Department of Systems Biology

  1. 2014
  2. Published
  3. Published

    A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy. / Bruhn, Sören; Fang, Yu; Barrenäs, Fredrik; Gustafsson, Mika; Zhang, Huan; Konstantinell, Aelita; Krönke, Andrea; Sönnichsen, Birte; Bresnick, Anne; Dulyaninova, Natalya; Wang, Hui; Zhao, Yelin; Klingelhöfer, Jörg; Ambartsumian, Noona; Beck, Mette Kristina; Nestor, Colm; Bona, Elsa; Xiang, Zou; Benson, Mikael.

    In: Science Translational Medicine, Vol. 6, No. 218, 2014, p. 20218ra4-218ra4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  4. Published
  5. Published
  6. Published

    An elevated pro-inflammatory cytokine profile in multiple chemical sensitivity. / Dantoft, Thomas Meinertz; Elberling, J.; Pedersen, Susanne Brix; Szecsi, P.B.; Vesterhauge, S.; Skovbjerg, S.

    In: Psychoneuroendocrinology, Vol. 40, 2014, p. 140-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  7. Published
  8. Published

    A novel platform for heterologous gene expression in Trichoderma reesei (Teleomorph Hypocrea jecorina). / Jørgensen, Mikael Skaanning; Skovlund, Dominique Aubert; Johannesen, Pia Francke; Mortensen, Uffe Hasbro.

    In: Microbial Cell Factories, Vol. 13, No. 1, 2014, p. 33.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. E-pub ahead of print
  10. Published
  11. Published

    Children with asthma by school age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, Sune; Rasmussen, Morten Arendt; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 133, No. 4, 2014, p. 1008-1013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  12. Published

    Compass: A hybrid method for clinical and biobank data mining. / Krysiak-Baltyn, Konrad; Petersen, Thomas Nordahl; Audouze, Karine Marie Laure; Jørgensen, Niels; Ängquist, L.; Brunak, Søren.

    In: Journal of Biomedical Informatics, Vol. 47, 2014, p. 160-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  13. Published

    Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn. / Fahnøe, Ulrik; Höper, Dirk ; Beer, Martin; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 1, e01142-13, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    CoreFlow: A computational platform for integration, analysis and modeling of complex biological data. / Pasculescu, Adrian; Schoof, Erwin; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D.; Pawson, Tony; Linding, Rune; Colwill, Karen.

    In: Journal of Proteomics, Vol. 100, 2014, p. 167-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published

    Distinct substrate specificities of three glycoside hydrolase family 42 β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697. / Viborg, Alexander Holm; Katayama, Takane; Abou Hachem, Maher ; Andersen, Mathias Bækbo; Nishimoto, Mamoru; Clausen, Mads Hartvig; Urashima, Tadasu; Svensson, Birte; Kitaoka, Motomitsu.

    In: Glycobiology, Vol. 24, No. 2, 2014, p. 20208-216.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  16. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. / Sander, Adam F.; Lavstsen, Thomas; Rask, Thomas Salhøj; Lisby, Michael; Salanti, Ali; Fordyce, Sarah L.; Jespersen, Jakob S.; Carter, Richard; Deitsch, Kirk W.; Theander, Thor G.; Pedersen, Anders Gorm; Arnot, David E.

    In: Nucleic Acids Research, Vol. 42, No. 4, 2014, p. 202270-2281.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  17. Published

    Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, No. 4, 2014, p. 237-247.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published
  20. Published
  21. Published
  22. Published

    Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment. / Carrasco Pro, S.; Zimic, M.; Nielsen, Morten.

    In: Tissue Antigens, Vol. 83, No. 2, 2014, p. 94-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published

    Large-scale bioreactor production of the herbicide-degrading Aminobacter sp. strain MSH1. / Schultz-Jensen, Nadja; Knudsen, Berith Elkær; Frkova, Zuzana; Aamand, Jens; Johansen, Tina; Thykær, Jette; Sørensen, Sebastian R.

    In: Applied Microbiology and Biotechnology, Vol. 98, No. 5, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. Published

    Linear versus conformational epitopes of three cow's milk allergens. / Bøgh, Katrine Lindholm; Madsen, Jeanette Lund; Kroghsbo, Stine; Madsen, Charlotte Bernhard; Barkholt, Vibeke.

    In: Clinical and Translational Allergy, Vol. 4 , No. Suppl 2, P23, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  25. Published

    Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis. / Jiricny, Natalie; Molin, Søren; Foster, Kevin; Diggle, Stephen P.; Scanlan, Pauline D.; Ghoul, Melanie; Johansen, Helle Krogh; Santorelli, Lorenzo A.; Popat, Roman; West, Stuart A.; Griffin, Ashleigh S.

    In: P L o S One, Vol. 9, No. 1, 2014, p. Article No.: e83124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  26. Published

    Lysine deacetylase inhibition prevents diabetes by chromatin-independent immunoregulation and β-cell protection.. / Christensen, Dan Ploug; Gysemans, Conny; Lundh, Morten; Dahllöf, Mattias Salling; Noesgaard, Daniel; Schmidt, Søren Fisker; Mandrup, Susanne; Birkbak, Nicolai Juul; Workman, Christopher; Piemonti, Lorenzo; Blaabjerg, Lykke; Monzani, Valmen; Fossati, Gianluca; Mascagni, Paolo; Paraskevas, Steven; Aikin, Reid A; Billestrup, Nils; Grunnet, Lars Groth; Dinarello, Charles A; Mathieu, Chantal; Mandrup-Poulsen, Thomas.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, No. 3, 2014, p. 1055-1059.

    Publication: ResearchJournal article – Annual report year: 2014

  27. Published

    Micropeptins from Microcystis sp. collected in Kabul Reservoir, Israel. / Bladt, Tanja Thorskov; Kalifa-Aviv, Sivan; Larsen, Thomas Ostenfeld; Carmeli, Shmuel.

    In: Tetrahedron, Vol. 70, No. 4, 2014, p. 936-943.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  28. Published

    Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Noyan, Kajsa; Svärd, Jenny; Barqasho, Babilonia; Sönnerborg, Anders; Lund, Ole; Nowak, Piotr; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 192, No. 5, 2014, p. 2099-2108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  29. Published

    Natural mannosylation of HIV-1 gp120 imposes no immunoregulatory effects in primary human plasmacytoid dendritic cells. / Søndergaard, Jonas Nørskov; Vinner, Lasse; Pedersen, Susanne Brix.

    In: Molecular Immunology, Vol. 59, No. 2, 2014, p. 180-187.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  30. Published

    Polyamines are essential for virulence in Salmonella enterica serovar Gallinarum despite evolutionary decay of polyamine biosynthesis genes. / Schroll, Casper; Christensen, Jens P.; Christensen, Henrik; Pors, Susanne E.; Thorndahl, Lotte; Jensen, Peter Ruhdal; Olsen, John E.; Jelsbak, Lotte.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 144-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  31. Published

    Pre‐natal undernutrition and post‐natal overnutrition are associated with permanent changes in hepatic metabolism markers and fatty acid composition in sheep. / Hou, L.; Hellgren, Lars; Kongsted, A. H.; Vaag, A.; Nielsen, M. O.

    In: Acta Physiologica (Print), Vol. 210, No. 2, 2014, p. 317-329.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  32. Published

    Proteome reference maps of the Lotus japonicus nodule and root. / Dam, Svend Secher; Dyrlund, Thomas F.; Ussatjuk, Anna; Jochimsen, Bjarne; Nielsen, Kasper; Goffard, Nicolas; Ventosa, Miguel; Lorentzen, Andrea; Gupta, Vikas; Andersen, Stig U. ; Enghild, Jan J.; Ronson, Clive W.; Roepstorff, Peter; Stougaard, Jens.

    In: Journal of Proteomics, Vol. 14, 2014, p. 230-240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  33. Published
  34. Published

    Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling. / Tian, Pengfei; Jónsson, Sigurdur Æ.; Ferkinghoff-Borg, Jesper; Krivov, Sergei V.; Lindorff-Larsen, Kresten; Irbäck, Anders; Boomsma, Wouter.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 2, 2014, p. 543-553.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  35. Published

    Secreted single‐stranded DNA is involved in the initial phase of biofilm formation by Neisseria gonorrhoeae. / Zweig, Maria; Schork, Sabine; Koerdt, Andrea; Siewering, Katja; Sternberg, Claus; Thormann, Kai; Albers, Sonja‐Verena; Molin, Søren; Does, Chris, van der.

    In: Environmental Microbiology, Vol. 16, No. 4, 2014, p. 1040-1052.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  36. Published

    Sequence and comparative analysis of Leuconostoc dairy bacteriophages. / Kot, Witold; Hansen, Lars Henrik; Neve, Horst; Hammer, Karin; Jacobsen, Susanne; Pedersen, Per D.; Sørensen, Søren J.; Heller, Knut J.; Vogensen, Finn K.

    In: International Journal of Food Microbiology, Vol. 176, 2014, p. 29-37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  37. Published

    Size of quorum sensing communities. / Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Molecular BioSystems, Vol. 10, No. 103, 2014, p. 103-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  38. Published

    Solid‐Phase Synthesis and Biological Evaluation of N‐Dipeptido L‐Homoserine Lactones as Quorum Sensing Activators. / Hansen, Mette Reimert; Le Quement, Sebastian Thordal; Jakobsen, Tim Holm; Skovstrup, Søren; Taboureau, Olivier ; Tolker‐Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: ChemBioChem, Vol. 15, No. 3, 2014, p. 460-465.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  39. Published

    Solonamide B Inhibits Quorum Sensing and Reduces Staphylococcus aureus Mediated Killing of Human Neutrophils. / Nielsen, Anita; Månsson, Maria; Bojer, Martin S.; Gram, Lone; Larsen, Thomas Ostenfeld; Novick, Richard P.; Frees, Dorte; Frøkiær, Hanne; Ingmer, Hanne.

    In: P L o S One, Vol. 9, No. 1, e84992, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  40. Published

    Stability of the intra- and extracellular toxins of Prymnesium parvum using a microalgal bioassay. / Blossom, Hannah Eva; Andersen, Nikolaj Gedsted; Rasmussen, Silas Anselm; Hansen, Per Juel.

    In: Harmful Algae, Vol. 32, 2014, p. 11-21.

    Publication: ResearchJournal article – Annual report year: 2014

  41. Published

    Studies on genetic diversity of bovine viral diarrhea viruses in Danish cattle herds. / Nagy, Abdou; Fahnøe, Ulrik; Rasmussen, Thomas Bruun; Uttenthal, Åse.

    In: Virus Genes, Vol. 48, No. 2, 2014, p. 376-380.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  42. Published
  43. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from The Power of Programming Conference, Munich, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  44. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from The 11th Biennial ISSFAL Congress 2014, Stockholm, Sweden.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  45. Published

    The genome of a Late Pleistocene human from a Clovis burial site in western Montana.. / Rasmussen, Morten; Anzick, Sarah L.; Waters, Michael R; Skoglund, Pontus; DeGiorgio, Michael; Stafford, Thomas W, Jr; Rasmussen, Simon; Moltke, Ida; Albrechtsen, Anders; Doyle, Shane M; Poznik, G David; Gudmundsdottir, Valborg; Yadav, Rachita; Malaspinas, Anna Sapfo; White, Samuel Stockton, 5th; Allentoft, Morten Erik; Cornejo, Omar E.; Tambets, Kristiina; Eriksson, Anders; Heintzman, Peter D.; Karmin, Monika; Korneliussen, Thorfinn Sand; Meltzer, David J.; Pierre, Tracey Lynn; Stenderup, Jesper; Saag, Lauri; Warmuth, Vera M; Lopes, Margarida C; Malhi, Ripan S.; Brunak, Søren; Sicheritz-Pontén, Thomas; Barnes, Ian; Collins, Matthew; Orlando, Ludovic Antoine Alexandre; Balloux, Francois; Manica, Andrea; Gupta, Ramneek; Metspalu, Mait; Bustamante, Carlos D; Jakobsson, Mattias; Nielsen, Rasmus; Willerslev, Eske.

    In: Nature, Vol. 506, No. 7487, 2014, p. 225-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  46. Published

    The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313. / Herrero-Fresno, Ana; Wallrodt, Inke; Leekitcharoenphon, Pimlapas; Olsen, John Elmerdahl; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: PLOS ONE, Vol. 9, No. 1, e84566, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  47. Published

    Tolerance of Whole-Genome Doubling Propagates Chromosomal Instability and Accelerates Cancer Genome Evolution. / Dewhurst, Sally M.; McGranahan, Nicholas; Burrell, Rebecca A.; Rowan, Andrew J.; Grönroos, Eva; Endesfelder, David; Joshi, Tejal; Mouradov, Dmitri; Gibbs, Peter; Ward, Robyn L.; Hawkins, Nicholas J.; Szallasi, Zoltan Imre; Sieber, Oliver M.; Swanton, Charles.

    In: Cancer Discovery, Vol. 4, No. 2, 2014, p. 175-185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  48. Published
  49. Published

    α-Amylase: an enzyme specificity found in various families of glycoside hydrolases. / Janeček, Štefan; Svensson, Birte; MacGregor, E. Ann.

    In: Cellular and Molecular Life Sciences, Vol. 71, No. 7, 2014, p. 1149-1170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  50. 2013
  51. Published

    31P gain of chromosomal region 15q26 cause increased expression of blm and fanci, and is associated with sensitivity to platinum chemotherapy in triple negative breast cancer. / Birkbak, Nicolai Juul; Li, Y.; Bowman-Collin, C.; Iglehart, J.D.; Silver, D.; Wang, Z.C.; Szallasi, Zoltan Imre; Richardson, A.

    In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  52. Published
  53. Published

    A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night. / Ruzanski, Christian; Smirnova, Julia; Rejzek, Martin; Cockburn, Darrell; Pedersen, Henriette L.; Pike, Marilyn; Willats, William George Tycho; Svensson, Birte; Steup, Martin; Ebenhöh, Oliver; Smith, Alison M.; Field, Robert A.

    In: Journal of Biological Chemistry, Vol. 288, No. 40, 2013, p. 2028581-28598.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  54. Published
  55. Published

    A computational approach to chemical etiologies of diabetes.. / Audouze, Karine Marie Laure; Brunak, Søren; Grandjean, Philippe.

    In: Scientific Reports, Vol. 3, 2013, p. 2712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  56. Published
  57. Published

    Adaptive Evolution of Escherichia coli to an α-Peptide/β-Peptoid Peptidomimetic Induces Stable Resistance.. / Hein-Kristensen, Line; Franzyk, Henrik; Holch, Anne; Gram, Lone.

    In: PloS one., Vol. 8, No. 9, e73620, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  58. Published

    Adhesion of human and animal escherichia coli strains in association with their virulence-associated genes and phylogenetic origins. / Fr̈mmel, Ulrike; R̈diger, Stefan; B̈hm, Alexander; Nitschke, J̈rg; Groß, Julia; Roggenbuck, Dirk; Schr̈der, Christian; Schierack, Peter; Lehmann, Werner; Roggenbuck, Dirk; Zinke, Olaf; Ansorge, Hermann; Vogel, Steffen; Klemm, Per; Wex, Thomas; Wieler, Lothar H.

    In: Applied and Environmental Microbiology, Vol. 79, No. 19, 2013, p. 5814-5829.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  59. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, C.P.; Berentzen, T.L.; Østergaard, J.N.; Dahm, C.C.; Hellgren, Lars; Schmidt, E.B.; Tjønneland, A.; Sørensen, T.I.A.; Overvad, K.; Jakobsen, M.U.

    2013. Abstract from European Congress on Obesity 2013, Liverpool, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  60. Published
  61. Published

    A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.. / Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; den Dekker, Herman T; Husby, Anders; Sevelsted, Astrid; Faura-Tellez, Grissel; Mortensen, Li Juel; Paternoster, Lavinia; Flaaten, Richard; Mølgaard, Anne; Smart, David E; Thomsen, Philip Francis; Rasmussen, Morten; Bonàs-Guarch, Silvia; Holst, Claus; Nohr, Ellen A; Yadav, Rachita; March, Michael E; Blicher, Thomas Holberg; Lackie, Peter M; Jaddoe, Vincent W V; Simpson, Angela; Holloway, John W; Duijts, Liesbeth; Custovic, Adnan; Davies, Donna E; Torrents, David; Gupta, Ramneek; Hollegaard, Mads Vilhelm; Hougaard, David M; Hakonarson, Hakon; Bisgaard, Hans Flinker.

    In: Nature Genetics, 2013.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  62. Published

    Alpha-amylase - an enzyme present in various sequence-based glycoside hydrolase families. / Janecek, S.; Svensson, Birte; MacGregor, E. Ann.

    In: F E B S Journal, Vol. 280, 2013, p. 546-546.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  63. Published

    A Mild Method for Regioselective Labeling of Aromatics with Radioactive Iodine. / Rønnest, Mads Holger; Nissen, Felix; Pedersen, Palle Jacob; Larsen, Thomas Ostenfeld; Mier, Walter; Clausen, Mads Hartvig.

    In: European Journal of Organic Chemistry, Vol. 2013, No. 19, 2013, p. 3970-3973.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  64. Published

    Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes.. / Bohlin, Jon; Brynildsrud, Ola Brønstad; Vesth, Tammi Camilla; Skjerve, Eystein; Ussery, David.

    In: PLoS ONE, Vol. 8, No. 7, e69878, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  65. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, M. Thomas P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    The nature of parasitism: Joint Spring Symposium 2013, Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. 2013. p. 8.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  66. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next-generation-sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Thomas, M.; Gilbert, P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    In: Tropical Medicine & International Health, Vol. 18, No. Supplement 1 , 2013, p. 67-67.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  67. Published

    An exoproteome approach to monitor safety of a cheese-isolated Lactococcus lactis. / Genovese, Federica; Coïsson, Jean Daniel; Majumder, Avishek; Pessione, Alessandro; Svensson, Birte; Jacobsen, Susanne; Pessione, Enrica.

    In: Food Research International, Vol. 54, No. 1, 2013, p. 1072-1079.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  68. Published

    A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk. / Blair, David R.; Lyttle, Christopher S.; Mortensen, Jonathan M.; Bearden, Charles F.; Jensen, Anders Boeck; Khiabanian, Hossein; Melamed, Rachel; Rabadan, Raul; Bernstam, Elmer V.; Brunak, Søren; Jensen, Lars Juhl; Nicolae, Dan; Shah, Nigam H.; Grossman, Robert L.; Cox, Nancy J.; White, Kevin P.; Rzhetsky, Andrey.

    In: Cell, Vol. 155, No. 1, 2013, p. 70-80.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  69. Published

    A Novel Domain Cassette Identifies Plasmodium falciparum PfEMP1 Proteins Binding ICAM-1 and Is a Target of Cross-Reactive, Adhesion-Inhibitory Antibodies. / Bengtsson, Anja; Jørgensen, Louise; Rask, Thomas Salhøj; Olsen, Rebecca W.; Andersen, Marianne A.; Turner, Louise; Theander, Thor G.; Hviid, Lars; Higgins, Matthew K.; Craig, Alister; Brown, Alan; Jensen, Anja T. R.

    In: Journal of Immunology, Vol. 190, No. 1, 2013, p. 240-249.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  70. Published
  71. Published

    Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.

    Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  72. Published
  73. Published

    Arabidopsis thaliana AMY3 Is a Unique Redox-regulated Chloroplastic α-Amylase. / Seung, David; Thalmann, Matthias; Sparla, Francesca; Abou Hachem, Maher ; Lee, Sang Kyu; Issakidis-Bourguet, Emmanuelle; Svensson, Birte; Zeeman, Samuel C.; Santelia, Diana.

    In: Journal of Biological Chemistry, Vol. 288, No. 47, 2013, p. 33620-33633.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  74. Published
  75. Published

    A snapshot into the metabolism of isomalto-oligosaccharides in probiotic bacteria. / Abou Hachem, Maher ; Møller, Marie Sofie; Andersen, Joakim Mark; Fredslund, Folmer; Majumder, Avishek; Nakai, Hiroyuki; Leggio, Leila lo; Goh, Yong-Jun ; Barrangou, R.; Klaenhammer, Todd R.; Svensson, Birte.

