Department of Systems Biology

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  1. 2013
  2. Published

    31P gain of chromosomal region 15q26 cause increased expression of blm and fanci, and is associated with sensitivity to platinum chemotherapy in triple negative breast cancer. / Birkbak, Nicolai Juul; Li, Y.; Bowman-Collin, C.; Iglehart, J.D.; Silver, D.; Wang, Z.C.; Szallasi, Zoltan Imre; Richardson, A.

    In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii22.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  3. Published

    45p deciphering patterns of chromosomal aberrations in breast cancer patients: how defects in specific dna repair genes affect the accumulation of gross dna aberrations in the cancer genome. / Marquard, Andrea Marion; Birkbak, Nicolai Juul; Eklund, Aron Charles; Varga, A.; Szüts, D.; Szallasi, Zoltan Imre.

    In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii26.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  4. Published

    Accurate prediction of secondary metabolite gene clusters in filamentous fungi.. / Andersen, Mikael Rørdam; Nielsen, Jakob Blæsbjerg; Klitgaard, Andreas; Petersen, Lene Maj; Zachariasen, Mia; Hansen, Tilde J; Holberg Blicher, Lene; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Mortensen, Uffe Hasbro.

    In: National Academy of Sciences. Proceedings, Vol. 110, No. 1, 2013, p. E99-E107.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  5. Published

    A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. / Bælum, Jacob; Chambon, Julie Claire Claudia; Scheutz, Charlotte; Binning, Philip John; Laier, Troels; Bjerg, Poul Løgstrup; Jacobsen, Carsten.

    In: Water Research, Vol. 47, No. 7, 2013, p. 2467-2478.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  6. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, M. Thomas P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    In: The nature of parasitism: Joint Spring Symposium 2013, Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. 2013. p. 8.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2013

  7. Published

    Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.

    In: Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).

    Publication: Research - peer-review › Book chapter – Annual report year: 2013

  8. Published

    Aquaculture application and ecophysiology of marine bacteria from the Roseobacter clade. / D'Alvise, Paul; Gram, Lone (Main supervisor).

    Søborg : DTU Food, 2013. 79 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  9. Published

    A Unified Model of the GABA(A) Receptor Comprising Agonist and Benzodiazepine Binding Sites. / Kongsbak, Kristine Grønning; Bergmann, Rikke; Sørensen, Pernille Louise; Sander, Tommy; Balle, Thomas.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e52323.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  10. Accepted

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food. / Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.; Berner, T.S.; Nielsen, Kristian Fog; Adimpong, David Bichala; Diawara, B.; Ouedraogo, G.A.; Jakobsen, M.; Thorsen, L.

    In: Journal of Applied Microbiology, 2013.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  11. Published

    Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.

    In: Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).

    Publication: Research - peer-review › Book chapter – Annual report year: 2013

  12. Published

    Cell mass and cell cycle dynamics of an asynchronous budding yeast population : Experimental observations, flow cytometry data analysis, and multi-scale modeling. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Sørensen, Søren J.; Jensen, Anker Degn; Nopens, Ingmar; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology and Bioengineering (Print), Vol. 110, No. 3, 2013, p. 812-826.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  13. Published

    Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production. / Jensen, Birgit; Knudsen, Inge M.B.; Andersen, Birgitte; Nielsen, Kristian Fog; Thrane, Ulf; Jensen, Dan Funck; Larsen, John.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 313-322.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  14. Published

    ChemProt-2.0: visual navigation in a disease chemical biology database. / Kjærulff, Sonny Kim; Wich, Louis; Kringelum, Jens Vindahl; Jacobsen, Ulrik Plesner; Kouskoumvekaki, Irene; Audouze, Karine Marie Laure; Lund, Ole; Brunak, Søren; Oprea, Tudor; Taboureau, Olivier .

    In: Nucleic Acids Research, Vol. 41, No. D1, 2013, p. D464-D469.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  15. Published

    CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.. / Vesth, Tammi Camilla; Lagesen, Karin; Acar, Öncel; Ussery, David.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e60120.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  16. Published

    Comparative fermentation of insoluble carbohydrates in an in vitro human feces model spiked with Lactobacillus acidophilus NCFM. / Knudsen, Anne; van Zanten, Gabriella C.; Jensen, Susanne L.; Forssten, Sofia D.; Saarinen, Markku; Lahtinen, Sampo J.; Bandsholm, Ole; Svensson, Birte; Jespersen, Lene; Blennow, Andreas.

    In: Starch, Vol. 65, No. 3‐4, 2013, p. 346-353.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  17. Published

    Content and distribution of phytanic acid diastereomers in organic milk as affected by feed composition. / Che, Brita Ngum; Kristensen, Troels; Nebel, Caroline; Dalsgaard, Trine; Hellgren, Lars; Young, Jette Feveile; Larsen, Mette K.

    In: Journal of Agricultural and Food Chemistry, Vol. 61, No. 1, 2013, p. 225-230.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  18. Published

    Co-production of surfactin and a novel bacteriocin by Bacillus subtilis subsp. subtilis H4 isolated from bikalga, an African alkaline Hibiscus sabdariffa seed fermented condiment.. / Compaore, C. S.; Nielsen, Dennis S.; Ouoba, L. I. I.; Berner, Torben Sune; Nielsen, Kristian Fog; Sawadogo-Lingani, H.; Diawara, B.; Ouedraogo, G. A.; Jakobsen, Mogens; Thorsen, Line.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 297-307.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  19. Published

    Covalent Immobilization of β-Glucosidase on Magnetic Particles for Lignocellulose Hydrolysis. / Alftrén, Johan; Hobley, Timothy John.

    In: Applied Biochemistry and Biotechnology, Vol. 169, No. 7, 2013, p. 2076-2087.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  20. Published

    Development of a Rapid Real-Time PCR Method as a Tool To Quantify Viable Photobacterium phosphoreum Bacteria in Salmon (Salmo salar) Steaks. / Macé, Sabrina; Mamlouk, Kelthoum; Chipchakova, Stoyka; Prévost, Hervé; Joffraud, Jean-Jacques; Dalgaard, Paw; Pilet, Marie-France; Dousset, Xavier.

    In: Applied and Environmental Microbiology, Vol. 79, No. 8, 2013, p. 2612-2619.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  21. Published

    Discovery of a novel selective PPARγ ligand with partial agonist binding properties by integrated in silico / in vitro work flow. / Kouskoumvekaki, Irene; Petersen, Rasmus K.; Fratev, Filip Filipov ; Taboureau, Olivier ; Nielsen, Thomas Eiland; Oprea, Tudor; Sonne, Si Brask; Flindt, Esben N.; Jonsdottir, Svava Osk; Kristiansen, Karsten.

    In: Journal of Chemical Information and Modeling, Vol. 53, No. 4, 2013, p. 923-937.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  22. Published

    Effect of natural microbiota on growth of Salmonella spp. in fresh pork – A predictive microbiology approach. / Møller, Cleide; Ilg, Y.; Aabo, Søren; Christensen, Bjarke Bak; Dalgaard, Paw; Hansen, Tina Beck.

    In: Food Microbiology, Vol. 34, No. 2, 2013, p. 284-295.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  23. Published

    Engineering strategies aimed at control of acidification rate of lactic acid bacteria. / Martinussen, Jan; Solem, Christian; Holm, Anders Koefoed; Jensen, Peter Ruhdal.

    In: Current Opinion in Biotechnology, Vol. 24, No. 2, 2013, p. 124-129.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  24. Published

    Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts.. / Pedersen, Søren Damkiær; Yang, Lei; Molin, Søren; Jelsbak, Lars.

    In: National Academy of Sciences. Proceedings, Vol. 110, No. 19, 2013.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  25. Published

    Expression and functional studies of genes involved in transport and metabolism of glycerol in Pachysolen tannophilus.. / Liu, Xiaoying; Mortensen, Uffe Hasbro; Workman, Mhairi.

    In: Microbial Cell Factories, Vol. 12, 2013, p. 27.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  26. Published

    Filtering apparatus and method for mixing, extraction and/or separation. / Stubbe, Peter Reimer (Inventor); Hansen, Preben Bøje (Inventor).

    IPC No.: A23L1/221. Feb 21, 2013.

    Publication: Research › Patent – Annual report year: 2013

  27. Published

    From essential to persistent genes: a functional approach to constructing synthetic life. / Acevedo-Rocha, Carlos G.; Fang, Gang; Schmidt, Markus; Ussery, David; Danchin, Antoine.

    In: Trends in Genetics, Vol. 29, No. 5, 2013, p. 273-279.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  28. Published

    Fusarium graminearum and Its Interactions with Cereal Heads: Studies in the Proteomics Era.. / Yang, Fen; Jacobsen, Susanne; Jørgensen, Hans J L; Collinge, David B.; Svensson, Birte; Finnie, Christine.

    In: Frontiers in Plant Science, Vol. 4, 2013, p. 37.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  29. Published

    Genome Sequencing Identifies Two Nearly Unchanged Strains of Persistent Listeria monocytogenes Isolated at Two Different Fish Processing Plants Sampled 6 Years Apart. / Holch, Anne; Webb, Kristen; Lukjancenko, Oksana; Ussery, David; Rosenthal, Benjamin M.; Gram, Lone.

