Torsten; Nielsen, Tine K.; Pors, Susanne E.; Mattsson, Andreas Holm; Boyce, John D.; Adler, Ben; Bojesen, Anders M.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  159. Published
  160. Published

    Interaction of Lactobacillus acidophilus NCFM grown on different carbohydrates with human intestinal epithelial cells: Adhesion Properties and roles of S-layer Proteins. / Celebioglu, Hasan Ufuk; Lahtinen, Sampo J; Pedersen, Susanne Brix; Abou Hachem, Maher ; Svensson, Birte.

    2014. Abstract from 11th international Symposium on Lactic Acid Bacteria, Egmond aan Zee, Netherlands.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  161. Published

    Intercorrelations of lipoprotein subfractions and their covariation with lifestyle factors in healthy men. / Parlesak, Alexandr; Eckoldt, Joachim; Winkler, Karl; Bode, Johann Christian.

    In: Journal of Clinical Biochemistry and Nutrition, Vol. 54, No. 3, 2014, p. 174-180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  162. Published
  163. Published

    Prymnesium parvum revisited: relationship between allelopathy, ichthyotoxicity, and chemical profiles in 5 strains. / Blossom, Hannah E.; Rasmussen, Silas Anselm; Andersen, Nikolaj Gedsted; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Hansen, Per J. .

    In: Aquatic Toxicology, Vol. 157, 2014, p. 159-166.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  164. Published
  165. Published
  166. Published

    KinomeXplorer: an integrated platform for kinome biology studies. / Horn, Heiko; Schoof, Erwin; Kim, Jinho; Robin, Xavier; Miller, Martin Lee; Diella, Francesca; Palma, Anita; Cesareni, Gianni; Jensen, Lars Juhl; Linding, Rune.

    In: Nature Methods, Vol. 11, No. 6, 2014, p. 603-604.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  167. Published

    Lactate dehydrogenase as a selection criterion for ipilimumab treatment in metastatic melanoma. / Kelderman, Sander; Heemskerk, Bianca; van Tinteren, Harm; van den Brom, Rob R. H.; A. P. Hospers, Geke; van den Eertwegh, Alfonsus J. M.; W. Kapiteijn, Ellen; Willem B. de Groot, Jan; Soetekouw, Patricia; L. Jansen, Rob; Fiets , Edward; J. S. Furness, Andrew; Renn, Alexandra; Krzystanek, Marcin; Szallasi, Zoltan Imre; Lorigan, Paul; Gore, Martin E.; N. M. Schumacher, Ton; B. A. G. Haanen, John; Larkin, James M.G.; U. Blank, Christian.

    In: Cancer Immunology, Immunotherapy, Vol. 63, No. 5, 2014, p. 449-458.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  168. Published

    Large-scale analysis of B-cell epitopes on influenza virus hemagglutinin - implications for cross-reactivity of neutralizing antibodies.. / Sun, Jing; Kudahl, Ulrich J.; Simon, Christian; Cao, Zhiwei; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Frontiers in Immunology, Vol. 5, 38, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  169. Published

    Large-scale bioreactor production of the herbicide-degrading Aminobacter sp. strain MSH1. / Schultz-Jensen, Nadja; Knudsen, Berith Elkær; Frkova, Zuzana; Aamand, Jens; Johansen, Tina; Thykær, Jette; Sørensen, Sebastian R.

    In: Applied Microbiology and Biotechnology, Vol. 98, No. 5, 2014, p. 2335-2344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  170. Published

    Library sequencing strategies for comparative analysis of stress resistance mechanisms in Escherichia coli strains. / Lennen, Rebecca; Bonde, Ida; Koza, Anna; Herrgard, Markus.

    In: New Biotechnology, Vol. 31, 2014, p. S86.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  171. Published

    Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells.. / Re, Angela; Workman, Christopher T.; Waldron, Levi; Quattrone, Alessandro; Brunak, Søren.

    In: Stem Cell Research, Vol. 13, No. 2, 2014, p. 316-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  172. Published

    Linear versus conformational epitopes of three cow's milk allergens. / Bøgh, Katrine Lindholm; Madsen, Jeanette Lund; Kroghsbo, Stine; Madsen, Charlotte Bernhard; Barkholt, Vibeke.

    In: Clinical and Translational Allergy, Vol. 4 , No. Suppl 2, P23, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  173. Published

    LocTree3 prediction of localization. / Goldberg, T.; Hecht, M.; Hamp, T.; Karl, T.; Yachdav, G.; Ahmed, Nadeed; Altermann, U.; Angerer, P.; Ansorge, S.; Balasz, K.; Bernhofer, M.; Betz, A.; Cizmadija, L.; Do, K. T.; Gerke, J.; Greil, R.; Joerdens, V.; Hastreiter, M.; Hembach, K.; Herzog, M.; Kalemanov, M.; Kluge, M.; Meier, A.; Nasir, H.; Neumaier, U.; Prade, V.; Reeb, J.; Sorokoumov, A.; Troshani, I.; Vorberg, S.; Waldraff, S.; Zierer, J.; Nielsen, Henrik; Rost, B.

    In: Nucleic Acids Research, Vol. 42, No. W1, 2014, p. W350-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  174. Published

    Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis. / Jiricny, Natalie; Molin, Søren; Foster, Kevin; Diggle, Stephen P.; Scanlan, Pauline D.; Ghoul, Melanie; Johansen, Helle Krogh; Santorelli, Lorenzo A.; Popat, Roman; West, Stuart A.; Griffin, Ashleigh S.

    In: P L o S One, Vol. 9, No. 1, 2014, p. Article No.: e83124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  175. Published

    Lysine deacetylase inhibition prevents diabetes by chromatin-independent immunoregulation and β-cell protection.. / Christensen, Dan Ploug; Gysemans, Conny; Lundh, Morten; Dahllöf, Mattias Salling; Noesgaard, Daniel; Schmidt, Søren Fisker; Mandrup, Susanne; Birkbak, Nicolai Juul; Workman, Christopher; Piemonti, Lorenzo; Blaabjerg, Lykke; Monzani, Valmen; Fossati, Gianluca; Mascagni, Paolo; Paraskevas, Steven; Aikin, Reid A; Billestrup, Nils; Grunnet, Lars Groth; Dinarello, Charles A; Mathieu, Chantal; Mandrup-Poulsen, Thomas.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, No. 3, 2014, p. 1055-1059.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  176. Published

    Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. / Mason, Olivia U.; Scott, Nicole M.; Gonzalez, Antonio; Robbins-Pianka, Adam; Bælum, Jacob; Kimbrel, Jeffrey; Bouskill, Nicholas J.; Prestat, Emmanuel; Borglin, Sharon; Joyner, Dominique C.; Fortney, Julian L.; Jurelevicius, Diogo; Stringfellow, William T.; Alvarez-Cohen, Lisa; Hazen, Terry C.; Knight, Rob; Gilbert, Jack A.; Jansson, Janet K.

    In: I S M E Journal, Vol. 8, No. 7, 2014, p. 1464-1475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  177. Published

    Metagenomic Systems Biology of the Human Microbiome. / Bonde, Ida; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2014. 153 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  178. Published

    Methods for dynamic investigations of surface-attached in vitro bacterial and fungal biofilms.. / Sternberg, Claus; Bjarnsholt, Thomas; Shirtliff, Mark.

    Microbial Biofi lms: Methods and Protocols. ed. / Donelli Gianfranco. Vol. 1147 Springer, 2014. p. 3-22 (Methods in Molecular Biology, Vol. 1147).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  179. Published

    Methods for studying biofilm formation: flow cells and confocal laser scanning microscopy.. / Tolker-Nielsen, Tim; Sternberg, Claus.

    Pseudomonas Methods and Protocols. ed. / Alain Filloux; Juan-Luis Ramos. Vol. 1149 Springer, 2014. p. 615-629 (Methods in Molecular Biology, Vol. 1149).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  180. E-pub ahead of print
  181. Published

    Microbial bioreaction process. / Schmidt, Hans Peter (Inventor); Katz, Michael (Inventor); Stenhuus, Bo (Inventor); Förster, Jochen (Inventor).

    IPC No.: US2010203603. Patent No.: WO2008EP59768. Aug 12, 2010.

    Publication: ResearchPatent – Annual report year: 2014

  182. Published

    Microbial production of lysine from sustainable feedstock. / Wang, Zhihao; Grishkova, Maria; Solem, Christian; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  183. Published

    Microbiology: Barriers to the spread of resistance. / Sommer, Morten.

    In: Nature, Vol. 509, 2014, p. 567–568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  184. Published

    Micropeptins from Microcystis sp. collected in Kabul Reservoir, Israel. / Bladt, Tanja Thorskov; Kalifa-Aviv, Sivan; Larsen, Thomas Ostenfeld; Carmeli, Shmuel.

    In: Tetrahedron, Vol. 70, No. 4, 2014, p. 936-943.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  185. Published

    Modeling Cancer Metastasis using Global, Quantitative and Integrative Network Biology. / Schoof, Erwin; Brunak, Søren (Supervisor); Linding, Rune (Main supervisor); Erler, Janine.

    Technical University of Denmark, 2014. 129 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  186. Published

    MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. / Bonde, Mads; Klausen, Michael S.; Anderson, Mads Valdemar; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Nucleic Acids Research, Vol. 12, No. W1, 2014, p. W408-W415.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  187. Published

    Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase. / Schoof, Erwin M.; Linding, Rune; de Medina-Redondo, Maria; Toprak, Umut H.; Meraldi, Patrick; Herzog, Franz; Maiolica, Alessio; Novy, Karel; Hauri, Simon; Gatti, Marco; Penengo, Lorenza; Villa, Fabrizio; Chaikuad, Apirat; Knapp, Stefan; Lou, Hua Jane; Turk, Benjamin E.; Jeganathan, Siva; Aebersold, Ruedi.

    In: Molecular and Cellular Proteomics, Vol. 13, No. 7, 2014, p. 1724-1740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  188. Published

    Modules, networks and systems medicine for understanding disease and aiding diagnosis. / Gustafsson, Mika; Nestor, Colm E.; Zhang, Huan; Barabasi, Albert-Laszlo; Baranzini, Sergio; Brunak, Søren; Chung, Kian Fan; Federoff, Howard J.; Gavin, Anne-Claude; Meehan, Richard R.; Picotti, Paola; Pujana, Miguel Angel; Rajewsky, Nikolaus; Smith, Kenneth G. C.; Sterk, Peter J.; Villoslada, Pablo; Benson, Mikael.

    In: Genome Medicine, Vol. 6, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  189. Published
  190. Published

    Monitoring programmed cell death of living plant tissues in microfluidics using electrochemical and optical techniques. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2014. Abstract from Plant Biology Europe FESPB/EPSO 2014, Dublin, Ireland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  191. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage.. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Gerritsen, Bram; Kesmir, Can; Miles, John J.; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Journal of Experimental Medicine, Vol. 211, No. 8, 2014, p. 1601-1610.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  192. Published

    Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Noyan, Kajsa; Svärd, Jenny; Barqasho, Babilonia; Sönnerborg, Anders; Lund, Ole; Nowak, Piotr; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 192, No. 5, 2014, p. 2099-2108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  193. Published

    Multiple chromosomal gene integration for production of pharmaceutical proteins in S. cerevisiae. / Jensen, Malene; Mortensen, Uffe Hasbro; Gunnarsson, Nina; Strucko, Tomas; Baron, Line Due.

    In: New Biotechnology, Vol. 31, No. Supplement, 2014, p. S192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  194. E-pub ahead of print

    Multi-stress resistance in Lactococcus lactis is actually escape from purine-induced stress sensitivity. / Ryssel, Mia; Hviid, Anne-Mette Meisner; Dawish, Mohamed S.; Haaber, Jakob; Hammer, Karin; Martinussen, Jan; Kilstrup, Mogens.

    In: Microbiology, Vol. 160, 2014, p. 2551-2559.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  195. Published
  196. Published

    Natural mannosylation of HIV-1 gp120 imposes no immunoregulatory effects in primary human plasmacytoid dendritic cells. / Søndergaard, Jonas Nørskov; Vinner, Lasse; Pedersen, Susanne Brix.

    In: Molecular Immunology, Vol. 59, No. 2, 2014, p. 180-187.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  197. Published

    NetFCM: A Semi-Automated Web-Based Method for Flow Cytometry Data Analysis. / Frederiksen, Juliet Wairimu; Buggert, Marcus; Karlsson, Annika C.; Lund, Ole.

    In: Cytometry. Part A, Vol. 85, No. 11, 2014, p. 969-977.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  198. Published

    NetTepi: an integrated method for the prediction of T cell epitopes. / Trolle, Thomas; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 7-8, 2014, p. 449-456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  199. Published

    Neutrophil elastase-mediated increase in airway temperature during inflammation. / Schmidt, Annika; Belaaouaj, Azzaq; Bissinger, Rosi; Koller, Garrit; Malleret, Laurette; D'Orazio, Ciro; Facchinelli, Martino; Schulte-Hubbert, Bernhard; Molinaro, Antonio; Holst, Otto; Hammermann, Jutta; Schniederjans, Monika; Meyer, Keith C.; Pedersen, Søren Damkiær; Piacentini, Giorgio; Assael, Baroukh; Bruce, Kenneth; Häußler, Susanne; LiPuma, John J.; Seelig, Joachim; Worlitzsch, Dieter; Döring, Gerd.

    In: Journal of Cystic Fibrosis, Vol. 13, No. 6, 2014, p. 623-631.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  200. Published

    Nordic mcl2-3 trials: mirna-18b overexpression identifies a mantle cell lymphoma subgroup with poor survival and improves mipi-b prediction of prognosis. / Husby, Sofie; Ralfkiaer, U.; Garde, Christian; Ek, Sara; Kolstad, A.; Jerkeman, M.; Laurell, A.; Raty, R.; Ehinger, M.; Sundstrom, C.; Karjalainen-Lindsberg, M. L.; Delabie, J.; Clasen-Linde, E.; Brown, P. D. N.; Workman, Christopher; Geisler, C. H.; Gronbaek, K.

    In: Haematologica, Vol. 99, No. S1, 2014, p. 503-503.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  201. Published

    Novel and improved yeast cell factories for biosustainable processes. / Workman, Mhairi.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  202. Accepted

    NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods. / Jensen, Kasper; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: Nucleic Acids Research, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  203. Published

    Nutritional Systems Biology. / Jensen, Kasper; Panagiotou, Gianni (Supervisor); Kouskoumvekaki, Irene (Main supervisor).