    In: Journal of Applied Glycoscience, Vol. 60, No. 2, 2013, p. 95-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  76. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.. / Jensen, Michael Krogh; Lindemose, Søren; De Masi, Federico; Reimer, Julia J; Nielsen, Michael; Perera, Venura; Workman, Christopher; Turck, Franziska; Grant, Murray R; Mundy, John; Petersen, Morten; Skriver, Karen.

    In: FEBS Open Bio, Vol. 3, 2013, p. 321-327.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  77. Published

    Ataxia, Dementia, and Hypogonadotropism Caused by Disordered Ubiquitination. / Margolin, David H.; Kousi, Maria; Chan, Yee-Ming; Lim, Elaine T.; Schmahmann, Jeremy D.; Hadjivassiliou, Marios; Hall, Janet E.; Adam, Ibrahim; Dwyer, Andrew; Plummer, Lacey; Aldrin, Stephanie V.; O'Rourke, Julia; Kirby, Andrew; Hansen, Kasper Lage; Milunsky, Aubrey; Milunsky, Jeff M.; Chan, Jennifer; Hedley-Whyte, E. Tessa; Daly, Mark J.; Katsanis, Nicholas; Seminara, Stephanie B.

    In: New England Journal of Medicine, Vol. 368, No. 21, 2013, p. 1992-2003.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  78. Published

    A Unified Model of the GABA(A) Receptor Comprising Agonist and Benzodiazepine Binding Sites. / Kongsbak, Kristine Grønning; Bergmann, Rikke; Sørensen, Pernille Louise; Sander, Tommy; Balle, Thomas.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e52323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  79. Published

    A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study. / Eijsden, Rudy G. E. van; Stassen, Catherine; Daenen, Luk; Mulders, Sebastiaan E. Van; Bapat, Prashant Madhusudhan; Siewers, Verena; Goossens, Katty V. Y.; Nielsen, Jens; Delvaux, Freddy R.; Hummelen, Paul Van; Devreese, Bart; Willaert, Ronnie G.

    In: Biotechnology Letters, Vol. 35, No. 6, 2013, p. 891-900.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  80. Published

    A validated system for ligation-free USER™ -based assembly of expression vectors for mammalian cell engineering. / Lund, Anne Mathilde; Kildegaard, Helene Faustrup; Hansen, Bjarne Gram; Holm, Dorte Koefoed; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    2013. Poster session presented at 23rd ESACT meeting, Lille, France.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  81. Published

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food. / Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.; Berner, T.S.; Nielsen, Kristian Fog; Adimpong, David Bichala; Diawara, B.; Ouedraogo, G.A.; Jakobsen, M.; Thorsen, L.

    In: Journal of Applied Microbiology, Vol. 115, No. 1, 2013, p. 133-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  82. Published

    Bacterial natural transformation by highly fragmented and damaged DNA.. / Overballe-Petersen, Søren; Harms, Klaus; Orlando, Ludovic Antoine Alexandre; Mayar, J. Victor Moreno; Rasmussen, Simon; Dahl, Tais Wittchen; Rosing, Minik Thorleif; Poole, Anthony M; Sicheritz-Pontén, Thomas; Brunak, Søren; Inselmann, Sabrina; de Vries, Johann; Wackernagel, Wilfried; Pybus, Oliver G; Nielsen, Rasmus; Johnsen, Pål Jarle; Nielsen, Kaare Magne; Willerslev, Eske.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 49, 2013, p. 19860-19865.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  83. Published

    Biasogram: visualization of confounding technical bias in gene expression data.. / Krzystanek, Marcin; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e61872.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  84. Published

    Binding of the N-Terminal Domain of the Lactococcal Bacteriophage TP901-1 CI Repressor to Its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. / Frandsen, Kristian Erik Høpfner; Rasmussen, Kim K.; Jensen, Malene Ringkjøbing; Hammer, Karin; Pedersen, Margit; Poulsen, Jens-Christian Navarro; Arleth, Lise; Lo Leggio, Leila.

    In: Biochemistry, Vol. 52, No. 39, 2013, p. 6892-6904.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  85. Published
  86. Published
  87. E-pub ahead of print
  88. Published

    Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.

    Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  89. Published

    Biotribological properties of bovine submaxillary mucin (BSM) at the hydrophobic interface. / Madsen, Jan Busk; Nikogeorgos, Nikolaos; Abou Hachem, Maher ; Svensson, Birte; Lee, Seunghwan.

    In: European Cells & Materials, Vol. 26, No. Suppl. 6, 2013, p. 111.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  90. Published

    BlockLogo: Visualization of peptide and sequence motif conservation. / Olsen, Lars Rønn; Kudahl, Ulrich Johan; Simon, Christian; Sun, Jing; Schönbach, Christian; Reinherz, Ellis L.; Zhang, Guang Lan; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 400-401, 2013, p. 37-44.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  91. Published

    Cancer signaling networks and their implications for personalized medicine. / Creixell, Pau; Linding, Rune (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 113 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  92. Published

    Cell mass and cell cycle dynamics of an asynchronous budding yeast population : Experimental observations, flow cytometry data analysis, and multi-scale modeling. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Sørensen, Søren J.; Jensen, Anker Degn; Nopens, Ingmar; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology and Bioengineering (Print), Vol. 110, No. 3, 2013, p. 812-826.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  93. E-pub ahead of print

    Chaetoglobosin A preferentially induces apoptosis in chronic lymphocytic leukemia cells by targeting the cytoskeleton.. / Knudsen, Peter Boldsen; Hanna, B; Ohl, S; Sellner, L; Zenz, T; Döhner, H; Stilgenbauer, S; Larsen, Thomas Ostenfeld; Lichter, P; Seiffert, M.

    In: Leukemia, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  94. Published

    Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production. / Jensen, Birgit; Knudsen, Inge M.B.; Andersen, Birgitte; Nielsen, Kristian Fog; Thrane, Ulf; Jensen, Dan Funck; Larsen, John.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 313-322.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  95. Published

    Characterization of Pectin Nanocoatings at Polystyrene and Titanium Surfaces. / Gurzawska, Katarzyna; Dirscherl, Kai; Yihua, Yu; Byg, Inge; Jørgensen, Bodil; Svava, Rikke; Weiss Nielsen , Martin ; Jørgensen, Niklas R. ; Gotfredsen, Klaus.

    In: Journal of Surface Engineered Materials and Advanced Technology, Vol. 3, No. 4A, 2013, p. 20-28.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  96. Published
  97. Published

    ChemProt: A disease chemical biology database. / Taboureau, Olivier ; Oprea, Tudor I.

    Computational Chemogenomics. Pan Stanford Publishing, 2013.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  98. Published

    ClpP deletion causes attenuation of Salmonella Typhimurium virulence through mis-regulation of RpoS and indirect control of CsrA and the SPI genes. / Knudsen, Gitte Maegaard; Olsen, John E.; Aabo, Søren; Barrow, Paul; Rychlik, Ivan; Thomsen, Line E.

    In: Microbiology, Vol. 159, No. Part 7, 2013, p. 1497-1509.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  99. Published

    CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.. / Vesth, Tammi Camilla; Lagesen, Karin; Acar, Öncel; Ussery, David.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e60120.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  100. Published

    Colorectal cancer cell lines made resistant to SN38-and Oxaliplatin: Roles of altered ion transporter function in resistance?. / Sandra, Christensen; Jensen, Niels Frank; Stoeckel, Johanne Danmark; Belling, Kirstine C.; Romer, Maria Unni; Gupta, Ramneek; Brunner, Nils; Pedersen, Stine Helene Falsig; Stenvang, Jan.

    In: F A S E B Journal, Vol. 27, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  101. Published

    Comparative fermentation of insoluble carbohydrates in an in vitro human feces model spiked with Lactobacillus acidophilus NCFM. / Knudsen, Anne; van Zanten, Gabriella C.; Jensen, Susanne L.; Forssten, Sofia D.; Saarinen, Markku; Lahtinen, Sampo J.; Bandsholm, Ole; Svensson, Birte; Jespersen, Lene; Blennow, Andreas.

    In: Starch, Vol. 65, No. 3‐4, 2013, p. 346-353.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  102. Published

    Comparative Genomic Analysis of Rapid Evolution of an Extreme-Drug-Resistant Acinetobacter baumannii Clone. / Tan, Sean Yang-Yi; Chua, Song Lin; Liu, Yang; Høiby, Niels; Andersen, Leif Percival; Givskov, Michael Christian; Song, Zhijun; Yang, Liang.

    In: Genome Biology and Evolution, Vol. 5, No. 5, 2013, p. 807-818.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  103. Published
  104. Published

    Comparison of two Next Generation sequencing platforms for full genome sequencing of Classical Swine Fever Virus. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    ABSTRACTS: 7th Annual Meeting EPIZONE. 2013. p. 124 D 2.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  105. Published

    Comparison of typing by whole genome sequencing (WGS) and pulsed field gel electrophoresis (PFGE) of isolates from a hospital outbreak with a CTX-M-15 producing Klebsiella pneumoniae. / Hansen, D. S.; Kaas, Rolf Sommer; Nielsen, E. M.; Aarestrup, Frank Møller; Hasman, Henrik.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 154.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  106. Published

    Complete genes may pass from food to human blood. / Spisák, Sándor; Solymosi, Norbert; Ittzés, Péter; Bodor, András; Kondor, Dániel; Vattay, Gábor; Barták, Barbara K; Sipos, Ferenc; Galamb, Orsolya; Tulassay, Zsolt; Szállási, Zoltán; Rasmussen, Simon; Sicheritz-Ponten, Thomas; Brunak, Søren; Molnár, Béla; Csabai, István.

    In: PloS one., Vol. 8, No. 7, e69805, 2013, p. 11.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  107. Published

    Complete Genome Sequence of Pediococcus pentosaceus Strain SL4. / Dantoft, Shruti Harnal; Bielak, Eliza Maria; Seo, Jae-Gu; Chung, Myung-Jun; Jensen, Peter Ruhdal.

    In: Genome Announcements, Vol. 1, No. 6, e01106-13, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  108. Published

    Computational approaches to identify functional genetic variants in cancer genomes.. / Gonzalez-Perez, Abel; Mustonen, Ville; Reva, Boris; Ritchie, Graham R S; Creixell, Pau; Karchin, Rachel; Vazquez, Miguel; Fink, J Lynn; Kassahn, Karin S; Pearson, John V; Bader, Gary D; Boutros, Paul C; Muthuswamy, Lakshmi; Ouellette, B F Francis; Reimand, Jüri; Linding, Rune; Shibata, Tatsuhiro; Valencia, Alfonso; Butler, Adam; Dronov, Serge; Flicek, Paul; Shannon, Nick B; Carter, Hannah; Ding, Li; Sander, Chris; Stuart, Josh M; Stein, Lincoln D; Lopez-Bigas, Nuria.

    In: Nature Methods, Vol. 10, No. 8, 2013, p. 723-729.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  109. Published

    Computational optimisation of targeted DNA sequencing for cancer detection.. / Martinez, Pierre; McGranahan, Nicholas; Birkbak, Nicolai Juul; Gerlinger, Marco; Swanton, Charles.

    In: Scientific Reports, Vol. 3, 2013, p. 3309.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  110. Published

    Concordance of gene expression in human protein complexes reveals tissue specificity and pathology. / Börnigen, Daniela; Pers, Tune Hannes; Thorrez, Lieven; Huttenhower, Curtis; Moreau, Yves; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 41, No. 18, e171, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  111. Published

    Content and distribution of phytanic acid diastereomers in organic milk as affected by feed composition. / Che, Brita Ngum; Kristensen, Troels; Nebel, Caroline; Dalsgaard, Trine; Hellgren, Lars; Young, Jette Feveile; Larsen, Mette K.

    In: Journal of Agricultural and Food Chemistry, Vol. 61, No. 1, 2013, p. 225-230.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  112. Published

    Co-production of surfactin and a novel bacteriocin by Bacillus subtilis subsp. subtilis H4 isolated from bikalga, an African alkaline Hibiscus sabdariffa seed fermented condiment.. / Compaore, C. S.; Nielsen, Dennis S.; Ouoba, L. I. I.; Berner, Torben Sune; Nielsen, Kristian Fog; Sawadogo-Lingani, H.; Diawara, B.; Ouedraogo, G. A.; Jakobsen, Mogens; Thorsen, Line.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 297-307.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  113. Published

    Covalent Immobilization of β-Glucosidase on Magnetic Particles for Lignocellulose Hydrolysis. / Alftrén, Johan; Hobley, Timothy John.

    In: Applied Biochemistry and Biotechnology, Vol. 169, No. 7, 2013, p. 2076-2087.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  114. Published

    Cytotoxicity and mycotoxin production of shellfish‐derived Penicillium spp., a risk for shellfish consumers. / Geiger, M.; Guitton, Y.; Vansteelandt, M.; Kerzaon, I.; Blanchet, E.; Robiou du Pont, T.; Frisvad, Jens Christian; Hess, P.; Pouchus, Y.F.; Grovel, O.

    In: Letters in Applied Microbiology, Vol. 57, No. 5, 2013, p. 385-392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  115. Published
  116. Published

    Deconvoluting complex tissues for expression quantitative trait locus-based analyses. / Seo, Ji-Heui; Li, Qiyuan; Fatima, Aquila; Eklund, Aron Charles; Szallasi, Zoltan Imre; Polyak, Kornelia; Richardson, Andrea L.; Freedman, Matthew L.

    In: Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol. 368, No. 1620, 2013, p. 20120363-20120363.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  117. Published

    Deep phenotyping of the unselected COPSAC2010 birth cohort study. / Bisgaard, Hans Flinker; Vissing, Nadja Hawwa; Carson, C. G.; Bischoff, Anne Louise; Følsgaard, Nilofar Vahman; Kreiner‐Møller, E.; Chawes, Bo Lund Krogsgaard; Stokholm, J.; Pedersen, L.; Bjarnadóttir, E.; Thysen, Anna Hammerich; Nilsson, E.; Mortensen, L. J.; Olsen, S. F.; Schjørring, S.; Krogfelt, Karen Angeliki; Lauritzen, L.; Pedersen, Susanne Brix; Bønnelykke, K.

    In: Clinical & Experimental Allergy, Vol. 43, No. 12, 2013, p. 1384-1394.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  118. Published

    Détection et quantification de Morganella psychrotolerans dans des poissons par qPCR.. / Podeur, G.; Leroi, F.; Prevost, H.; Pilet, M. F.; Dalgaard, Paw; Emborg, J.; Martinussen, Jan; Hansen, L.

    2013. Abstract from 9e Congrès Nationale de la Société Francaise de Microbiologie, Lille, France.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  119. Published

    Detection of serological biomarkers by proximity extension assay for detection of colorectal neoplasias in symptomatic individuals. / Buch Thorsen, Stine ; Lundberg, Martin ; Villablanca, Andrea ; Christensen, Sarah Louise T.; Belling, Kirstine C.; Sander Nielsen, Birgitte ; Knowles, Mick ; Gee, Nick; Nielsen, Hans Jørgen ; Brünner, Nils; Jarle Christensen, Ib ; Fredriksson, Simon ; Stenvang, Jan ; Assarsson, Erika.

    In: Journal of Translational Medicine, Vol. 11, 253, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  120. Published
  121. Published
  122. Published

    Discovering Unique, Low-Energy Transition States Using Evolutionary Molecular Memetic Computing. / Ellabaan, Mostafa M Hashim; Ong, Y.S.; Handoko, S.D.; Kwoh, C.K.; Man, H.Y.

    In: I E E E Computational Intelligence Magazine, Vol. 8, No. 3, 2013, p. 54-63.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  123. Published

    Discovery of a novel selective PPARγ ligand with partial agonist binding properties by integrated in silico / in vitro work flow. / Kouskoumvekaki, Irene; Petersen, Rasmus K.; Fratev, Filip Filipov ; Taboureau, Olivier ; Nielsen, Thomas Eiland; Oprea, Tudor; Sonne, Si Brask; Flindt, Esben N.; Jonsdottir, Svava Osk; Kristiansen, Karsten.

    In: Journal of Chemical Information and Modeling, Vol. 53, No. 4, 2013, p. 923-937.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  124. Published
  125. Published
  126. Published

    Docosahexaenoic acid status at 9 months is inversely associated with communicative skills in 3-year-old girls. / Engel, Sara; Tronhjem, Kathrine Marie Hagerup; Hellgren, Lars; Michaelsen, Kim F.; Lauritzen, Lotte.

    In: Maternal and Child Nutrition, Vol. 9, No. 4, 2013, p. 499-510.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  127. Published
  128. E-pub ahead of print
  129. Published

    Effect of gestation on obesity-induced hepatic and placental inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Abstract from Abcam Symposium: Programming Obesity, Cambridge, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  130. Published
  131. Published

    Effects of butter from mountain-pasture grazing cows on risk markers of the metabolic syndrome compared with conventional Danish butter: a randomized controlled study.. / Werner, Louise Bruun; Hellgren, Lars; Raff, Marianne; Jensen, Søren K.; Petersen, Rikke A.; Drachmann, Tue; Tholstrup, Tine.

    In: Lipids in Health and Disease, Vol. 12, No. 99, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  132. Published

    Effects of maternal energy intake during gestation and lactation on leptin levels in the young and adult pups. / Ingvorsen, Camilla; Hellgren, Lars.

    2013. Abstract from Annual meeting in Dansk Selskab for Adipositasforskning, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  133. Published
  134. Published

    Elucidating hormonal/ROS networks during seed germination: insights and perspectives. / Diaz-Vivancos, Pedro; Barba Espin, Gregorio; Hernández, José Antonio.

    In: Plant Cell Reports, Vol. 32, No. 10, 2013, p. 1491-1502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  135. Published

    Aspergillus luchuensis, an industrially important black Aspergillus in East Asia. / Hong, Seung-Beom ; Lee, Mina; Kim, Dae-Ho ; Varga, J.; Frisvad, Jens Christian; Perrone, G.; Gomi, K.; Yamada, O.; Machida, M.; Houbraken, J.; Samson, Robert A.

    In: PLoS ONE, Vol. 8, No. 5, e63769, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  136. Published
  137. Published

    Aspergillus waksmanii sp. nov. and Aspergillus marvanovae sp. nov., two closely related species in section Fumigati. / Hubka, Vit; Peterson, Stephen W.; Frisvad, Jens Christian; Yaguchi, Takashi ; Kubatova, Alena; Kolarik, Miroslav.

    In: International Journal of Systematic and Evolutionary Microbiology, Vol. 63, 2013, p. 783–789.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  138. Published

    Emerging trends in the discovery of natural product antibacterials. / Bologa, Cristian G; Ursu, Oleg; Oprea, Tudor; Melançon, Charles E, III; Tegos, George P.

    In: Current Opinion in Pharmacology, Vol. 13, No. 5, 2013, p. 678-687.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  139. Published

    NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ. / Karosiene, Edita; Rasmussen, Michael; Blicher, Thomas; Lund, Ole; Buus, S.; Nielsen, Morten Munch.

    In: Immunogenetics, Vol. 65, No. 10, 2013, p. 711-724.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  140. Published
  141. Published
  142. Published

    Enhancing RGI lyase thermostability by targeted single point mutations. / Silva, Inês R.; Larsen, Dorte Møller; Jers, Carsten; Derkx, Patrick; Meyer, Anne S.; Mikkelsen, Jørn Dalgaard.

    In: Applied Microbiology and Biotechnology, Vol. 97, No. 22, 2013, p. 9727-9735.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  143. Published
  144. Published
  145. Published

    Epitope prediction methods. / Karosiene, Edita; Nielsen, Morten (Main supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 127 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  146. Published

    Erratum to: Small chromosomes among Danish Candida glabrata isolates originated through different mechanisms. / Ahmad, Khadija Mohamed; Ishchuk, Olena P.; Hellborg, Linda; Jørgensen, Gloria Pereira; Skvarc, Miha; Stenderup, Jørgen; Jørck-Ramberg, Dorte; Polakova, Silvia; Piškur, Jure.

    In: Antonie van Leeuwenhoek, Vol. 104, No. 2, 2013, p. 281-282.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  147. Published

    Evaluation of peptide selection approaches for epitope‐based vaccine design. / Schubert, B.; Lund, Ole; Nielsen, Morten.