    In: Applied and Environmental Microbiology, Vol. 79, No. 9, 2013, p. 2944-2951.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  30. Published

    Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.. / Edsgard, Stefan Daniel; Dalgaard, Marlene Danner; Weinhold, Nils; Wesolowska, Agata; Rajpert-De Meyts, Ewa; Ottesen, Anne Marie; Juul, Anders; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Gupta, Ramneek; Leffers, Henrik; Brunak, Søren.

    In: Frontiers in Endocrinology, Vol. 4, 2013.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  31. Published

    Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing. / Zankari, Ea; Hasman, Henrik; Kaas, Rolf Sommer; Seyfarth, Anne Mette; Agersø, Yvonne; Lund, Ole; Larsen, Mette Voldby; Aarestrup, Frank Møller.

    In: Journal of Antimicrobial Chemotherapy, Vol. 68, No. 4, 2013, p. 771-777.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  32. Published

    HExpoChem: a systems biology resource to explore human exposure to chemicals. / Taboureau, Olivier ; Jacobsen, Ulrik Plesner; Kalhauge, Christian Gram; Edsgard, Stefan Daniel; Rigina, Olga; Gupta, Ramneek; Audouze, Karine Marie Laure.

    In: Bioinformatics, Vol. 29, No. 9, 2013, p. 201231-1232.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  33. Published

    High beta-Lactamase Levels Change the Pharmacodynamics of beta-Lactam Antibiotics in Pseudomonas aeruginosa Biofilms. / Wang, Hengzhuang; Ciofu, Oana; Yang, Liang; Wu, Hong; Song, Zhijun; Oliver, Antonio; Hoiby, Niels.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 1, 2013, p. 196-204.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  34. Published

    High in vitro antimicrobial activity of β-peptoid-peptide hybrid oligomers against planktonic and biofilm cultures of Staphylococcus epidermidis.. / Liu, Yang; Knapp, Kolja Michael; Yang, Liang; Molin, Søren; Franzyk, Henrik; Folkesson, Anders.

    In: International Journal of Antimicrobial Agents, Vol. 41, No. 1, 2013, p. 20-27.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  35. Published

    Identification of LasR Ligands through a Virtual Screening Approach. / Skovstrup, Søren; Le Quement, Sebastian Thordal; Hansen, Thomas; Jakobsen, Tim Holm; Harmsen, Morten; Tolker‐Nielsen, Tim; Nielsen, Thomas Eiland; Givskov, Michael Christian; Taboureau, Olivier .

    In: ChemMedChem, Vol. 8, No. 1, 2013, p. 157-163.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  36. Published

    Identification of peptides from foot‐and‐mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA) alleles, SLA‐1*0401 and SLA‐2*0401. / Pedersen, Lasse Eggers; Harndahl, M.; Nielsen, Morten; Patch, J. R.; Jungersen, Gregers; Buus, S.; Golde, W. T.

    In: Animal Genetics, Vol. 44, No. 3, 2013, p. 251-258.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  37. Published

    Identification of the Receptor-Binding Protein in Lytic Leuconostoc pseudomesenteroides Bacteriophages. / Kot, Witold Piotr; Hammer, Karin; Neve, Horst; Vogensen, Finn Kvist.

    In: Applied and Environmental Microbiology, Vol. 79, No. 10, 2013, p. 203311-3314.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  38. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Biology of Blood and Marrow Transplantation, Vol. 19, No. 2, 2013, p. S335.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2013

  39. Published

    Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory.. / Otero, José Manuel; Cimini, Donatella; Patil, Kiran Raosaheb; Poulsen, Simon Guldberg; Olsson, Lisbeth; Nielsen, Jens.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e54144.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  40. Published

    Influence of Temperature on Mechanical Properties of Jute/Biopolymer Composites. / Løvdal, Alexandra ; Laursen, Louise Løcke; Løgstrup Andersen, Tom; Madsen, Bo; Mikkelsen, Lars Pilgaard.

    In: Journal of Applied Polymer Science, Vol. 128, No. 3, 2013, p. 2038-2045.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  41. Published

    In vitro growth of four individual human gut bacteria on oligosaccharides produced by chemoenzymatic synthesis.. / Vigsnæs, Louise Kristine; Nakai, Hiroyuki; Hemmingsen, Lene; Andersen, Joakim Mark; Lahtinen, Sampo J; Rasmussen, Louise Enggaard; Abou Hachem, Maher ; Petersen, Bent O.; Duus, Jens Øllgaard; Meyer, Anne S.; Licht, Tine Rask; Svensson, Birte.

    In: Food & Function, Vol. 4, No. 5, 2013, p. 784-793.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  42. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis. / Zanivan, Sara; Meves, Alexander; Behrendt, Kristina; Schoof, Erwin; Neilson, Lisa J.; Cox, Jürgen; Tang, Hao R.; Kalna, Gabriela; van Ree, Janine H.; van Deursen, Jan M.; Trempus, Carol S.; Machesky, Laura M.; Linding, Rune; Wickström, Sara A.; Fässler, Reinhard; Mann, Matthias.

    In: Cell Reports, Vol. 3, No. 2, 2013, p. 552-566.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  43. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from Cell Symposia, Lisbon, Portugal.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2013

  44. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from 27th Nordic Lipid Symposium, Helsinki, Finland.

    Publication: Research › Conference abstract for conference – Annual report year: 2013

  45. Published

    Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives. / Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren.

    In: Fungal Biology, Vol. 117, No. 1, 2013, p. 32-40.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  46. Published

    Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles. / Mothé, Bianca R.; Southwood, Scott; Sidney, John; English, A. Michelle; Wriston, Amanda; Hoof, Ilka; Shabanowitz, Jeffrey; Hunt, Donald F.; Sette, Alessandro.

    In: Immunogenetics, Vol. 65, No. 5, 2013, p. 371-386.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  47. Published

    Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. / O’Donnell, Kerry; Rooney, Alejandro P.; Proctor, Robert H.; Brown, Daren W.; McCormick, Susan P.; Ward, Todd J.; Frandsen, Rasmus John Normand; Lysøe, Erik; Rehner, Stephen A.; Aoki, Takayuki; Robert, Vincent A.R.G.; Crous, Pedro W.; Groenewald, Johannes Z.; Kang, Seogchan; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 52, 2013, p. 20-31.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  48. Published

    Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.. / Short, Dylan P.G.; O’Donnell, Kerry; Thrane, Ulf; Nielsen, Kristian Fog; Zhang, Ning; Juba, Jean H.; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 53, 2013, p. 59-70.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  49. Published

    Postnatal amniotic fluid intake reduces gut inflammatory responses and necrotizing enterocolitis in preterm neonates. / Siggers, Jayda; Østergaard, Mette V.; Siggers, Richard H.; Skovgaard, Kerstin; Mølbak, Lars; Thymann, Thomas; Schmidt, Mette; Møller, Hanne Kristine; Purup, Stig; Fink, Lisbeth Nielsen; Frøkiær, Hanne; Boye, Mette; Sangild, Per T.; Bering, Stine B.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 304, No. 10, 2013, p. G864-G875.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  50. Published

    Predictions of Phase Separation in Three-Component Lipid Membranes by the MARTINI Force Field. / Davis, Ryan S.; Sunil Kumar, P. B.; Sperotto, Maria Maddalena; Laradji, Mohamed.

    In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, Vol. 117, 2013, p. 4072-4080.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  51. Published

    Production of fusarielins by Fusarium. / Sørensen, Jens Laurids; Akk, Elina; Thrane, Ulf; Giese, Henriette; Sondergaard, Teis Esben.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 206-211.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  52. Published

    Prognostic and Predictive Markers in Metastatic Renal Cell Carcinoma. / Khattak, Muhammad A.; Bakr, Farrah; Krzystanek, Marcin; Szallasi, Zoltan Imre; Gerlinger, Marco; Santos, Claudio; Swanton, Charles; Pickering, Lisa M.; Gore, Martin E.; Larkin, James M.G.

    In: Journal of Clinical Oncology, Vol. 31, No. 7, 2013, p. 20971-972.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  53. Published

    Protection of cod larvae from vibriosis by Phaeobacter spp.: A comparison of strains and introduction times. / D'Alvise, Paul; Lillebø, Siril; Wergeland, Heidrun I.; Gram, Lone; Bergh, Øivind.

    In: Aquaculture, Vol. 384-387, 2013, p. 82-86.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  54. Published

    Proteome Regulation during Olea europaea Fruit Development. / Bianco, Linda; Alagna, Fiammetta; Baldoni, Luciana; Finnie, Christine; Svensson, Birte; Perrotta, Gaetano.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e53563.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  55. Published

    Recent development of phosphorylases possessing large potential for oligosaccharide synthesis. / Nakai, Hiroyuki; Kitaoka, Motomitsu; Svensson, Birte; Ohtsubo, Ken’ichi.

    In: Current Opinion in Chemical Biology, Vol. 17, No. 2, 2013, p. 301-309.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  56. Published

    Reply to 'Mining electronic health records: an additional perspective'. / Jensen, Peter B.; Jensen, Lars J.; Brunak, Søren.