    Technical University of Denmark, 2014. 139 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  204. Published
  205. Published

    Ochratoxin production and taxonomy of the yellow aspergilli (Aspergillus section Circumdati). / Visagie, C.M.; Varga, J.; Houbraken, J.; Meijer, M.; Kocsubé, S.; Yilmaz, N.; Fotedar, R.; Seifert, K.A.; Frisvad, Jens Christian; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  206. Published

    Osteoblastic response to pectin nanocoating on titanium surfaces. / Gurzawska, Katarzyna; Svava, Rikke; Yihua, Yu; Haugshøj, Kenneth Brian; Dirscherl, Kai; Levery, Steven B.; Byg, Inge; Damager, Iben; Weiss Nielsen , Martin ; Jørgensen, Bodil; Jørgensen, Niklas Rye; Gotfredsen, Klaus.

    In: Materials Science and Engineering A: Structural Materials: Properties, Microstructures and Processing, Vol. 43, 2014, p. 117-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  207. Published

    Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. / Perry, John R. B.; Day, Felix; Elks, Cathy E.; Sulem, Patrick; Thompson, Deborah J.; Ferreira, Teresa; He, Chunyan; Chasman, Daniel I.; Esko, Toenu; Thorleifsson, Gudmar; Albrecht, Eva; Ang, Wei Q.; Corre, Tanguy; Cousminer, Diana L.; Feenstra, Bjarke; Franceschini, Nora; Ganna, Andrea; Johnson, Andrew D.; Kjellqvist, Sanela; Lunetta, Kathryn L.; McMahon, George; Nolte, Ilja M.; Paternoster, Lavinia; Porcu, Eleonora; Smith, Albert V.; Stolk, Lisette; Teumer, Alexander; Tsernikova, Natalia; Tikkanen, Emmi; Ulivi, Sheila; Wagner, Erin K.; Amin, Najaf; Bierut, Laura J.; Byrne, Enda M.; Hottenga, Jouke-Jan; Koller, Daniel L.; Mangino, Massimo; Pers, Tune Hannes; Yerges-Armstrong, Laura M.; Zhao, Jing Hua; Andrulis, Irene L.; Anton-Culver, Hoda; Atsma, Femke; Bandinelli, Stefania; Beckmann, Matthias W.; Benitez, Javier; Blomqvist, Carl; Bojesen, Stig E.; Bolla, Manjeet K.; Bonanni, Bernardo; Brauch, Hiltrud; Brenner, Hermann; Buring, Julie E.; Chang-Claude, Jenny; Chanock, Stephen; Chen, Jinhui; Chenevix-Trench, Georgia; Collee, J. Margriet; Couch, Fergus J.; Couper, David; Coviello, Andrea D.; Cox, Angela; Czene, Kamila; D'adamo, Adamo Pio; Smith, George Davey; De Vivo, Immaculata; Demerath, Ellen W.; Dennis, Joe; Devilee, Peter; Dieffenbach, Aida K.; Dunning, Alison M.; Eiriksdottir, Gudny; Eriksson, Johan G.; Fasching, Peter A.; Ferrucci, Luigi; Flesch-Janys, Dieter; Flyger, Henrik; Foroud, Tatiana; Franke, Lude; Garcia, Melissa E.; Garcia-Closas, Montserrat; Geller, Frank; de Geus, Eco E. J.; Giles, Graham G.; Gudbjartsson, Daniel F.; Gudnason, Vilmundur; Guenel, Pascal; Guo, Suiqun; Hall, Per; Hamann, Ute; Haring, Robin; Hartman, Catharina A.; Heath, AndrewC; Hofman, Albert; Hooning, Maartje J.; Hopper, John L.; Hu, Frank B.; Hunter, David J.; Karasik, David; Kiel, Douglas P.; Knight, Julia A.; Kosma, Veli-Matti; Kutalik, Zoltan; Lai, Sandra; Lambrechts, Diether; Lindblom, Annika; Maegi, Reedik; Magnusson, Patrik K.; Mannermaa, Arto; Martin, Nicholas G.; Masson, Gisli; McArdle, Patrick F.; McArdle, Wendy L.; Melbye, Mads; Michailidou, Kyriaki; Mihailov, Evelin; Milani, Lili; Milne, Roger L.; Nevanlinna, Heli; Neven, Patrick; Nohr, Ellen A.; Oldehinkel, Albertine J.; Oostra, Ben A.; Palotie, Aarno; Peacock, Munro; Pedersen, Nancy L.; Peterlongo, Paolo; Peto, Julian; Pharoah, Paul D. P.; Postma, Dirkje S.; Pouta, Anneli; Pylkaes, Katri; Radice, Paolo; Ring, Susan; Rivadeneira, Fernando; Robino, Antonietta; Rose, Lynda M.; Rudolph, Anja; Salomaa, Veikko; Sanna, Serena; Schlessinger, David; Schmidt, Marjanka K.; Southey, Mellissa C.; Sovio, Ulla; Stampfer, Meir J.; Stoeckl, Doris; Storniolo, Anna M.; Timpson, Nicholas J.; Tyrer, Jonathan; Visser, Jenny A.; Vollenweider, Peter; Voelzke, Henry; Waeber, Gerard; Waldenberger, Melanie; Wallaschofski, Henri; Wang, Qin; Willemsen, Gonneke; Winqvist, Robert; Wolffenbuttel, Bruce H. R.; Wright, Margaret J.; Boomsma, Dorret I.; Econs, Michael J.; Khaw, Kay-Tee; Loos, Ruth J. F.; McCarthy, Mark I.; Montgomery, Grant W.; Rice, John P.; Streeten, Elizabeth A.; Thorsteinsdottir, Unnur; van Duijn, Cornelia M.; Alizadeh, Behrooz Z.; Bergmann, Sven; Boerwinkle, Eric; Boyd, Heather A.; Crisponi, Laura; Gasparini, Paolo; Gieger, Christian; Harris, Tamara B.; Ingelsson, Erik; Jaervelin, Marjo-Riitta; Kraft, Peter; Lawlor, Debbie; Metspalu, Andres; Pennell, Craig E.; Ridker, Paul M.; Snieder, Harold; Sorensen, Thorkild I. A.; Spector, Tim D.; Strachan, David P.; Uitterlinden, Andre G.; Wareham, Nicholas J.; Widen, Elisabeth; Zygmunt, Marek; Murray, Anna; Easton, Douglas F.; Stefansson, Kari; Murabito, Joanne M.; Ong, Ken K.; Study, Australian Ovarian Canc; Network, GENICA; Study, kConFabt LifeLines Cohort; Consortium, InterAct; Consorti, Early Growth Genetics EGG.

    In: NATURE, Vol. 514, No. 7520, 2014, p. 92-97.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  208. Published
  209. Published

    Penicillium / Penicillia in food production. / Frisvad, Jens Christian.

    Encyclopedia af food microbiology. ed. / C.A. Batt; M.L. Tortorello. Vol. 3 Elsevier Academic Press Inc, 2014. p. 14-18.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  210. Published

    Phenotypic differentiation of species from Aspergillus section Flavi on neutral red desiccated coconut agar. / Atanda, O. O.; Adetunji, M. C.; Ezekiel, C. N.; Houbraken, J.; Frisvad, Jens Christian; Samson, R. A.

    In: World Mycotoxin Journal, Vol. 7, No. 3, 2014, p. 335-344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  211. Published

    Phylogeny, identification and nomenclature of the genus Aspergillus. / Samson, R.A.; Visagie, C.M.; Houbraken, J.; Hong, S. B.; Hubka, V.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Susca, A.; Tanney, J.B.; Varga, J.; Kocsubé, S.; Szigeti, G.; Yaguchi, T.; Frisvad, Jens Christian.

    In: Studies in Mycology, Vol. 78, 2014, p. 141-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  212. Published

    Polyamines are essential for virulence in Salmonella enterica serovar Gallinarum despite evolutionary decay of polyamine biosynthesis genes. / Schroll, Casper; Christensen, Jens P.; Christensen, Henrik; Pors, Susanne E.; Thorndahl, Lotte; Jensen, Peter Ruhdal; Olsen, John E.; Jelsbak, Lotte.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 144-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  213. Published

    Polyphasic taxonomy of the genus Talaromyces. / Yilmaz, N.; Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 175-341.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  214. Published
  215. Published

    Potential of volatile compounds produced by fungi to influence sensory quality of coffee beverage. / Iamanaka, B. T.; Teixeira, A. A.; Teixeira, A. R. R.; Vicente, E.; Frisvad, Jens Christian; Taniwaki, M. H.; Bragagnolo, N.

    In: Food Research International, Vol. 64, 2014, p. 166-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  216. Published

    Prediction of resistance development against drug combinations by collateral responses to component drugs.. / Munck, Christian; Gumpert, Heidi; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Science Translational Medicine, Vol. 6, No. 262, 262ra156 , 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  217. Published

    Predictors of neutrophilic airway inflammation in young smokers with asthma. / Westergaard, Christian Grabow; Munck, Christian; Helby, Jens; Porsbjerg, Celeste; Hansen, Lars Henrik; Backer, Vibeke.

    In: Journal of Asthma, Vol. 51, No. 4, 2014, p. 341-347.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  218. Published

    Pre‐natal undernutrition and post‐natal overnutrition are associated with permanent changes in hepatic metabolism markers and fatty acid composition in sheep. / Hou, L.; Hellgren, Lars; Kongsted, A. H.; Vaag, A.; Nielsen, M. O.

    In: Acta Physiologica (Print), Vol. 210, No. 2, 2014, p. 317-329.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  219. Published

    Probabilistic Determination of Native State Ensembles of Proteins. / Olsson, Simon; Vögeli, Beat Rolf; Cavalli, Andrea; Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten; Hamelryck, Thomas.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 8, 2014, p. 3484-3491.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  220. Published

    Probe design for expression arrays using OligoWiz. / Wernersson, Rasmus.

    DNA Microarrays for Biomedical Research: Methods and Protocols. ed. / Martin Dufva. Vol. 529 Humana Press, 2014. p. 23-36 (Methods in Molecular Biology, Vol. 529).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2009

  221. Published

    Processing of biowaste for sustainable products in developing countries. / Dantoft, Shruti Harnal; Hansen, Anders Cai Holm; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  222. Published

    Programmed cell death: The life ambition of the barley aleurone layer. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Dufva, Martin; Emnéus, Jenny; Finnie, Christine.

    2014. Abstract from 1st INPPO World Congress on Plant Proteomics, Hamburg, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  223. Published

    Protein network reconstruction of CHO cell secretory pathway. / Lund, Anne Mathilde; Kaas, Christian Schrøder; Kildegaard, Helene Faustrup; Kristensen, Claus; Andersen, Mikael Rørdam.

    2014. Poster session presented at CHOgenome workshop, Vienna, Austria.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  224. Published

    Protein network reconstruction of CHO cell secretory pathway. / Lund, Anne Mathilde; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2014. Poster session presented at 9. Danish Conference on Biotechnology and Molecular Biology, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  225. Published

    Proteome reference maps of the Lotus japonicus nodule and root. / Dam, Svend Secher; Dyrlund, Thomas F.; Ussatjuk, Anna; Jochimsen, Bjarne; Nielsen, Kasper; Goffard, Nicolas; Ventosa, Miguel; Lorentzen, Andrea; Gupta, Vikas; Andersen, Stig U. ; Enghild, Jan J.; Ronson, Clive W.; Roepstorff, Peter; Stougaard, Jens.

    In: Journal of Proteomics, Vol. 14, 2014, p. 230-240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  226. Published

    Proteomic analysis of cAMP-mediated signaling during differentiation of 3 T3-L1 preadipocytes. / Borkowski, Kamil; Wrzesinski, Krzysztow; Rogowska-Wrzesinska, Adelina; Audouze, Karine Marie Laure; Bakke, Jesse; Petersen, Rasmus Koefoed; Haj, Fawaz G.; Madsen, Lise; Kristiansen, Karsten.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 12, 2014, p. 2096-2107.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  227. Published

    Proteomic Analysis of probiotic Lactobacillus acidophilus NCFM response to oxidative stress. / Celebioglu, Hasan Ufuk; Calderini, Elia; Lahtinen, Sampo J.; Jacobsen, Susanne; Pessione, Enrica; Svensson, Birte.

    2014. Abstract from 2014 Annual Conference & Exhibition. Functional foods, nutraceuticals, natural health products and dietary supplements, Istanbul, Turkey.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  228. Published
  229. Published
  230. Published

    Reagent deposition for rapid multiplex pathogen identification in human blood culture samples. / Mogensen, Klaus Bo; Machado, Ana Manuel; Dufva, Martin.

    Proceedings of the Fourth International Workshop on Analytical Miniaturization and NANOtechnologies . 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  231. Published
  232. Published

    Recent insight in α-glucan metabolism in probiotic bacteria. / Møller, Marie Sofie; Goh, Yong Jun; Viborg, Alexander Holm; Andersen, Joakim Mark; Klaenhammer, Todd R.; Svensson, Birte; Abou Hachem, Maher .

    In: Biologia, Vol. 69, No. 6, 2014, p. 713-721.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  233. Published

    Redox activity monitoring in intact barley aleurone cells during gibberellic acid induced programmed cell death. / Zor, Kinga; Mark, Christina; Heiskanen, Arto; Dufva, Martin; Finnie, Christine ; Emnéus, Jenny.

    Proceedings of the 15th International Conference on Electroanalysis. 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  234. Published

    Reducing antibiotic use in marine larviculture by probiotics. / Gram, Lone; D'Alvise, Paul; Grotkjær, Torben; Bentzon-Tilia, Mikkel.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  235. Published

    Removal of the phage-shock protein PspB causes reduction of virulence in Salmonella enterica serovar Typhimurium independently of NRAMP1.. / Wallrodt, Inke; Jelsbak, Lotte; Thomsen, Line E.; Brix, Lena; Lemire, Sebastien; Gautier, Laurent; Nielsen, Dennis S.; Jovanovic, Goran; Buck, Martin; Olsen, John E.

    In: Journal of Medical Microbiology, Vol. 63, No. Pt 6, 2014, p. 788-795.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  236. Published
  237. Published

    RNA-protein interactions: an overview.. / Re, Angela; Joshi, Tejal; Kulberkyte, Eleonora; Morris, Quaid; Workman, Christopher.

    RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods: Springer Protocols. Vol. 1097 2014. p. 491-521 (Methods in Molecular Biology, Vol. 1097).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  238. Published

    Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling. / Tian, Pengfei; Jónsson, Sigurdur Æ.; Ferkinghoff-Borg, Jesper; Krivov, Sergei V.; Lindorff-Larsen, Kresten; Irbäck, Anders; Boomsma, Wouter.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 2, 2014, p. 543-553.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  239. Published

    Science communication in policy making : A qualitative research about the motivation of academic biotech scientists to participate in policy making in Europe. / Coumou, Hilde; van der Werf Kulichova, Z. ; Wehrmann, C.; Osseweijer, P.

    Proceedings of PCST 2014. 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  240. Published
  241. Published

    Secreted single‐stranded DNA is involved in the initial phase of biofilm formation by Neisseria gonorrhoeae. / Zweig, Maria; Schork, Sabine; Koerdt, Andrea; Siewering, Katja; Sternberg, Claus; Thormann, Kai; Albers, Sonja‐Verena; Molin, Søren; Does, Chris, van der.

    In: Environmental Microbiology, Vol. 16, No. 4, 2014, p. 1040-1052.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  242. Published

    Selectivity of the surface binding site (SBS) on barley starch synthase I. / Wilkens, Casper; Cuesta-Seijo, Jose A.; Palcic, Monica; Svensson, Birte.

    In: Biologia, Vol. 69, No. 9, 2014, p. 1118-1121.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  243. Published
  244. Published

    Sequence and comparative analysis of Leuconostoc dairy bacteriophages. / Kot, Witold; Hansen, Lars Henrik; Neve, Horst; Hammer, Karin; Jacobsen, Susanne; Pedersen, Per D.; Sørensen, Søren J.; Heller, Knut J.; Vogensen, Finn K.

    In: International Journal of Food Microbiology, Vol. 176, 2014, p. 29-37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  245. E-pub ahead of print
  246. Published

    Signal peptides and protein localization prediction. / Nielsen, Henrik.

    Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley and Sons, Ltd., 2014.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  247. Published

    Size of quorum sensing communities. / Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Molecular BioSystems, Vol. 10, No. 103, 2014, p. 103-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  248. E-pub ahead of print
  249. Published

    Solid‐Phase Synthesis and Biological Evaluation of N‐Dipeptido L‐Homoserine Lactones as Quorum Sensing Activators. / Hansen, Mette Reimert; Le Quement, Sebastian Thordal; Jakobsen, Tim Holm; Skovstrup, Søren; Taboureau, Olivier ; Tolker‐Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: ChemBioChem, Vol. 15, No. 3, 2014, p. 460-465.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  250. Published

    Solonamide B Inhibits Quorum Sensing and Reduces Staphylococcus aureus Mediated Killing of Human Neutrophils. / Nielsen, Anita; Månsson, Maria; Bojer, Martin S.; Gram, Lone; Larsen, Thomas Ostenfeld; Novick, Richard P.; Frees, Dorte; Frøkiær, Hanne; Ingmer, Hanne.

    In: P L o S One, Vol. 9, No. 1, e84992, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  251. Published

    Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms. / Kaas, Rolf Sommer; Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller; Lund, Ole.

    In: PLOS ONE, Vol. 9, No. 8, e104984, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  252. Published

    Stability of the intra- and extracellular toxins of Prymnesium parvum using a microalgal bioassay. / Blossom, Hannah Eva; Andersen, Nikolaj Gedsted; Rasmussen, Silas Anselm; Hansen, Per Juel.

    In: Harmful Algae, Vol. 32, 2014, p. 11-21.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  253. Published

    Staphylococcus aureus Alters Growth Activity, Autolysis, and Antibiotic Tolerance in a Human Host-Adapted Pseudomonas aeruginosa Lineage.. / Frydenlund Michelsen, Charlotte; Christensen, Anne-Mette; Bojer, Martin Saxtorph; Høiby, Niels; Ingmer, Hanne; Jelsbak, Lars.

    In: Journal of Bacteriology, Vol. 196, No. 22, 2014, p. 3903-3911.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  254. Published

    Starter Cultures: Uses in the Food Industry.. / Hansen, Egon Bech.

    Encyclopedia of Food Microbiology. Vol. 3 Elsevier Science, 2014. p. 529-534.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  255. Published
  256. Published

    Structure Revision of N-Mercapto-4-formylcarbostyril Produced by Pseudomonas fluorescens G308 to 2-(2-Hydroxyphenyl)thiazole-4-carbaldehyde [aeruginaldehyde]. / Guillemyn, Karel; Ballet, Steven; Ye, Lumeng; Cornelis, Pierre; Hammerich, Ole; Christophersen, Carsten.

    In: Natural Product Communications, Vol. 9, No. 6, 2014, p. 789-794.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  257. Published

    Studies on genetic diversity of bovine viral diarrhea viruses in Danish cattle herds. / Nagy, Abdou; Fahnøe, Ulrik; Rasmussen, Thomas Bruun; Uttenthal, Åse.

    In: Virus Genes, Vol. 48, No. 2, 2014, p. 376-380.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  258. Published

    Surfactins in Natto: The Surfactin Production Capacity of the Starter Strains and the Actual Surfactin Contents in the Products. / Juola, Mari; Kinnunen, Kristiina; Nielsen, Kristian Fog; von Wright, Atte.

    In: Journal of Food Protection, Vol. 77, No. 12, 2014, p. 2139-2143.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  259. Published

    Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial. / van Zanten, Gabriella Christina; Krych, Lukasz; Roytio, Henna; Forssten, Sofia; Lahtinen, Sampo J.; Abu Al-Soud, Waleed; Sørensen, Søren; Svensson, Birte; Jespersen, Lene; Jakobsen, Mogens Havsteen.

    In: F E M S Microbiology Ecology, Vol. 90, No. 1, 2014, p. 225-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  260. Published

    Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid. / Rabe, Patrick; Klapschinski, Tim A.; Brock, Nelson L.; Citron, Christian A.; D'Alvise, Paul; Gram, Lone; Dickschat, Jeroen S.

    In: Beilstein Journal of Organic Chemistry, Vol. 10, 2014, p. 1796-1801.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  261. Published

    Synthetic Plasmid Biology. / Bentzon-Tilia, Mikkel; Sørensen, Søren Johannes; Hansen, Lars Hestbjerg.

    Molecular Life Sciences: An Encyclopedic Reference. Springer, 2014.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  262. Published
  263. Published

    Synthetic Promoter Library for Modulation of Actinorhodin Production in Streptomyces coelicolor A3(2). / Sohoni, Sujata Vijay; Fazio, Alessandro; Workman, Christopher; Mijakovic, Ivan; Eliasson Lantz, Anna.

    In: PLOS ONE, Vol. 9, No. 6, e99701, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  264. Published

    Systematic Evaluation of the Prognostic Impact and Intratumour Heterogeneity of Clear Cell Renal Cell Carcinoma Biomarkers. / Gulati, Sakshi; Martinez, Pierre; Joshi, Tejal; Birkbak, Nicolai Juul; Santos, Claudio R.; Rowan, Andrew J.; Pickering, Lisa; Gore, Martin; Larkin, James; Szallasi, Zoltan Imre; Bates, Paul A.; Swanton, Charles; Gerlinger, Marco.

    In: European Urology, Vol. 66, No. 5, 2014, p. 936-948.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  265. E-pub ahead of print

    Tabhu: tools for antibody humanization.. / Olimpieri, Pier Paolo; Marcatili, Paolo; Tramontano, Anna.

    In: Bioinformatics, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  266. Published

    T-bet and Eomes Are Differentially Linked to the Exhausted Phenotype of CD8+T Cells in HIV Infection. / Buggert, Marcus; Tauriainen, Johanna; Yamamoto, Takuya; Frederiksen, Juliet Wairimu; Ivarsson, Martin A.; Michaelsson, Jakob; Lund, Ole; Hejdeman, Bo; Jansson, Marianne; Sonnerborg, Anders; Koup, Richard A.; Betts, Michael R.; Karlsson, Annika C.

    In: P L o S Pathogens, Vol. 10, No. 7, e1004251, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  267. Published

    Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients. / Jensen, Anders Boeck; Moseley, Pope; Oprea, Tudor; Ellesøe, Sabrina Gade; Eriksson, Robert; Schmock, Henriette; Jensen, Peter Bjødstrup; Jensen, Lars Juhl; Brunak, Søren.

    In: Nature Communications, Vol. 5, 4022, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  268. Published

    The comparison of thrombocytosis and platelet-lymphocyte ratio as potential prognostic markers in colorectal cancer. / Baranyai, Zsolt; Krzystanek, Marcin; Josa, Valeria; Dede, Kristof; Ágoston, E.; Szasz, A. Marcell; Sinko, Daniel; Szarvas, Viktor; Salamon, Ferenc; Eklund, Aron Charles; Szallasi, Zoltan Imre; Jakab, Ferenc.

    In: Thrombosis and Haemostasis, Vol. 111, No. 3, 2014, p. 483-490.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  269. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from The Power of Programming Conference, Munich, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  270. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from The 11th Biennial ISSFAL Congress 2014, Stockholm, Sweden.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  271. Published

    The efflux pump MlcE from the Penicillium solitum compactin biosynthetic gene cluster increases Saccharomyces cerevisiae resistance to natural statins. / Ley, Ana; Frandsen, Rasmus John Normand.

    2014. Abstract from Yeast Genetics Meeting, Seattle, Washington, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  272. Published

    The evolutionary appearance of non-cyanogenic hydroxynitrile glucosides in the Lotus genus is accompanied by the substrate specialization of paralogous beta-glucosidases resulting from a crucial amino acid substitution. / Lai, Daniela; Abou Hachem, Maher ; Robson, Fran; Olsen, Carl Erik; Wang, Trevor L.; Møller, Birger Lindberg; Takos, Adam M.; Rook, Fred.

    In: Plant Journal, Vol. 79, No. 2, 2014, p. 299-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  273. Published

    The genetic prehistory of the New World Arctic. / Raghavan, Maanasa; DeGiorgio, Michael; Albrechtsen, Anders; Moltke, Ida; Skoglund, Pontus; Korneliussen, Thorfinn S.; Grønnow, Bjarne; Appelt, Martin; Gulløv, Hans Christian; Friesen, T. Max; Fitzhugh, William; Malmström, Helena; Rasmussen, Simon; Olsen, Jesper; Melchior, Linea; Fuller, Benjamin T.; Fahrni, Simon M.; Stafford, Thomas; Grimes, Vaughan; Renouf, M. A. Priscilla; Cybulski, Jerome; Lynnerup, Niels; Lahr, Marta Mirazon; Britton, Kate; Knecht, Rick; Arneborg, Jette; Metspalu, Mait; Cornejo, Omar E.; Malaspinas, Anna-Sapfo; Wang, Yong; Rasmussen, Morten; Raghavan, Vibha; Hansen, Thomas V. O.; Khusnutdinova, Elza; Pierre, Tracey; Dneprovsky, Kirill; Andreasen, Claus; Lange, Hans; Hayes, M. Geoffrey; Coltrain, Joan; Spitsyn, Victor A.; Gotherstrom, Anders; Orlando, Ludovic; Kivisild, Toomas; Villems, Richard; Crawford, Michael H.; Nielsen, Finn C.; Dissing, Jørgen; Heinemeier, Jan; Meldgaard, Morten; Bustamante, Carlos; O'Rourke, Dennis H.; Jakobsson, Mattias; Gilbert, M. Thomas P.; Nielsen, Rasmus; Willerslev, Eske.

    In: Science, Vol. 345, No. 6200, 1255832, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  274. Published

    The genome of a Late Pleistocene human from a Clovis burial site in western Montana.. / Rasmussen, Morten; Anzick, Sarah L.; Waters, Michael R; Skoglund, Pontus; DeGiorgio, Michael; Stafford, Thomas W, Jr; Rasmussen, Simon; Moltke, Ida; Albrechtsen, Anders; Doyle, Shane M; Poznik, G David; Gudmundsdottir, Valborg; Yadav, Rachita; Malaspinas, Anna Sapfo; White, Samuel Stockton, 5th; Allentoft, Morten Erik; Cornejo, Omar E.; Tambets, Kristiina; Eriksson, Anders; Heintzman, Peter D.; Karmin, Monika; Korneliussen, Thorfinn Sand; Meltzer, David J.; Pierre, Tracey Lynn; Stenderup, Jesper; Saag, Lauri; Warmuth, Vera M; Lopes, Margarida C; Malhi, Ripan S.; Brunak, Søren; Sicheritz-Pontén, Thomas; Barnes, Ian; Collins, Matthew; Orlando, Ludovic Antoine Alexandre; Balloux, Francois; Manica, Andrea; Gupta, Ramneek; Metspalu, Mait; Bustamante, Carlos D; Jakobsson, Mattias; Nielsen, Rasmus; Willerslev, Eske.

    In: Nature, Vol. 506, No. 7487, 2014, p. 225-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  275. Published

    The Genome of the Generalist Plant Pathogen Fusarium avenaceum Is Enriched with Genes Involved in Redox, Signaling and Secondary Metabolism.. / Lysøe, Erik; Harris, Linda J.; Walkowiak, Sean; Subramaniam, Rajagopal; Divon, Hege H.; Riiser, Even S.; Llorens, Carlos; Gabaldón, Toni; Kistler, H. Corby; Jonkers, Wilfried; Kolseth, Anna-Karin; Nielsen, Kristian Fog; Thrane, Ulf; Frandsen, Rasmus John Normand.

    In: P L o S One, Vol. 9, No. 11, e112703, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  276. Published

    The Good, the Bad and the Deadly : Characterisation of bacteria through DNA analysis. / Cosentino, Salvatore; Larsen, Mette Voldby (Main supervisor); Lund, Ole (Supervisor).

    Technical University of Denmark, 2014. 89 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  277. Published
  278. Published
  279. Published

    The role of ClpP, RpoS and CsrA in growth and filament formation of Salmonella enterica serovar Typhimurium at low temperature. / Knudsen, Gitte Maegaard; Nielsen, Maj-Britt; Thomsen, Line Elnif; Aabo, Søren; Rychlik, Ivan; Olsen, John Elmerdahl.