    In: Tissue Antigens, Vol. 82, No. 4, 2013, p. 243–251.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  148. Published
  149. Published

    Exome mutation burden predicts clinical outcome in ovarian cancer carrying mutated BRCA1 and BRCA2 genes. / Birkbak, Nicolai Juul; Kochupurakkal, Bose; Gonzalez-Izarzugaza, Jose Maria; Li, Yang; Liu, Joyce; Szallasi, Zoltan Imre; Matulonis, Ursula; Richardson, Andrea L.; Iglehart, J. Dirk; Wang, Zhigang C.

    In: Cancer Research, Vol. 73, No. S1, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  150. Published

    Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut. / Dantas, Gautam; Sommer, Morten; Degnan, Patrick H. ; Goodman, Andrew L.

    In: Annual Review of Microbiology, Vol. 67, 2013, p. 459-475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  151. Published
  152. E-pub ahead of print

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour ; Brunak, Søren.

    In: Briefings in Bioinformatics, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  153. Published

    FADS genotype and diet are important determinants of DHA status: a cross-sectional study in Danish infants1-3. / Harsløf, Laurine Bente Schram; Larsen, Lesli Hingstrup; Ritz, Christian; Hellgren, Lars; Michaelsen, Kim Fleischer; Vogel, Ulla; Lauritzen, Lotte.

    In: American Journal of Clinical Nutrition, Vol. 97, No. 6, 2013, p. 1403-1410.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  154. Published

    Feasibility of bovine submaxillary mucin (BSM) films as biomimetic coating for polymeric biomaterials. / Lee, Seunghwan; Madsen, Jan Busk; Pakkanen, Kirsi I.

    Proceedings of the IASTED International Conference on Biomedical Engineering, BioMed 2013. 2013. p. 591-597.

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2014

  155. Published

    Filtering apparatus and method for mixing, extraction and/or separation. / Stubbe, Peter Reimer (Inventor); Hansen, Preben Bøje (Inventor).

    IPC No.: A23L1/221. Feb 21, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  156. Published

    Fluorescence spectroscopy and multi-way techniques. PARAFAC. / Murphy, Kathleen R.; Stedmon, Colin A.; Graeber, Daniel; Bro, Rasmus.

    In: Analytical Methods, Vol. 5, No. 23, 2013, p. 6557-6566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  157. Published

    Framework for assessing stability of biocatalytic oxidations. / Ramesh, Hemalata; Woodley, John.

    2013. Abstract from BIOTRANS 2013, Manchester, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  158. Published

    From essential to persistent genes: a functional approach to constructing synthetic life. / Acevedo-Rocha, Carlos G.; Fang, Gang; Schmidt, Markus; Ussery, David; Danchin, Antoine.

    In: Trends in Genetics, Vol. 29, No. 5, 2013, p. 273-279.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  159. Published

    Functional Similarities and Disparities in Inflammation-Promoting Abilities of Gut-Derived Escherichia coli Strains from Patients with Inflammatory Bowel Diseases and Healthy Individuals. / Jensen, Stina Rikke; Mirsepasi, H.; Thysen, A.H.; Brynskov, J.; Krogfelt, K.; Petersen, A.M.; Pedersen, A.E.; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 266-267.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  160. Published

    Fungal and mycotoxin assessment of dried edible mushroom in Nigeria. / Ezekiel, C.N.; Sulyok, M.; Frisvad, Jens Christian; Somorin, Y.M.; Warth, B.; Houbraken, J.; Samson, R.A.; Krska, R.; Odebode, A.C.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 231-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  161. Published

    Fusarium graminearum and Its Interactions with Cereal Heads: Studies in the Proteomics Era.. / Yang, Fen; Jacobsen, Susanne; Jørgensen, Hans J L; Collinge, David B.; Svensson, Birte; Finnie, Christine.

    In: Frontiers in Plant Science, Vol. 4, 2013, p. 37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  162. Published

    Genetic and antigenic characterization of influenza A virus circulating in Danish swine during the past decade. / Fobian, Kristina; Kirk, Isa Kristina; Breum, Solvej Østergaard; Lewis, Nicola; Hjulsager, Charlotte Kristiane; Larsen, Lars Erik.

    2013. Abstract from Influenza2013, Oxford, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  163. Published
  164. Published

    Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes. / Barah, Pankaj; Jayavelu, Naresh Doni; Rasmussen, Simon; Nielsen, Henrik Bjørn; Mundy, John; Bones, Atle M.

    In: BMC Genomics, Vol. 14, No. 1, 2013, p. 722.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  165. Published
  166. Published

    Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.. / Edsgard, Stefan Daniel; Dalgaard, Marlene Danner; Weinhold, Nils; Wesolowska, Agata; Rajpert-De Meyts, Ewa; Ottesen, Anne Marie; Juul, Anders; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Gupta, Ramneek; Leffers, Henrik; Brunak, Søren.

    In: Frontiers in Endocrinology, Vol. 4, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  167. Published

    Genome-wide meta-analysis identifies new susceptibility loci for migraine.. / Anttila, Verneri; Winsvold, Bendik S; Gormley, Padhraig; Kurth, Tobias; Bettella, Francesco; McMahon, George; Kallela, Mikko; Malik, Rainer; de Vries, Boukje; Terwindt, Gisela; Medland, Sarah E; Todt, Unda; McArdle, Wendy L; Quaye, Lydia; Koiranen, Markku; Ikram, M Arfan; Lehtimäki, Terho; Stam, Anine H; Ligthart, Lannie; Wedenoja, Juho; Dunham, Ian; Neale, Benjamin M; Palta, Priit; Hamalainen, Eija; Schürks, Markus; Rose, Lynda M; Buring, Julie E; Ridker, Paul M; Steinberg, Stacy; Stefansson, Hreinn; Jakobsson, Finnbogi; Lawlor, Debbie A; Evans, David M; Ring, Susan M; Färkkilä, Markus; Artto, Ville; Kaunisto, Mari A; Freilinger, Tobias; Schoenen, Jean; Frants, Rune R; Pelzer, Nadine; Weller, Claudia M; Zielman, Ronald; Heath, Andrew C; Madden, Pamela A F; Montgomery, Grant W; Martin, Nicholas G; Borck, Guntram; Göbel, Hartmut; Heinze, Axel; Heinze-Kuhn, Katja; Williams, Frances M K; Hartikainen, Anna-Liisa; Pouta, Anneli; van den Ende, Joyce; Uitterlinden, Andre G; Hofman, Albert; Amin, Najaf; Hottenga, Jouke-Jan; Vink, Jacqueline M; Heikkilä, Kauko; Alexander, Michael; Muller-Myhsok, Bertram; Schreiber, Stefan; Meitinger, Thomas; Wichmann, Heinz Erich; Aromaa, Arpo; Eriksson, Johan G; Traynor, Bryan J; Trabzuni, Daniah; Rossin, Elizabeth; Hansen, Kasper Lage; Jacobs, Suzanne B R; Gibbs, J Raphael; Birney, Ewan; Kaprio, Jaakko; Penninx, Brenda W; Boomsma, Dorret I; van Duijn, Cornelia; Raitakari, Olli; Jarvelin, Marjo-Riitta; Zwart, John-Anker; Cherkas, Lynn; Strachan, David P; Kubisch, Christian; Ferrari, Michel D; van den Maagdenberg, Arn M J M; Dichgans, Martin; Wessman, Maija; Smith, George Davey; Stefansson, Kari; Daly, Mark J; Nyholt, Dale R; Chasman, Daniel I; Palotie, Aarno.

    In: Nature Genetics, Vol. 45, No. 8, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  168. Published
  169. Published
  170. Published

    Gestation reverses obesity-induced hepatic inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Poster session presented at Joint Symposium of Centre for Fetal programming and Early Nutrition Consortium, Hellerup, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  171. Published

    Gestation reverses obesity-induced hepatic inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 92, No. SI 160, 2013, p. 19-20.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  172. Published

    Global characterization of signalling networks associated with tamoxifen resistance in breast cancer. / Browne, Brigid C.; Hochgräfe, Falko; Wu, Jianmin; Millar, Ewan K. A.; Barraclough, Jane; Stone, Andrew; McCloy, Rachael A.; Lee, Christine S.; Roberts, Caroline; Ali, Naveid A.; Boulghourjian, Alice; Schmich, Fabian; Linding, Rune; Farrow, Lynn; Gee, Julia M. W.; Nicholson, Robert I.; O'Toole, Sandra A.; Sutherland, Robert L.; Musgrove, Elizabeth A.; Butt, Alison J.; Daly, Roger J.

    In: F E B S Journal, Vol. 280, No. 21, 2013, p. 5237-5257.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  173. Published

    Glucagon-Like Peptide-1 Protects Human Islets against Cytokine-Mediated β-Cell Dysfunction and Death: A Proteomic Study of the Pathways Involved. / Rondas, Dieter; Bugliani, Marco; D’Hertog, Wannes; Hansen, Kasper Lage; Masini, Mathilde; Waelkens, Etienne; Marchetti, Piero; Mathieu, Chantal; Overbergh, Lut.

    In: Journal of Proteome Research, Vol. 12, No. 9, 2013, p. 204193-4206.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  174. Published
  175. Published
  176. Published

    HELQ promotes RAD51 paralogue-dependent repair to avert germ cell loss and tumorigenesis. / Adelman, Carrie A.; Lolo, Rafal L.; Birkbak, Nicolai Juul; Murina, Olga; Matsuzaki, Kenichiro; Horejsi, Zuzana; Parmar, Kalindi; Borel, Valérie; Skehel, J. Mark; Stamp, Gordon; D'Andrea, Alan; Sartori, Alessandro A; Swanton, Charles; Boulton, Simon J.

    In: Nature, Vol. 502, 2013, p. 381-384.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  177. Published

    Heterologous expression and characterization of bacterial 2-C-methyl-d-erythritol-4-phosphate pathway in Saccharomyces cerevisiae. / Carlsen, Simon; Ajikumar, Parayil Kumaran; Formenti, Luca Riccardo; Zhou, Kang; Phon, Too Heng; Nielsen, Michael Lynge; Eliasson Lantz, Anna; Kielland-Brandt, Morten; Stephanopoulos, Gregory.

    In: Applied Microbiology and Biotechnology, Vol. 97, No. 13, 2013, p. 5753-5769.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  178. Published

    Heterologous protein production in Streptomyces lividans. / Rattleff, Stig; Thykær, Jette (Supervisor); Eliasson Lantz, Anna (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 156 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  179. Published
  180. Published
  181. Published

    High beta-Lactamase Levels Change the Pharmacodynamics of beta-Lactam Antibiotics in Pseudomonas aeruginosa Biofilms. / Wang, Hengzhuang; Ciofu, Oana; Yang, Liang; Wu, Hong; Song, Zhijun; Oliver, Antonio; Hoiby, Niels.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 1, 2013, p. 196-204.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  182. Published
  183. Published

    High-Mannose Glycosylation of Infectious HIV-1 gp120 and Immune Regulation in Human Plasmacytoid Dendritic Cells. / Søndergaard, Jonas Nørskov; Vinner, L.; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 264-265.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  184. Published

    Identification of a novel immunoregulatory signaling pathway exploited by M. tuberculosis in dendritic cells. / Laursen, Janne Marie; Schoof, Erwin; Søndergaard, Jonas Nørskov; Linding, Rune; Pedersen, Susanne Brix.

    2013. Abstract from 15th International Congress of Immunology, Milan, Italy.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  185. Published

    Identification of a novel immunoregulatory signaling pathway exploited by M. tuberculosis in dendritic cells. / Laursen, Janne Marie; Schoof, Erwin; Søndergaard, Jonas Nørskov; Linding, Rune; Pedersen, Susanne Brix.

    2013. Abstract from 14th International conference on Systems Biology, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  186. Published
  187. Published

    Identification of Four New agr Quorum Sensing-Interfering Cyclodepsipeptides from a Marine Photobacterium. / Kjærulff, Louise; Nielsen, Anita; Månsson, Maria; Gram, Lone; Larsen, Thomas Ostenfeld; Ingmer, Hanne; Gotfredsen, Charlotte Held.

    In: Marine Drugs, Vol. 11, No. 12, 2013, p. 5051-5062.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  188. Published

    Identification of LasR Ligands through a Virtual Screening Approach. / Skovstrup, Søren; Le Quement, Sebastian Thordal; Hansen, Thomas; Jakobsen, Tim Holm; Harmsen, Morten; Tolker‐Nielsen, Tim; Nielsen, Thomas Eiland; Givskov, Michael Christian; Taboureau, Olivier .

    In: ChemMedChem, Vol. 8, No. 1, 2013, p. 157-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  189. Published

    Identification of peptides from foot‐and‐mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA) alleles, SLA‐1*0401 and SLA‐2*0401. / Pedersen, Lasse Eggers; Harndahl, M.; Nielsen, Morten; Patch, J. R.; Jungersen, Gregers; Buus, S.; Golde, W. T.

    In: Animal Genetics, Vol. 44, No. 3, 2013, p. 251-258.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  190. Published

    Identification of the Receptor-Binding Protein in Lytic Leuconostoc pseudomesenteroides Bacteriophages. / Kot, Witold Piotr; Hammer, Karin; Neve, Horst; Vogensen, Finn Kvist.

    In: Applied and Environmental Microbiology, Vol. 79, No. 10, 2013, p. 203311-3314.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  191. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Biology of Blood and Marrow Transplantation, Vol. 19, No. 2, 2013, p. S335.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  192. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 317-318.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  193. Published

    Improving data and knowledge management to better integrate health care and research. / Cases, M.; Furlong, L. I.; Albanell, J.; Altman, R. B.; Bellazzi, R.; Boyer, S.; Brand, A.; Brookes, A. J.; Brunak, Søren; Clark, T.W.; Gea, J.; Ghazal, P.; Graf, N.; Guigó, R.; Klein, T. E.; López‐Bigas, N.; Maojo, V.; Mons, B.; Musen, M.; Oliveira, J. L.; Rowe, A.; Ruch, P.; Shabo, A.; Shortliffe, E. H.; Valencia, A.; Lei, J., van der; Mayer, M. A.; Sanz, F.

    In: Journal of Internal Medicine, Vol. 274, No. 4, 2013, p. 321-328.

    Publication: Research - peer-reviewEditorial – Annual report year: 2013

  194. E-pub ahead of print

    Inconsistency in large pharmacogenomic studies.. / Haibe-Kains, Benjamin; El-Hachem, Nehme; Birkbak, Nicolai Juul; Jin, Andrew C.; Beck, Andrew H; Aerts, Hugo J. W. L.; Quackenbush, John.

    In: Nature, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  195. Published

    Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory.. / Otero, José Manuel; Cimini, Donatella; Patil, Kiran Raosaheb; Poulsen, Simon Guldberg; Olsson, Lisbeth; Nielsen, Jens.

    In: P L o S One, Vol. 8, No. 1, e54144, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  196. Published

    Influence of natural substrates and co-occurring marine bacteria on the production of secondary metabolites by Photobacterium halotolerans. / Månsson, Maria; Giobergia, Sonia; Møller, Kirsten A.; Dorrestein, Pieter C. ; Gram, Lone.

    2013. Poster session presented at 14th International Symposium on Marine Natural Products, Island of la Toja, Galicia, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  197. Published
  198. Published

    In silico peptide-binding predictions of passerine MHC class I reveal similarities across distantly related species, suggesting convergence on the level of protein function. / Follin, Elna; Karlsson, Maria; Lundegaard, Claus; Nielsen, Morten; Wallin, Stefan; Paulsson, Kajsa Maria; Westerdahl, Helena.

    In: Immunogenetics, Vol. 65, No. 4, 2013, p. 299-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  199. Published

    Integrated approaches for assessment of cellular performance in industrially relevant filamantous fungi. / Workman, Mhairi; Andersen, Mikael Rørdam; Thykær, Jette.

    In: Industrial Biotechnology, Vol. 9, No. 6, 2013, p. 337-344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  200. Published

    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics. / Khurana, Ekta; Fu, Yao; Colonna, Vincenza; Mu, Xinmeng Jasmine; Kang, Hyun Min; Lappalainen, Tuuli; Sboner, Andrea; Lochovsky, Lucas; Chen, Jieming; Harmanci, Arif; Das, Jishnu; Abyzov, Alexej; Balasubramanian, Suganthi; Beal, Kathryn; Chakravarty, Dimple; Challis, Daniel; Chen, Yuan; Clarke, Declan; Clarke, Laura; Cunningham, Fiona; Evani, Uday S.; Flicek, Paul; Fragoza, Robert; Garrison, Erik; Gibbs, Richard; Gümüş, Zeynep H.; Herrero, Javier; Kitabayashi, Naoki; Kong, Yong; Lage, Kasper; Liluashvili, Vaja; Lipkin, Steven M.; MacArthur, Daniel G.; Marth, Gabor; Muzny, Donna; Pers, Tune Hannes; Ritchie, Graham R. S.; Rosenfeld, Jeffrey A.; Sisu, Cristina; Wei, Xiaomu; Wilson, Michael; Xue, Yali; Yu, Fuli; Dermitzakis, Emmanouil T.; Yu, Haiyuan; Rubin, Mark A.; Tyler-Smith, Chris; Gerstein, Mark.

    In: Science, Vol. 342, No. 6154, 1235587, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  201. Published

    Internet-Based Solutions for Analysis of Next-Generation Sequence Data. / Larsen, Mette Voldby.

    In: Journal of Clinical Microbiology, Vol. 51, No. 9, 2013, p. 3162-3162.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  202. Published
  203. Published

    Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny. / Mahony, Jennifer; Kot, Witold Piotr; Murphy, James; Ainsworth, Stuart; Neve, Horst; Hansen, Lars H.; Heller, Knut J.; Sørensen, Søren; Hammer, Karin; Cambillau, Christian; Vogensen, Finn Kvist; van Sinderen, Douwe.

    In: Applied and Environmental Microbiology, Vol. 79, No. 14, 2013, p. 204385-4392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  204. Published
  205. Published
  206. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis. / Zanivan, Sara; Meves, Alexander; Behrendt, Kristina; Schoof, Erwin; Neilson, Lisa J.; Cox, Jürgen; Tang, Hao R.; Kalna, Gabriela; van Ree, Janine H.; van Deursen, Jan M.; Trempus, Carol S.; Machesky, Laura M.; Linding, Rune; Wickström, Sara A.; Fässler, Reinhard; Mann, Matthias.

    In: Cell Reports, Vol. 3, No. 2, 2013, p. 552-566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  207. Published

    Key aromatic residues at subsites +2 and +3 of glycoside hydrolase family 31 α-glucosidase contribute to recognition of long-chain substrates. / Tagami, Takayoshi; Okuyama, Masayuki; Nakai, Hiroyuki; Kim, Young-Min; Mori, Haruhide; Taguchi, Kazunori; Svensson, Birte; Kimura, Atsuo.

    In: B B A - Proteins and Proteomics, Vol. 1834, No. 1, 2013, p. 329-335.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  208. Published

    Kinetic analysis of inhibition of glucoamylase and active site mutants via chemoselective oxime immobilization of acarbose on SPR chip surfaces. / Sauer, Jørgen; Abou Hachem, Maher ; Svensson, Birte; Jensen, Knud J.; Thygesen, Mikkel.

    In: Carbohydrate Research, Vol. 375, 2013, p. 21-28.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  209. Published

    Kinetic Model for Signal Binding to the Quorum Sensing Regulator LasR. / Claussen, Anetta; Jakobsen, Tim Holm; Bjarnsholt, Thomas; Givskov, Michael; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: International Journal of Molecular Sciences (Online), Vol. 14, No. 7, 2013, p. 13360-13376.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  210. Published

    Lab and Bench-Scale Pelletization of Torrefied Wood Chips : Process Optimization and Pellet Quality. / Shang, Lei; Nielsen, Niels Peter K. ; Stelte, Wolfgang; Dahl, Jonas; Ahrenfeldt, Jesper; Holm, Jens Kai; Puig Arnavat, Maria; Bach, Lars Stougaard; Henriksen, Ulrik Birk.

    In: Bioenergy Research, Vol. 7, No. 1, 2013, p. 87-94.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  211. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from Cell Symposia, Lisbon, Portugal.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  212. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from 27th Nordic Lipid Symposium, Helsinki, Finland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  213. Published

    Listeria monocytogenes strains encoding premature stop codons in inlA invade mice and guinea pig fetuses in orally dosed dams. / Holch, Anne; Ingmer, Hanne; Licht, Tine Rask; Gram, Lone.