    In: Nature Reviews. Genetics, Vol. 14, No. 1, 2013, p. -.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  57. Published

    Rewiring Lactococcus lactis for Ethanol Production. / Solem, Christian; Dehli, Tore Ibsen; Jensen, Peter Ruhdal.

    In: Applied and Environmental Microbiology, Vol. 79, No. 8, 2013, p. 202512-2518.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  58. Published

    Screening the Biosphere: The Fungicolous Fungus Trichoderma phellinicola, a Prolific Source of Hypophellins, New 17-, 18-, 19-, and 20-Residue Peptaibiotics. / Röhrich, Christian René ; Iversen, Anita; Jaklitsch, Walter Michael; Voglmayr, Hermann; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; Döhren, Hans von ; Brückner, Hans; Degenkolb, Thomas.

    In: Chemistry & Biodiversity, Vol. 10, 2013, p. 787-812.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  59. Published

    Sodium Dodecyl Sulfate (SDS)-Loaded Nanoporous Polymer as Anti-Biofilm Surface Coating Material. / Li, Li; Molin, Søren; Yang, Liang; Ndoni, Sokol.

    In: International Journal of Molecular Sciences (Online), Vol. 14, No. 2, 2013, p. 3050-3064.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  60. Published

    Structural analysis of B-cell epitopes in antibody:protein complexes. / Kringelum, Jens Vindahl; Nielsen, Morten; Padkjær, Søren Berg; Lund, Ole.

    In: Molecular Immunology, Vol. 53, No. 1-2, 2013, p. 24-34.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  61. Published

    Targeted Metabolic Engineering Guided by Computational Analysis of Single-Nucleotide Polymorphisms (SNPs).. / Udatha, D B R K Gupta; Rasmussen, Simon; Sicheritz-Pontén, Thomas; Panagiotou, Gianni.

    In: Systems Metabolic Engineering : Methods and Protocols. Springer Science+Business Media B.V., 2013. (Methods in Molecular Biology, Vol. 985).

    Publication: Research - peer-review › Book chapter – Annual report year: 2013

  62. Published

    The biodiversity of Aspergillus section Flavi in brazil nuts: From rainforest to consumer. / Calderari, Thaiane O.; Iamanaka, Beatriz T.; Frisvad, Jens Christian; Pitt, John I.; Sartori, Daniele; Pereira, Jose Luiz; Fungaro, Maria Helena P.; Taniwaki, Marta H.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 267-272.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  63. Published

    The chemical interactome space between the human host and the genetically defined gut metabotypes. / Jacobsen, Ulrik Plesner; Nielsen, Henrik Bjørn; Hildebrand, Falk; Raes, Jeroen; Sicheritz-Pontén, Thomas; Kouskoumvekaki, Irene; Panagiotou, Gianni.

    In: I S M E Journal, Vol. 7, 2013, p. 730-742.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  64. Published

    The Sensitising Capacity of Intact beta-Lactoglobulin Is Reduced by Co-Administration with Digested beta-Lactoglobulin. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Madsen, Charlotte Bernhard.

    In: International Archives of Allergy and Immunology, Vol. 161, No. 1, 2013, p. 21-36.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  65. Published

    The Sensitising Capacity of Intact β-Lactoglobulin Is Reduced by Co-Administration with Digested β-Lactoglobulin. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Madsen, Charlotte Bernhard.

    In: International Archives of Allergy and Immunology, Vol. 161, No. 1, 2013, p. 21-36.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  66. Published

    The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk. / de Jong, Anne; Hansen, Morten Ejby; Kuipers, Oscar P.; Kilstrup, Mogens; Kok, Jan.

    In: P L o S One, Vol. 8, No. 1, 2013, p. -.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  67. Published

    Transcriptome Responses to Combinations of Stresses in Arabidopsis. / Rasmussen, Simon; Barah, Pankaj; Suarez-Rodriguez, Maria Cristina; Bressendorff, Simon; Friis, Pia; Costantino, Paolo; Bones, Atle M.; Nielsen, Henrik Bjørn; Mundy, John.

    In: Plant Physiology, Vol. 161, No. 4, 2013, p. 1783-1794.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  68. Published

    Two new Penicillium species Penicillium buchwaldii and Penicillium spathulatum, producing the anticancer compound asperphenamate.. / Frisvad, Jens Christian; Houbraken, Jos; Popma, Suuske; Samson, Robert A.

    In: F E M S Microbiology Letters, Vol. 339, No. 2, 2013, p. 77-92.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  69. Published

    Typing of Pseudomonas aeruginosa from hemorrhagic pneumonia in mink (Neovison vison). / Salomonsen, Charlotte Mark; Themudo, G. E.; Jelsbak, Lars; Molin, Søren; Høiby, N.; Hammer , Anne Sofie .

    In: Veterinary Microbiology, Vol. 163, No. 1-2, 2013, p. 103-109.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  70. 2012
  71. Published

    Microbial isoprenoid production. / Carlsen, Simon; Kielland-Brandt, Morten (Supervisor); Eliasson Lantz, Anna (Supervisor); Nielsen, Michael Lynge (Supervisor).

    Department of Systems Biology, DTU, 2012. 263 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  72. Published

    Mapping of secondary metabolites to their synthase genes in Aspergillus species. / Klejnstrup, Marie Louise; Larsen, Thomas Ostenfeld (Main supervisor); Gotfredsen, Charlotte Held (Supervisor); Mortensen, Uffe Hasbro (Supervisor).

    Department of Systems Biology, DTU, 2012. 306 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  73. Published

    Investigating genotype-phenotype relationships in Saccharomyces cerevisiae metabolic network through stoichiometric modeling. / Brochado, Ana Rita; Mortensen, Uffe Hasbro (Supervisor); Patil, Kiran Raosaheb (Supervisor).

    Department of Systems Biology, DTU, 2012. 165 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  74. Published

    Absorption difference between diacylglycerol oil and butter blend containing diacylglycerol oil. / Kristensen, Janni Brogaard; Jørgensen, Henry; Mu, Huiling.

    In: European Journal of Lipid Science and Technology, Vol. 114, No. 2, 2012, p. 146-152.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  75. Published

    A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens). / Hildebrand, Falk; Ebersbach, Tine; Nielsen, Henrik Bjørn; Li, Xiaoping; Sonne, Si Brask; dos Santos, Marcelo Bertalan Quintanilha; Dimitrov, Peter; Madsen, Lise; Qin, Junjie; Wang, Jun; Raes, Jeroen; Kristiansen, Karsten; Licht, Tine Rask.

    In: B M C Genomics, Vol. 13, No. 514, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  76. Published

    A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production. / Sautter, Robert; Ramos, Damaris; Schneper, Lisa; Ciofu, Oana; Wassermann, Tina; Koh, Chong-Lek; Heydorn, Arne; Hentzer, Morton; Høiby, Niels; Kharazmi, Arsalan; Molin, Søren; DeVries, Caroline A.; Ohman, Dennis E.; Mathee, Kalai.

    In: Gene, Vol. 498, No. 2, 2012, p. 242-253.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  77. Published

    A container. / Hansen, Preben Bøje (Inventor); Stubbe, Peter Reimer (Inventor).

    IPC No.: B65D43/02. Jul 26, 2012.

    Publication: Research › Patent – Annual report year: 2012

  78. Published

    Active Match Load Circuit Intended for Testing Piezoelectric Transformers. / Andersen, Thomas; Rødgaard, Martin Schøler; Andersen, Michael A. E.

    In: 6th IET International Conference on Power Electronics, Machines and Drives. 2012.

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  79. Published

    Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective.. / Folkesson, Anders; Jelsbak, Lars; Yang, Lei; Johansen, Helle Krogh; Ciofu, Oana; Høiby, Niels; Molin, Søren.

    In: Nature Reviews. Microbiology, Vol. 10, No. 12, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  80. Published

    Adaptive evolution of drug targets in producer and non-producer organisms. / Hansen, Bjarne Gram; Sun, Xin E.; Genee, Hans Jasper; Kaas, Christian Schrøder; Nielsen, Jakob Blæsbjerg; Frisvad, Jens Christian; Hedstrom, Lizbeth.

    In: Biochemical Journal, Vol. 441, No. 1, 2012, p. 219-226.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  81. Published

    A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation.. / Dalgaard, Marlene D; Weinhold, Nils; Edsgard, Stefan Daniel; Silver, Jeremy D; Pers, Tune Hannes; Nielsen, John E.; Jørgensen, Niels; Juul, Anders; Gerds, Thomas A.; Giwercman, Aleksander; Giwercman, Yvonne L.; Cohn-Cedermark, Gabriella; Virtanen, Helena E.; Toppari, Jorma; Daugaard, Gedske; Jensen, Thomas Skøt; Brunak, Søren; Rajpert-De Meyts, Ewa; Skakkebæk, Niels E; Leffers, Henrik; Gupta, Ramneek.