    In: B M C Microbiology, Vol. 14, No. 1, 208, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  280. Published

    The Role of Extracellular Matrix Quality in Pulmonary Fibrosis. / Kristensen, Jacob Hull; Karsdal, Morten Asser; Genovese, Federica; Johnson, Simon; Svensson, Birte; Jacobsen, Susanne; Hägglund, Per; Leeming, Diana Julie.

    In: Respiration (English Edition), Vol. 88, No. 6, 2014, p. 487-499.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  281. Published

    The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313. / Herrero-Fresno, Ana; Wallrodt, Inke; Leekitcharoenphon, Pimlapas; Olsen, John Elmerdahl; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: PLOS ONE, Vol. 9, No. 1, e84566, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  282. Published

    Tolerance of Whole-Genome Doubling Propagates Chromosomal Instability and Accelerates Cancer Genome Evolution. / Dewhurst, Sally M.; McGranahan, Nicholas; Burrell, Rebecca A.; Rowan, Andrew J.; Grönroos, Eva; Endesfelder, David; Joshi, Tejal; Mouradov, Dmitri; Gibbs, Peter; Ward, Robyn L.; Hawkins, Nicholas J.; Szallasi, Zoltan Imre; Sieber, Oliver M.; Swanton, Charles.

    In: Cancer Discovery, Vol. 4, No. 2, 2014, p. 175-185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  283. Published

    Tolerance of yeast biofilm cells towards systemic antifungals. / Bojsen, Rasmus Kenneth; Folkesson, Sven Anders (Main supervisor); Regenberg, Birgitte (Supervisor).

    Technical University of Denmark, 2014. 111 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  284. Published

    Toward genome-scale models of the Chinese hamster ovary cells: incentives, status and perspectives. / Kaas, Christian Schrøder; Fan, Yuzhou; Weilguny, Dietmar; Kristensen, Claus; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    In: Pharmaceutical Bioprocessing, Vol. 2, No. 5, 2014, p. 437-448.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  285. Published
  286. Published
  287. Published

    Tracking Genomic Cancer Evolution for Precision Medicine: The Lung TRACERx Study. / Jamal-Hanjani, Mariam; Hackshaw, Alan; Ngai, Yenting; Shaw, Jacqueline; Dive, Caroline; Quezada, Sergio; Middleton, Gary; de Bruin, Elza; Le Quesne, John; Shafi, Seema; Falzon, Mary; Horswell, Stuart; Blackhall, Fiona; Khan, Iftekhar; Janes, Sam; Nicolson, Marianne; Lawrence, David; Forster, Martin; Fennell, Dean; Lee, Siow-Ming; Lester, Jason; Kerr, Keith; Muller, Salli; Iles, Natasha; Smith, Sean; Murugaesu, Nirupa; Mitter, Richard; Salm, Max; Stuart, Aengus; Matthews, Nik; Adams, Haydn; Ahmad, Tanya; Attanoos, Richard; Bennett, Jonathan; Birkbak, Nicolai Juul; Booton, Richard; Brady, Ged; Buchan, Keith; Capitano, Arrigo; Chetty, Mahendran; Cobbold, Mark; Crosbie, Philip; Davies, Helen; Denison, Alan; Djearman, Madhav; Goldman, Jacki; Haswell, Tom; Joseph, Leena; Kornaszewska, Malgorzata; Krebs, Matthew; Langman, Gerald; MacKenzie, Mairead; Millar, Joy; Morgan, Bruno; Naidu, Babu; Nonaka, Daisuke; Peggs, Karl; Pritchard, Catrin; Remmen, Hardy; Rowan, Andrew; Shah, Rajesh; Smith, Elaine; Summers, Yvonne; Taylor, Magali; Veeriah, Selvaraju; Waller, David; Wilcox, Ben; Wilcox, Maggie; Woolhouse, Ian; McGranahan, Nicholas; Swanton, Charles.

    In: P L o S Biology, Vol. 12, No. 7, e1001906, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  288. Published

    Transforming Lactococcus lactis into a microbial cell factory. / Petersen, Kia Vest; Solem, Christian (Supervisor); Martinussen, Jan (Supervisor); Jensen, Peter Ruhdal (Supervisor).

    Department of Systems Biology, DTU, 2014. 124 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  289. Published
  290. Published

    Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. / Malaspinas, Anna-Sapfo; Lao, Oscar; Schroeder, Hannes; Rasmussen, Morten; Raghavan, Maanasa; Moltke, Ida; Campos, Paula F.; Sagredo, Francisca Santana; Rasmussen, Simon; Gonçalves, Vanessa F.; Albrechtsen, Anders; Allentoft, Morten E.; Stenderup, Jesper; Moreno-Mayar, J. Victor; Brunak, Søren; Sicheritz-Pontén, Thomas; Orlando, Ludovic; Nielsen, Rasmus; Heinemeier, Jan; Olsen, Jesper; Willerslev, Eske.

    In: Current Biology, Vol. 24, No. 21, 2014, p. R1035-R1037.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  291. Published

    Uncovering the Peptide-Binding Specificities of HLA-C: A General Strategy To Determine the Specificity of Any MHC Class I Molecule. / Rasmussen, Michael; Harndahl, Mikkel; Stryhn, Anette; Boucherma, Rachid; Nielsen, Lise Lotte; Lemonnier, François A.; Nielsen, Morten; Buus, Søren.

    In: Journal of Immunology, Vol. 193, No. 10, 2014, p. 4790-4802.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  292. Published

    Unraveling cryptic chemistry in black aspergilli. / Petersen, Lene Maj; Frisvad, Jens Christian; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 80, No. 10, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  293. Published

    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. / Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.; Metspalu, Mait; Albrechtsen, Anders; Moltke, Ida; Rasmussen, Simon; Stafford jr., Thomas; Orlando, Ludovic Antoine Alexandre; Metspalu, Ene; Karmin, Monika; Tambets, Kristiina; Rootsi, Siiri; Mägi, Reedik; Campos, Paula; Balanovska, Elena; Balanovsky, Oleg; Khusnutdinova, Elza; Litvinov, Sergey; Osipova, Ludmila P; Fedorova, Sardana A; Voevoda, Mikhail I; Degiorgio, Michael; Sicheritz-Pontén, Thomas; Brunak, Søren; Demeshchenko, Svetlana; Kivisild, Toomas; Villems, Richard; Nielsen, Rasmus; Jakobsson, Mattias; Willerslev, Eske.

    In: Nature, Vol. 505, No. 7481, 2014, p. 87–91.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  294. Published

    Use of "one-pot, mix-and-read" peptide-MHC class I tetramers and predictive algorithms to improve detection of cytotoxic T lymphocyte responses in cattle. / Svitek, Nicholas; Hansen, Andreas Martin; Steinaa, Lucilla; Saya, Rosemary; Awino, Elias; Nielsen, Morten; Buus, Søren; Nene, Vishvanath.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  295. Published

    Vibrio chromosome-specific families. / Lukjancenko, Oksana; Ussery, David.

    In: Frontiers in Microbiology, Vol. 5, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  296. Published

    Vibriophages and Their Interactions with the Fish Pathogen Vibrio anguillarum.. / Tan, Demeng; Gram, Lone; Middelboe, Mathias.

    In: Applied and Environmental Microbiology, Vol. 80, No. 10, 2014, p. 3128-3140.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  297. E-pub ahead of print

    Whey-reduced weight gain is associated with a temporary growth reduction in young mice fed a high-fat diet. / Tranberg, Britt; Madsen, Andreas N.; Hansen, Axel K.; Hellgren, Lars.

    In: Journal of Nutritional Biochemistry, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  298. Published

    Whole-genome analyses resolve early branches in the tree of life of modern birds. / Sicheritz-Pontén, Thomas; Li, Cai; Li, Bo; Munch, Kasper ; Schierup, Mikkel H; Bertelsen, Mads Frost ; Fjeldsa, Jon ; Jønsson, Knud Andreas; Wang, Jun; Willerslev, Eske.

    In: Science, Vol. 346, No. 6215, 2014, p. 1320-1331.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  299. Published

    Whole Genome Epidemiological Typing of Salmonella. / Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller (Main supervisor); Lund, Ole (Supervisor); Ussery, David (Supervisor).

    National Food Institute, 2014. 112 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  300. Published
  301. Published

    α-Amylase: an enzyme specificity found in various families of glycoside hydrolases. / Janeček, Štefan; Svensson, Birte; MacGregor, E. Ann.

    In: Cellular and Molecular Life Sciences, Vol. 71, No. 7, 2014, p. 1149-1170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  302. 2013
  303. Published

    31P gain of chromosomal region 15q26 cause increased expression of blm and fanci, and is associated with sensitivity to platinum chemotherapy in triple negative breast cancer. / Birkbak, Nicolai Juul; Li, Y.; Bowman-Collin, C.; Iglehart, J.D.; Silver, D.; Wang, Z.C.; Szallasi, Zoltan Imre; Richardson, A.

    In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  304. Published
  305. Published

    A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night. / Ruzanski, Christian; Smirnova, Julia; Rejzek, Martin; Cockburn, Darrell; Pedersen, Henriette L.; Pike, Marilyn; Willats, William George Tycho; Svensson, Birte; Steup, Martin; Ebenhöh, Oliver; Smith, Alison M.; Field, Robert A.

    In: Journal of Biological Chemistry, Vol. 288, No. 40, 2013, p. 2028581-28598.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  306. Published
  307. Published

    A computational approach to chemical etiologies of diabetes.. / Audouze, Karine Marie Laure; Brunak, Søren; Grandjean, Philippe.

    In: Scientific Reports, Vol. 3, 2013, p. 2712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  308. Published
  309. Published

    Adaptive Evolution of Escherichia coli to an α-Peptide/β-Peptoid Peptidomimetic Induces Stable Resistance.. / Hein-Kristensen, Line; Franzyk, Henrik; Holch, Anne; Gram, Lone.

    In: PloS one., Vol. 8, No. 9, e73620, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  310. Published

    Adhesion and Proteome Analyses of Lactobacillus acidophilus NCFM grown with the potential Prebiotic Raffinose. / Celebioglu, Hasan Ufuk; Hansen, Morten Ejby; Majumder, Avishek; Dabene, Valentina; Legaard, Camilla Bergholz; Havmøller, Ingeborg Lund; Thorsen, K.; Lahtinen, Sampo J.; Abou Hachem, Maher ; Jacobsen, Susanne; Svensson, Birte.

    Proceedings of the International Scientific Conference on Probiotics and Prebiotics. 2013.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  311. Published

    Adhesion of human and animal escherichia coli strains in association with their virulence-associated genes and phylogenetic origins. / Fr̈mmel, Ulrike; R̈diger, Stefan; B̈hm, Alexander; Nitschke, J̈rg; Groß, Julia; Roggenbuck, Dirk; Schr̈der, Christian; Schierack, Peter; Lehmann, Werner; Roggenbuck, Dirk; Zinke, Olaf; Ansorge, Hermann; Vogel, Steffen; Klemm, Per; Wex, Thomas; Wieler, Lothar H.

    In: Applied and Environmental Microbiology, Vol. 79, No. 19, 2013, p. 5814-5829.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  312. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, C.P.; Berentzen, T.L.; Østergaard, J.N.; Dahm, C.C.; Hellgren, Lars; Schmidt, E.B.; Tjønneland, A.; Sørensen, T.I.A.; Overvad, K.; Jakobsen, M.U.

    2013. Abstract from European Congress on Obesity 2013, Liverpool, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  313. Published
  314. Published

    Alpha-amylase - an enzyme present in various sequence-based glycoside hydrolase families. / Janecek, S.; Svensson, Birte; MacGregor, E. Ann.

    In: F E B S Journal, Vol. 280, 2013, p. 546-546.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  315. Published

    A Mild Method for Regioselective Labeling of Aromatics with Radioactive Iodine. / Rønnest, Mads Holger; Nissen, Felix; Pedersen, Palle Jacob; Larsen, Thomas Ostenfeld; Mier, Walter; Clausen, Mads Hartvig.

    In: European Journal of Organic Chemistry, Vol. 2013, No. 19, 2013, p. 3970-3973.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  316. Published

    Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes.. / Bohlin, Jon; Brynildsrud, Ola Brønstad; Vesth, Tammi Camilla; Skjerve, Eystein; Ussery, David.

    In: PLoS ONE, Vol. 8, No. 7, e69878, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  317. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, M. Thomas P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    The nature of parasitism: Joint Spring Symposium 2013, Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. 2013. p. 8.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  318. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next-generation-sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Thomas, M.; Gilbert, P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    In: Tropical Medicine & International Health, Vol. 18, No. Supplement 1 , 2013, p. 67-67.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  319. Published

    An exoproteome approach to monitor safety of a cheese-isolated Lactococcus lactis. / Genovese, Federica; Coïsson, Jean Daniel; Majumder, Avishek; Pessione, Alessandro; Svensson, Birte; Jacobsen, Susanne; Pessione, Enrica.

    In: Food Research International, Vol. 54, No. 1, 2013, p. 1072-1079.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  320. Published

    A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk. / Blair, David R.; Lyttle, Christopher S.; Mortensen, Jonathan M.; Bearden, Charles F.; Jensen, Anders Boeck; Khiabanian, Hossein; Melamed, Rachel; Rabadan, Raul; Bernstam, Elmer V.; Brunak, Søren; Jensen, Lars Juhl; Nicolae, Dan; Shah, Nigam H.; Grossman, Robert L.; Cox, Nancy J.; White, Kevin P.; Rzhetsky, Andrey.

    In: Cell, Vol. 155, No. 1, 2013, p. 70-80.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  321. Published

    A Novel Domain Cassette Identifies Plasmodium falciparum PfEMP1 Proteins Binding ICAM-1 and Is a Target of Cross-Reactive, Adhesion-Inhibitory Antibodies. / Bengtsson, Anja; Jørgensen, Louise; Rask, Thomas Salhøj; Olsen, Rebecca W.; Andersen, Marianne A.; Turner, Louise; Theander, Thor G.; Hviid, Lars; Higgins, Matthew K.; Craig, Alister; Brown, Alan; Jensen, Anja T. R.

    In: Journal of Immunology, Vol. 190, No. 1, 2013, p. 240-249.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  322. Published
  323. Published
  324. Published

    Application of proteomics for improving crop protection/artificial regulation. / Komatsu, Setsuko; Mock, Hans-Peter; Yang, Pingfang; Svensson, Birte.

    In: Frontiers in Plant Science, Vol. 4, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  325. Published

    Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.

    Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  326. Published
  327. Published

    Arabidopsis thaliana AMY3 Is a Unique Redox-regulated Chloroplastic α-Amylase. / Seung, David; Thalmann, Matthias; Sparla, Francesca; Abou Hachem, Maher ; Lee, Sang Kyu; Issakidis-Bourguet, Emmanuelle; Svensson, Birte; Zeeman, Samuel C.; Santelia, Diana.

    In: Journal of Biological Chemistry, Vol. 288, No. 47, 2013, p. 33620-33633.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  328. Published
  329. Published

    A snapshot into the metabolism of isomalto-oligosaccharides in probiotic bacteria. / Abou Hachem, Maher ; Møller, Marie Sofie; Andersen, Joakim Mark; Fredslund, Folmer; Majumder, Avishek; Nakai, Hiroyuki; Leggio, Leila lo; Goh, Yong-Jun ; Barrangou, R.; Klaenhammer, Todd R.; Svensson, Birte.

    In: Journal of Applied Glycoscience, Vol. 60, No. 2, 2013, p. 95-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  330. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.. / Jensen, Michael Krogh; Lindemose, Søren; De Masi, Federico; Reimer, Julia J; Nielsen, Michael; Perera, Venura; Workman, Christopher; Turck, Franziska; Grant, Murray R; Mundy, John; Petersen, Morten; Skriver, Karen.

    In: FEBS Open Bio, Vol. 3, 2013, p. 321-327.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  331. Published

    Ataxia, Dementia, and Hypogonadotropism Caused by Disordered Ubiquitination. / Margolin, David H.; Kousi, Maria; Chan, Yee-Ming; Lim, Elaine T.; Schmahmann, Jeremy D.; Hadjivassiliou, Marios; Hall, Janet E.; Adam, Ibrahim; Dwyer, Andrew; Plummer, Lacey; Aldrin, Stephanie V.; O'Rourke, Julia; Kirby, Andrew; Hansen, Kasper Lage; Milunsky, Aubrey; Milunsky, Jeff M.; Chan, Jennifer; Hedley-Whyte, E. Tessa; Daly, Mark J.; Katsanis, Nicholas; Seminara, Stephanie B.

    In: New England Journal of Medicine, Vol. 368, No. 21, 2013, p. 1992-2003.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  332. Published

    A Unified Model of the GABA(A) Receptor Comprising Agonist and Benzodiazepine Binding Sites. / Kongsbak, Kristine Grønning; Bergmann, Rikke; Sørensen, Pernille Louise; Sander, Tommy; Balle, Thomas.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e52323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  333. Published

    A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study. / Eijsden, Rudy G. E. van; Stassen, Catherine; Daenen, Luk; Mulders, Sebastiaan E. Van; Bapat, Prashant Madhusudhan; Siewers, Verena; Goossens, Katty V. Y.; Nielsen, Jens; Delvaux, Freddy R.; Hummelen, Paul Van; Devreese, Bart; Willaert, Ronnie G.

    In: Biotechnology Letters, Vol. 35, No. 6, 2013, p. 891-900.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  334. Published

    A validated system for ligation-free USER™ -based assembly of expression vectors for mammalian cell engineering. / Lund, Anne Mathilde; Kildegaard, Helene Faustrup; Hansen, Bjarne Gram; Holm, Dorte Koefoed; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    2013. Poster session presented at 23rd ESACT meeting, Lille, France.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  335. Published

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food. / Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.; Berner, T. S.; Nielsen, Kristian Fog; Adimpong, David Bichala; Diawara, B.; Ouedraogo, G.A.; Jakobsen, M.; Thorsen, L.

    In: Journal of Applied Microbiology, Vol. 115, No. 1, 2013, p. 133-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  336. Published

    Bacterial natural transformation by highly fragmented and damaged DNA.. / Overballe-Petersen, Søren; Harms, Klaus; Orlando, Ludovic Antoine Alexandre; Mayar, J. Victor Moreno; Rasmussen, Simon; Dahl, Tais Wittchen; Rosing, Minik Thorleif; Poole, Anthony M; Sicheritz-Pontén, Thomas; Brunak, Søren; Inselmann, Sabrina; de Vries, Johann; Wackernagel, Wilfried; Pybus, Oliver G; Nielsen, Rasmus; Johnsen, Pål Jarle; Nielsen, Kaare Magne; Willerslev, Eske.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 49, 2013, p. 19860-19865.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  337. Published

    Biasogram: visualization of confounding technical bias in gene expression data.. / Krzystanek, Marcin; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e61872.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  338. Published

    Binding of the N-Terminal Domain of the Lactococcal Bacteriophage TP901-1 CI Repressor to Its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. / Frandsen, Kristian Erik Høpfner; Rasmussen, Kim K.; Jensen, Malene Ringkjøbing; Hammer, Karin; Pedersen, Margit; Poulsen, Jens-Christian Navarro; Arleth, Lise; Lo Leggio, Leila.

    In: Biochemistry, Vol. 52, No. 39, 2013, p. 6892-6904.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  339. Published
  340. Published
  341. Published

    Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.

    Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  342. Published

    Bioprospecting and Functional Analysis of Neglected Environments. / Vogt, Josef Korbinian; Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2013. 150 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  343. Published

    Biotribological properties of bovine submaxillary mucin (BSM) at the hydrophobic interface. / Madsen, Jan Busk; Nikogeorgos, Nikolaos; Abou Hachem, Maher ; Svensson, Birte; Lee, Seunghwan.

    In: European Cells & Materials, Vol. 26, No. Suppl. 6, 2013, p. 111.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  344. Published

    BlockLogo: Visualization of peptide and sequence motif conservation. / Olsen, Lars Rønn; Kudahl, Ulrich Johan; Simon, Christian; Sun, Jing; Schönbach, Christian; Reinherz, Ellis L.; Zhang, Guang Lan; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 400-401, 2013, p. 37-44.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  345. Published

    Cancer signaling networks and their implications for personalized medicine. / Creixell, Pau; Linding, Rune (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 113 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  346. Published

    Cell mass and cell cycle dynamics of an asynchronous budding yeast population : Experimental observations, flow cytometry data analysis, and multi-scale modeling. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Sørensen, Søren J.; Jensen, Anker Degn; Nopens, Ingmar; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology and Bioengineering (Print), Vol. 110, No. 3, 2013, p. 812-826.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  347. Published

    Chaetoglobosin A preferentially induces apoptosis in chronic lymphocytic leukemia cells by targeting the cytoskeleton.. / Knudsen, Peter Boldsen; Hanna, B.; Ohl, S.; Sellner, L.; Zenz, T.; Döhner, H.; Stilgenbauer, S; Larsen, Thomas Ostenfeld; Lichter, P.; Seiffert, M.

    In: Leukemia, Vol. 28, No. 6, 2013, p. 1289-1298.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  348. Published

    Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production. / Jensen, Birgit; Knudsen, Inge M. B.; Andersen, Birgitte; Nielsen, Kristian Fog; Thrane, Ulf; Jensen, Dan Funck; Larsen, John.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 313-322.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  349. Published

    Characterization of Pectin Nanocoatings at Polystyrene and Titanium Surfaces. / Gurzawska, Katarzyna; Dirscherl, Kai; Yihua, Yu; Byg, Inge; Jørgensen, Bodil; Svava, Rikke; Weiss Nielsen , Martin ; Jørgensen, Niklas R. ; Gotfredsen, Klaus.

    In: Journal of Surface Engineered Materials and Advanced Technology, Vol. 3, No. 4A, 2013, p. 20-28.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  350. Published
  351. Published

    ChemProt: A disease chemical biology database. / Taboureau, Olivier ; Oprea, Tudor I.

    Computational Chemogenomics. Pan Stanford Publishing, 2013.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  352. Published

    ClpP deletion causes attenuation of Salmonella Typhimurium virulence through mis-regulation of RpoS and indirect control of CsrA and the SPI genes. / Knudsen, Gitte Maegaard; Olsen, John E.; Aabo, Søren; Barrow, Paul; Rychlik, Ivan; Thomsen, Line E.

    In: Microbiology, Vol. 159, No. Part 7, 2013, p. 1497-1509.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  353. Published

    CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.. / Vesth, Tammi Camilla; Lagesen, Karin; Acar, Öncel; Ussery, David.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e60120.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  354. Published

    Colorectal cancer cell lines made resistant to SN38-and Oxaliplatin: Roles of altered ion transporter function in resistance?. / Sandra, Christensen; Jensen, Niels Frank; Stoeckel, Johanne Danmark; Belling, Kirstine C.; Romer, Maria Unni; Gupta, Ramneek; Brunner, Nils; Pedersen, Stine Helene Falsig; Stenvang, Jan.

    In: F A S E B Journal, Vol. 27, lb452, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  355. Published

    Comparative fermentation of insoluble carbohydrates in an in vitro human feces model spiked with Lactobacillus acidophilus NCFM. / Knudsen, Anne; van Zanten, Gabriella C.; Jensen, Susanne L.; Forssten, Sofia D.; Saarinen, Markku; Lahtinen, Sampo J.; Bandsholm, Ole; Svensson, Birte; Jespersen, Lene; Blennow, Andreas.

    In: Starch, Vol. 65, No. 3‐4, 2013, p. 346-353.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  356. Published

    Comparative Genomic Analysis of Rapid Evolution of an Extreme-Drug-Resistant Acinetobacter baumannii Clone. / Tan, Sean Yang-Yi; Chua, Song Lin; Liu, Yang; Høiby, Niels; Andersen, Leif Percival; Givskov, Michael Christian; Song, Zhijun; Yang, Liang.

    In: Genome Biology and Evolution, Vol. 5, No. 5, 2013, p. 807-818.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  357. Published
  358. Published

    Comparison of two Next Generation sequencing platforms for full genome sequencing of Classical Swine Fever Virus. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    ABSTRACTS: 7th Annual Meeting EPIZONE. 2013. p. 124 D 2.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  359. Published

    Comparison of typing by whole genome sequencing (WGS) and pulsed field gel electrophoresis (PFGE) of isolates from a hospital outbreak with a CTX-M-15 producing Klebsiella pneumoniae. / Hansen, D. S.; Kaas, Rolf Sommer; Nielsen, E. M.; Aarestrup, Frank Møller; Hasman, Henrik.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 154.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  360. Published

    Complete genes may pass from food to human blood. / Spisák, Sándor; Solymosi, Norbert; Ittzés, Péter; Bodor, András; Kondor, Dániel; Vattay, Gábor; Barták, Barbara K; Sipos, Ferenc; Galamb, Orsolya; Tulassay, Zsolt; Szállási, Zoltán; Rasmussen, Simon; Sicheritz-Ponten, Thomas; Brunak, Søren; Molnár, Béla; Csabai, István.

    In: PloS one., Vol. 8, No. 7, e69805, 2013, p. 11.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  361. Published

    Complete Genome Sequence of Pediococcus pentosaceus Strain SL4. / Dantoft, Shruti Harnal; Bielak, Eliza Maria; Seo, Jae-Gu; Chung, Myung-Jun; Jensen, Peter Ruhdal.

    In: Genome Announcements, Vol. 1, No. 6, e01106-13, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  362. Published

    Computational approaches to identify functional genetic variants in cancer genomes.. / Gonzalez-Perez, Abel; Mustonen, Ville; Reva, Boris; Ritchie, Graham R S; Creixell, Pau; Karchin, Rachel; Vazquez, Miguel; Fink, J Lynn; Kassahn, Karin S; Pearson, John V; Bader, Gary D; Boutros, Paul C; Muthuswamy, Lakshmi; Ouellette, B F Francis; Reimand, Jüri; Linding, Rune; Shibata, Tatsuhiro; Valencia, Alfonso; Butler, Adam; Dronov, Serge; Flicek, Paul; Shannon, Nick B; Carter, Hannah; Ding, Li; Sander, Chris; Stuart, Josh M; Stein, Lincoln D; Lopez-Bigas, Nuria.

    In: Nature Methods, Vol. 10, No. 8, 2013, p. 723-729.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  363. Published

    Computational optimisation of targeted DNA sequencing for cancer detection.. / Martinez, Pierre; McGranahan, Nicholas; Birkbak, Nicolai Juul; Gerlinger, Marco; Swanton, Charles.

    In: Scientific Reports, Vol. 3, 2013, p. 3309.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  364. Published

    Concordance of gene expression in human protein complexes reveals tissue specificity and pathology. / Börnigen, Daniela; Pers, Tune Hannes; Thorrez, Lieven; Huttenhower, Curtis; Moreau, Yves; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 41, No. 18, e171, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  365. Published

    Content and distribution of phytanic acid diastereomers in organic milk as affected by feed composition. / Che, Brita Ngum; Kristensen, Troels; Nebel, Caroline; Dalsgaard, Trine; Hellgren, Lars; Young, Jette Feveile; Larsen, Mette K.

    In: Journal of Agricultural and Food Chemistry, Vol. 61, No. 1, 2013, p. 225-230.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  366. Published

    Co-production of surfactin and a novel bacteriocin by Bacillus subtilis subsp. subtilis H4 isolated from bikalga, an African alkaline Hibiscus sabdariffa seed fermented condiment.. / Compaore, C. S.; Nielsen, Dennis S.; Ouoba, L. I. I.; Berner, Torben Sune; Nielsen, Kristian Fog; Sawadogo-Lingani, H.; Diawara, B.; Ouedraogo, G. A.; Jakobsen, Mogens; Thorsen, Line.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 297-307.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  367. Published

    Covalent Immobilization of β-Glucosidase on Magnetic Particles for Lignocellulose Hydrolysis. / Alftrén, Johan; Hobley, Timothy John.

    In: Applied Biochemistry and Biotechnology, Vol. 169, No. 7, 2013, p. 2076-2087.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  368. Published

    Cytotoxicity and mycotoxin production of shellfish‐derived Penicillium spp., a risk for shellfish consumers. / Geiger, M.; Guitton, Y.; Vansteelandt, M.; Kerzaon, I.; Blanchet, E.; Robiou du Pont, T.; Frisvad, Jens Christian; Hess, P.; Pouchus, Y.F.; Grovel, O.

    In: Letters in Applied Microbiology, Vol. 57, No. 5, 2013, p. 385-392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  369. Published
  370. Published

    Deconvoluting complex tissues for expression quantitative trait locus-based analyses. / Seo, Ji-Heui; Li, Qiyuan; Fatima, Aquila; Eklund, Aron Charles; Szallasi, Zoltan Imre; Polyak, Kornelia; Richardson, Andrea L.; Freedman, Matthew L.