    In: Journal of Medical Microbiology, Vol. 62, No. Pt 12, 2013, p. 1799-1806.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  214. Published

    Literature classification for semi-automated updating of biological knowledgebases. / Olsen, Lars Rønn; Kudahl, Ulrich Johan; Winther, Ole; Brusic, Vladimir.

    In: B M C Genomics, Vol. 14, No. Suppl. 5, S14, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  215. Published

    Low Cost Semi-Continuous Quantification of Campylobacter by Air Sampling in Broiler Houses. / Søndergaard, Mette Sofie Rousing; Löfström, Charlotta; Josefsen, Mathilde Hartmann; Hoorfar, Jeffrey.

    2013. Poster session presented at 17th International Workshop on Campylobacter, Helicobacter and Related Organisms, Aberdeen, United Kingdom.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  216. Published

    Mapping Condition-Dependent Regulation of Lipid Metabolism in Saccharomyces cerevisiae.. / Jewett, Michael Christopher; Workman, Christopher; Nookaew, Intawat; Pizarro, Francisco A; Agosin, Eduardo; Hellgren, Lars; Nielsen, Jens.

    In: G3 Defence, Vol. 3, No. 11, 2013, p. 1979-1995.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  217. Published

    Medical Information Retrieval Enhanced with User's Query Expanded with Tag-Neighbors. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    Handbook of Medical and Healthcare Technologies. Vol. Part I Springer, 2013. p. 17-40 .

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  218. Published

    Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.. / Bønnelykke, Klaus; Matheson, Melanie C; Pers, Tune Hannes; Granell, Raquel; Strachan, David P; Alves, Alexessander Couto; Linneberg, Allan René; Curtin, John A; Warrington, Nicole M; Standl, Marie; Kerkhof, Marjan; Jonsdottir, Ingileif; Bukvic, Blazenka K; Kaakinen, Marika; Sleimann, Patrick; Thorleifsson, Gudmar; Thorsteinsdottir, Unnur; Schramm, Katharina; Baltic, Svetlana; Kreiner-Møller, Eskil; Simpson, Angela; Pourcain, Beate St; Coin, Lachlan; Hui, Jennie; Walters, Eugene H; Tiesler, Carla M T; Duffy, David L; Jones, Graham; Ring, Susan M; McArdle, Wendy L; Price, Loren; Robertson, Colin F; Pekkanen, Juha; Tang, Clara S; Thiering, Elisabeth; Montgomery, Grant W; Hartikainen, Anna-Liisa; Dharmage, Shyamali C; Husemoen, Lise Lotte Nystrup; Herder, Christian; Kemp, John P; Elliot, Paul; James, Alan; Waldenberger, Melanie; Abramson, Michael J; Fairfax, Benjamin P; Knight, Julian C; Gupta, Ramneek; Thompson, Philip J; Holt, Patrick; Sly, Peter; Hirschhorn, Joel N; Blekic, Mario; Weidinger, Stephan; Hakonarsson, Hakon; Stefansson, Kari; Heinrich, Joachim; Postma, Dirkje S; Custovic, Adnan; Pennell, Craig E; Jarvelin, Marjo-Riitta; Koppelman, Gerard H; Timpson, Nicholas; Ferreira, Manuel A; Bisgaard, Hans; Henderson, A John.

    In: Nature Genetics, 2013.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  219. Published

    Metagenomic Analysis of the Human Gut Microbiome. / dos Santos, Marcelo Bertalan Quintanilha; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 117 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  220. E-pub ahead of print

    Metagenomic species profiling using universal phylogenetic marker genes.. / Sunagawa, Shinichi; Mende, Daniel R; Zeller, Georg; Izquierdo-Carrasco, Fernando; Berger, Simon A; Kultima, Jens Roat; Coelho, Luis Pedro; Arumugam, Manimozhiyan; Tap, Julien; Nielsen, Henrik Bjørn; Rasmussen, Simon; Brunak, Søren; Pedersen, Oluf; Guarner, Francisco; de Vos, Willem M; Wang, Jun; Li, Junhua; Doré, Joël; Ehrlich, S Dusko; Stamatakis, Alexandros; Bork, Peer.

    In: Nature Methods, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  221. Published

    MetaRanker 2.0: a web server for prioritization of genetic variation data. / Pers, Tune Hannes; Dworzynski, Piotr; Thomas, Cecilia Engel; Hansen, Kasper Lage; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 41, No. Web Server issue, 2013, p. W104-W108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  222. Published

    Methods for predicting anti-cancer response. / Szallasi, Zoltan Imre (Inventor); Eklund, Aron Charles (Inventor); Birkbak, Nicolai Juul (Inventor); Richardson, Andrea L. (Inventor); Silver, Daniel P. (Inventor); Wang, Zhigang (Inventor).

    IPC No.: C12Q1/68. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  223. Published

    MHCcluster, a method for functional clustering of MHC molecules. / Thomsen, Martin Christen Frølund; Lundegaard, Claus; Buus, Søren; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 65, No. 9, 2013, p. 655-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  224. Published

    MicroRNA profiling in ocular adnexal lymphoma: a role for MYC and NFKB1 mediated dysregulation of microRNA expression in aggressive disease. / Hother, Christoffer; Rasmussen, Peter Kristian; Joshi, Tejal; Reker, Ditte; Ralfkiær, Ulrik; Workman, Christopher; Heegaard, Steffen; Ralfkiær, Elisabeth; Grønbæk, Kirsten.

    In: Investigative Ophthalmology & Visual Science, Vol. 54, No. 8, 2013, p. 5169-5175.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  225. Published

    MISTIC: mutual information server to infer coevolution. / Simonetti, Franco L.; Teppa, Elin; Chernomoretz, Ariel; Nielsen, Morten; Marino Buslje, Cristina.

    In: Nucleic Acids Research, Vol. 41, No. W1, 2013, p. 20W8-W14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  226. Published

    Molasses injection as a MEOR strategy: Enrichment incubations of brine/oil from North Sea Oil Field. / Halim, Amalia Yunita; Pedersen, Dorthe Skou; Eliasson Lantz, Anna; Nielsen, Sidsel Marie; Shapiro, Alexander.

    2013. Poster session presented at 4th International Symposium on Applied Microbiology and Molecular Biology in Oil Systems, Rio de Janeiro, Brazil.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  227. Published

    Molecular Biological basis for statin resistance in naturally statin-producing organisms. / Rems, Ana; Frandsen, Rasmus John Normand.

    2013. Poster session presented at 27th Fungal Genetics Conference , Asilomar, United States.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  228. Published

    Molecular signaling networks in regulation of immunity and disease. / Laursen, Janne Marie; Jensen, Stina Rikke; Sørensen, Morten; Pedersen, Susanne Brix.

    2013. Abstract from Copenhagen Bioscience Conference – Genomics in metabolism, Snekkersten, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  229. Published

    Monitoring Expansion of T Cell Specifities Against Foot-and-Mpouth-Disease Virus (FMDV) in Swine With MHC Class I Tetramers Following a Prime/Boost Vaccination. / Pedersen, Lasse Eggers; Patch, J.; Glabman, R.; Kenney, M.; Nielsen, Morten; Buus, S.; Jungersen, Gregers; Golde, W. T.

    10th International Veterinary Immunology Symposium - IVIS 2013. 2013. p. 72 CS05.5.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  230. Published

    Monitoring programmed cell death of living plant tissues in microfluidics using electrochemical and optical techniques. / Mark, Christina; Heiskanen, Arto; Svensson, Birte; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2013. Abstract from Plant Biotech Denmark Annual Meeting 2013, Frederiksberg, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  231. Published

    Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives. / Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren.

    In: Fungal Biology, Vol. 117, No. 1, 2013, p. 32-40.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  232. Published

    Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 Are Identified in Individuals with Congenital Hypogonadotropic Hypogonadism. / Miraoui, Hichem; Dwyer, Andrew A.; Sykiotis, Gerasimos P.; Plummer, Lacey; Chung, Wilson; Feng, Bihua; Beenken, Andrew; Clarke, Jeff; Pers, Tune Hannes; Dworzynski, Piotr; Keefe, Kimberley; Niedziela, Marek; Raivio, Taneli; Crowley, William F., Jr.; Seminara, Stephanie B.; Quinton, Richard; Hughes, Virginia A.; Kumanov, Philip; Young, Jacques; Yialamas, Maria A.; Hall, Janet E.; Van Vliet, Guy; Chanoine, Jean-Pierre; Rubenstein, John; Mohammadi, Moosa; Tsai, Pei-San; Sidis, Yisrael; Hansen, Kasper Lage; Pitteloud, Nelly.

    In: American Journal of Human Genetics, Vol. 92, No. 5, 2013, p. 725-743.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  233. Published

    NetFCM: A Tool for Automated Flow Cytometric Data Analysis. / Frederiksen, Juliet Wairimu; Lund, Ole; Buggert, M.; Karlsson, A.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 44, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  234. Published

    Nucleic Acid Aptamers as Novel Class of Therapeutics to Mitigate Alzheimer's Disease Pathology. / K. Tannenberg, Rudi; Al. Shamaileh, Hadi; Lauridsen, Lasse Holm; R. Kanwar, Jagat; R. Dodd, Peter; N. Veedu, Rakesh.

    In: Current Alzheimer Research, Vol. 10, No. 4, 2013, p. 442.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  235. Published

    Obesity-induced hepatic and placental inflammation are absent in obese gestating mice compared to control fed dams. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, Denise; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Abstract from 15th European Congress of Endocrinology 2013, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  236. Published

    Offspring from rat mothers fed a high-fat/high-sucrose diet during gestation and lactation accumulate free fatty acids in the liver when exposed to high fat diet as adults.. / Hellgren, Lars; Ingvorsen, Camilla.

    2013. Abstract from 11th Euro Fed Lipid Congress, Antalya, Turkey.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  237. Published

    One Fungus, One Name: Defining the Genus Fusarium in a Scientifically Robust Way That Preserves Longstanding Use.. / Geiser, David M.; Aoki, Takayuki; Bacon, Charles W.; E. Baker, Scott; Bhattacharyya, Madan K.; Brandt, Mary E.; Brown, Daren W. ; Burgess, Lester W. ; Chulze, Sofia ; Coleman, Jeffrey J. ; Correll, James C. ; Covert, Sarah F. ; Crous, Pedro W. ; Cuomo, Christina A.; Sybren De Hoog, G.; Di Pietro, Antonio; Elmer, Wade H. ; Epstein, Lynn; Frandsen, Rasmus John Normand; Freeman, Stanley; Gagkaeva, Tatiana; Glenn, Anthony E.; Gordon, Thomas R.; Gregory, Nancy F.; Hammond-Kosack, Kim E.; Hanson, Linda E. ; Jímenez-Gasco, María del Mar; Kang, Seogchan; Kistler, H. Corby ; Kuldau, Gretchen A.; Leslie, John F. ; Logrieco, Antonio; Lu, Guozhong; Lysøe, Erik; Ma, Li-Jun; P. McCormick, Susan; Migheli, Quirico; Moretti, Antonio; Munaut, Françoise; O'Donnell, Kerry; Pfenning, Ludwig; Ploetz, Randy C. ; Proctor, Robert H. ; Rehner, Stephen A. ; Robert, Vincent A. R. G. ; Rooney, Alejandro P. ; Salleh, Baharuddin bin ; Scandiani, Maria Mercedes ; Scauflaire, Jonathan; Short, Dylan P. G.; Steenkamp, Emma; Suga, Haruhisa; Summerell, Brett A. ; Sutton, Deanna A.; Thrane, Ulf; Trail, Francis; Diepeningen, Anne Van ; VanEtten, Hans D. ; Viljoen, Altus; Waalwijk, Cees; Ward, Todd J.; Wingfield, Michael J. ; Xu, Jin-Rong; Yang, Xiao-Bing ; Yli-Mattila, Tapani; Zhang, Ning.

    In: Phytopathology, Vol. 103, No. 5, 2013, p. 400-408.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  238. Published

    Overexpression of O‐methyltransferase leads to improved vanillin production in baker's yeast only when complemented with model‐guided network engineering. / Brochado, Ana Rita; Patil, Kiran R.

    In: Biotechnology and Bioengineering, Vol. 110, No. 2, 2013, p. 656-659.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  239. Published
  240. Published

    Parallel evolution of tumor subclones mimics diversity between tumors. / Martinez, Pierre; Birkbak, Nicolai Juul; Gerlinger, Marco; McGranahan, Nicholas; Burrell, Rebecca; Rowan, Andrew; Joshi, Tejal; Fisher, Rosalie; Larkin, James; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Journal of Pathology, Vol. 230, No. 4, 2013, p. 356-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  241. Published

    PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.. / Cosentino, Salvatore; Larsen, Mette Voldby; Aarestrup, Frank Møller; Lund, Ole.

    In: PloS one., Vol. 8, No. 10, 2013, p. e77302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  242. Published

    Pathogenic bacteria colonizing the airways in asymptomatic neonates stimulates topical inflammatory mediator release.. / Følsgaard, Nilofar Vahman; Schjørring, Susanne; Chawes, Bo Lund Krogsgaard; Rasmussen, Morten; Krogfelt, Karen Angeliki; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: American Journal of Respiratory and Critical Care Medicine, Vol. 187, No. 6, 2013, p. 589-595.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  243. Published

    Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes. / Alsmark, Cecilia; Foster, Peter G; Sicheritz-Pontén, Thomas; Nakjang, Sirintra; Martin Embley, T; Hirt, Robert P.

    In: Genome Biology, Vol. 14, No. 2, 2013, p. R19.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  244. Published

    Penicillium subrubescens, a new species efficiently producing inulinase. / Mansouri, S.; Houbraken, J.; Samson, R.A.; Frisvad, Jens Christian; Christensen, M.; Tuthill, D. E.; Koutaniemi, S.; Hatakka, A.; Lankinen, P.

    In: Antonie van Leeuwenhoek, Vol. 103, No. 6, 2013, p. 1343-1357.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  245. Published

    Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles. / Mothé, Bianca R.; Southwood, Scott; Sidney, John; English, A. Michelle; Wriston, Amanda; Hoof, Ilka; Shabanowitz, Jeffrey; Hunt, Donald F.; Sette, Alessandro.

    In: Immunogenetics, Vol. 65, No. 5, 2013, p. 371-386.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  246. Published

    Peptide binding motifs associated with mhc molecules common in chinese rhesus macaques are analogous to those of human hla supertypes, and include hla-b27-like alleles associated with elite controller status. / Mothe, Bianca R.; Southwood, Scott; Sidney, John; English, Michelle A.; Wriston, Amanda; Hoof, Ilka; Shabanowitz, Jeffrey; Hunt, Donald F.; Sette, Alessandro.

    In: Journal of Medical Primatology, Vol. 42, No. 5, 2013, p. 270-271.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  247. Published

    Perinatal programming of metabolic dysfunction and obesity-induced inflammation. / Ingvorsen, Camilla; Hellgren, Lars; Pedersen, Susanne Brix.

    Kgs. Lyngby : Technical University of Denmark, 2013. 184 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  248. E-pub ahead of print
  249. Published

    PHAISTOS : A framework for Markov chain Monte Carlo simulation and inference of protein structure. / Boomsma, Wouter; Frellsen, Jes; Harder, Tim; Bottaro, Sandro; Johansson, Kristoffer E.; Tian, Pengfei; Stovgaard, Kasper; Andreetta, Christian; Olsson, Simon; Valentin, Jan B.; Antonov, Lubomir D.; Christensen, Anders; Borg, Mikael; Jensen, Jan H.; Lindorff‐Larsen, Kresten; Ferkinghoff-Borg, Jesper; Hamelryck, Thomas.

    In: Journal of Computational Chemistry, Vol. 34, No. 19, 2013, p. 1697-1705.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  250. Published

    Pharmacological profiling of drugs by linking chemoinformatics and bioinformatics data. / Taboureau, Olivier .

    In: Abstracts of Papers of the American Chemical Society, Vol. 245, 71-CINF, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  251. Published

    Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. / O’Donnell, Kerry; Rooney, Alejandro P.; Proctor, Robert H.; Brown, Daren W.; McCormick, Susan P.; Ward, Todd J.; Frandsen, Rasmus John Normand; Lysøe, Erik; Rehner, Stephen A.; Aoki, Takayuki; Robert, Vincent A.R.G.; Crous, Pedro W.; Groenewald, Johannes Z.; Kang, Seogchan; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 52, 2013, p. 20-31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  252. Published

    Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.. / Short, Dylan P.G.; O’Donnell, Kerry; Thrane, Ulf; Nielsen, Kristian Fog; Zhang, Ning; Juba, Jean H.; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 53, 2013, p. 59-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  253. Published

    Phytanic acid stimulates glucose uptake in a model of skeletal muscles, the primary porcine myotubes. / Che, Brita Ngum; Oksbjerg, Niels; Hellgren, Lars; Nielsen, Jacob H; Young, Jette F.

    In: Lipids in Health and Disease, Vol. 12, No. 1, 2013, p. 14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  254. Published

    Polymorphism in the fatty acid desaturase genes and diet are important determinants of infant n-3 fatty acid status.. / Harsløf, L.B.S.; Larsen, L.H.; Ritz, C.; Michaelsen, K.F.; Hellgren, Lars; Vogel, U.; Lauritzen, L.

    2013. Abstract from IUNS 20th International Congress of Nutrition, Granada, Spain.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  255. Published

    Polymorphisms in the fatty acid desaturase genes and diet are important determinants of infant docosahexaenoic acid status. / Lauritzen, L.; Harsløf, L.; Larsen, L.H.; Ritz, C.; Hellgren, Lars; Michaelsen, K. F.; Vogel, U.

    In: Annals of Nutrition and Metabolism, Vol. 63, No. Suppl. 1, PO133, 2013, p. 320-321.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  256. Published

    Postnatal amniotic fluid intake reduces gut inflammatory responses and necrotizing enterocolitis in preterm neonates. / Siggers, Jayda; Østergaard, Mette V.; Siggers, Richard H.; Skovgaard, Kerstin; Mølbak, Lars; Thymann, Thomas; Schmidt, Mette; Møller, Hanne Kristine; Purup, Stig; Fink, Lisbeth Nielsen; Frøkiær, Hanne; Boye, Mette; Sangild, Per T.; Bering, Stine B.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 304, No. 10, 2013, p. G864-G875.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  257. Published

    Pre- and early-postnatal nutrition modify gene and protein expressions of muscle energy metabolism markers and phospholipid fatty acid composition in a muscle type specific manner in sheep.. / Hou, Lei; Kongsted, Alice; Ghoreishi, S. M.; Takhtsabzy, T. K.; Friedrichsen, Martin; Hellgren, Lars; Kadarmideen, Haja; Vaag, Allan; Nielsen, Mette O.

    In: PLoS ONE, Vol. 8, No. 6, 2013, p. e65452 .

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  258. Published

    Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology. / Steentoft, Catharina; Vakhrushev, Sergey; Joshi, Hiren Jitendra; Kong, Yun; Vester-Christensen, Malene B; Schjoldager, Katrine T-B G; Lavrsen, Kirstine; Dabelsteen, Sally Anne Malene; Pedersen, Nis Borbye; Marcos-Silva, Lara; Gupta, Ramneek; Paul Bennett, Eric; Mandel, Ulla; Brunak, Søren; Wandall, Hans H.; Levery, Steven Bruce; Clausen, Henrik.

    In: EMBO Journal, Vol. 32, No. 10, 2013, p. 1478-1488.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  259. Published
  260. Published

    Prediction of the prognosis of breast cancer in routine histologic specimens using a simplified, low-cost gene expression signature. / Marcell, S.A.; Balazs, A.; Emese, A.; Zsofia, S.; Anna-Maria, T.; Liliana, S.; Borbala, S.; Miklos, S.; Li, Qiyuan; Laszlo, H.

    In: Orvosi Hetilap, Vol. 154, No. 16, 2013, p. 627-632.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  261. Published

    Predictions of Phase Separation in Three-Component Lipid Membranes by the MARTINI Force Field. / Davis, Ryan S.; Sunil Kumar, P. B.; Sperotto, Maria Maddalena; Laradji, Mohamed.