    In: Journal of Medical Genetics, Vol. 49, No. 1, 2012, p. 58-65.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  82. Published

    Ajoene, a Sulfur-Rich Molecule from Garlic, Inhibits Genes Controlled by Quorum Sensing. / Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus Ernst; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 5, 2012, p. 2314-2325.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  83. Published

    Analyzing the genomic variation of microbial cell factories in the era of “New Biotechnology”. / Herrgard, Markus; Panagiotou, Gianni.

    In: Computational and Structural Biotechnology Journal, Vol. 3, No. 4, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  84. Published

    Androgen receptor signalling in peritubular myoid cells is essential for normal differentiation and function of adult Leydig cells. / Welsh, M.; Moffat, L.; Belling, Kirstine Christensen; de Franca, L. R.; Segatelli, T. M.; Saunders, P. T. K.; Sharpe, R. M.; Smith, L. B.

    In: International Journal of Andrology, Vol. 35, No. 1, 2012, p. 25-40.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  85. Published

    A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines. / Polizzotto, Rachele; Andersen, Birgitte; Martini, Marta; Grisan, Simone; Assante, Gemma; Musetti, Rita.

    In: Journal of Microbiological Methods, Vol. 88, No. 1, 2012, p. 162-171.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  86. Published

    Applied systems biology - vanillin production in Saccharomyces cerevisiae. / Strucko, Tomas; Eriksen, Carsten; Nielsen, J.; Mortensen, Uffe Hasbro.

    In: The F E B S Journal (Online), Vol. 279, No. Supplement s1, 2012, p. 525-525.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  87. Published

    Aspergilli: Systems biology and industrial applications. / Knuf, Christoph; Nielsen, Jens.

    In: Biotechnology Journal, Vol. 7, No. 9, 2012, p. -.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  88. Published

    Aspergillus bertholletius sp. nov. from Brazil Nuts. / Taniwaki, Marta H.; Pitt, John I.; Iamanaka, Beatriz T.; Sartori, Daniele; Copetti, Marina V.; Balajee, Arun; Fungaro, Maria Helena P.; Frisvad, Jens Christian.

    In: P L o S One, Vol. 7, No. 8, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  89. Published

    Aspergillus hydrophobins - Identification, classification and characterization. / Jensen, Britt Guillaume; Nielsen, Kristian Fog (Main supervisor); Søndergaard, Ib (Supervisor); Pedersen, Mona Højgaard (Supervisor); Frisvad, Jens Christian (Supervisor); Jelsbak, Lars (Supervisor); Jacobsen, Susanne (Supervisor).

    Department of Systems Biology, DTU, 2012. 212 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  90. Published

    Association between chemical pattern in breast milk and congenital cryptorchidism: modelling of complex human exposures. / Krysiak-Baltyn, Konrad; Toppari, J.; Skakkebaek, N. E.; Jensen, Thomas Skøt; Virtanen, H. E.; Schramm, K.‐W.; Shen, Hao; Vartiainen, T.; Kiviranta, H.; Taboureau, Olivier ; Audouze, Karine Marie Laure; Brunak, S.; Main, K. M.

    In: International Journal of Andrology, Vol. 35, No. 3, 2012, p. 294-302.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  91. Published

    A Steered Molecular Dynamics Study of Binding and Translocation Processes in the GABA Transporter. / Skovstrup, Soren; David, Laurent; Taboureau, Olivier; Jorgensen, Flemming Steen.

    In: P L o S One, Vol. 7, No. 6, 2012, p. -.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  92. Published

    Atlantinone A, a meroterpenoid produced by Penicillium ribeum and several cheese associated Penicillium species. / Dalsgaard, Petur W.; Petersen, Bent O.; Duus, Jens Ø.; Zidorn, Christian; Frisvad, Jens Christian; Christophersen, Carsten; Larsen, Thomas Ostenfeld.

    In: Metabolites, Vol. 2, 2012, p. 214-220.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  93. Published

    Bacterial adaptive response to changing herbicide discharge rates in the streambed sediments impacted by a landfill. / Pazarbasi, Meric Batioglu; Bælum, Jacob; Pilloni, Giovanni; Larentis, Micheal; Jacobsen, Carsten S.; Lueders, Tillmann; Hansen, Lars H.; Aamand, Jens .

    2012. Poster session presented at 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Publication: Research - peer-review › Poster – Annual report year: 2012

  94. Published

    Bayesian prediction of bacterial growth temperature range based on genome sequences. / Jensen, Dan Børge; Vesth, Tammi Camilla; Hallin, Peter Fischer; Pedersen, Anders Gorm; Ussery, David.

    In: Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology. Vol. 13 2012. (B M C Genomics).

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  95. Published

    BDDCS Class Prediction for New Molecular Entities. / Broccatelli, Fabio; Cruciani, Gabriele; Benet, Leslie Z.; Oprea, Tudor.

    In: Molecular Pharmaceutics, Vol. 9, No. 3, 2012, p. 570-580.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  96. Published

    Binding Interactions Between α-glucans from Lactobacillus reuteri and Milk Proteins Characterised by Surface Plasmon Resonance. / Diemer, Silja Kej; Svensson, Birte; Babol, Linnéa N.; Cockburn, Darrell; Grijpstra, Pieter; Dijkhuizen, Lubbert; Folkenberg, Ditte M.; Garrigues, Christel; Ipsen, Richard H.

    In: Food Biophysics, Vol. 7, No. 3, 2012, p. 220-226.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  97. Published

    Bioconversion of crude glycerol feedstocks into ethanol by Pachysolen tannophilus. / Liu, Xiaoying; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Bioresource Technology, Vol. 104, 2012, p. 559-586.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  98. Published

    Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. / Schneider, Maria V.; Walter, Peter; Blatter, Marie-Claude; Watson, James; Brazas, Michelle D.; Rother, Kristian; Budd, Aidan; Via, Allegra; van Gelder, Celia W. G.; Jacob, Joachim; Fernandes, Pedro; Nyrönen, Tommi H.; De Las Rivas, Javier; Holberg Blicher, Thomas; Jimenez, Rafael C.; Loveland, Jane; McDowall, Jennifer; Jones, Phil; Vaughan, Brendan W.; Lopez, Rodrigo; Attwood, Teresa K.; Brooksbank, Catherine.

    In: Briefings in Bioinformatics, Vol. 13, No. 3, 2012, p. 383-389.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  99. Published

    Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets. / Ali, Amjad; Soares, Siomar C.; Santos, Anderson R.; Guimarães, Luis C.; Barbosa, Eudes; Almeida, Sintia S.; Abreu, Vinícius A.C.; Carneiro, Adriana R.; Ramos, Rommel T.J.; Bakhtiar, Syeda Marriam; Hassan, Syed S.; Ussery, David W.; On, Stephen; Silva, Artur; Schneider, Maria P.; Lage, Andrey P.; Miyoshi, Anderson; Azevedo, Vasco.

    In: Gene, Vol. 508, No. 2, 2012, p. 145-156.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  100. Published

    Cells, shared memory and breaking the PTM code.. / Creixell, Pau; Linding, Rune.

    In: Molecular Systems Biology, Vol. 8, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  101. Published

    Ceramide profile in hypohidrotic ectodermal dysplasia. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Agner, T.; Jemec, G. B. E.

    In: Clinical and Experimental Dermatology, Vol. 37, No. 2, 2012, p. 153-155.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  102. Published

    CERT depletion predicts chemotherapy benefit and mediates cytotoxic and polyploid‐specific cancer cell death through autophagy induction. / Lee, Alvin J. X.; Roylance, Rebecca; Sander, Jil; Gorman, Patricia; Endesfelder, David; Kschischo, Maik; Jones, Neil P.; East, Philip; Nicke, Barbara; Spassieva, Stefka; Obeid, Lina M.; Birkbak, Nicolai Juul; Szallasi, Zoltan; McKnight, Nicole C.; Rowan, Andrew J.; Speirs, Valerie; Hanby, Andrew M.; Downward, Julian; Tooze, Sharon A.; Swanton, Charles.

    In: Journal of Pathology, Vol. 226, No. 3, 2012, p. 482-494.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  103. Published

    Characterization of HIV-Specific CD4+T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage. / Buggert, Marcus; Norstrom, Melissa M.; Czarnecki, Chris; Tupin, Emmanuel; Luo, Ma; Gyllensten, Katarina; Sonnerborg, Anders; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, Annika C.

    In: P L o S One, Vol. 7, No. 7, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  104. Published

    Characterization of the AN6448 cluster in Aspergillus nidulans. / Nielsen, Jakob Blæsbjerg; Klejnstrup, Marie Louise; Khorsand-Jamal, Paiman; Holm, Dorte Koefoed; Nielsen, Michael Lynge; Kabat, Anna Monika; Rank, Christian; Gotfredsen, Charlotte Held; Larsen, T. O.; Mortensen, Uffe Hasbro.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1113-1113.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  105. Published

    Characterizing the binding motifs of 11 common human HLA‐DP and HLA‐DQ molecules using NNAlign. / Andreatta, Massimo; Nielsen, Morten.