    In: Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol. 368, No. 1620, 2013, p. 20120363-20120363.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  371. Published

    Deep phenotyping of the unselected COPSAC2010 birth cohort study. / Bisgaard, Hans Flinker; Vissing, Nadja Hawwa; Carson, C. G.; Bischoff, Anne Louise; Følsgaard, Nilofar Vahman; Kreiner‐Møller, E.; Chawes, Bo Lund Krogsgaard; Stokholm, J.; Pedersen, L.; Bjarnadóttir, E.; Thysen, Anna Hammerich; Nilsson, E.; Mortensen, L. J.; Olsen, S. F.; Schjørring, S.; Krogfelt, Karen Angeliki; Lauritzen, L.; Pedersen, Susanne Brix; Bønnelykke, K.

    In: Clinical & Experimental Allergy, Vol. 43, No. 12, 2013, p. 1384-1394.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  372. Published

    Détection et quantification de Morganella psychrotolerans dans des poissons par qPCR.. / Podeur, G.; Leroi, F.; Prevost, H.; Pilet, M. F.; Dalgaard, Paw; Emborg, J.; Martinussen, Jan; Hansen, L.

    2013. Abstract from 9e Congrès Nationale de la Société Francaise de Microbiologie, Lille, France.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  373. Published

    Detection of serological biomarkers by proximity extension assay for detection of colorectal neoplasias in symptomatic individuals. / Buch Thorsen, Stine ; Lundberg, Martin ; Villablanca, Andrea ; Christensen, Sarah Louise T.; Belling, Kirstine C.; Sander Nielsen, Birgitte ; Knowles, Mick ; Gee, Nick; Nielsen, Hans Jørgen ; Brünner, Nils; Jarle Christensen, Ib ; Fredriksson, Simon ; Stenvang, Jan ; Assarsson, Erika.

    In: Journal of Translational Medicine, Vol. 11, 253, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  374. Published
  375. Published
  376. Published

    Discovering Unique, Low-Energy Transition States Using Evolutionary Molecular Memetic Computing. / Ellabaan, Mostafa M Hashim; Ong, Y.S.; Handoko, S.D.; Kwoh, C.K.; Man, H.Y.

    In: I E E E Computational Intelligence Magazine, Vol. 8, No. 3, 2013, p. 54-63.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  377. Published

    Discovery of a novel selective PPARγ ligand with partial agonist binding properties by integrated in silico / in vitro work flow. / Kouskoumvekaki, Irene; Petersen, Rasmus K.; Fratev, Filip Filipov ; Taboureau, Olivier ; Nielsen, Thomas Eiland; Oprea, Tudor; Sonne, Si Brask; Flindt, Esben N.; Jonsdottir, Svava Osk; Kristiansen, Karsten.

    In: Journal of Chemical Information and Modeling, Vol. 53, No. 4, 2013, p. 923-937.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  378. Published
  379. Published
  380. Published

    Docosahexaenoic acid status at 9 months is inversely associated with communicative skills in 3-year-old girls. / Engel, Sara; Tronhjem, Kathrine Marie Hagerup; Hellgren, Lars; Michaelsen, Kim F.; Lauritzen, Lotte.

    In: Maternal and Child Nutrition, Vol. 9, No. 4, 2013, p. 499-510.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  381. Published
  382. Published

    Effect of gestation on obesity-induced hepatic and placental inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Abstract from Abcam Symposium: Programming Obesity, Cambridge, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  383. Published
  384. Published

    Effects of butter from mountain-pasture grazing cows on risk markers of the metabolic syndrome compared with conventional Danish butter: a randomized controlled study.. / Werner, Louise Bruun; Hellgren, Lars; Raff, Marianne; Jensen, Søren K.; Petersen, Rikke A.; Drachmann, Tue; Tholstrup, Tine.

    In: Lipids in Health and Disease, Vol. 12, No. 99, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  385. Published

    Effects of maternal energy intake during gestation and lactation on leptin levels in the young and adult pups. / Ingvorsen, Camilla; Hellgren, Lars.

    2013. Abstract from Annual meeting in Dansk Selskab for Adipositasforskning, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  386. Published
  387. Published

    Electrochemical monitoring of reducing capacity during programmed cell death of plant tissue. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2013. Poster session presented at Plant Biotech Denmark Annual Meeting 2013, Frederiksberg, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  388. Published

    Elucidating hormonal/ROS networks during seed germination: insights and perspectives. / Diaz-Vivancos, Pedro; Barba Espin, Gregorio; Hernández, José Antonio.

    In: Plant Cell Reports, Vol. 32, No. 10, 2013, p. 1491-1502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  389. Published

    Aspergillus luchuensis, an industrially important black Aspergillus in East Asia. / Hong, Seung-Beom ; Lee, Mina; Kim, Dae-Ho ; Varga, J.; Frisvad, Jens Christian; Perrone, G.; Gomi, K.; Yamada, O.; Machida, M.; Houbraken, J.; Samson, Robert A.

    In: PLoS ONE, Vol. 8, No. 5, e63769, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  390. Published
  391. Published

    Aspergillus waksmanii sp. nov. and Aspergillus marvanovae sp. nov., two closely related species in section Fumigati. / Hubka, Vit; Peterson, Stephen W.; Frisvad, Jens Christian; Yaguchi, Takashi ; Kubatova, Alena; Kolarik, Miroslav.

    In: International Journal of Systematic and Evolutionary Microbiology, Vol. 63, 2013, p. 783–789.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  392. Published

    Emerging trends in the discovery of natural product antibacterials. / Bologa, Cristian G; Ursu, Oleg; Oprea, Tudor; Melançon, Charles E, III; Tegos, George P.

    In: Current Opinion in Pharmacology, Vol. 13, No. 5, 2013, p. 678-687.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  393. Published

    NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ. / Karosiene, Edita; Rasmussen, Michael; Blicher, Thomas; Lund, Ole; Buus, S.; Nielsen, Morten Munch.

    In: Immunogenetics, Vol. 65, No. 10, 2013, p. 711-724.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  394. Published
  395. Published
  396. Published

    Enhancing RGI lyase thermostability by targeted single point mutations. / Silva, Inês R.; Larsen, Dorte Møller; Jers, Carsten; Derkx, Patrick; Meyer, Anne S.; Mikkelsen, Jørn Dalgaard.

    In: Applied Microbiology and Biotechnology, Vol. 97, No. 22, 2013, p. 9727-9735.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  397. Published
  398. Published
  399. Published

    Epitope prediction methods. / Karosiene, Edita; Nielsen, Morten (Main supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 127 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  400. Published

    Erratum to: Small chromosomes among Danish Candida glabrata isolates originated through different mechanisms. / Ahmad, Khadija Mohamed; Ishchuk, Olena P.; Hellborg, Linda; Jørgensen, Gloria Pereira; Skvarc, Miha; Stenderup, Jørgen; Jørck-Ramberg, Dorte; Polakova, Silvia; Piškur, Jure.

    In: Antonie van Leeuwenhoek, Vol. 104, No. 2, 2013, p. 281-282.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  401. Published

    Evaluation of peptide selection approaches for epitope‐based vaccine design. / Schubert, B.; Lund, Ole; Nielsen, Morten.

    In: Tissue Antigens, Vol. 82, No. 4, 2013, p. 243–251.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  402. Published
  403. Published

    Exome mutation burden predicts clinical outcome in ovarian cancer carrying mutated BRCA1 and BRCA2 genes. / Birkbak, Nicolai Juul; Kochupurakkal, Bose; Gonzalez-Izarzugaza, Jose Maria; Li, Yang; Liu, Joyce; Szallasi, Zoltan Imre; Matulonis, Ursula; Richardson, Andrea L.; Iglehart, J. Dirk; Wang, Zhigang C.

    In: Cancer Research, Vol. 73, No. S1, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  404. Published

    Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut. / Dantas, Gautam; Sommer, Morten; Degnan, Patrick H. ; Goodman, Andrew L.

    In: Annual Review of Microbiology, Vol. 67, 2013, p. 459-475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  405. Published

    Exploring the Danish Diseasome. / Jensen, Anders Boeck; Brunak, Søren (Main supervisor); Jensen, Lars Juhl (Supervisor).

    Department of Systems Biology, DTU, 2013. 107 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  406. Published
  407. Published

    FADS genotype and diet are important determinants of DHA status: a cross-sectional study in Danish infants1-3. / Harsløf, Laurine Bente Schram; Larsen, Lesli Hingstrup; Ritz, Christian; Hellgren, Lars; Michaelsen, Kim Fleischer; Vogel, Ulla; Lauritzen, Lotte.

    In: American Journal of Clinical Nutrition, Vol. 97, No. 6, 2013, p. 1403-1410.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  408. Published

    Feasibility of bovine submaxillary mucin (BSM) films as biomimetic coating for polymeric biomaterials. / Lee, Seunghwan; Madsen, Jan Busk; Pakkanen, Kirsi I.

    Proceedings of the IASTED International Conference on Biomedical Engineering, BioMed 2013. 2013. p. 591-597.

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2014

  409. Published

    Filtering apparatus and method for mixing, extraction and/or separation. / Stubbe, Peter Reimer (Inventor); Hansen, Preben Bøje (Inventor).

    IPC No.: A23L1/221. Patent No.: WO2013024065 . Feb 21, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  410. Published

    Fluorescence spectroscopy and multi-way techniques. PARAFAC. / Murphy, Kathleen R.; Stedmon, Colin A.; Graeber, Daniel; Bro, Rasmus.

    In: Analytical Methods, Vol. 5, No. 23, 2013, p. 6557-6566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  411. Published

    Framework for assessing stability of biocatalytic oxidations. / Ramesh, Hemalata; Woodley, John.

    2013. Abstract from BIOTRANS 2013, Manchester, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  412. Published

    From essential to persistent genes: a functional approach to constructing synthetic life. / Acevedo-Rocha, Carlos G.; Fang, Gang; Schmidt, Markus; Ussery, David; Danchin, Antoine.

    In: Trends in Genetics, Vol. 29, No. 5, 2013, p. 273-279.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  413. Published

    From viral genome to specific peptide epitopes: methods for identifying porcine T cell epitopes based on in silico predictions, in vitro identification and ex vivo verification. / Pedersen, Lasse Eggers; Rasmussen, Michael; Harndah, Mikkel; Patch, Jared; Nielsen, Morten; Buus, Søren; Golde, William; Jungersen, Gregers.

    In: Journal of Immunology, Vol. 190, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  414. Published

    Functional Similarities and Disparities in Inflammation-Promoting Abilities of Gut-Derived Escherichia coli Strains from Patients with Inflammatory Bowel Diseases and Healthy Individuals. / Jensen, Stina Rikke; Mirsepasi, H.; Thysen, A.H.; Brynskov, J.; Krogfelt, K.; Petersen, A. M.; Pedersen, A. E.; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 266-267.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  415. Published

    Fungal and mycotoxin assessment of dried edible mushroom in Nigeria. / Ezekiel, C.N.; Sulyok, M.; Frisvad, Jens Christian; Somorin, Y.M.; Warth, B.; Houbraken, J.; Samson, R.A.; Krska, R.; Odebode, A.C.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 231-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  416. Published

    Fusarium graminearum and Its Interactions with Cereal Heads: Studies in the Proteomics Era.. / Yang, Fen; Jacobsen, Susanne; Jørgensen, Hans J L; Collinge, David B.; Svensson, Birte; Finnie, Christine.

    In: Frontiers in Plant Science, Vol. 4, 2013, p. 37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  417. Published

    Genetic and antigenic characterization of influenza A virus circulating in Danish swine during the past decade. / Fobian, Kristina; Kirk, Isa Kristina; Breum, Solvej Østergaard; Lewis, Nicola; Hjulsager, Charlotte Kristiane; Larsen, Lars Erik.

    2013. Abstract from Influenza2013, Oxford, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  418. Published
  419. Published

    Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes. / Barah, Pankaj; Jayavelu, Naresh Doni; Rasmussen, Simon; Nielsen, Henrik Bjørn; Mundy, John; Bones, Atle M.

    In: BMC Genomics, Vol. 14, No. 1, 2013, p. 722.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  420. Published
  421. Published

    Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.. / Edsgard, Stefan Daniel; Dalgaard, Marlene Danner; Weinhold, Nils; Wesolowska, Agata; Rajpert-De Meyts, Ewa; Ottesen, Anne Marie; Juul, Anders; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Gupta, Ramneek; Leffers, Henrik; Brunak, Søren.

    In: Frontiers in Endocrinology, Vol. 4, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  422. Published

    Genome-wide meta-analysis identifies new susceptibility loci for migraine.. / Anttila, Verneri; Winsvold, Bendik S; Gormley, Padhraig; Kurth, Tobias; Bettella, Francesco; McMahon, George; Kallela, Mikko; Malik, Rainer; de Vries, Boukje; Terwindt, Gisela; Medland, Sarah E; Todt, Unda; McArdle, Wendy L; Quaye, Lydia; Koiranen, Markku; Ikram, M Arfan; Lehtimäki, Terho; Stam, Anine H; Ligthart, Lannie; Wedenoja, Juho; Dunham, Ian; Neale, Benjamin M; Palta, Priit; Hamalainen, Eija; Schürks, Markus; Rose, Lynda M; Buring, Julie E; Ridker, Paul M; Steinberg, Stacy; Stefansson, Hreinn; Jakobsson, Finnbogi; Lawlor, Debbie A; Evans, David M; Ring, Susan M; Färkkilä, Markus; Artto, Ville; Kaunisto, Mari A; Freilinger, Tobias; Schoenen, Jean; Frants, Rune R; Pelzer, Nadine; Weller, Claudia M; Zielman, Ronald; Heath, Andrew C; Madden, Pamela A F; Montgomery, Grant W; Martin, Nicholas G; Borck, Guntram; Göbel, Hartmut; Heinze, Axel; Heinze-Kuhn, Katja; Williams, Frances M K; Hartikainen, Anna-Liisa; Pouta, Anneli; van den Ende, Joyce; Uitterlinden, Andre G; Hofman, Albert; Amin, Najaf; Hottenga, Jouke-Jan; Vink, Jacqueline M; Heikkilä, Kauko; Alexander, Michael; Muller-Myhsok, Bertram; Schreiber, Stefan; Meitinger, Thomas; Wichmann, Heinz Erich; Aromaa, Arpo; Eriksson, Johan G; Traynor, Bryan J; Trabzuni, Daniah; Rossin, Elizabeth; Hansen, Kasper Lage; Jacobs, Suzanne B R; Gibbs, J Raphael; Birney, Ewan; Kaprio, Jaakko; Penninx, Brenda W; Boomsma, Dorret I; van Duijn, Cornelia; Raitakari, Olli; Jarvelin, Marjo-Riitta; Zwart, John-Anker; Cherkas, Lynn; Strachan, David P; Kubisch, Christian; Ferrari, Michel D; van den Maagdenberg, Arn M J M; Dichgans, Martin; Wessman, Maija; Smith, George Davey; Stefansson, Kari; Daly, Mark J; Nyholt, Dale R; Chasman, Daniel I; Palotie, Aarno.