    In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, Vol. 117, 2013, p. 4072-4080.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  262. Published

    Production of fusarielins by Fusarium. / Sørensen, Jens Laurids; Akk, Elina; Thrane, Ulf; Giese, Henriette; Sondergaard, Teis Esben.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 206-211.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  263. Published

    Prognostic and Predictive Markers in Metastatic Renal Cell Carcinoma. / Khattak, Muhammad A.; Bakr, Farrah; Krzystanek, Marcin; Szallasi, Zoltan Imre; Gerlinger, Marco; Santos, Claudio; Swanton, Charles; Pickering, Lisa M.; Gore, Martin E.; Larkin, James M.G.

    In: Journal of Clinical Oncology, Vol. 31, No. 7, 2013, p. 20971-972.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  264. Published

    Protection of cod larvae from vibriosis by Phaeobacter spp.: A comparison of strains and introduction times. / D'Alvise, Paul; Lillebø, Siril; Wergeland, Heidrun I.; Gram, Lone; Bergh, Øivind.

    In: Aquaculture, Vol. 384-387, 2013, p. 82-86.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  265. Published

    PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development. / Martin, Sarah F.; Falkenberg, Heiner; Dyrlund, Thomas Franck; Khoudoli, Guennadi A.; Mageean, Craig J.; Linding, Rune.

    In: Journal of Proteomics, Vol. 88, 2013, p. 41-46.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  266. Published

    Proteome Regulation during Olea europaea Fruit Development. / Bianco, Linda; Alagna, Fiammetta; Baldoni, Luciana; Finnie, Christine; Svensson, Birte; Perrotta, Gaetano.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e53563.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  267. Published

    Pseudomonas aeruginosa adaptation to lungs of cystic fibrosis patients leads to lowered resistance to phage and protist enemies.. / Friman, Ville-Petri; Ghoul, Melanie; Molin, Søren; Johansen, Helle Krogh; Buckling, Angus.

    In: PloS one., Vol. 8, No. 9, 2013, p. e75380.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  268. Published

    Real-Time Metabolomics on Living Microorganisms Using Ambient Electrospray Ionization Flow-Probe. / Hsu, Cheng-Chih; ElNaggar, Mariam S.; Peng, Yao; Fang, Jinshu; Sanchez, Laura M.; Mascuch, Samantha J.; Møller, Kirsten Amalie; Alazzeh, Emad K.; Pikula, Jiri; Quinn, Robert A.; Zeng, Yi; Wolfe, Benjamin E.; Dutton, Rachel J.; Gerwick, Lena; Zhang, Lixin; Liu, Xueting; Månsson, Maria; C. Dorrestein, Pieter.

    In: Analytical Chemistry, Vol. 85, No. 15, 2013, p. 7014-7018.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  269. Published

    Real-Time WGS-based Typing of VTEC Isolates for Surveillance and Outbreak Detection. / Joensen, Katrine Grimstrup; Hasman, Henrik; Scheutz, F.; Nielsen, E. M.; Lund, Ole; Aarestrup, Frank Møller.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 209.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  270. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.. / Orlando, Ludovic Antoine Alexandre; Ginolhac, Aurélien; Zhang, Guojie; Froese, Duane; Albrechtsen, Anders; Stiller, Mathias; Schubert, Mikkel; Cappellini, Enrico; Petersen, Bent; Moltke, Ida; Johnson, Philip L F; Fumagalli, Matteo; Vilstrup, Julia T; Raghavan, Maanasa; Korneliussen, Thorfinn Sand; Malaspinas, Anna Sapfo; Vogt, Josef Korbinian; Szklarczyk, Damian; Kelstrup, Christian; Vinther, Jakob; Dolocan, Andrei; Stenderup, Jesper; Velazquez, Amhed M V; Cahill, James; Rasmussen, Morten; Wang, Xiaoli; Min, Jiumeng; Zazula, Grant D; Seguin-Orlando, Andaine; Mortensen, Cecilie; Magnussen, Kim; Thompson, John F; Weinstock, Jacobo; Gregersen, Magnus Kristian; Røed, Knut H; Eisenmann, Véra; Rubin, Carl J; Miller, Donald C; Antczak, Douglas F; Bertelsen, Mads; Brunak, Søren; Al-Rasheid, Khaled A S; Ryder, Oliver; Andersson, Leif; Mundy, John; Krogh, Anders; Gilbert, Marcus Thomas Pius; Kjær, Kurt H.; Sicheritz-Pontén, Thomas; Jensen, Lars Juhl; Olsen, Jesper; Hofreiter, Michael; Nielsen, Rasmus; Shapiro, Beth; Wang, Jun; Willerslev, Eske.

    In: Nature, Vol. 499, 2013, p. 74-78.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  271. Published

    Recent development of phosphorylases possessing large potential for oligosaccharide synthesis. / Nakai, Hiroyuki; Kitaoka, Motomitsu; Svensson, Birte; Ohtsubo, Ken’ichi.

    In: Current Opinion in Chemical Biology, Vol. 17, No. 2, 2013, p. 301-309.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  272. Published

    Recent insight into oligosaccharide uptake and metabolism in probiotic bacteria. / Abou Hachem, Maher ; Andersen, Joakim Mark; Barrangou, Rodolphe; Møller, Marie Sofie; Fredslund, Folmer; Majumder, Avishek; Hansen, Morten Ejby; Lahtinen, Sampo J.; Jacobsen, Susanne; Lo Leggio, Leila; Goh, Yong Jun; Klaenhammer, Todd R.; Svensson, Birte.

    In: Biocatalysis and Biotransformation, Vol. 31, No. 4, 2013, p. 226-235.

    Publication: Research - peer-reviewConference article – Annual report year: 2013

  273. Published

    Recombinant thermostable AP exonuclease from Thermoanaerobacter tengcongensis: cloning, expression, purification, properties and PCR application.. / Dabrowski, Slawomir; Brillowska-Dabrowska, Anna; Ahring, Birgitte Kiær.

    In: Polish Journal of Microbiology, Vol. 62, No. 2, 2013, p. 121-129.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  274. Published

    Reconstructing the highly virulent Classical Swine Fever Virus strain Koslov. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Nielsen, Jens; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    2013. Abstract from SMBE 2013 – Annual Meeting of the Society for Molecular Biology and Evolution, Chicago, IL, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  275. Published
  276. Published

    Regulatory Coordination between Two Major Intracellular Homeostatic Systems : Heat shock response and autophagy. / Dokladny, Karol; Zuhl, Micah Nathaniel; Mandell, Michael; Bhattacharya, Dhruva; Schneider, Suzanne; Deretic, Vojo; Moseley, Pope.

    In: Journal of Biological Chemistry, Vol. 288, No. 21, 2013, p. 14959-14972.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  277. Published

    Relationship between fumonisin production and FUM gene expression in Fusarium verticillioides under different environmental conditions. / Fanelli, Francesca; Iversen, Anita; Logrieco, Antonio F.; Mulè, Giuseppina.

    In: Food Additives & Contaminants: Part A - Chemistry, Analysis, Control, Exposure & Risk Assessment, Vol. 30, No. 2, 2013, p. 365-371.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  278. Published
  279. Published

    Reply to 'Mining electronic health records: an additional perspective'. / Jensen, Peter B.; Jensen, Lars J.; Brunak, Søren.

    In: Nature Reviews. Genetics, Vol. 14, No. 1, 2013, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  280. Published

    Rewiring Lactococcus lactis for Ethanol Production. / Solem, Christian; Dehli, Tore Ibsen; Jensen, Peter Ruhdal.

    In: Applied and Environmental Microbiology, Vol. 79, No. 8, 2013, p. 2512-2518.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  281. Published

    Richness of human gut microbiome correlates with metabolic markers.. / Le Chatelier, Emmanuelle; Nielsen, Trine; Qin, Junjie; Prifti, Edi; Hildebrand, Falk; Falony, Gwen; Almeida, Mathieu; Arumugam, Manimozhiyan; Batto, Jean-Michel; Kennedy, Sean; Leonard, Pierre; Li, Junhua; Burgdorf, Kristoffer; Grarup, Niels; Jørgensen, Torben; Brandslund, Ivan; Nielsen, Henrik Bjørn; Juncker, Agnieszka; dos Santos, Marcelo Bertalan Quintanilha; Levenez, Florence; Pons, Nicolas; Rasmussen, Simon; Sunagawa, Shinichi; Tap, Julien; Tims, Sebastian; Zoetendal, Erwin G; Brunak, Søren; Clément, Karine; Doré, Joël; Kleerebezem, Michiel; Kristiansen, Karsten; Renault, Pierre; Sicheritz-Pontén, Thomas; de Vos, Willem M.; Zucker, Jean-Daniel; Raes, Jeroen; Hansen, Torben; Bork, Peer; Wang, Jun; Ehrlich, S Dusko; Pedersen, Oluf.

    In: Nature, Vol. 500, No. 7464, 2013, p. 541-546.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  282. Published

    RNA-seq based expression analysis of the CHO cell protein secretion pathway. / Lund, Anne Mathilde; Kaas, Christian Schrøder; Kildegaard, Helene Faustrup; Kristensen, Claus; Andersen, Mikael Rørdam.

    2013. Poster session presented at 3rd Annual Next Generation Sequencing Asia Congress, Singapore, Singapore.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  283. Published

    Role of Snf3 in glucose homeostasis of Saccharomyces cerevisiae (review). / Kielland-Brandt, Morten.

    2013. Abstract from 31st Small Meeting on Yeast Transport and Energetics (SMYTE 31), Antalya, Turkey.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  284. Published

    Saccharomyces cerevisiae–Based Platform for Rapid Production and Evaluation of Eukaryotic Nutrient Transporters and Transceptors for Biochemical Studies and Crystallography. / Scharff-Poulsen, Peter; Pedersen, Per Amstrup.

    In: P L o S One, Vol. 8, No. 10, e76851, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  285. Published

    Scientific competency questions as the basis for semantically enriched open pharmacological space development. / Azzaoui, Kamal; Jacoby, Edgar; Senger, Stefan; Rodríguez, Emiliano Cuadrado; Loza, Mabel; Zdrazil, Barbara; Pinto, Marta; Williams, Antony J.; de la Torre, Victor; Mestres, Jordi; Pastor, Manuel; Taboureau, Olivier ; Rarey, Matthias; Chichester, Christine; Pettifer, Steve; Blomberg, Niklas; Harland, Lee; Williams-Jones, Bryn; Ecker, Gerhard F.

    In: Drug Discovery Today, Vol. 18, No. 17-18, 2013, p. 843-852.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  286. Published

    Screening the Biosphere: The Fungicolous Fungus Trichoderma phellinicola, a Prolific Source of Hypophellins, New 17-, 18-, 19-, and 20-Residue Peptaibiotics. / Röhrich, Christian René ; Iversen, Anita; Jaklitsch, Walter Michael; Voglmayr, Hermann; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; Döhren, Hans von ; Brückner, Hans; Degenkolb, Thomas.

    In: Chemistry & Biodiversity, Vol. 10, 2013, p. 787-812.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  287. Published

    Selection of protective antigens in Lawsonia intracellularis by reverse vaccinology. / Vadekær, Dorte Fink; Lundegaard, Claus; Riber, Ulla; Jungersen, Gregers.

    2013. Abstract from 10th International Veterinary Immunology Symposium, Milano, Italy.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  288. Published

    Selectivity in the potentiation of antibacterial activity of α-peptide/β-peptoid peptidomimetics and antimicrobial peptides by human blood plasma. / Hein-Kristensen, Line; Knapp, Kolja M.; Franzyk, Henrik; Gram, Lone.

    In: Research in Microbiology, Vol. 164, No. 9, 2013, p. 933-940.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  289. Published

    Sigma factors in a thousand E. coli genomes. / Cook, Helen Victoria; Ussery, David.

    In: Environmental Microbiology, Vol. 15, No. 12, 2013, p. 3121-3129.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  290. Published

    SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments. / Jessen, Leon Ivar; Hoof, Ilka; Lund, Ole; Nielsen, Morten.

    In: Nucleic Acids Research, Vol. 41, No. W1, 2013, p. 20W286-W291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  291. Published

    Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach. / Andreatta, Massimo; Lund, Ole; Nielsen, Morten.

    In: Bioinformatics, Vol. 29, No. 1, 2013, p. 8-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  292. Published

    Small chromosomes among Danish Candida glabrata isolates originated through different mechanisms. / Ahmad, Khadija Mohamed; Ishchuk, Olena P.; Hellborg, Linda; Jørgensen, Gloria Pereira; Skvarc, Miha; Stenderup, Jørgen; Jørck-Ramberg, Dorte; Polakova, Silvia; Piškur, Jure.

    In: Antonie van Leeuwenhoek, Vol. 104, No. 1, 2013, p. 111-122.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  293. Published
  294. Submitted

    Stochastic Differential Equations in Artificial Pancreas Modelling. / Duun-Henriksen, Anne Katrine; Madsen, Henrik (Main supervisor); Jensen, Peter Ruhdal (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 200 p. (PHD-2013; No. 308).

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  295. Published

    Structural analysis of B-cell epitopes in antibody:protein complexes. / Kringelum, Jens Vindahl; Nielsen, Morten; Padkjær, Søren Berg; Lund, Ole.

    In: Molecular Immunology, Vol. 53, No. 1-2, 2013, p. 24-34.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  296. Published

    Structural basis for arabinoxylo‐oligosaccharide capture by the probiotic Bifidobacterium animalis subsp. lactis Bl‐04. / Hansen, Morten Ejby; Fredslund, Folmer; Vujicic‐Zagar, Andreja; Svensson, Birte; Slotboom, Dirk Jan; Abou Hachem, Maher .

    In: Molecular Microbiology, Vol. 90, No. 5, 2013, p. 1100-1112.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  297. Published

    Structure, function and protein engineering in starch debranching enzyme systems. Barley limit dextrinase and its endogenous inhibitor. / Møller, Marie Sofie; Abou Hachem, Maher (Supervisor); Svensson, Birte (Main supervisor); Henriksen, Anette (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 163 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  298. Published

    Sublethal Ciprofloxacin Treatment Leads to Rapid Development of High-Level Ciprofloxacin Resistance during Long-Term Experimental Evolution of Pseudomonas aeruginosa. / Jørgensen, Karin Meinike; Wassermann, Tina; Jensen, Peter Østrup; Hengzuang, Wang; Molin, Søren; Høiby, Niels; Ciofu, Oana.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 9, 2013, p. 4215-4221.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  299. Published

    Supercluster takes a walk on the wild side. / Nielsen, Jakob Blæsbjerg; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    In: Trends in Microbiology, Vol. 21, No. 12, 2013, p. 617-618.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  300. Published

    Surface binding sites (SBSs), mechanism and regulation of enzymes degrading amylopectin and α-limit dextrins.. / Møller, Marie Sofie; Cockburn, Darrell; Nielsen, Jonas W.; Jensen, Johanne M.; Vester-Christensen, Malene B.; Nielsen, Morten Munch; Andersen, Joakim Mark; Wilkens, Casper; Rannes, Julie Bille; Hägglund, Per; Henriksen, Anette; Abou Hachem, Maher ; Willemoës, Martin; Svensson, Birte.

    In: Journal of Applied Glycoscience, Vol. 60, No. 2, 2013, p. 101-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  301. Published

    Survival of Bactericidal Antibiotic Treatment by a Persister Subpopulation of Listeria monocytogenes. / Knudsen, Gitte Maegaard; Ng, Yin; Gram, Lone.

    In: Applied and Environmental Microbiology, Vol. 79, No. 23, 2013, p. 207390-7397.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  302. Published

    Synthesis and biological evaluation of novel benzyl-substituted (S)-phenylalanine derivatives as potent dipeptidyl peptidase 4 inhibitors. / Liu, Yang; Si, Meimei; Tang, Li; Shangguan, Shihao; Wu, Haoshu; Li, Jia; Wu, Peng; Ma, Xiaodong; Liu, Tao; Hu, Yongzhou.

    In: Bioorganic & Medicinal Chemistry, Vol. 21, No. 18, 2013, p. 5679-5687.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  303. Published
  304. Published

    Talaromyces atroroseus, a new species efficiently producing industrially relevant red pigments. / Frisvad, Jens Christian; Yilmaz, Neriman; Thrane, Ulf; Rasmussen, Kasper Bøwig; Houbraken, Jos; Samson, Robert A.

    In: P L o S One, Vol. 8, No. 12, e84102, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  305. Published

    Targeted Metabolic Engineering Guided by Computational Analysis of Single-Nucleotide Polymorphisms (SNPs).. / Udatha, D B R K Gupta; Rasmussen, Simon; Sicheritz-Pontén, Thomas; Panagiotou, Gianni.

    Systems Metabolic Engineering : Methods and Protocols. Springer Science+Business Media B.V., 2013. (Methods in Molecular Biology, Vol. 985).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  306. Published

    Targeting of conserved gag-epitopes in early HIV infection is associated with lower plasma viral load and slower CD4(+) T cell depletion.. / Perez, Carina L. ; Milush, Jeffrey M. ; Buggert, Marcus; Eriksson, Emily M. ; Larsen, Mette Voldby; Liegler, Teri; Hartogensis, Wendy; Bacchetti, Peter; Lund, Ole; Hecht, Frederick M. ; Nixon, Douglas F. ; Karlsson, Annika C. .

    In: AIDS Research and Human Retroviruses, Vol. 29, No. 3, 2013, p. 602-612.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  307. Published

    Taxonomy and antifungal susceptibility of clinically important Rasamsonia species. / Houbraken, J.; Giraud, S.; Meijer, M.; Bertout, S.; Frisvad, Jens Christian; Meis, J.F.; Bouchara, J.P.; Samson, R.A.

    In: Journal of Clinical Microbiology, Vol. 51, No. 1, 2013, p. 22-30.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  308. Published

    Temporal variability in urinary phthalate metabolite excretion based on spot, morning, and 24-h urine samples: Considerations for epidemiological studies. / Frederiksen, Hanne; Kranich, Selma K.; Jørgensen, Niels; Taboureau, Olivier ; Petersen, Jørgen H.; Andersson, Anna-Maria.

    In: Environmental Science and Technology, Vol. 47, No. 2, 2013, p. 958-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  309. Published

    The antimicrobial lysine-peptoid hybrid LP5 inhibits DNA replication and induces the SOS response in Staphylococcus aureus. / Gottschalk, Sanne; Ifrah, Dan; Lerche, Sandra; Gottlieb, Caroline Trebbien; Cohn, Marianne T; Hiasa, Hiroshi; Hansen, Paul R; Gram, Lone; Ingmer, Hanne; Thomsen, Line Elnif.

    In: BMC Microbiology, Vol. 13, No. 1, 192, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  310. Published

    The barley grain thioredoxin system - an update.. / Hägglund, Per; Björnberg, Olof; Navrot, Nicolas; Mørch Jensen, Johanne; Maeda, Kenji; Kirkensgaard, Kristine Groth; Shahpiri, Azar; Sultan, Abida; Bunkenborg, Jakob; Gubler, Frank; Barrero, José Maria; Henriksen, Anette; Finnie, Christine; Svensson, Birte.

    In: Frontiers in Plant Science, Vol. 4, 2013, p. 151.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  311. Published

    The biodiversity of Aspergillus section Flavi in brazil nuts: From rainforest to consumer. / Calderari, Thaiane O.; Iamanaka, Beatriz T.; Frisvad, Jens Christian; Pitt, John I.; Sartori, Daniele; Pereira, Jose Luiz; Fungaro, Maria Helena P.; Taniwaki, Marta H.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 267-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  312. Published
  313. Published

    The CIN4 chromosomal instability qPCR classifier defines tumor aneuploidy and stratifies outcome in grade 2 breast cancer.. / Szász, Attila Marcell; Li, Qiyuan; Eklund, Aron Charles; Sztupinszki, Zsófia; Rowan, Andrew; Tőkés, Anna-Mária; Székely, Borbála; Kiss, András; Szendrői, Miklós; Győrffy, Balázs; Szallasi, Zoltan Imre; Swanton, Charles; Kulka, Janina.

    In: PloS one., Vol. 8, No. 2, 2013, p. e56707.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  314. Published

    The Effect of Bacteria Penetration on Chalk Permeability. / Halim, Amalia Yunita; Shapiro, Alexander; Nielsen, Sidsel Marie; Eliasson Lantz, Anna.