    In: Immunology, Vol. 136, No. 3, 2012, p. 306-311.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  106. Published

    Chemical analysis of a genome wide polyketide synthase gene deletion library in Aspergillus nidulans. / Larsen, Thomas Ostenfeld; Klejnstrup, Marie Louise; Nielsen, Jakob Blæsbjerg; Holm, Dorte Koefoed; Petersen, Lene Maj; Klitgaard, Andreas; Nielsen, Kristian Fog; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    2012. Abstract from Directing Biosynthesis III, Nottingham, United Kingdom.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  107. Published

    Chemical and molecular characterization of Phomopsis and Cytospora-like endophytes from different host plants in Brazil. / Abreu, Lucas M.; Costa, Sarah S.; Pfenning, Ludwig H.; Takahashi, Jacqueline A.; Larsen, Thomas Ostenfeld; Andersen, Birgitte.

    In: Fungal Biology, Vol. 116, No. 2, 2012, p. 249-260.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  108. Published

    Children s health and its association with indoor environments in Danish homes and daycare centres – methods. / Clausen, Geo; Høst, A.; Toftum, Jørn; Bekö, Gabriel; Weschler, Charles J.; Callesen, M.; Buhl, S.; Ladegaard, M. B.; Langer, S.; Andersen, Birgitte; Sundell, Jan; Bornehag, Carl-Gustaf; Sigsgaard, T.

    In: Indoor Air, Vol. 22, 2012, p. 467-475.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  109. Published

    Chitin elicitation of natural product production in marine bacteria. / Månsson, Maria; Wietz, Matthias; Larsen, Thomas Ostenfeld; Gram, Lone.

    2012. Abstract from Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  110. Published

    Combating biofilms. / Yang, Liang; Liu, Yang; Wu, Hong; Song, Zhijun; Hoiby, Niels; Molin, Søren; Givskov, Michael.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, Sp. Iss. SI, 2012, p. 146-157.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  111. Published

    Cometin is a novel neurotrophic factor that promotes neurite outgrowth and neuroblast migration in vitro and supports survival of spiral ganglion neurons in vivo. / Jørgensen, Jesper Roland; Fransson, Anette; Fjord-Larsen, Lone; Thompson, Lachlan H.; Houchins, Jeffrey P.; Andrade, Nuno; Torp, Malene; Kalkkinen, Nisse; Andersson, Elisabet; Lindvall, Olle; Ulfendahl, Mats; Brunak, Søren; Johansen, Teit E.; Wahlberg, Lars U.

    In: Experimental Neurology, Vol. 233, No. 1, 2012, p. 172-181.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  112. Published

    Common and Distant Structural Characteristics of Feruloyl Esterase Families from Aspergillus oryzae. / Udatha, D. B. R. K. Gupta; Mapelli, Valeria; Panagiotou, Gianni; Olsson, Lisbeth.

    In: P L o S One, Vol. 7, No. 6, 2012, p. e39473.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  113. Published

    Comparative chemistry of Aspergillus oryzae (RIB40) and A. flavus (NRRL 3357). / Rank, Christian; Klejnstrup, Marie Louise; Petersen, Lene Maj; Kildgaard, Sara; Frisvad, Jens Christian; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld.

    In: Metabolites, Vol. 2, 2012, p. 39-56.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  114. Published

    Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera.. / Lukjancenko, Oksana; Ussery, David; Wassenaar, Trudy M.

    In: Microbial Ecology, Vol. 63, No. 3, 2012, p. 651-673.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  115. Published

    Comparison of laser diffraction and image analysis for measurement of Streptomyces coelicolor cell clumps and pellets.. / Rønnest, Nanna Petersen; Stocks, Stuart M; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology Letters, Vol. 34, No. 8, 2012, p. 1465-1473.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  116. Published

    Concepts in Mechanism Based Modeling. / Lund, Ole; Laugesen, Jakob Lund; Mosekilde, Erik.

    In: Biosimulation in Biomedical Research, Health Care and Drug Development. Springer-Verlag/Wien, 2012. p. 19-41.

    Publication: Research - peer-review › Book chapter – Annual report year: 2012

  117. Published

    Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.. / Nicolas, Pierre; Mäder, Ulrike; Dervyn, Etienne; Rochat, Tatiana; Leduc, Aurélie; Pigeonneau, Nathalie; Bidnenko, Elena; Marchadier, Elodie; Hoebeke, Mark; Aymerich, Stéphane; Becher, Dörte; Bisicchia, Paola; Botella, Eric; Delumeau, Olivier; Doherty, Geoff; Denham, Emma L; Fogg, Mark J; Fromion, Vincent; Goelzer, Anne; Hansen, Annette; Härtig, Elisabeth; Harwood, Colin R; Homuth, Georg; Jarmer, Hanne; Jules, Matthieu; Klipp, Edda; Le Chat, Ludovic; Lecointe, François; Lewis, Peter; Liebermeister, Wolfram; March, Anika; Mars, Ruben A T; Nannapaneni, Priyanka; Noone, David; Pohl, Susanne; Rinn, Bernd; Rügheimer, Frank; Sappa, Praveen K; Samson, Franck; Schaffer, Marc; Schwikowski, Benno; Steil, Leif; Stülke, Jörg; Wiegert, Thomas; Devine, Kevin M; Wilkinson, Anthony J; van Dijl, Jan Maarten; Hecker, Michael; Völker, Uwe; Bessières, Philippe; Noirot, Philippe.

    In: Science, Vol. 335, No. 6072, 2012, p. 1103-1106.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  118. Published

    Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes.. / Russell, Meaghan K; Longoni, Mauro; Wells, Julie; Maalouf, Faouzi I; Tracy, Adam A; Loscertales, Maria; Ackerman, Kate G; Pober, Barbara R; Hansen, Kasper Lage; Bult, Carol J; Donahoe, Patricia K.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 8, 2012, p. 2978-2983.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  119. Published

    Congenital diaphragmatic hernia interval on chromosome 8p23.1 characterized by genetics and protein interaction networks. / Longoni, Mauro; Hansen, Kasper Lage; Russell, Meaghan K.; Loscertales, Maria; Abdul‐Rahman, Omar A.; Baynam, Gareth; Bleyl, Steven B.; Brady, Paul D.; Breckpot, Jeroen; Chen, Chih P.; Devriendt, Koenraad; Gillessen‐Kaesbach, Gabriele; Grix, Arthur W.; Rope, Alan F.; Shimokawa, Osamu; Strauss, Bernarda; Wieczorek, Dagmar; Zackai, Elaine H.; Coletti, Caroline M.; Maalouf, Faouzi I.; Noonan, Kristin M.; Park, Ji H.; Tracy, Adam A.; Lee, Charles; Donahoe, Patricia K.; Pober, Barbara R.

    In: American Journal of Medical Genetics. Part A, Vol. 158A, No. 12, 2012, p. 3148-3158.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  120. Published

    Context matters — the complex interplay between resistome genotypes and resistance phenotypes. / Dantas, Gautam; Sommer, Morten.

    In: Current Opinion in Microbiology, Vol. 15, No. 5, 2012, p. 577-582.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  121. Published

    Defining the Pseudomonas Genus: Where Do We Draw the Line with Azotobacter?. / Özen, Asli Ismihan; Ussery, David.

    In: Microbial Ecology in Health & Disease, Vol. 63, No. 2, 2012, p. 239-248.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  122. Published

    Degradation of the starch components amylopectin and amylose by barley α-amylase 1: Role of surface binding site 2. / Nielsen, Jonas Willum; Kramhøft, Birte; Bozonnet, Sophie; Abou Hachem, Maher ; Stipp, Susan Louise Svane; Svensson, Birte; Willemoes, Martin.

    In: Archives of Biochemistry and Biophysics, Vol. 528, No. 1, 2012, p. 1-6.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  123. Published

    Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment. / Rau, Martin H.; Marvig, Rasmus Lykke; Ehrlich, Garth D.; Molin, Søren; Jelsbak, Lars.

    In: Environmental Microbiology, Vol. 14, No. 8, 2012, p. 2200-2211.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  124. Published

    Delimitation and characterisation of Talaromyces purpurogenus and related species. / Yilmaz, N.; Houbraken, J.; Hoekstra, E. S.; Frisvad, Jens Christian; Visagie, C. M.; Samson, Ramona.

    In: Persoonia, Vol. 29, 2012, p. 39-54.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  125. Published

    Describing the Peptide Binding Specificity of HLA-C. / Rasmussen, Michael; Harndahl, Mikkel Nors; Nielsen, Morten; Buus, Soren; Stryhn, Anette.

    2012. Abstract from 99th Annual Meeting of the American-Association-of-Immunologists, Boston MA, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  126. Published

    Designing bovine T cell vaccines via reverse immunology. / Nene, Vishvanath; Svitek, Nicholas; Toye, Philip; Golde, William T.; Barlow, John; Harndahl, Mikkel Nors; Buus, Soren; Nielsen, Morten.

    In: Ticks and Tick-borne Diseases, Vol. 3, No. 3, 2012, p. 188-192.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  127. Published

    Development of a screening approach for exploring cell factory potential through metabolic flux analysis and physiology. / Knudsen, Peter Boldsen; Nielsen, Kristian Fog; Thykær, Jette.