    In: Nature Genetics, Vol. 45, No. 8, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  423. Published
  424. Published
  425. Published

    Gestation reverses obesity-induced hepatic inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Poster session presented at Joint Symposium of Centre for Fetal programming and Early Nutrition Consortium, Hellerup, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  426. Published

    Gestation reverses obesity-induced hepatic inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 92, No. SI 160, 2013, p. 19-20.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  427. Published

    Global characterization of signalling networks associated with tamoxifen resistance in breast cancer. / Browne, Brigid C.; Hochgräfe, Falko; Wu, Jianmin; Millar, Ewan K. A.; Barraclough, Jane; Stone, Andrew; McCloy, Rachael A.; Lee, Christine S.; Roberts, Caroline; Ali, Naveid A.; Boulghourjian, Alice; Schmich, Fabian; Linding, Rune; Farrow, Lynn; Gee, Julia M. W.; Nicholson, Robert I.; O'Toole, Sandra A.; Sutherland, Robert L.; Musgrove, Elizabeth A.; Butt, Alison J.; Daly, Roger J.

    In: F E B S Journal, Vol. 280, No. 21, 2013, p. 5237-5257.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  428. Published

    Glucagon-Like Peptide-1 Protects Human Islets against Cytokine-Mediated β-Cell Dysfunction and Death: A Proteomic Study of the Pathways Involved. / Rondas, Dieter; Bugliani, Marco; D’Hertog, Wannes; Hansen, Kasper Lage; Masini, Mathilde; Waelkens, Etienne; Marchetti, Piero; Mathieu, Chantal; Overbergh, Lut.

    In: Journal of Proteome Research, Vol. 12, No. 9, 2013, p. 204193-4206.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  429. Published
  430. Published

    Gut Mucosal Regulation of Distinct Macrophage and Dendritic Cell Subsets During Early Stage Salmonella Infection. / Sørensen, Rikke Brandt; Petersen, A.; Larsen, Jeppe Madura; Licht, Tine Rask; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 262-263.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  431. Published

    HELQ promotes RAD51 paralogue-dependent repair to avert germ cell loss and tumorigenesis. / Adelman, Carrie A.; Lolo, Rafal L.; Birkbak, Nicolai Juul; Murina, Olga; Matsuzaki, Kenichiro; Horejsi, Zuzana; Parmar, Kalindi; Borel, Valérie; Skehel, J. Mark; Stamp, Gordon; D'Andrea, Alan; Sartori, Alessandro A; Swanton, Charles; Boulton, Simon J.

    In: Nature, Vol. 502, 2013, p. 381-384.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  432. Published

    Heterologous expression and characterization of bacterial 2-C-methyl-d-erythritol-4-phosphate pathway in Saccharomyces cerevisiae. / Carlsen, Simon; Ajikumar, Parayil Kumaran; Formenti, Luca Riccardo; Zhou, Kang; Phon, Too Heng; Nielsen, Michael Lynge; Eliasson Lantz, Anna; Kielland-Brandt, Morten; Stephanopoulos, Gregory.

    In: Applied Microbiology and Biotechnology, Vol. 97, No. 13, 2013, p. 5753-5769.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  433. Published

    Heterologous protein production in Streptomyces lividans. / Rattleff, Stig; Thykær, Jette (Supervisor); Eliasson Lantz, Anna (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 156 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  434. Published
  435. Published
  436. Published

    High beta-Lactamase Levels Change the Pharmacodynamics of beta-Lactam Antibiotics in Pseudomonas aeruginosa Biofilms. / Wang, Hengzhuang; Ciofu, Oana; Yang, Liang; Wu, Hong; Song, Zhijun; Oliver, Antonio; Hoiby, Niels.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 1, 2013, p. 196-204.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  437. Published
  438. Published

    High-Mannose Glycosylation of Infectious HIV-1 gp120 and Immune Regulation in Human Plasmacytoid Dendritic Cells. / Søndergaard, Jonas Nørskov; Vinner, L.; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 264-265.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  439. Published

    Identification of a novel immunoregulatory signaling pathway exploited by M. tuberculosis in dendritic cells. / Laursen, Janne Marie; Schoof, Erwin; Søndergaard, Jonas Nørskov; Linding, Rune; Pedersen, Susanne Brix.

    2013. Abstract from 15th International Congress of Immunology, Milan, Italy.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  440. Published

    Identification of a novel immunoregulatory signaling pathway exploited by M. tuberculosis in dendritic cells. / Laursen, Janne Marie; Schoof, Erwin; Søndergaard, Jonas Nørskov; Linding, Rune; Pedersen, Susanne Brix.

    2013. Abstract from 14th International Conference on Systems Biology, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  441. Published
  442. Published
  443. Published

    Identification of Four New agr Quorum Sensing-Interfering Cyclodepsipeptides from a Marine Photobacterium. / Kjærulff, Louise; Nielsen, Anita; Månsson, Maria; Gram, Lone; Larsen, Thomas Ostenfeld; Ingmer, Hanne; Gotfredsen, Charlotte Held.

    In: Marine Drugs, Vol. 11, No. 12, 2013, p. 5051-5062.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  444. Published

    Identification of LasR Ligands through a Virtual Screening Approach. / Skovstrup, Søren; Le Quement, Sebastian Thordal; Hansen, Thomas; Jakobsen, Tim Holm; Harmsen, Morten; Tolker‐Nielsen, Tim; Nielsen, Thomas Eiland; Givskov, Michael Christian; Taboureau, Olivier .

    In: ChemMedChem, Vol. 8, No. 1, 2013, p. 157-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  445. Published

    Identification of peptides from foot‐and‐mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA) alleles, SLA‐1*0401 and SLA‐2*0401. / Pedersen, Lasse Eggers; Harndahl, M.; Nielsen, Morten; Patch, J. R.; Jungersen, Gregers; Buus, S.; Golde, W. T.

    In: Animal Genetics, Vol. 44, No. 3, 2013, p. 251-258.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  446. Published

    Identification of the Receptor-Binding Protein in Lytic Leuconostoc pseudomesenteroides Bacteriophages. / Kot, Witold Piotr; Hammer, Karin; Neve, Horst; Vogensen, Finn Kvist.

    In: Applied and Environmental Microbiology, Vol. 79, No. 10, 2013, p. 3311-3314.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  447. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Biology of Blood and Marrow Transplantation, Vol. 19, No. 2, 2013, p. S335.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  448. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 317-318.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  449. Published

    Improving data and knowledge management to better integrate health care and research. / Cases, M.; Furlong, L. I.; Albanell, J.; Altman, R. B.; Bellazzi, R.; Boyer, S.; Brand, A.; Brookes, A. J.; Brunak, Søren; Clark, T.W.; Gea, J.; Ghazal, P.; Graf, N.; Guigó, R.; Klein, T. E.; López‐Bigas, N.; Maojo, V.; Mons, B.; Musen, M.; Oliveira, J. L.; Rowe, A.; Ruch, P.; Shabo, A.; Shortliffe, E. H.; Valencia, A.; Lei, J., van der; Mayer, M. A.; Sanz, F.

    In: Journal of Internal Medicine, Vol. 274, No. 4, 2013, p. 321-328.

    Publication: Research - peer-reviewEditorial – Annual report year: 2013

  450. Published

    Inconsistency in large pharmacogenomic studies. / Haibe-Kains, Benjamin; El-Hachem, Nehme; Birkbak, Nicolai Juul; Jin, Andrew C.; Beck, Andrew H; Aerts, Hugo J. W. L.; Quackenbush, John.

    In: Nature, Vol. 504, No. 7480, 2013, p. 389–393.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  451. Published

    Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory.. / Otero, José Manuel; Cimini, Donatella; Patil, Kiran Raosaheb; Poulsen, Simon Guldberg; Olsson, Lisbeth; Nielsen, Jens.

    In: P L o S One, Vol. 8, No. 1, e54144, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  452. Published

    Influence of natural substrates and co-occurring marine bacteria on the production of secondary metabolites by Photobacterium halotolerans. / Månsson, Maria; Giobergia, Sonia; Møller, Kirsten A.; Dorrestein, Pieter C. ; Gram, Lone.

    2013. Poster session presented at 14th International Symposium on Marine Natural Products, Island of la Toja, Galicia, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  453. Published
  454. Published

    In silico peptide-binding predictions of passerine MHC class I reveal similarities across distantly related species, suggesting convergence on the level of protein function. / Follin, Elna; Karlsson, Maria; Lundegaard, Claus; Nielsen, Morten; Wallin, Stefan; Paulsson, Kajsa Maria; Westerdahl, Helena.

    In: Immunogenetics, Vol. 65, No. 4, 2013, p. 299-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  455. Published

    Integrated approaches for assessment of cellular performance in industrially relevant filamantous fungi. / Workman, Mhairi; Andersen, Mikael Rørdam; Thykær, Jette.

    In: Industrial Biotechnology, Vol. 9, No. 6, 2013, p. 337-344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  456. Published

    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics. / Khurana, Ekta; Fu, Yao; Colonna, Vincenza; Mu, Xinmeng Jasmine; Kang, Hyun Min; Lappalainen, Tuuli; Sboner, Andrea; Lochovsky, Lucas; Chen, Jieming; Harmanci, Arif; Das, Jishnu; Abyzov, Alexej; Balasubramanian, Suganthi; Beal, Kathryn; Chakravarty, Dimple; Challis, Daniel; Chen, Yuan; Clarke, Declan; Clarke, Laura; Cunningham, Fiona; Evani, Uday S.; Flicek, Paul; Fragoza, Robert; Garrison, Erik; Gibbs, Richard; Gümüş, Zeynep H.; Herrero, Javier; Kitabayashi, Naoki; Kong, Yong; Lage, Kasper; Liluashvili, Vaja; Lipkin, Steven M.; MacArthur, Daniel G.; Marth, Gabor; Muzny, Donna; Pers, Tune Hannes; Ritchie, Graham R. S.; Rosenfeld, Jeffrey A.; Sisu, Cristina; Wei, Xiaomu; Wilson, Michael; Xue, Yali; Yu, Fuli; Dermitzakis, Emmanouil T.; Yu, Haiyuan; Rubin, Mark A.; Tyler-Smith, Chris; Gerstein, Mark.

    In: Science, Vol. 342, No. 6154, 1235587, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  457. Published

    Internet-Based Solutions for Analysis of Next-Generation Sequence Data. / Larsen, Mette Voldby.

    In: Journal of Clinical Microbiology, Vol. 51, No. 9, 2013, p. 3162-3162.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  458. Published
  459. Published

    Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny. / Mahony, Jennifer; Kot, Witold Piotr; Murphy, James; Ainsworth, Stuart; Neve, Horst; Hansen, Lars H.; Heller, Knut J.; Sørensen, Søren; Hammer, Karin; Cambillau, Christian; Vogensen, Finn Kvist; van Sinderen, Douwe.

    In: Applied and Environmental Microbiology, Vol. 79, No. 14, 2013, p. 4385-4392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  460. Published
  461. Published
  462. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis. / Zanivan, Sara; Meves, Alexander; Behrendt, Kristina; Schoof, Erwin; Neilson, Lisa J.; Cox, Jürgen; Tang, Hao R.; Kalna, Gabriela; van Ree, Janine H.; van Deursen, Jan M.; Trempus, Carol S.; Machesky, Laura M.; Linding, Rune; Wickström, Sara A.; Fässler, Reinhard; Mann, Matthias.

    In: Cell Reports, Vol. 3, No. 2, 2013, p. 552-566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  463. Published

    Key aromatic residues at subsites +2 and +3 of glycoside hydrolase family 31 α-glucosidase contribute to recognition of long-chain substrates. / Tagami, Takayoshi; Okuyama, Masayuki; Nakai, Hiroyuki; Kim, Young-Min; Mori, Haruhide; Taguchi, Kazunori; Svensson, Birte; Kimura, Atsuo.

    In: B B A - Proteins and Proteomics, Vol. 1834, No. 1, 2013, p. 329-335.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  464. Published

    Kinetic analysis of inhibition of glucoamylase and active site mutants via chemoselective oxime immobilization of acarbose on SPR chip surfaces. / Sauer, Jørgen; Abou Hachem, Maher ; Svensson, Birte; Jensen, Knud J.; Thygesen, Mikkel.

    In: Carbohydrate Research, Vol. 375, 2013, p. 21-28.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  465. Published

    Kinetic Model for Signal Binding to the Quorum Sensing Regulator LasR. / Claussen, Anetta; Jakobsen, Tim Holm; Bjarnsholt, Thomas; Givskov, Michael; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: International Journal of Molecular Sciences (Online), Vol. 14, No. 7, 2013, p. 13360-13376.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  466. Published

    Lab and Bench-Scale Pelletization of Torrefied Wood Chips : Process Optimization and Pellet Quality. / Shang, Lei; Nielsen, Niels Peter K. ; Stelte, Wolfgang; Dahl, Jonas; Ahrenfeldt, Jesper; Holm, Jens Kai; Puig Arnavat, Maria; Bach, Lars Stougaard; Henriksen, Ulrik Birk.

    In: Bioenergy Research, Vol. 7, No. 1, 2013, p. 87-94.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  467. Published

    LC-MS at core of university-industry link. / Linding, Rune.

    In: Trends in Analytical Chemistry, Vol. 51, 2013, p. VIII-IX.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  468. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from Cell Symposia, Lisbon, Portugal.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  469. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from 27th Nordic Lipid Symposium, Helsinki, Finland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  470. Published

    Listeria monocytogenes strains encoding premature stop codons in inlA invade mice and guinea pig fetuses in orally dosed dams. / Holch, Anne; Ingmer, Hanne; Licht, Tine Rask; Gram, Lone.