    2013. Abstract from 75th EAGE Conference & Exhibition incorporating SPE EUROPEC 2013, London, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  315. Published

    The Effect of Nanosilver on Pigments Production by Fusarium culmorum (W. G. Sm.) Sacc.. / Kasprowicz, Marek J.; Gorczyca, Anna; Frandsen, Rasmus John Normand.

    In: Polish Journal of Microbiology, Vol. 62, No. 4, 2013, p. 365-372.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  316. Published

    The effect of network biology on drug toxicology.. / Gautier, Laurent; Taboureau, Olivier ; Audouze, Karine Marie Laure.

    In: Expert Opinion on Drug Metabolism & Toxicology, Vol. 9, No. 11, 2013, p. 1409-1418.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  317. Published

    The impact of different ale brewer’s yeast strains on the proteome of immature beer. / Berner, Torben Sune; Jacobsen, Susanne; Arneborg, Nils.

    In: BMC Microbiology, Vol. 13, No. 1, 2013, p. 215.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  318. Published

    The Lactococcus lactis Thioredoxin System. / Efler, Petr; Hägglund, Per (Supervisor); Svensson, Birte (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2013. 146 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  319. Published

    The phosphopantetheinyl transferases: catalysis of a post-translational modification crucial for life. / Beld, Joris; Sonnenschein, Eva; Vickery, Christopher R.; Noel, Joseph P.; Burkart, Michael D.

    In: Natural Product Reports, Vol. 31, No. 1, 2013, p. 61-108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  320. Published

    The piRNAs forge an immune system for the genome. / Muller, Sébastian; Pandey, R.R.; Pillai, R.S.

    In: Medecine Sciences, Vol. 29, No. 5, 2013, p. 487-494.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  321. Published

    The putative thiosulfate sulfurtransferases PspE and GlpE contribute to virulence of Salmonella Typhimurium in the mouse model of systemic disease.. / Wallrodt, Inke; Jelsbak, Lotte; Thorndahl, Lotte; Thomsen, Line Elnif; Lemire, Sebastien; Olsen, John E.

    In: PLoS ONE, Vol. 8, No. 8, e70829, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  322. Published
  323. Published

    The SH2 Domain Interaction Landscape. / Tinti, Michele; Kiemer, Lars; Costa, Stefano; Miller, Martin Lee; Sacco, Francesca; Olsen, Jesper; Carducci, Martina; Paoluzi, Serena; Langone, Francesca; Workman, Christopher; Blom, Nikolaj; Machida, Kazuya; Thompson, Christopher M.; Schutkowski, Mike; Brunak, Søren; Mann, Matthias; Mayer, Bruce J.; Castagnoli, Luisa; Cesareni, Gianni.

    In: Cell Reports, Vol. 3, No. 4, 2013, p. 1293-1305.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  324. Published
  325. Published

    The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk. / de Jong, Anne; Hansen, Morten Ejby; Kuipers, Oscar P.; Kilstrup, Mogens; Kok, Jan.

    In: P L o S One, Vol. 8, No. 1, 2013, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  326. Published

    The Transcriptional Repressor TupA in Aspergillus niger Is Involved in Controlling Gene Expression Related to Cell Wall Biosynthesis, Development, and Nitrogen Source Availability.. / Schachtschabel, Doreen; Arentshorst, Mark; Nitsche, Benjamin M; Morris, Sam; Nielsen, Kristian Fog; van den Hondel, Cees A M J J; Klis, Frans M; Ram, Arthur F J.

    In: PloS one., Vol. 8, No. 10, 2013, p. e78102.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  327. Published

    Time dependent physiological characterization of yeast oxidative stress response and growth modulation of protein kinase/phosphatase mutants. / Altintas, Ali; Workman, Christopher.

    In: Yeast, Vol. 30, No. S1, 2013, p. 156-156.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  328. Published

    TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells. / Hekmat, Omid; Munk, Stephanie; Fogh, Louise; Yadav, Rachita; Francavilla, Chiara; Horn, Heiko; Wurtz, Sidse Ornbjerg; Schrohl, Anne-Sofie; Damsgaard, Britt; Romer, Maria Unni; Belling, Kirstine C.; Jensen, Niels Frank; Gromova, Irina; Bekker-Jensen, Dorte B; Moreira, Jose Manuel Matos; Jensen, Lars Juhl; Gupta, Ramneek; Lademann, Ulrik; Brunner, Nils; Olsen, Jesper; Stenvang, Jan.

    In: Journal of Proteome Research, Vol. 12, No. 9, 2013, p. 4136–4151.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  329. Published

    TIMP1 overexpression mediates resistance of MCF-7 human breast cancer cells to fulvestrant and down-regulates progesterone receptor expression. / Bjerre, Christina; Vinther, Lena; Belling, Kirstine C.; Würtz, Sidse Ø.; Yadav, Rachita; Lademan, Ulrik; Rigina, Olga; Nguyen Do, Khoa; Ditzel, Henrik Jørn; Lykkesfeldt, Anne Elisabeth; Wang, Jun; Nielsen, Henrik Bjørn; Brünner, Nils; Gupta, Ramneek; Schrohl, Anne-Sofie; Stenvang, Jan.

    In: Tumor Biology, Vol. 34, 2013, p. 3839-3851.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  330. Published

    Transcriptional analysis of oligosaccharide utilization by Bifidobacterium lactis Bl-04. / Andersen, Joakim Mark; Barrangou, Rodolphe; Abou Hachem, Maher ; Lahtinen, Sampo J.; Goh, Yong Jun; Svensson, Birte; Klaenhammer, Todd R.

    In: BMC Genomics, Vol. 14, No. 1, 312, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  331. Published

    Transcriptional regulation and steady-state modeling of metabolic networks. / Zelezniak, Aleksej; Kielland-Brandt, Morten (Main supervisor); Patil, Kiran Raosaheb (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 152 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  332. Published

    Transcriptome profiling of mice testes following low dose irradiation. / Belling, Kirstine C.; Tanaka, Masami; Dalgaard, Marlene Danner; Nielsen, John Erik; Nielsen, Henrik Bjørn; Brunak, Søren; Almstrup, Kristian; Leffers, Henrik.

    In: Reproductive Biology and Endocrinology, Vol. 11, No. 1, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  333. Published

    Transcriptome Responses to Combinations of Stresses in Arabidopsis. / Rasmussen, Simon; Barah, Pankaj; Suarez-Rodriguez, Maria Cristina; Bressendorff, Simon; Friis, Pia; Costantino, Paolo; Bones, Atle M.; Nielsen, Henrik Bjørn; Mundy, John.

    In: Plant Physiology, Vol. 161, No. 4, 2013, p. 1783-1794.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  334. Published

    Tumor Mutation Burden Forecasts Outcome in Ovarian Cancer with BRCA1 or BRCA2 Mutations. / Birkbak, Nicolai Juul; Kochupurakkal, Bose; Gonzalez-Izarzugaza, Jose Maria; Eklund, Aron Charles; Li, Yang; Liu, Joyce; Szallasi, Zoltan Imre; Matulonis, Ursula A. ; Richardson, Andrea L. ; Iglehart, J. Dirk ; Wang, Zhigang C.

    In: P L o S One, Vol. 8, No. 11, e80023, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  335. Published

    Two new Penicillium species Penicillium buchwaldii and Penicillium spathulatum, producing the anticancer compound asperphenamate.. / Frisvad, Jens Christian; Houbraken, Jos; Popma, Suuske; Samson, Robert A.

    In: F E M S Microbiology Letters, Vol. 339, No. 2, 2013, p. 77-92.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  336. Published

    Typing of Pseudomonas aeruginosa from hemorrhagic pneumonia in mink (Neovison vison). / Salomonsen, Charlotte Mark; Themudo, G. E.; Jelsbak, Lars; Molin, Søren; Høiby, N.; Hammer , Anne Sofie .

    In: Veterinary Microbiology, Vol. 163, No. 1-2, 2013, p. 103-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  337. Published
  338. E-pub ahead of print

    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.. / Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.; Metspalu, Mait; Albrechtsen, Anders; Moltke, Ida; Rasmussen, Simon; Stafford jr., Thomas; Orlando, Ludovic Antoine Alexandre; Metspalu, Ene; Karmin, Monika; Tambets, Kristiina; Rootsi, Siiri; Mägi, Reedik; Campos, Paula; Balanovska, Elena; Balanovsky, Oleg; Khusnutdinova, Elza; Litvinov, Sergey; Osipova, Ludmila P; Fedorova, Sardana A; Voevoda, Mikhail I; Degiorgio, Michael; Sicheritz-Pontén, Thomas; Brunak, Søren; Demeshchenko, Svetlana; Kivisild, Toomas; Villems, Richard; Nielsen, Rasmus; Jakobsson, Mattias; Willerslev, Eske.

    In: Nature, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  339. Published

    Use of collateral sensitivity networks to design drug cycling protocols that avoid resistance development.. / Imamovic, Lejla; Sommer, Morten.

    In: Science Translational Medicine, Vol. 5, No. 204, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  340. Published

    Using microfluidics to study programmed cell death: A new approach. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Svensson, Birte; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2013. Abstract from 25th Congress of the Scandinavian Plant Physiology Society, Helsingør, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  341. Published

    Using microfluidics to study programmed cell death: A new approach. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Svensson, Birte; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2013. Abstract from 9th Protein.DTU Workshop, Kgs. Lyngby, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  342. Published

    VAR2CSA Epitope Identification - Finding All the Needles in All the Haystacks. / Jessen, L. E.; Ditlev, S. B.; Schafer-Nielsen, C.; Buus, S.; Salanti, A.; Lund, Ole.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 318-319.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  343. Published

    Veillonella, Firmicutes: Microbes disguised as Gram negatives. / Vesth, Tammi Camilla; Ozen, Asli; Andersen, Sandra Christine; Kaas, Rolf Sommer; Lukjancenko, Oksana; Bohlin, Jon; Nookaew, Intawat; Wassenaar, Trudy M.; Ussery, David.

    In: Standards in Genomic Sciences, Vol. 9, No. 2, 2013, p. 431-448.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  344. Published

    Whey protein reduces early life weight gain in mice fed a high-fat diet.. / Tranberg, Britt; Hellgren, Lars; Lykkesfeldt, Jens; Sejrsen, Kristen; Jeamet, Aymeric; Rune, Ida; Ellekilde, Merete; Nielsen, Dennis Sandris; Hansen, Axel Kornerup.

    In: PloS one., Vol. 8, No. 8, e71439, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  345. Published

    Whole-Exome Sequencing of 2,000 Danish Individuals and the Role of Rare Coding Variants in Type 2 Diabetes. / Lohmueller, Kirk E. ; Sparsø, Thomas; Li, Qibin; Andersson, Ehm; Korneliussen, Thorfinn; Albrechtsen, Anders; Banasik, Karina; Grarup, Niels; Hallgrimsdottir, Ingileif; Kiil, Kristoffer; O. Kilpeläinen, Tuomas; T. Krarup, Nikolaj; Pers, Tune Hannes; Sanchez, Gaston; Hu, Youna; DeGiorgio, Michael; Jørgensen, Torben; Sandbæk, Annelli; Lauritzen, Torsten; Brunak, Søren; Kristiansen, Karsten; Li, Yingrui; Hansen, Torben; Wang, Jun; Nielsen, Rasmus; Pedersen, Oluf.

    In: American Journal of Human Genetics, Vol. 93, 2013, p. 1-15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  346. Published

    wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases. / Gonzalez-Izarzugaza, Jose Maria; Vazquez, Miguel; del Pozo, Angela; Valencia, Alfonso.

    In: B M C Bioinformatics, Vol. 14, No. 345, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  347. 2012
  348. Published

    Microbial isoprenoid production. / Carlsen, Simon; Kielland-Brandt, Morten (Supervisor); Eliasson Lantz, Anna (Supervisor); Nielsen, Michael Lynge (Supervisor).

    Department of Systems Biology, DTU, 2012. 263 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  349. Published
  350. Published
  351. Published

    Absorption difference between diacylglycerol oil and butter blend containing diacylglycerol oil. / Kristensen, Janni Brogaard; Jørgensen, Henry; Mu, Huiling.

    In: European Journal of Lipid Science and Technology, Vol. 114, No. 2, 2012, p. 146-152.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  352. Published

    A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens). / Hildebrand, Falk; Ebersbach, Tine; Nielsen, Henrik Bjørn; Li, Xiaoping; Sonne, Si Brask; dos Santos, Marcelo Bertalan Quintanilha; Dimitrov, Peter; Madsen, Lise; Qin, Junjie; Wang, Jun; Raes, Jeroen; Kristiansen, Karsten; Licht, Tine Rask.

    In: B M C Genomics, Vol. 13, No. 514, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  353. Published

    A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production. / Sautter, Robert; Ramos, Damaris; Schneper, Lisa; Ciofu, Oana; Wassermann, Tina; Koh, Chong-Lek; Heydorn, Arne; Hentzer, Morton; Høiby, Niels; Kharazmi, Arsalan; Molin, Søren; DeVries, Caroline A.; Ohman, Dennis E.; Mathee, Kalai.

    In: Gene, Vol. 498, No. 2, 2012, p. 242-253.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  354. Published

    A container. / Hansen, Preben Bøje (Inventor); Stubbe, Peter Reimer (Inventor).

    IPC No.: B65D43/02. Jul 26, 2012.

    Publication: ResearchPatent – Annual report year: 2012

  355. Published

    Active Match Load Circuit Intended for Testing Piezoelectric Transformers. / Andersen, Thomas; Rødgaard, Martin Schøler; Andersen, Michael A. E.

    6th IET International Conference on Power Electronics, Machines and Drives. Institution of Engineering and Technology, 2012.

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2012

  356. Published

    Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective.. / Folkesson, Anders; Jelsbak, Lars; Yang, Lei; Johansen, Helle Krogh; Ciofu, Oana; Høiby, Niels; Molin, Søren.

    In: Nature Reviews. Microbiology, Vol. 10, No. 12, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  357. Published

    Adaptive evolution of drug targets in producer and non-producer organisms. / Hansen, Bjarne Gram; Sun, Xin E.; Genee, Hans Jasper; Kaas, Christian Schrøder; Nielsen, Jakob Blæsbjerg; Frisvad, Jens Christian; Hedstrom, Lizbeth.

    In: Biochemical Journal, Vol. 441, No. 1, 2012, p. 219-226.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  358. Published

    A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation.. / Dalgaard, Marlene D; Weinhold, Nils; Edsgard, Stefan Daniel; Silver, Jeremy D; Pers, Tune Hannes; Nielsen, John E.; Jørgensen, Niels; Juul, Anders; Gerds, Thomas A.; Giwercman, Aleksander; Giwercman, Yvonne L.; Cohn-Cedermark, Gabriella; Virtanen, Helena E.; Toppari, Jorma; Daugaard, Gedske; Jensen, Thomas Skøt; Brunak, Søren; Rajpert-De Meyts, Ewa; Skakkebæk, Niels E; Leffers, Henrik; Gupta, Ramneek.

    In: Journal of Medical Genetics, Vol. 49, No. 1, 2012, p. 58-65.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  359. Published

    Ajoene, a Sulfur-Rich Molecule from Garlic, Inhibits Genes Controlled by Quorum Sensing. / Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus Ernst; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 5, 2012, p. 2314-2325.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  360. Published

    Amalyse modifications during production and application. / Nielsen, Connie; Svensson, Birte (Main supervisor); Jensen, Ole Nørregaard (Supervisor); Sönksen, Carsten (Supervisor); Jacobsen, Susanne (Supervisor); Kaasgaard, Svend (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 161 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  361. Published

    Analysis of cytotoxic T cell epitopes in relation to cancer. / Stranzl, Thomas; Brunak, Søren (Main supervisor); Larsen, Mette Voldby (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 97 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  362. Published
  363. Published

    Androgen receptor signalling in peritubular myoid cells is essential for normal differentiation and function of adult Leydig cells. / Welsh, M.; Moffat, L.; Belling, Kirstine Christensen; de Franca, L. R.; Segatelli, T. M.; Saunders, P. T. K.; Sharpe, R. M.; Smith, L. B.

    In: International Journal of Andrology, Vol. 35, No. 1, 2012, p. 25-40.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  364. Published

    Anti-virulence approaches and novel peptidomimetics for combating resistant and biofilm associated bacteria. / Liu, Yang; Folkesson, Anders (Supervisor); Molin, Søren (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 116 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  365. Published

    A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines. / Polizzotto, Rachele; Andersen, Birgitte; Martini, Marta; Grisan, Simone; Assante, Gemma; Musetti, Rita.

    In: Journal of Microbiological Methods, Vol. 88, No. 1, 2012, p. 162-171.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  366. Published

    Applied systems biology - vanillin production in Saccharomyces cerevisiae. / Strucko, Tomas; Eriksen, Carsten; Nielsen, J.; Mortensen, Uffe Hasbro.

    In: The F E B S Journal (Online), Vol. 279, No. Supplement s1, 2012, p. 525-525.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  367. Published
  368. Published

    Aspergillus bertholletius sp. nov. from Brazil Nuts. / Taniwaki, Marta H.; Pitt, John I.; Iamanaka, Beatriz T.; Sartori, Daniele; Copetti, Marina V.; Balajee, Arun; Fungaro, Maria Helena P.; Frisvad, Jens Christian.

    In: P L o S One, Vol. 7, No. 8, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  369. Published
  370. Published

    Association between chemical pattern in breast milk and congenital cryptorchidism: modelling of complex human exposures. / Krysiak-Baltyn, Konrad; Toppari, J.; Skakkebaek, N. E.; Jensen, Thomas Skøt; Virtanen, H. E.; Schramm, K.‐W.; Shen, Hao; Vartiainen, T.; Kiviranta, H.; Taboureau, Olivier ; Audouze, Karine Marie Laure; Brunak, S.; Main, K. M.

    In: International Journal of Andrology, Vol. 35, No. 3, 2012, p. 294-302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  371. Published

    A Steered Molecular Dynamics Study of Binding and Translocation Processes in the GABA Transporter. / Skovstrup, Soren; David, Laurent; Taboureau, Olivier; Jorgensen, Flemming Steen.

    In: P L o S One, Vol. 7, No. 6, 2012, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  372. Published

    Atlantinone A, a meroterpenoid produced by Penicillium ribeum and several cheese associated Penicillium species. / Dalsgaard, Petur W.; Petersen, Bent O.; Duus, Jens Ø.; Zidorn, Christian; Frisvad, Jens Christian; Christophersen, Carsten; Larsen, Thomas Ostenfeld.

    In: Metabolites, Vol. 2, 2012, p. 214-220.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  373. Published

    Bacterial adaptive response to changing herbicide discharge rates in the streambed sediments impacted by a landfill. / Pazarbasi, Meric Batioglu; Bælum, Jacob; Pilloni, Giovanni; Larentis, Micheal; Jacobsen, Carsten S.; Lueders, Tillmann; Hansen, Lars H.; Aamand, Jens .

    2012. Poster session presented at 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2012

  374. Published

    Bayesian prediction of bacterial growth temperature range based on genome sequences. / Jensen, Dan Børge; Vesth, Tammi Camilla; Hallin, Peter Fischer; Pedersen, Anders Gorm; Ussery, David.

    Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology. Vol. 13 2012. (B M C Genomics).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2012

  375. Published

    BDDCS Class Prediction for New Molecular Entities. / Broccatelli, Fabio; Cruciani, Gabriele; Benet, Leslie Z.; Oprea, Tudor.

    In: Molecular Pharmaceutics, Vol. 9, No. 3, 2012, p. 570-580.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  376. Published

    Binding Interactions Between α-glucans from Lactobacillus reuteri and Milk Proteins Characterised by Surface Plasmon Resonance. / Diemer, Silja Kej; Svensson, Birte; Babol, Linnéa N.; Cockburn, Darrell; Grijpstra, Pieter; Dijkhuizen, Lubbert; Folkenberg, Ditte M.; Garrigues, Christel; Ipsen, Richard H.