    In: New Biotechnology, 2012, p. S212.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  128. Published

    Dietary Tools To Modulate Glycogen Storage in Gilthead Seabream Muscle: Glycerol Supplementation. / Silva, Tomé S.; Matos, Elisabete; Cordeiro, Odete D.; Colen, Rita; Wulff, Tune; Sampaio, Eduardo; Sousa, Vera; Valente, Luisa M. P.; Gonçalves, Amparo; Silva, Joana M. G.; Bandarra, Narcisa; Nunes, Maria Leonor; Dinis, Maria Teresa; Dias, Jorge; Jessen, Flemming; Rodrigues, Pedro M.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 42, 2012, p. 10613–10624.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  129. Published

    Differential Protein Pathways in 1,25-Dihydroxyvitamin D-3 and Dexamethasone Modulated Tolerogenic Human Dendritic Cells. / Ferreira, Gabriela Bomfim; Kleijwegt, Fleur S.; Waelkens, Etienne; Hansen, Kasper Lage; Nikolic, Tatjana; Hansen, Daniel Aaen; Workman, Christopher; Roep, Bart O.; Overbergh, Lut; Mathieu, Chantal.

    In: Journal of Proteome Research, Vol. 11, No. 2, 2012, p. 941-971.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  130. Published

    Digested Ara h 1 Loses Sensitizing Capacity When Separated into Fractions. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Rigby, Neil M.; Mills, E. N. Clare; Madsen, Charlotte Bernhard.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 11, 2012, p. 2934-2942.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  131. Published

    Digested BLG can induce tolerance when co-administered with intact BLG in Brown Norway rats. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Madsen, Charlotte Bernhard.

    2012. Abstract from 2th Pediatric Allergy & Asthma Meeting, Barcelona, Spain.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  132. Published

    Discovery of novel secondary metabolites in Aspergillus aculeatus. / Petersen, Lene Maj; Holm, Dorte Koefoed; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1159-1160.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  133. Published

    Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction. / Teppa, Elin; Wilkins, Angela D.; Nielsen, Morten; Marino Buslje, Cristina.

    In: B M C Bioinformatics, Vol. 13, 2012, p. -.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  134. Published

    Disparate SAR Data of Griseofulvin Analogues for the Dermatophytes Trichophyton mentagrophytes, T. rubrum, and MDA-MB-231 Cancer Cells. / Rønnest, Mads Holger; Raab, Marc S.; Anderhub, Simon; Boesen, Sven; Krämer, Alwin; Larsen, Thomas Ostenfeld; Clausen, Mads Hartvig.

    In: Journal of Medicinal Chemistry, Vol. 55, No. 2, 2012, p. 652-660.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  135. Published

    Dissecting molecular interactions involved in recognition of target disulfides by the barley thioredoxin system. / Björnberg, Olof; Maeda, Kenji; Svensson, Birte; Hägglund, Per.

    In: Biochemistry, Vol. 51, No. 49, 2012, p. 9930-9939.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  136. Published

    Divergent pro-inflammatory profile of human dendritic cells in response to commensal and pathogenic bacteria associated with the airway microbiota.. / Larsen, Jeppe Madura; Steen-Jensen, Daniel Bisgaard; Laursen, Janne Marie; Søndergaard, Jonas Nørskov; Musavian, Hanieh Sadat; Butt, Tariq Mahmood; Pedersen, Susanne Brix.

    In: P L o S One, Vol. 7, No. 2, 2012, p. e31976.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  137. Published

    Draft Genome Sequence of the Yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460. / Liu, Xiaoying ; Kaas, Rolf Sommer; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Eukaryotic Cell (Online Edition), Vol. 11, No. 6, 2012, p. 827.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  138. Published

    Drug Repurposing: Far Beyond New Targets for Old Drugs. / Oprea, Tudor; Mestres, J.

    In: A A P S Journal, Vol. 14, No. 4, 2012, p. 759-763.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  139. Published

    Dynamic control of gene expression in Saccharomyces cerevisiae engineered for the production of plant sesquitepene α-santalene in a fed-batch mode. / Scalcinati, Gionata; Knuf, Christoph; Partow, Siavash; Chen, Yun; Maury, Jerome; Schalk, Michel; Daviet, Laurent; Nielsen, Jens; Siewers, Verena.

    In: Metabolic Engineering, Vol. 14, No. 2, 2012, p. 91-103.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  140. Published

    Dynamics in population heterogeneity during batch and continuous fermentation of Saccharomyces cerevisiae. / Heins, Anna-Lena; Lencastre Fernandes, Rita; Lundin, L.; Carlquist, M.; Sörensen, S.; Gernaey, Krist; Eliasson Lantz, Anna.

    In: New Biotechnology, Vol. 29S, 2012, p. S199-S200.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  141. Published

    Early genetic adaptation associated with chronic pseudomonas aeruginosa airways infection. / Johansen, H. K.; Aanaes, K.; Pressler, Tacjana; Skov, M.; Nielsen, K. G.; Ciofu, Oana; Buchwald, C.; Hoiby, N.; Molin, Søren.

    In: Pediatric Pulmonology, Vol. 47, No. S35, 2012, p. 328-329.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  142. Published

    Effect of brine marination on survival and growth of spoilage and pathogenic bacteria during processing and subsequent storage of ready-to-eat shrimp (Pandalus borealis). / Mejlholm, Ole; Devitt, Tina D.; Dalgaard, Paw.

    In: International Journal of Food Microbiology, Vol. 157, No. 1, 2012, p. 16-27.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  143. Published

    Effect of pulsed electric field on the germination of barley seeds. / Dymek, Katarzyna; Dejmek, Petr; Panarese, Valentina; Vicente, António A.; Wadsö, Lars; Finnie, Christine; Galindo, Federico Gómez.

    In: L W T- Food Science and Technology, Vol. 47, No. 1, 2012, p. 161-166.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  144. Published

    Effects of Preslaughter Stress Levels on the Post-mortem Sarcoplasmic Proteomic Profile of Gilthead Seabream Muscle. / Silva, Tomé Santos; Cordeiro, Odete D; Matos, Elisabete D.; Wulff, Tune; Dias, Jorge P; Jessen, Flemming; Rodrigues, Pedro M.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 37, 2012, p. 9443-9453.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  145. Published

    Elucidation of the biosynthesis of meroterpenoid yanuthone D in Aspergillus Niger. / Holm, Dorte Koefoed; Petersen, Lene Maj; Klitgaard, Andreas; Jarczynska, Zofia Dorota; Larsen, Thomas Ostenfeld; Mortensen, Uffe Hasbro.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1069-1069.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  146. Published

    Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species. / Houbraken, J.; Spierenburg, H.; Frisvad, Jens Christian.

    In: Antonie van Leeuwenhoek, Vol. 101, No. 2, 2012, p. 403-421.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  147. Published

    Engineering strategies aimed at control of acidification rate and product formation of lactic acid bacteria. / Martinussen, Jan; Solem, Christian; Holm, Anders Koefoed; Jensen, Peter Ruhdal.

    In: Current Opinion in Biotechnology, Vol. 24, 2012, p. 1-3.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  148. Published

    Enzymology and Structure of the GH13_31 Glucan 1,6-α-Glucosidase That Confers Isomaltooligosaccharide Utilization in the Probiotic Lactobacillus acidophilus NCFM. / Møller, Marie Sofie; Fredslund, Folmer; Majumder, Avishek; Nakai, Hiroyuki; Poulsen, Jens-Christian Navarro; Lo Leggio, Leila; Svensson, Birte; Abou Hachem, Maher .

    In: Journal of Bacteriology, Vol. 194, No. 16, 2012, p. 4249-4259.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  149. Published

    Erratum to “Food fermentations: microorganisms with technological beneficial use” [International Journal of Food Microbiology 154 (2012) 87–97]. / Bourdichon, François; Casaregola, Serge; Farrokh, Choreh; Frisvad, Jens Christian; Gerds, Monica L.; Hammes, Walter P.; Harnett, James; Huys, Geert; Laulund, Svend; Ouwehand, Arthur; Powell, Ian B.; Prajapati, Jashbhai B.; Seto, Yasuyuki; Ter Schure, Eelko; Van Boven, Aart; Vankerckhoven, Vanessa; Zgoda, Annabelle; Tuijtelaars, Sandra; Hansen, Egon Bech.

    In: International Journal of Food Microbiology, Vol. 156, No. 301, 2012.

    Publication: Research - peer-review › Comment/debate – Annual report year: 2012

  150. Published

    Established and Emerging Trends in Computational Drug Discovery in the Structural Genomics Era. / Taboureau, Olivier; Baell, Jonathan B.; Fernández-Recio, Juan; Villoutreix, Bruno O.

    In: Chemistry & Biology, Vol. 19, No. 1, 2012, p. 29-41.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  151. Published

    Establishing a high throughput method for medium optimization – a case study using Streptomyces lividans as host for production of heterologous protein. / Rattleff, Stig; Thykaer, Jette; Lantz, Anna Eliasson.

    In: New Biotechnology, Vol. 29S, 2012, p. S50.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  152. Published

    Establishing new microbial cell factories for sustainable bioprocesses. / Workman, Mhairi; Holt, Philippe; Liu, Xiaoying .