    In: Journal of Medical Microbiology, Vol. 62, No. Pt 12, 2013, p. 1799-1806.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  471. Published

    Literature classification for semi-automated updating of biological knowledgebases. / Olsen, Lars Rønn; Kudahl, Ulrich Johan; Winther, Ole; Brusic, Vladimir.

    In: B M C Genomics, Vol. 14, No. Suppl. 5, S14, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  472. Published

    Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads. / Gautier, Laurent; Lund, Ole.

    In: P L o S One, Vol. 8, No. 12, e83784, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  473. Published

    Low Cost Semi-Continuous Quantification of Campylobacter by Air Sampling in Broiler Houses. / Søndergaard, Mette Sofie Rousing; Löfström, Charlotta; Josefsen, Mathilde Hartmann; Hoorfar, Jeffrey.

    2013. Poster session presented at 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, Aberdeen, United Kingdom.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  474. Published

    Mapping Condition-Dependent Regulation of Lipid Metabolism in Saccharomyces cerevisiae.. / Jewett, Michael Christopher; Workman, Christopher; Nookaew, Intawat; Pizarro, Francisco A; Agosin, Eduardo; Hellgren, Lars; Nielsen, Jens.

    In: G3 Defence, Vol. 3, No. 11, 2013, p. 1979-1995.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  475. Published

    Medical Information Retrieval Enhanced with User's Query Expanded with Tag-Neighbors. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    Handbook of Medical and Healthcare Technologies. Vol. Part I Springer, 2013. p. 17-40 .

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  476. Published

    Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.. / Bønnelykke, Klaus; Matheson, Melanie C; Pers, Tune Hannes; Granell, Raquel; Strachan, David P; Alves, Alexessander Couto; Linneberg, Allan René; Curtin, John A; Warrington, Nicole M; Standl, Marie; Kerkhof, Marjan; Jonsdottir, Ingileif; Bukvic, Blazenka K; Kaakinen, Marika; Sleimann, Patrick; Thorleifsson, Gudmar; Thorsteinsdottir, Unnur; Schramm, Katharina; Baltic, Svetlana; Kreiner-Møller, Eskil; Simpson, Angela; Pourcain, Beate St; Coin, Lachlan; Hui, Jennie; Walters, Eugene H; Tiesler, Carla M T; Duffy, David L; Jones, Graham; Ring, Susan M; McArdle, Wendy L; Price, Loren; Robertson, Colin F; Pekkanen, Juha; Tang, Clara S; Thiering, Elisabeth; Montgomery, Grant W; Hartikainen, Anna-Liisa; Dharmage, Shyamali C; Husemoen, Lise Lotte Nystrup; Herder, Christian; Kemp, John P; Elliot, Paul; James, Alan; Waldenberger, Melanie; Abramson, Michael J; Fairfax, Benjamin P; Knight, Julian C; Gupta, Ramneek; Thompson, Philip J; Holt, Patrick; Sly, Peter; Hirschhorn, Joel N; Blekic, Mario; Weidinger, Stephan; Hakonarsson, Hakon; Stefansson, Kari; Heinrich, Joachim; Postma, Dirkje S; Custovic, Adnan; Pennell, Craig E; Jarvelin, Marjo-Riitta; Koppelman, Gerard H; Timpson, Nicholas; Ferreira, Manuel A; Bisgaard, Hans; Henderson, A John.

    In: Nature Genetics, 2013.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  477. Published

    Metagenomic Analysis of the Human Gut Microbiome. / dos Santos, Marcelo Bertalan Quintanilha; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 117 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  478. Published

    Metagenomic species profiling using universal phylogenetic marker genes. / Sunagawa, Shinichi; Mende, Daniel R; Zeller, Georg; Izquierdo-Carrasco, Fernando; Berger, Simon A; Kultima, Jens Roat; Coelho, Luis Pedro; Arumugam, Manimozhiyan; Tap, Julien; Nielsen, Henrik Bjørn; Rasmussen, Simon; Brunak, Søren; Pedersen, Oluf; Guarner, Francisco; de Vos, Willem M; Wang, Jun; Li, Junhua; Doré, Joël; Ehrlich, S Dusko; Stamatakis, Alexandros; Bork, Peer.

    In: Nature Methods, Vol. 10, No. 12, 2013, p. 1196–1199.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  479. Published

    MetaRanker 2.0: a web server for prioritization of genetic variation data. / Pers, Tune Hannes; Dworzynski, Piotr; Thomas, Cecilia Engel; Hansen, Kasper Lage; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 41, No. Web Server issue, 2013, p. W104-W108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  480. Published

    Methods for predicting anti-cancer response. / Szallasi, Zoltan Imre (Inventor); Eklund, Aron Charles (Inventor); Birkbak, Nicolai Juul (Inventor); Richardson, Andrea L. (Inventor); Silver, Daniel P. (Inventor); Wang, Zhigang (Inventor).

    IPC No.: C12Q1/68. Patent No.: WO2013130347. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2012

  481. Published

    MHCcluster, a method for functional clustering of MHC molecules. / Thomsen, Martin Christen Frølund; Lundegaard, Claus; Buus, Søren; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 65, No. 9, 2013, p. 655-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  482. Published

    MicroRNA profiling in ocular adnexal lymphoma: a role for MYC and NFKB1 mediated dysregulation of microRNA expression in aggressive disease. / Hother, Christoffer; Rasmussen, Peter Kristian; Joshi, Tejal; Reker, Ditte; Ralfkiær, Ulrik; Workman, Christopher; Heegaard, Steffen; Ralfkiær, Elisabeth; Grønbæk, Kirsten.

    In: Investigative Ophthalmology & Visual Science, Vol. 54, No. 8, 2013, p. 5169-5175.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  483. Published

    MISTIC: mutual information server to infer coevolution. / Simonetti, Franco L.; Teppa, Elin; Chernomoretz, Ariel; Nielsen, Morten; Marino Buslje, Cristina.

    In: Nucleic Acids Research, Vol. 41, No. W1, 2013, p. 20W8-W14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  484. Published

    Molasses injection as a MEOR strategy: Enrichment incubations of brine/oil from North Sea Oil Field. / Halim, Amalia Yunita; Pedersen, Dorthe Skou; Eliasson Lantz, Anna; Nielsen, Sidsel Marie; Shapiro, Alexander.

    2013. Poster session presented at 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems, Rio de Janeiro, Brazil.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  485. Published

    Molecular Biological basis for statin resistance in naturally statin-producing organisms. / Rems, Ana; Frandsen, Rasmus John Normand.

    2013. Poster session presented at 27th Fungal Genetics Conference , Asilomar, United States.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  486. Published

    Molecular signaling networks in regulation of immunity and disease. / Laursen, Janne Marie; Jensen, Stina Rikke; Sørensen, Morten; Pedersen, Susanne Brix.

    2013. Abstract from Copenhagen Bioscience Conference – Genomics in metabolism, Snekkersten, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  487. Published

    Monitoring Expansion of T Cell Specifities Against Foot-and-Mpouth-Disease Virus (FMDV) in Swine With MHC Class I Tetramers Following a Prime/Boost Vaccination. / Pedersen, Lasse Eggers; Patch, J.; Glabman, R.; Kenney, M.; Nielsen, Morten; Buus, S.; Jungersen, Gregers; Golde, W. T.

    10th International Veterinary Immunology Symposium - IVIS 2013. 2013. p. 72 CS05.5.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  488. Published

    Monitoring programmed cell death of living plant tissues in microfluidics using electrochemical and optical techniques. / Mark, Christina; Heiskanen, Arto; Svensson, Birte; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2013. Abstract from Plant Biotech Denmark Annual Meeting 2013, Frederiksberg, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  489. Published

    Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives. / Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren.

    In: Fungal Biology, Vol. 117, No. 1, 2013, p. 32-40.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  490. Published

    Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 Are Identified in Individuals with Congenital Hypogonadotropic Hypogonadism. / Miraoui, Hichem; Dwyer, Andrew A.; Sykiotis, Gerasimos P.; Plummer, Lacey; Chung, Wilson; Feng, Bihua; Beenken, Andrew; Clarke, Jeff; Pers, Tune Hannes; Dworzynski, Piotr; Keefe, Kimberley; Niedziela, Marek; Raivio, Taneli; Crowley, William F., Jr.; Seminara, Stephanie B.; Quinton, Richard; Hughes, Virginia A.; Kumanov, Philip; Young, Jacques; Yialamas, Maria A.; Hall, Janet E.; Van Vliet, Guy; Chanoine, Jean-Pierre; Rubenstein, John; Mohammadi, Moosa; Tsai, Pei-San; Sidis, Yisrael; Hansen, Kasper Lage; Pitteloud, Nelly.

    In: American Journal of Human Genetics, Vol. 92, No. 5, 2013, p. 725-743.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  491. Published

    NetFCM: A Tool for Automated Flow Cytometric Data Analysis. / Frederiksen, Juliet Wairimu; Lund, Ole; Buggert, M.; Karlsson, A.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 44, 2013, p. 325.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  492. Published

    NETMHCSTAB - predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery. / Jørgensen, Kasper W.; Rasmussen, Michael; Buus, Søren; Nielsen, Morten.

    In: Immunology, Vol. 141, No. 1, 2013, p. 18-26.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  493. Published

    Nucleic Acid Aptamers as Novel Class of Therapeutics to Mitigate Alzheimer's Disease Pathology. / K. Tannenberg, Rudi; Al. Shamaileh, Hadi; Lauridsen, Lasse Holm; R. Kanwar, Jagat; R. Dodd, Peter; N. Veedu, Rakesh.

    In: Current Alzheimer Research, Vol. 10, No. 4, 2013, p. 442.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  494. Published

    Obesity-induced hepatic and placental inflammation are absent in obese gestating mice compared to control fed dams. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, Denise; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Abstract from 15th European Congress of Endocrinology 2013, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  495. Published

    Offspring from rat mothers fed a high-fat/high-sucrose diet during gestation and lactation accumulate free fatty acids in the liver when exposed to high fat diet as adults.. / Hellgren, Lars; Ingvorsen, Camilla.

    2013. Abstract from 11th Euro Fed Lipid Congress, Antalya, Turkey.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  496. Published

    One Fungus, One Name: Defining the Genus Fusarium in a Scientifically Robust Way That Preserves Longstanding Use.. / Geiser, David M.; Aoki, Takayuki; Bacon, Charles W.; E. Baker, Scott; Bhattacharyya, Madan K.; Brandt, Mary E.; Brown, Daren W. ; Burgess, Lester W. ; Chulze, Sofia ; Coleman, Jeffrey J. ; Correll, James C. ; Covert, Sarah F. ; Crous, Pedro W. ; Cuomo, Christina A.; Sybren De Hoog, G.; Di Pietro, Antonio; Elmer, Wade H. ; Epstein, Lynn; Frandsen, Rasmus John Normand; Freeman, Stanley; Gagkaeva, Tatiana; Glenn, Anthony E.; Gordon, Thomas R.; Gregory, Nancy F.; Hammond-Kosack, Kim E.; Hanson, Linda E. ; Jímenez-Gasco, María del Mar; Kang, Seogchan; Kistler, H. Corby ; Kuldau, Gretchen A.; Leslie, John F. ; Logrieco, Antonio; Lu, Guozhong; Lysøe, Erik; Ma, Li-Jun; P. McCormick, Susan; Migheli, Quirico; Moretti, Antonio; Munaut, Françoise; O'Donnell, Kerry; Pfenning, Ludwig; Ploetz, Randy C. ; Proctor, Robert H. ; Rehner, Stephen A. ; Robert, Vincent A. R. G. ; Rooney, Alejandro P. ; Salleh, Baharuddin bin ; Scandiani, Maria Mercedes ; Scauflaire, Jonathan; Short, Dylan P. G.; Steenkamp, Emma; Suga, Haruhisa; Summerell, Brett A. ; Sutton, Deanna A.; Thrane, Ulf; Trail, Francis; Diepeningen, Anne Van ; VanEtten, Hans D. ; Viljoen, Altus; Waalwijk, Cees; Ward, Todd J.; Wingfield, Michael J. ; Xu, Jin-Rong; Yang, Xiao-Bing ; Yli-Mattila, Tapani; Zhang, Ning.

    In: Phytopathology, Vol. 103, No. 5, 2013, p. 400-408.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  497. Published

    Overexpression of O‐methyltransferase leads to improved vanillin production in baker's yeast only when complemented with model‐guided network engineering. / Brochado, Ana Rita; Patil, Kiran R.

    In: Biotechnology and Bioengineering, Vol. 110, No. 2, 2013, p. 656-659.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  498. Published
  499. Published

    Parallel evolution of tumor subclones mimics diversity between tumors. / Martinez, Pierre; Birkbak, Nicolai Juul; Gerlinger, Marco; McGranahan, Nicholas; Burrell, Rebecca; Rowan, Andrew; Joshi, Tejal; Fisher, Rosalie; Larkin, James; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Journal of Pathology, Vol. 230, No. 4, 2013, p. 356-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  500. Published

    PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.. / Cosentino, Salvatore; Larsen, Mette Voldby; Aarestrup, Frank Møller; Lund, Ole.

    In: PloS one., Vol. 8, No. 10, 2013, p. e77302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  501. Published

    Pathogenic bacteria colonizing the airways in asymptomatic neonates stimulates topical inflammatory mediator release.. / Følsgaard, Nilofar Vahman; Schjørring, Susanne; Chawes, Bo Lund Krogsgaard; Rasmussen, Morten; Krogfelt, Karen Angeliki; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: American Journal of Respiratory and Critical Care Medicine, Vol. 187, No. 6, 2013, p. 589-595.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  502. Published

    Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes. / Alsmark, Cecilia; Foster, Peter G; Sicheritz-Pontén, Thomas; Nakjang, Sirintra; Martin Embley, T; Hirt, Robert P.

    In: Genome Biology, Vol. 14, No. 2, 2013, p. R19.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  503. Published

    Penicillium subrubescens, a new species efficiently producing inulinase. / Mansouri, S.; Houbraken, J.; Samson, R.A.; Frisvad, Jens Christian; Christensen, M.; Tuthill, D. E.; Koutaniemi, S.; Hatakka, A.; Lankinen, P.

    In: Antonie van Leeuwenhoek, Vol. 103, No. 6, 2013, p. 1343-1357.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

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