    In: Food Biophysics, Vol. 7, No. 3, 2012, p. 220-226.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  377. Published

    Bioconversion of crude glycerol feedstocks into ethanol by Pachysolen tannophilus. / Liu, Xiaoying; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Bioresource Technology, Vol. 104, 2012, p. 559-586.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  378. Published

    Bioinformatics approaches to malaria. / Hansen, Daniel Aaen; Pedersen, Anders Gorm (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 135 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  379. Published

    Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. / Schneider, Maria V.; Walter, Peter; Blatter, Marie-Claude; Watson, James; Brazas, Michelle D.; Rother, Kristian; Budd, Aidan; Via, Allegra; van Gelder, Celia W. G.; Jacob, Joachim; Fernandes, Pedro; Nyrönen, Tommi H.; De Las Rivas, Javier; Holberg Blicher, Thomas; Jimenez, Rafael C.; Loveland, Jane; McDowall, Jennifer; Jones, Phil; Vaughan, Brendan W.; Lopez, Rodrigo; Attwood, Teresa K.; Brooksbank, Catherine.

    In: Briefings in Bioinformatics, Vol. 13, No. 3, 2012, p. 383-389.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  380. Published

    Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets. / Ali, Amjad; Soares, Siomar C.; Santos, Anderson R.; Guimarães, Luis C.; Barbosa, Eudes; Almeida, Sintia S.; Abreu, Vinícius A.C.; Carneiro, Adriana R.; Ramos, Rommel T.J.; Bakhtiar, Syeda Marriam; Hassan, Syed S.; Ussery, David W.; On, Stephen; Silva, Artur; Schneider, Maria P.; Lage, Andrey P.; Miyoshi, Anderson; Azevedo, Vasco.

    In: Gene, Vol. 508, No. 2, 2012, p. 145-156.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  381. Published

    Cells, shared memory and breaking the PTM code.. / Creixell, Pau; Linding, Rune.

    In: Molecular Systems Biology, Vol. 8, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  382. Published

    Ceramide profile in hypohidrotic ectodermal dysplasia. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Agner, T.; Jemec, G. B. E.

    In: Clinical and Experimental Dermatology, Vol. 37, No. 2, 2012, p. 153-155.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  383. Published

    CERT depletion predicts chemotherapy benefit and mediates cytotoxic and polyploid‐specific cancer cell death through autophagy induction. / Lee, Alvin J. X.; Roylance, Rebecca; Sander, Jil; Gorman, Patricia; Endesfelder, David; Kschischo, Maik; Jones, Neil P.; East, Philip; Nicke, Barbara; Spassieva, Stefka; Obeid, Lina M.; Birkbak, Nicolai Juul; Szallasi, Zoltan; McKnight, Nicole C.; Rowan, Andrew J.; Speirs, Valerie; Hanby, Andrew M.; Downward, Julian; Tooze, Sharon A.; Swanton, Charles.

    In: Journal of Pathology, Vol. 226, No. 3, 2012, p. 482-494.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  384. Published

    Characterization of HIV-Specific CD4+T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage. / Buggert, Marcus; Norstrom, Melissa M.; Czarnecki, Chris; Tupin, Emmanuel; Luo, Ma; Gyllensten, Katarina; Sonnerborg, Anders; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, Annika C.

    In: P L o S One, Vol. 7, No. 7, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  385. Published
  386. Published

    Characterizing the binding motifs of 11 common human HLA‐DP and HLA‐DQ molecules using NNAlign. / Andreatta, Massimo; Nielsen, Morten.

    In: Immunology, Vol. 136, No. 3, 2012, p. 306-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  387. Published
  388. Published

    Chemical and molecular characterization of Phomopsis and Cytospora-like endophytes from different host plants in Brazil. / Abreu, Lucas M.; Costa, Sarah S.; Pfenning, Ludwig H.; Takahashi, Jacqueline A.; Larsen, Thomas Ostenfeld; Andersen, Birgitte.

    In: Fungal Biology, Vol. 116, No. 2, 2012, p. 249-260.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  389. Published

    Children s health and its association with indoor environments in Danish homes and daycare centres – methods. / Clausen, Geo; Høst, A.; Toftum, Jørn; Bekö, Gabriel; Weschler, Charles J.; Callesen, M.; Buhl, S.; Ladegaard, M. B.; Langer, S.; Andersen, Birgitte; Sundell, Jan; Bornehag, Carl-Gustaf; Sigsgaard, T.

    In: Indoor Air, Vol. 22, 2012, p. 467-475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  390. Published

    Chitin elicitation of natural product production in marine bacteria. / Månsson, Maria; Wietz, Matthias; Larsen, Thomas Ostenfeld; Gram, Lone.

    2012. Abstract from Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  391. Published

    Combating biofilms. / Yang, Liang; Liu, Yang; Wu, Hong; Song, Zhijun; Hoiby, Niels; Molin, Søren; Givskov, Michael.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, Sp. Iss. SI, 2012, p. 146-157.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  392. Published

    Cometin is a novel neurotrophic factor that promotes neurite outgrowth and neuroblast migration in vitro and supports survival of spiral ganglion neurons in vivo. / Jørgensen, Jesper Roland; Fransson, Anette; Fjord-Larsen, Lone; Thompson, Lachlan H.; Houchins, Jeffrey P.; Andrade, Nuno; Torp, Malene; Kalkkinen, Nisse; Andersson, Elisabet; Lindvall, Olle; Ulfendahl, Mats; Brunak, Søren; Johansen, Teit E.; Wahlberg, Lars U.

    In: Experimental Neurology, Vol. 233, No. 1, 2012, p. 172-181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  393. Published

    Common and Distant Structural Characteristics of Feruloyl Esterase Families from Aspergillus oryzae. / Udatha, D. B. R. K. Gupta; Mapelli, Valeria; Panagiotou, Gianni; Olsson, Lisbeth.

    In: P L o S One, Vol. 7, No. 6, 2012, p. e39473.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  394. Published
  395. Published

    Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera.. / Lukjancenko, Oksana; Ussery, David; Wassenaar, Trudy M.

    In: Microbial Ecology, Vol. 63, No. 3, 2012, p. 651-673.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  396. Published

    Comparison of laser diffraction and image analysis for measurement of Streptomyces coelicolor cell clumps and pellets.. / Rønnest, Nanna Petersen; Stocks, Stuart M; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology Letters, Vol. 34, No. 8, 2012, p. 1465-1473.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  397. Published

    Computational Methods for Conformational Sampling of Biomolecules. / Bottaro, Sandro; Ferkinghoff-Borg, Jesper (Main supervisor); Lindorff-Larsen, Kresten (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 147 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  398. Published

    Concepts in Mechanism Based Modeling. / Lund, Ole; Laugesen, Jakob Lund; Mosekilde, Erik.

    Biosimulation in Biomedical Research, Health Care and Drug Development. Springer, 2012. p. 19-41.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2012

  399. Published

    Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.. / Nicolas, Pierre; Mäder, Ulrike; Dervyn, Etienne; Rochat, Tatiana; Leduc, Aurélie; Pigeonneau, Nathalie; Bidnenko, Elena; Marchadier, Elodie; Hoebeke, Mark; Aymerich, Stéphane; Becher, Dörte; Bisicchia, Paola; Botella, Eric; Delumeau, Olivier; Doherty, Geoff; Denham, Emma L; Fogg, Mark J; Fromion, Vincent; Goelzer, Anne; Hansen, Annette; Härtig, Elisabeth; Harwood, Colin R; Homuth, Georg; Jarmer, Hanne; Jules, Matthieu; Klipp, Edda; Le Chat, Ludovic; Lecointe, François; Lewis, Peter; Liebermeister, Wolfram; March, Anika; Mars, Ruben A T; Nannapaneni, Priyanka; Noone, David; Pohl, Susanne; Rinn, Bernd; Rügheimer, Frank; Sappa, Praveen K; Samson, Franck; Schaffer, Marc; Schwikowski, Benno; Steil, Leif; Stülke, Jörg; Wiegert, Thomas; Devine, Kevin M; Wilkinson, Anthony J; van Dijl, Jan Maarten; Hecker, Michael; Völker, Uwe; Bessières, Philippe; Noirot, Philippe.

    In: Science, Vol. 335, No. 6072, 2012, p. 1103-1106.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  400. Published

    Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes.. / Russell, Meaghan K; Longoni, Mauro; Wells, Julie; Maalouf, Faouzi I; Tracy, Adam A; Loscertales, Maria; Ackerman, Kate G; Pober, Barbara R; Hansen, Kasper Lage; Bult, Carol J; Donahoe, Patricia K.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 8, 2012, p. 2978-2983.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  401. Published

    Congenital diaphragmatic hernia interval on chromosome 8p23.1 characterized by genetics and protein interaction networks. / Longoni, Mauro; Hansen, Kasper Lage; Russell, Meaghan K.; Loscertales, Maria; Abdul‐Rahman, Omar A.; Baynam, Gareth; Bleyl, Steven B.; Brady, Paul D.; Breckpot, Jeroen; Chen, Chih P.; Devriendt, Koenraad; Gillessen‐Kaesbach, Gabriele; Grix, Arthur W.; Rope, Alan F.; Shimokawa, Osamu; Strauss, Bernarda; Wieczorek, Dagmar; Zackai, Elaine H.; Coletti, Caroline M.; Maalouf, Faouzi I.; Noonan, Kristin M.; Park, Ji H.; Tracy, Adam A.; Lee, Charles; Donahoe, Patricia K.; Pober, Barbara R.

    In: American Journal of Medical Genetics. Part A, Vol. 158A, No. 12, 2012, p. 3148-3158.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  402. Published

    Context matters — the complex interplay between resistome genotypes and resistance phenotypes. / Dantas, Gautam; Sommer, Morten.

    In: Current Opinion in Microbiology, Vol. 15, No. 5, 2012, p. 577-582.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  403. Published

    Conversion of the biodiesel by-product glycerol by the non-conventional yeast Pachysolen tannophilus. / Liu, Xiaoying ; Jensen, Peter Ruhdal (Supervisor); Workman, Mhairi (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 93 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  404. Published

    Defining the Pseudomonas Genus: Where Do We Draw the Line with Azotobacter?. / Özen, Asli Ismihan; Ussery, David.

    In: Microbial Ecology in Health & Disease, Vol. 63, No. 2, 2012, p. 239-248.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  405. Published

    Degradation of the starch components amylopectin and amylose by barley α-amylase 1: Role of surface binding site 2. / Nielsen, Jonas Willum; Kramhøft, Birte; Bozonnet, Sophie; Abou Hachem, Maher ; Stipp, Susan Louise Svane; Svensson, Birte; Willemoes, Martin.

    In: Archives of Biochemistry and Biophysics, Vol. 528, No. 1, 2012, p. 1-6.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  406. Published

    Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment. / Rau, Martin H.; Marvig, Rasmus Lykke; Ehrlich, Garth D.; Molin, Søren; Jelsbak, Lars.

    In: Environmental Microbiology, Vol. 14, No. 8, 2012, p. 2200-2211.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  407. Published

    Delimitation and characterisation of Talaromyces purpurogenus and related species. / Yilmaz, N.; Houbraken, J.; Hoekstra, E. S.; Frisvad, Jens Christian; Visagie, C. M.; Samson, Ramona.

    In: Persoonia, Vol. 29, 2012, p. 39-54.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  408. Published

    Describing the Peptide Binding Specificity of HLA-C. / Rasmussen, Michael; Harndahl, Mikkel Nors; Nielsen, Morten; Buus, Soren; Stryhn, Anette.

    2012. Abstract from 99th Annual Meeting of the American-Association-of-Immunologists, Boston MA, .

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  409. Published

    Designing bovine T cell vaccines via reverse immunology. / Nene, Vishvanath; Svitek, Nicholas; Toye, Philip; Golde, William T.; Barlow, John; Harndahl, Mikkel Nors; Buus, Soren; Nielsen, Morten.

    In: Ticks and Tick-borne Diseases, Vol. 3, No. 3, 2012, p. 188-192.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  410. Published
  411. Published

    Dietary Tools To Modulate Glycogen Storage in Gilthead Seabream Muscle: Glycerol Supplementation. / Silva, Tomé S.; Matos, Elisabete; Cordeiro, Odete D.; Colen, Rita; Wulff, Tune; Sampaio, Eduardo; Sousa, Vera; Valente, Luisa M. P.; Gonçalves, Amparo; Silva, Joana M. G.; Bandarra, Narcisa; Nunes, Maria Leonor; Dinis, Maria Teresa; Dias, Jorge; Jessen, Flemming; Rodrigues, Pedro M.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 42, 2012, p. 10613–10624.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  412. Published

    Differential Protein Pathways in 1,25-Dihydroxyvitamin D-3 and Dexamethasone Modulated Tolerogenic Human Dendritic Cells. / Ferreira, Gabriela Bomfim; Kleijwegt, Fleur S.; Waelkens, Etienne; Hansen, Kasper Lage; Nikolic, Tatjana; Hansen, Daniel Aaen; Workman, Christopher; Roep, Bart O.; Overbergh, Lut; Mathieu, Chantal.

    In: Journal of Proteome Research, Vol. 11, No. 2, 2012, p. 941-971.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  413. Published

    Digested Ara h 1 Loses Sensitizing Capacity When Separated into Fractions. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Rigby, Neil M.; Mills, E. N. Clare; Madsen, Charlotte Bernhard.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 11, 2012, p. 2934-2942.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  414. Published

    Digested BLG can induce tolerance when co-administered with intact BLG in Brown Norway rats. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Madsen, Charlotte Bernhard.

    2012. Abstract from 2th Pediatric Allergy & Asthma Meeting, Barcelona, Spain.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  415. Published

    Discovering sequence motifs in quantitative and qualitative pepetide data. / Andreatta, Massimo; Nielsen, Morten (Supervisor); Lund, Ole (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 105 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  416. Published

    Discovery of novel secondary metabolites in Aspergillus aculeatus. / Petersen, Lene Maj; Holm, Dorte Koefoed; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1159-1160.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  417. Published

    Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction. / Teppa, Elin; Wilkins, Angela D.; Nielsen, Morten; Marino Buslje, Cristina.

    In: B M C Bioinformatics, Vol. 13, 2012, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  418. Published

    Disparate SAR Data of Griseofulvin Analogues for the Dermatophytes Trichophyton mentagrophytes, T. rubrum, and MDA-MB-231 Cancer Cells. / Rønnest, Mads Holger; Raab, Marc S.; Anderhub, Simon; Boesen, Sven; Krämer, Alwin; Larsen, Thomas Ostenfeld; Clausen, Mads Hartvig.

    In: Journal of Medicinal Chemistry, Vol. 55, No. 2, 2012, p. 652-660.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  419. Published

    Dissecting molecular interactions involved in recognition of target disulfides by the barley thioredoxin system. / Björnberg, Olof; Maeda, Kenji; Svensson, Birte; Hägglund, Per.

    In: Biochemistry, Vol. 51, No. 49, 2012, p. 9930-9939.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  420. Published
  421. Published

    Draft Genome Sequence of the Yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460. / Liu, Xiaoying ; Kaas, Rolf Sommer; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Eukaryotic Cell (Online Edition), Vol. 11, No. 6, 2012, p. 827.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  422. Published

    Drug Repurposing: Far Beyond New Targets for Old Drugs. / Oprea, Tudor; Mestres, J.

    In: A A P S Journal, Vol. 14, No. 4, 2012, p. 759-763.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  423. Published

    Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene α-santalene in a fed-batch mode. / Scalcinati, Gionata; Knuf, Christoph; Partow, Siavash; Chen, Yun; Maury, Jerome; Schalk, Michel; Daviet, Laurent; Nielsen, Jens; Siewers, Verena.

    In: Metabolic Engineering, Vol. 14, No. 2, 2012, p. 91-103.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  424. Published

    Dynamics in population heterogeneity during batch and continuous fermentation of Saccharomyces cerevisiae. / Heins, Anna-Lena; Lencastre Fernandes, Rita; Lundin, L.; Carlquist, M.; Sörensen, S.; Gernaey, Krist; Eliasson Lantz, Anna.

    In: New Biotechnology, Vol. 29S, 2012, p. S199-S200.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  425. Published

    Early genetic adaptation associated with chronic pseudomonas aeruginosa airways infection. / Johansen, H. K.; Aanaes, K.; Pressler, Tacjana; Skov, M.; Nielsen, K. G.; Ciofu, Oana; Buchwald, C.; Hoiby, N.; Molin, Søren.

    In: Pediatric Pulmonology, Vol. 47, No. S35, 2012, p. 328-329.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  426. Published
  427. Published

    Effect of pulsed electric field on the germination of barley seeds. / Dymek, Katarzyna; Dejmek, Petr; Panarese, Valentina; Vicente, António A.; Wadsö, Lars; Finnie, Christine; Galindo, Federico Gómez.

    In: L W T- Food Science and Technology, Vol. 47, No. 1, 2012, p. 161-166.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  428. Published

    Effects of Butter and Phytanic acid intake on metabolic parameters and T-cell polarization. / Drachmann, Tue; Hellgren, Lars (Main supervisor); Pedersen, Susanne Brix (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 173 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  429. Published

    Effects of Preslaughter Stress Levels on the Post-mortem Sarcoplasmic Proteomic Profile of Gilthead Seabream Muscle. / Silva, Tomé Santos; Cordeiro, Odete D; Matos, Elisabete D.; Wulff, Tune; Dias, Jorge P; Jessen, Flemming; Rodrigues, Pedro M.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 37, 2012, p. 9443-9453.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  430. Published
  431. Published

    Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species. / Houbraken, J.; Spierenburg, H.; Frisvad, Jens Christian.

    In: Antonie van Leeuwenhoek, Vol. 101, No. 2, 2012, p. 403-421.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  432. Published

    Enantioselective determination of methylphenidate and ritalinic acid in whole blood from forensic cases using automated solid-phase extraction and liquid chromatography-tandem mass spectrometry.. / Thomsen, Ragnar; B. Rasmussen, Henrik; Linnet, Kristian; Brunak, Søren; Taboureau, Olivier .

    In: Journal of Analytical Toxicology, Vol. 36, 2012, p. 560-568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  433. Published
  434. Published

    Environmental and Life Style Factors in Relation to Male Reproductive Disorders. / Krysiak-Baltyn, Konrad; Brunak, Søren (Main supervisor); Jensen, Thomas Skøt (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 90 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  435. Published
  436. Published

    Erratum to “Food fermentations: microorganisms with technological beneficial use” [International Journal of Food Microbiology 154 (2012) 87–97]. / Bourdichon, François; Casaregola, Serge; Farrokh, Choreh; Frisvad, Jens Christian; Gerds, Monica L.; Hammes, Walter P.; Harnett, James; Huys, Geert; Laulund, Svend; Ouwehand, Arthur; Powell, Ian B.; Prajapati, Jashbhai B.; Seto, Yasuyuki; Ter Schure, Eelko; Van Boven, Aart; Vankerckhoven, Vanessa; Zgoda, Annabelle; Tuijtelaars, Sandra; Hansen, Egon Bech.

    In: International Journal of Food Microbiology, Vol. 156, No. 301, 2012.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2012

  437. Published

    Established and Emerging Trends in Computational Drug Discovery in the Structural Genomics Era. / Taboureau, Olivier; Baell, Jonathan B.; Fernández-Recio, Juan; Villoutreix, Bruno O.

    In: Chemistry & Biology, Vol. 19, No. 1, 2012, p. 29-41.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  438. Published
  439. Published

    Establishing new microbial cell factories for sustainable bioprocesses. / Workman, Mhairi; Holt, Philippe; Liu, Xiaoying .

    In: New Biotechnology, Vol. 29S, 2012, p. S75.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  440. Published
  441. Published
  442. Published
  443. Published
  444. Published

    Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection. / Hansen, Susse Kirkelund; Rau, Martin Holm; Johansen, Helle Krogh; Ciofu, Oana; Jelsbak, Lars; Yang, Lei; Folkesson, Anders; Jarmer, Hanne Østergaard; Aanæs, Kasper; von Buchwald, Christian; Høiby, Niels; Molin, Søren.

    In: I S M E Journal, Vol. 6, No. 1, 2012, p. 31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  445. Published

    Evolutionary dynamics of pseudomonas aeruginosa in CF. / Molin, Soren; Jelsbak, Lars; Johansen, Helle; Hoiby, Niels.