    In: New Biotechnology, Vol. 29S, 2012, p. S75.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  153. Published

    Establishment of tolerance to commensal bacteria requires a complex microbiota and is accompanied by decreased intestinal chemokine expression. / Fink, Lisbeth Nielsen; Metzdorff, S. B.; Zeuthen, Louise; Nellemann, Christine Lydia; Kristensen, Matilde Bylov; Licht, Tine Rask; Frøkiær, H.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 302, No. 1, 2012, p. G55-G65.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  154. Published

    Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes. / Kaas, Rolf Sommer; Rundsten, Carsten Friis; Ussery, David; Aarestrup, Frank Møller.

    In: B M C Genomics, Vol. 13, No. 1, 2012, p. 577.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  155. Published

    European freshwater VHSV genotype Ia isolates divide into two distinct subpopulations. / Kahns, Søren; Skall, Helle Frank; Kaas, Rolf Sommer; Korsholm, H.; Jensen, Ann Britt Bang; Jonstrup, Søren Peter; Dodge, M. J.; Einer-Jensen, Katja; Stone, D.; Olesen, Niels Jørgen.

    In: Diseases of Aquatic Organisms, Vol. 99, No. 1, 2012, p. 23-35.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  156. Published

    Evaluation of cell factory performance through determination of intracellular metabolites using LC-MS/MS. / Magdenoska, Olivera; Martinussen, Jan; Nielsen, Kristian Fog; Thykær, Jette.

    In: New Biotechnology, Vol. 29S, 2012.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  157. Published

    Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection. / Hansen, Susse Kirkelund; Rau, Martin Holm; Johansen, Helle Krogh; Ciofu, Oana; Jelsbak, Lars; Yang, Lei; Folkesson, Anders; Jarmer, Hanne Østergaard; Aanæs, Kasper; von Buchwald, Christian; Høiby, Niels; Molin, Søren.

    In: I S M E Journal, Vol. 6, No. 1, 2012, p. 31.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  158. Published

    Evolutionary dynamics of pseudomonas aeruginosa in CF. / Molin, Soren; Jelsbak, Lars; Johansen, Helle; Hoiby, Niels.

    In: Pediatric Pulmonology, Vol. 47, 2012, p. 152-153.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  159. Published

    Evolutionary engineering of Saccharomyces cerevisiae for efficient aerobic xylose consumption.. / Scalcinati, Gionata ; Otero, José Manuel; Van Vleet, Jennifer R. H.; Jeffries, Thomas W.; Olsson, Lisbeth; Nielsen, Jens.

    In: F E M S Yeast Research, Vol. 12, No. 5, 2012, p. 582-597.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  160. Published

    Examining the Potential of Plasma-Assisted Pretreated Wheat Straw for Enzyme Production by Trichoderma reesei. / Rodríguez Gómez, Divanery; Lehmann, Linda Olkjær; Schultz-Jensen, Nadja; Bjerre, Anne Belinda; Hobley, Timothy John.

    In: Applied Biochemistry and Biotechnology, Vol. 166, No. 8, 2012, p. 2051-2063.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  161. E-pub ahead of print

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  162. Published

    Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. / Johnson, Timothy J.; Bielak, Eliza Maria; Fortini, Daniela; Hansen, Lars Hestbjerg; Hasman, Henrik; Debroy, Chitrita; Nolan, Lisa K; Carattoli, Alessandra.

    In: Plasmid, Vol. 68, No. 1, 2012, p. 43-50.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  163. Published

    Experimental poisoning by Baccharis megapotamica var. weirii in buffalo. / Oliveira-Filho, José C.; Carmo, Priscila M.S.; Iversen, Anita; Nielsen, Kristian Fog; Barros, Claudio S. L.

    In: Pesquisa Veterinaria Brasileira, Vol. 32, No. 5, 2012, p. 383-390.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  164. Published

    Fish intake, erythrocyte n-3 fatty acid status and metabolic health in Danish adolescent girls and boys. / Lauritzen, Lotte; Harsløf, Laurine B. S.; Hellgren, Lars; Pedersen, Maiken Højgaard; Mølgaard, Christian; Michaelsen, Kim F.

    In: British Journal of Nutrition, Vol. 107, 2012, p. 697-704.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  165. Published

    Fitting the complexity of GPCRs modulation into simple hypotheses of ligand design. / Custodi, Chiara; Nuti, Roberto; Oprea, Tudor; Macchiarulo, Antonio.

    In: Journal of Molecular Graphics and Modelling, Vol. 38, 2012, p. 70-81.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  166. Published

    Flip-Flop of Steroids in Phospholipid Bilayers: Effects of the Chemical Structure on Transbilayer Diffusion. / Parisio, Giulia; Sperotto, Maria Maddalena; Ferrarini, Alberta.

    In: American Chemical Society. Journal, Vol. 134, No. 29, 2012, p. 12198-12208.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  167. Published

    Food as a Source for Quorum Sensing Inhibitors: Iberin from Horseradish Revealed as a Quorum Sensing Inhibitor of Pseudomonas aeruginosa. / Jakobsen, Tim Holm; Bragason, Steinn Kristinn; Phipps, Richard Kerry; Christensen, Louise Dahl; van Gennip, Maria; Alhede, Morten; Skindersoe, Mette; Larsen, Thomas Ostenfeld; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Applied and Environmental Microbiology, Vol. 78, No. 7, 2012, p. 2410-2421.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  168. Published

    Food fermentations: Microorganisms with technological beneficial use. / Bourdichon, François; Casaregola, Serge; Farrokh, Choreh; Frisvad, Jens Christian; Gerds, Monica L.; Hammes, Walter P.; Harnett, James; Huys, Geert; Laulund, Svend; Ouwehand, Arthur; Powell, Ian B.; Prajapati, Jashbhai B.; Seto, Yasuyuki; Ter Schure, Eelko; Van Boven, Aart; Vankerckhoven, Vanessa; Zgoda, Annabelle; Tuijtelaars, Sandra; Hansen, Egon Bech.

    In: International Journal of Food Microbiology, Vol. 154, No. 3, 2012, p. 87-97.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  169. Published

    From Genome Sequence to Taxonomy - A Skeptic’s View. / Özen, Asli Ismihan; Vesth, Tammi Camilla; Ussery, David.

    In: The Prokaryotes. ed. / Rosenberg E.2012 : Springer Berlin Heidelberg, 2012.

    Publication: Research - peer-review › Book chapter – Annual report year: 2012

  170. Published

    From Viral genome to specific peptide epitopes - Methods for identifying porcine T cell epitopes based on in silico predictions, in vitro identification and ex vivo verification. / Pedersen, Lasse Eggers; Rasmussen, Michael ; Harndahl, Mikkel ; Nielsen, Morten; Buus, Søren; Jungersen, Gregers.

    2012. Abstract from 4th European Veterinary Immunology Workshop (EVIW), Edinburgh, United Kingdom.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  171. Published

    Functional and phenotypic profiling of innate immunity during Salmonella infection. / Sørensen, Rikke Brandt; Pedersen, Susanne Brix.

    Kgs. Lyngby : Technical University of Denmark, 2012. 128 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2012

  172. Published

    Fungal natural products targeting chronic lymphocytic leukemia. / Bladt, Tanja Thorskov; Kildgaard, Sara; Knudsen, Peter Boldsen; Gotfredsen, Charlotte Held; Duerr, C.; Seiffert, M.; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1158-1158.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  173. Published

    Fungal Origins of the Bicyclo[2.2.2]diazaoctane Ring System of Prenylated Indole Alkaloids. / Finefield, Jennifer M.; Frisvad, Jens C.; Sherman, David H.; Williams, Robert M.

    In: Journal of Natural Products, Vol. 75, No. 4, 2012, p. 812-833.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  174. Published

    Gene Dose Effects of GSTM1, GSTT1 and GSTP1 Polymorphisms on Outcome in Childhood Acute Lymphoblastic Leukemia. / Borst, Louise; Buchard, Anders; Rosthoj, Susanne; Wesolowska, Agata; Wehner, Peder Skov; Wesenberg, Finn; Dalhoff, Kim; Schmiegelow, Kjeld.

    In: Journal of Pediatric Hematology / Oncology, Vol. 34, No. 1, 2012, p. 38-42.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  175. Published

    Gene prioritization for livestock diseases by data integration. / Jiang, Li; Sørensen, Peter; Thomsen, Bo Stjerne; Edwards, Stefan McKinnon; Skarman, Axel; Røntved, Christine Maria; Lund, Mogens Sandø; Workman, Christopher T.

    In: Physiological Genomics, Vol. 44, No. 5, 2012, p. 305-317.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  176. Published

    Gene Sequence Based Clustering Assists in Dereplication of Pseudoalteromonas luteoviolacea Strains with Identical Inhibitory Activity and Antibiotic Production. / Vynne, Nikolaj Grønnegaard; Månsson, Maria; Gram, Lone.