    In: Pediatric Pulmonology, Vol. 47, 2012, p. 152-153.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  446. Published

    Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption.. / Scalcinati, Gionata ; Otero, José Manuel; Van Vleet, Jennifer R. H.; Jeffries, Thomas W.; Olsson, Lisbeth; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 12, No. 5, 2012, p. 582-597.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  447. Published
  448. Published

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  449. Published

    Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. / Johnson, Timothy J.; Bielak, Eliza Maria; Fortini, Daniela; Hansen, Lars Hestbjerg; Hasman, Henrik; Debroy, Chitrita; Nolan, Lisa K; Carattoli, Alessandra.

    In: Plasmid, Vol. 68, No. 1, 2012, p. 43-50.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  450. Published

    Experimental poisoning by Baccharis megapotamica var. weirii in buffalo. / Oliveira-Filho, José C.; Carmo, Priscila M.S.; Iversen, Anita; Nielsen, Kristian Fog; Barros, Claudio S. L.

    In: Pesquisa Veterinaria Brasileira, Vol. 32, No. 5, 2012, p. 383-390.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  451. Published

    Fish intake, erythrocyte n-3 fatty acid status and metabolic health in Danish adolescent girls and boys. / Lauritzen, Lotte; Harsløf, Laurine B. S.; Hellgren, Lars; Pedersen, Maiken Højgaard; Mølgaard, Christian; Michaelsen, Kim F.

    In: British Journal of Nutrition, Vol. 107, 2012, p. 697-704.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  452. Published

    Fitting the complexity of GPCRs modulation into simple hypotheses of ligand design. / Custodi, Chiara; Nuti, Roberto; Oprea, Tudor; Macchiarulo, Antonio.

    In: Journal of Molecular Graphics and Modelling, Vol. 38, 2012, p. 70-81.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  453. Published

    Flip-Flop of Steroids in Phospholipid Bilayers: Effects of the Chemical Structure on Transbilayer Diffusion. / Parisio, Giulia; Sperotto, Maria Maddalena; Ferrarini, Alberta.

    In: American Chemical Society. Journal, Vol. 134, No. 29, 2012, p. 12198-12208.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  454. Published

    Food as a Source for Quorum Sensing Inhibitors: Iberin from Horseradish Revealed as a Quorum Sensing Inhibitor of Pseudomonas aeruginosa. / Jakobsen, Tim Holm; Bragason, Steinn Kristinn; Phipps, Richard Kerry; Christensen, Louise Dahl; van Gennip, Maria; Alhede, Morten; Skindersoe, Mette; Larsen, Thomas Ostenfeld; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Applied and Environmental Microbiology, Vol. 78, No. 7, 2012, p. 2410-2421.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  455. Published

    Food fermentations: Microorganisms with technological beneficial use. / Bourdichon, François; Casaregola, Serge; Farrokh, Choreh; Frisvad, Jens Christian; Gerds, Monica L.; Hammes, Walter P.; Harnett, James; Huys, Geert; Laulund, Svend; Ouwehand, Arthur; Powell, Ian B.; Prajapati, Jashbhai B.; Seto, Yasuyuki; Ter Schure, Eelko; Van Boven, Aart; Vankerckhoven, Vanessa; Zgoda, Annabelle; Tuijtelaars, Sandra; Hansen, Egon Bech.

    In: International Journal of Food Microbiology, Vol. 154, No. 3, 2012, p. 87-97.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  456. Published

    From Genome Sequence to Taxonomy - A Skeptic’s View. / Özen, Asli Ismihan; Vesth, Tammi Camilla; Ussery, David.

    The Prokaryotes. ed. / Rosenberg E.2012 : Springer, 2012.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2012

  457. Published

    From genomic variation to personalized medicine. / Wesolowska, Agata; Gupta, Ramneek (Supervisor); Brunak, Søren (Supervisor); Schmiegelow, Kjeld .

    Department of Systems Biology, DTU, 2012. 151 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  458. Published

    From Viral genome to specific peptide epitopes - Methods for identifying porcine T cell epitopes based on in silico predictions, in vitro identification and ex vivo verification. / Pedersen, Lasse Eggers; Rasmussen, Michael ; Harndahl, Mikkel ; Nielsen, Morten; Buus, Søren; Jungersen, Gregers.

    2012. Abstract from 4th European Veterinary Immunology Workshop (EVIW), Edinburgh, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  459. Published

    Functional and phenotypic profiling of innate immunity during Salmonella infection. / Sørensen, Rikke Brandt; Pedersen, Susanne Brix.

    Kgs. Lyngby : Technical University of Denmark, 2012. 128 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  460. Published

    Fungal natural products targeting chronic lymphocytic leukemia. / Bladt, Tanja Thorskov; Kildgaard, Sara; Knudsen, Peter Boldsen; Gotfredsen, Charlotte Held; Duerr, C.; Seiffert, M.; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1158-1158.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  461. Published

    Fungal Origins of the Bicyclo[2.2.2]diazaoctane Ring System of Prenylated Indole Alkaloids. / Finefield, Jennifer M.; Frisvad, Jens C.; Sherman, David H.; Williams, Robert M.

    In: Journal of Natural Products, Vol. 75, No. 4, 2012, p. 812-833.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  462. Published

    Gene Dose Effects of GSTM1, GSTT1 and GSTP1 Polymorphisms on Outcome in Childhood Acute Lymphoblastic Leukemia. / Borst, Louise; Buchard, Anders; Rosthoj, Susanne; Wesolowska, Agata; Wehner, Peder Skov; Wesenberg, Finn; Dalhoff, Kim; Schmiegelow, Kjeld.

    In: Journal of Pediatric Hematology / Oncology, Vol. 34, No. 1, 2012, p. 38-42.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  463. Published

    Gene expression dynamics in the oxidative stress response of fission yeast. / Papadakis, Emmanouil; Workman, Christopher (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark (DTU), 2012. 221 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  464. Published

    Gene prioritization for livestock diseases by data integration. / Jiang, Li; Sørensen, Peter; Thomsen, Bo Stjerne; Edwards, Stefan McKinnon; Skarman, Axel; Røntved, Christine Maria; Lund, Mogens Sandø; Workman, Christopher T.

    In: Physiological Genomics, Vol. 44, No. 5, 2012, p. 305-317.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  465. Published
  466. Published

    Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development. / Hansen, Kasper Lage; Greenway, Steven C.; Rosenfeld, Jill A.; Wakimoto, Hiroko; Gorham, Joshua M.; Segrè, Ayellet V.; Roberts, Amy E.; Smoot, Leslie B.; Pu, William T.; C. Pereira, Alexandre; Mesquita, Sonia M.; Tommerup, Niels; Brunak, Søren; Ballif, Blake C.; Shaffer, Lisa G.; Donahoe, Patricia K.; Daly, Mark J.; Seidman, Jonathan G.; Seidman, Christine E.; Larsen, Lars.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 35, 2012, p. 14035-14040.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  467. Published
  468. Published

    Genome-scale metabolic representation of Amycolatopsis balhimycina. / Vongsangnak, Wanwipa; Figueiredo, L. F.; Forster, J.; Weber, Tilmann; Thykær, Jette; Stegmann, E.; Wohlleben, W.; Nielsen, Jens.

    In: Biotechnology and Bioengineering (Print), Vol. 109, No. 7, 2012, p. 1798-1807.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  469. Published

    Genome‐wide analysis of cytogenetic aberrations in ETV6/RUNX1‐positive childhood acute lymphoblastic leukaemia. / Borst, Louise; Wesolowska, Agata; Joshi, Tejal; Borup, Rehannah; Nielsen, Finn; Andersen, Mette K.; Jonsson, Olafur G.; Wehner, Peder Skov; Wesenberg, Finn; Frost, Britt‐Marie; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: British Journal of Haematology, Vol. 157, No. 4, 2012, p. 476-482.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  470. Published

    Genome‐wide identification of novel small RNAs in Pseudomonas aeruginosa. / Gómez Lozano, María; Marvig, Rasmus Lykke; Molin, Søren; Long, Katherine.

    In: Environmental Microbiology, Vol. 14, No. 8, 2012, p. 2006-2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  471. Published
  472. Published

    GF-15, a Novel Inhibitor of Centrosomal Clustering, Suppresses Tumor Cell Growth In Vitro and In Vivo. / Raab, Marc S.; Breitkreutz, Iris; Anderhub, Simon; Rønnest, Mads Holger; Leber, Blanka; Larsen, Thomas Ostenfeld; Weiz, Ludmila; Konotop, Gleb; Hayden, Patrick J.; Podar, Klaus; Fruehauf, Johannes; Nissen, Felix; Mier, Walter; Haberkorn, Uwe; Ho, Anthony D.; Goldschmidt, Hartmut; Anderson, Kenneth C.; Clausen, Mads Hartvig; Krämer, Alwin.

    In: Cancer Research, Vol. 72, No. 20, 2012, p. 5374-5385.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  473. Published

    Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.. / Buescher, Joerg Martin; Liebermeister, Wolfram; Jules, Matthieu; Uhr, Markus; Muntel, Jan; Botella, Eric; Hessling, Bernd; Kleijn, Roelco Jacobus; Le Chat, Ludovic; Lecointe, François; Mäder, Ulrike; Nicolas, Pierre; Piersma, Sjouke; Rügheimer, Frank; Becher, Dörte; Bessieres, Philippe; Bidnenko, Elena; Denham, Emma L; Dervyn, Etienne; Devine, Kevin M; Doherty, Geoff; Drulhe, Samuel; Felicori, Liza; Fogg, Mark J; Goelzer, Anne; Hansen, Annette; Harwood, Colin R; Hecker, Michael; Hubner, Sebastian; Hultschig, Claus; Jarmer, Hanne; Klipp, Edda; Leduc, Aurélie; Lewis, Peter; Molina, Frank; Noirot, Philippe; Peres, Sabine; Pigeonneau, Nathalie; Pohl, Susanne; Rasmussen, Simon; Rinn, Bernd; Schaffer, Marc; Schnidder, Julian; Schwikowski, Benno; Van Dijl, Jan Maarten; Veiga, Patrick; Walsh, Sean; Wilkinson, Anthony J; Stelling, Jörg; Aymerich, Stéphane; Sauer, Uwe.

    In: Science, Vol. 335, No. 6072, 2012, p. 1099-1103.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  474. Published

    Group a Pfemp1 functional domains bind icam1 and induce cross-reactive and adhesion inhibitory antibodies during malaria infections. / Bengtsson, A.; Jørgensen, L.; Rask, Thomas Salhøj; Olsen, R. W.; Andersen, M. A.; Turner, L.; Theander, T. G. ; Higins, M. K.; Craig, A.; Brown, A.; Christoffersen, S.; Jensen, A. T. R.

    Joint Spring Symposium 2012 - Double burden of disease – how parasites interact with each other, their host and the society: Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. Danish Society for Parasitology, 2012. p. 9.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2012

  475. Published

    Hemorrhagic pneumonia in mink caused by Pseudomonas aeruginosa. / Salomonsen, Charlotte Mark; Boye, Mette (Main supervisor); Høiby, Niels (Supervisor); Molin, Søren (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 105 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  476. Published

    Heterogeneity in recombinant protein production. / Schalén, Martin; Johanson, Ted; Lundin, Luisa; Sørensen, Søren; Eliasson Lantz, Anna.

    In: New Biotechnology, Vol. 29S, 2012, p. S78.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  477. Published

    How well do the substrates KISS the enzyme? Molecular docking program selection for feruloyl esterases. / Udatha, D. B. R. K. Gupta; Sugaya, Nobuyoshi; Olsson, Lisbeth; Panagiotou, Gianni.

    In: Scientific Reports, Vol. 2, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  478. Published

    Hyperactivity of the Ero1α Oxidase Elicits Endoplasmic Reticulum Stress but No Broad Antioxidant Response. / Hansen, Henning Gram; Schmidt, Jonas Damgard; Soltoft, Cecilie Lutzen; Ramming, Thomas; Geertz-Hansen, Henrik Marcus; Christensen, Brian; Sorensen, Esben Skipper; Juncker, Agnieszka; Appenzeller-Herzog, Christian; Ellgaard, Lars.

    In: Journal of Biological Chemistry, Vol. 287, No. 47, 2012, p. 39513-39523.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  479. Published

    Hypopulvins, novel peptaibiotics from the polyporicolous fungus Hypocrea pulvinata, are produced during infection of its natural hosts. / Röhrich, Christian René; Iversen, Anita; Jaklitsch, Walter Michael; Voglmayr, Hermann; Berg, Albrecht; Dörfelt, Heinrich; Thrane, Ulf; Vilcinskas, Andreas; Nielsen, Kristian Fog; von Döhren, Hans; Brückner, Hans; Degenkolb, Thomas.

    In: Fungal Biology, Vol. 116, No. 12, 2012, p. 1219-1231.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  480. Published
  481. Published

    Identification of a Novel UTY‐Encoded Minor Histocompatibility Antigen. / Mortensen, B. K.; Rasmussen, A. H.; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Braendstrup, P.; Harndahl, Mikkel Nors; Rasmussen, M.; Buus, S.; Stryhn, A.; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 76, No. 2, 2012, p. 141-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  482. Published
  483. Published
  484. Published

    Identification of Genes Important for Growth of Asymptomatic Bacteriuria Escherichia coli in Urine. / Vejborg, Rebecca Munk; de Evgrafov, Mari Cristina Rodriguez; Phan, Minh Duy; Totsika, Makrina; Schembri, Mark; Hancock, Viktoria .

    In: Infection and Immunity, Vol. 80, No. 9, 2012, p. 3179-3188.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  485. Published

    Immune epitope database analysis resource. / Kim, Yohan; Ponomarenko, Julia; Zhu, Zhanyang; Tamang, Dorjee; Wang, Peng; Greenbaum, Jason; Lundegaard, Claus; Sette, Alessandro; Lund, Ole; Bourne, Philip E.; Nielsen, Morten; Peters, Bjoern.

    In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W525-W530.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  486. Published

    Immune Recognition of Latency-insitigating Pathogens by Human Dendritic Cells. / Søndergaard, Jonas Nørskov; Pedersen, Susanne Brix (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 106 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  487. Published

    Immunogenicity of Mycobacterium avium subsp. paratuberculosis specific peptides for inclusion in a subunit vaccine against paratuberculosis. / Mikkelsen, Heidi; Tollefsen, S.; Olsen, I.; Aagaard, C.; Lundegaard, Claus; Jungersen, Gregers.

    2012. Abstract from 4th European Veterinary Immunology Workshop (EVIW), Edinburgh, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  488. Published

    Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks.. / Brochado, Ana Rita; Andrejev, Sergej; Maranas, Costas D.; Patil, Kiran R.

    In: P L o S Computational Biology, Vol. 8, No. 11, 2012, p. e1002758.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  489. Published

    Implementing an online tool for genome-wide validation of survival-associated biomarkers in ovarian-cancer using microarray data from 1287 patients. / Győrffy, Balázs; Lánczky, András; Szállási, Zoltán.

    In: Endocrine - Related Cancer, Vol. 19, No. 2, 2012, p. 197-208.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  490. Published

    Improved detection of Salmonella through the optimized use of DNA polymerases in real-time PCR. / Löfström, Charlotta; Søndergaard, Mette Sofie Rousing; Josefsen, Mathilde Hartmann; Al-Habib, Zahra Fares Sayer; Hoorfar, Jeffrey.

    2012. Poster session presented at 23rd International ICFMH Symposium, FoodMicro 2012, Istanbul, Turkey.

    Publication: Research - peer-reviewPoster – Annual report year: 2012

  491. Published

    Improved detection of Salmonella through the optimized use of DNA polymerases in real-time PCR. / Löfström, Charlotta; Søndergaard, Mette Sofie Rousing; Josefsen, Mathilde Hartmann; Al-Habib, Zahra Fares Sayer; Hoorfar, Jeffrey.

    XXIII FoodMicro 2012: Abstract Book. ed. / Dilek Heperkan; Funda Karbancioglu-Guler; Ceren Daskaya-Dikmen. Istanbul : Istanbul Technical University, 2012. p. 319.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2012

  492. Published

    Improved wound care product. / Kirketerp-Møller, Klaus (Inventor); Givskov, Michael Christian (Inventor); Bjarnsholt, Thomas (Inventor).

    IPC No.: A61K47/02. Oct 26, 2012.

    Publication: ResearchPatent – Annual report year: 2012

  493. Published

    Improving the prediction of the brain disposition for orally administered drugs using BDDCS. / Broccatelli, Fabio; Larregieu, Caroline A.; Cruciani, Gabriele; Oprea, Tudor; Benet, Leslie Z.

    In: Advanced Drug Delivery Reviews, Vol. 64, No. 1, 2012, p. 95-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  494. Published

    Inactivation of barley limit dextrinase inhibitor by thioredoxin-catalysed disulfide reduction. / Jensen, Johanne Mørch; Hägglund, Per; Christensen, Hans Erik Mølager; Svensson, Birte.

    In: F E B S Letters, Vol. 586, No. 16, 2012, p. 2479-2482.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  495. Published

    Industrial glucoamylase fed‐batch benefits from oxygen limitation and high osmolarity. / Pedersen, Lasse; Hansen, Kim; Nielsen, Jens; Eliasson Lantz, Anna; Thykær, Jette.

    In: Biotechnology and Bioengineering (Print), Vol. 109, No. 1, 2012, p. 116-124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  496. Published

    Initial Pseudomonas aeruginosa infection in patients with cystic fibrosis: characteristics of eradicated and persistent isolates. / Tramper-Stranders, G. A.; van der Ent, C. K.; Molin, Søren; Yang, Liang; Hansen, Susse Kirkelund; Rau, Martin Holm; Ciofu, Oana; Johansen, H. K.; Wolfs, T. F. W.

    In: Clinical Microbiology and Infection, Vol. 18, No. 6, 2012, p. 567-574.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  497. Published

    Insights into physiological traits of Bifidobacterium animalis subsp. lactis BB-12 through membrane proteome analysis. / Gilad, Ofir; Hjernø, Karin; Østerlund, Eva Christina; Margolles, Abelardo; Svensson, Birte; Stuer-Lauridsen, Birgitte; Møller, Anders Laurell Blom; Jacobsen, Susanne.

    In: Journal of Proteomics, Vol. 75, No. 4, 2012, p. 1190-1200.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  498. Published

    Integrated analytical approaches towards toxic algal natural products discovery. / Larsen, Thomas Ostenfeld; Rasmussen, Silas Anselm; Gedsted Andersen, Mikael; Blossom, Hannah Eva; Christophersen, Carsten; Hansen, Per Juel; Nielsen, Kristian Fog.

    2012. Abstract from 15th International Conference in Harmful Algae, Gyeongnam, Korea, Republic of.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  499. Published

    Integrative data analysis of male reproductive disorders. / Edsgard, Stefan Daniel; Brunak, Søren (Main supervisor); Jensen, Thomas Skøt (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 186 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  500. Published

    Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing. / Gerlinger, Marco; Rowan, Andrew J.; Horswell, Stuart; Larkin, James; Endesfelder, David; Gronroos, Eva; Martinez, Pierre; Matthews, Nicholas; Stewart, Aengus; Tarpey, Patrick; Varela, Ignacio; Phillimore, Benjamin; Begum, Sharmin; McDonald, Neil Q.; Butler, Adam; Jones, David; Raine, Keiran; Latimer, Calli; Santos, Claudio R.; Nohadani, Mahrokh; Eklund, Aron Charles; Spencer-Dene, Bradley; Clark, Graham; Pickering, Lisa; Stamp, Gordon; Gore, Martin; Szallasi, Zoltan Imre; Downward, Julian; Futreal, P. Andrew; Swanton, Charles.

    In: New England Journal of Medicine, Vol. 366, No. 10, 2012, p. 883-892.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  501. Published
  502. Published

    Isolation of IL-12p70-competent human monocyte-derived dendritic cells. / Søndergaard, Jonas Nørskov; Pedersen, Susanne Brix.

    In: Journal of Immunological Methods, Vol. 386, No. 1-2, 2012, p. 112-116.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  503. Published

    Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase. / Cuyvers, Sven; Dornez, Emmie; Abou Hachem, Maher ; Svensson, Birte; Hothorn, Michael; Chory, Joanne; Delcour, Jan A.; Courtin, Christophe M.

    In: Analytical Biochemistry, Vol. 420, No. 1, 2012, p. 90-92.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

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