    In: Marine Drugs, Vol. 10, No. 8, 2012, p. 1729-1740.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  177. Published

    Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development. / Hansen, Kasper Lage; Greenway, Steven C.; Rosenfeld, Jill A.; Wakimoto, Hiroko; Gorham, Joshua M.; Segrè, Ayellet V.; Roberts, Amy E.; Smoot, Leslie B.; Pu, William T.; C. Pereira, Alexandre; Mesquita, Sonia M.; Tommerup, Niels; Brunak, Søren; Ballif, Blake C.; Shaffer, Lisa G.; Donahoe, Patricia K.; Daly, Mark J.; Seidman, Jonathan G.; Seidman, Christine E.; Larsen, Lars.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 35, 2012, p. 14035-14040.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  178. Published

    Genetics of Polyketide Metabolism in Aspergillus nidulans. / Klejnstrup, Marie L.; Frandsen, Rasmus John Normand; Holm, Dorte Koefoed; Nielsen, Morten Thrane; Mortensen, Uffe Hasbro; Larsen, Thomas Ostenfeld; Nielsen, Jakob Blæsbjerg.

    In: Metabolites, Vol. 2, No. 1, 2012, p. 100-133.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  179. Published

    Genome‐scale metabolic representation of Amycolatopsis balhimycina. / Vongsangnak, Wanwipa; Figueiredo, Luís Filipe; Förster, Jochen; Weber, Tilmann; Thykaer, Jette; Stegmann, Evi; Wohlleben, Wolfgang; Nielsen, Jens.

    In: Biotechnology and Bioengineering (Print), Vol. 109, No. 7, 2012, p. 1798-1807.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  180. Published

    Genome‐wide analysis of cytogenetic aberrations in ETV6/RUNX1‐positive childhood acute lymphoblastic leukaemia. / Borst, Louise; Wesolowska, Agata; Joshi, Tejal; Borup, Rehannah; Nielsen, Finn; Andersen, Mette K.; Jonsson, Olafur G.; Wehner, Peder Skov; Wesenberg, Finn; Frost, Britt‐Marie; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: British Journal of Haematology, Vol. 157, No. 4, 2012, p. 476-482.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  181. Published

    Genome‐wide identification of novel small RNAs in Pseudomonas aeruginosa. / Gómez Lozano, María; Marvig, Rasmus Lykke; Molin, Søren; Long, Katherine.

    In: Environmental Microbiology, Vol. 14, No. 8, 2012, p. 2006-2016.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  182. Published

    Genomic variation in Salmonella enterica core genes for epidemiological typing. / Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Rundsten, Carsten Friis; Aarestrup, Frank Møller; Ussery, David.

    In: B M C Genomics, Vol. 13, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  183. Published

    GF-15, a Novel Inhibitor of Centrosomal Clustering, Suppresses Tumor Cell Growth In Vitro and In Vivo. / Raab, Marc S.; Breitkreutz, Iris; Anderhub, Simon; Rønnest, Mads Holger; Leber, Blanka; Larsen, Thomas Ostenfeld; Weiz, Ludmila; Konotop, Gleb; Hayden, Patrick J.; Podar, Klaus; Fruehauf, Johannes; Nissen, Felix; Mier, Walter; Haberkorn, Uwe; Ho, Anthony D.; Goldschmidt, Hartmut; Anderson, Kenneth C.; Clausen, Mads Hartvig; Krämer, Alwin.

    In: Cancer Research, Vol. 72, No. 20, 2012, p. 5374-5385.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  184. Published

    Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.. / Buescher, Joerg Martin; Liebermeister, Wolfram; Jules, Matthieu; Uhr, Markus; Muntel, Jan; Botella, Eric; Hessling, Bernd; Kleijn, Roelco Jacobus; Le Chat, Ludovic; Lecointe, François; Mäder, Ulrike; Nicolas, Pierre; Piersma, Sjouke; Rügheimer, Frank; Becher, Dörte; Bessieres, Philippe; Bidnenko, Elena; Denham, Emma L; Dervyn, Etienne; Devine, Kevin M; Doherty, Geoff; Drulhe, Samuel; Felicori, Liza; Fogg, Mark J; Goelzer, Anne; Hansen, Annette; Harwood, Colin R; Hecker, Michael; Hubner, Sebastian; Hultschig, Claus; Jarmer, Hanne; Klipp, Edda; Leduc, Aurélie; Lewis, Peter; Molina, Frank; Noirot, Philippe; Peres, Sabine; Pigeonneau, Nathalie; Pohl, Susanne; Rasmussen, Simon; Rinn, Bernd; Schaffer, Marc; Schnidder, Julian; Schwikowski, Benno; Van Dijl, Jan Maarten; Veiga, Patrick; Walsh, Sean; Wilkinson, Anthony J; Stelling, Jörg; Aymerich, Stéphane; Sauer, Uwe.

    In: Science, Vol. 335, No. 6072, 2012, p. 1099-1103.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  185. Published

    Group a Pfemp1 functional domains bind icam1 and induce cross-reactive and adhesion inhibitory antibodies during malaria infections. / Bengtsson, A.; Jørgensen, L.; Rask, Thomas Salhøj; Olsen, R. W.; Andersen, M. A.; Turner, L.; Theander, T. G. ; Higins, M. K.; Craig, A.; Brown, A.; Christoffersen, S.; Jensen, A. T. R.

    In: Joint Spring Symposium 2012 - Double burden of disease – how parasites interact with each other, their host and the society: Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. Danish Society for Parasitology, 2012. p. 9.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2012

  186. Published

    Hemorrhagic pneumonia in mink caused by Pseudomonas aeruginosa. / Salomonsen, Charlotte Mark; Boye, Mette (Main supervisor); Høiby, Niels (Supervisor); Molin, Søren (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 105 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  187. Published

    Heterogeneity in recombinant protein production. / Schalén, Martin; Johanson, Ted; Lundin, Luisa; Sørensen, Søren; Eliasson Lantz, Anna.

    In: New Biotechnology, Vol. 29S, 2012, p. S78.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  188. Published

    How well do the substrates KISS the enzyme? Molecular docking program selection for feruloyl esterases. / Udatha, D. B. R. K. Gupta; Sugaya, Nobuyoshi; Olsson, Lisbeth; Panagiotou, Gianni.

    In: Scientific Reports, Vol. 2, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  189. Published

    Hyperactivity of the Ero1α Oxidase Elicits Endoplasmic Reticulum Stress but No Broad Antioxidant Response. / Hansen, Henning Gram; Schmidt, Jonas Damgard; Soltoft, Cecilie Lutzen; Ramming, Thomas; Geertz-Hansen, Henrik Marcus; Christensen, Brian; Sorensen, Esben Skipper; Juncker, Agnieszka; Appenzeller-Herzog, Christian; Ellgaard, Lars.

    In: Journal of Biological Chemistry, Vol. 287, No. 47, 2012, p. 39513-39523.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  190. Published

    Hypopulvins, novel peptaibiotics from the polyporicolous fungus Hypocrea pulvinata, are produced during infection of its natural hosts. / Röhrich, Christian René; Iversen, Anita; Jaklitsch, Walter Michael; Voglmayr, Hermann; Berg, Albrecht; Dörfelt, Heinrich; Thrane, Ulf; Vilcinskas, Andreas; Nielsen, Kristian Fog; von Döhren, Hans; Brückner, Hans; Degenkolb, Thomas.

    In: Fungal Biology, Vol. 116, No. 12, 2012, p. 1219-1231.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  191. Published

    Identification of acquired antimicrobial resistance genes. / Zankari, Ea; Hasman, Henrik; Cosentino, Salvatore; Vestergaard, Martin; Rasmussen, Simon; Lund, Ole; Aarestrup, Frank Møller; Larsen, Mette Voldby.

    In: Journal of Antimicrobial Chemotherapy, Vol. 67, No. 11, 2012, p. 2640-2644.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  192. Published

    Identification of a Novel UTY‐Encoded Minor Histocompatibility Antigen. / Mortensen, B. K.; Rasmussen, A. H.; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Braendstrup, P.; Harndahl, Mikkel Nors; Rasmussen, M.; Buus, S.; Stryhn, A.; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 76, No. 2, 2012, p. 141-150.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  193. Published

    Identification of a Transcription Factor Controlling pH-Dependent Organic Acid Response in Aspergillus niger.. / Poulsen, Lars; Andersen, Mikael Rørdam; Lantz, Anna Eliasson; Thykaer, Jette.

    In: P L o S One, Vol. 7, No. 12, 2012, p. e50596.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  194. Published

    Identification of cytochrome P450 2D6 and 2C9 substrates and inhibitors by QSAR analysis. / Jónsdóttir, Svava Ósk; Ringsted, Tine; Nikolov, Nikolai G.; Dybdahl, Marianne; Wedebye, Eva Bay; Niemelä, Jay R.

    In: Bioorganic & Medicinal Chemistry, Vol. 20, No. 6, 2012, p. 2042-2053.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  195. Published

    Identification of Genes Important for Growth of Asymptomatic Bacteriuria Escherichia coli in Urine. / Vejborg, Rebecca Munk; de Evgrafov, Mari Cristina Rodriguez; Phan, Minh Duy; Totsika, Makrina; Schembri, Mark; Hancock, Viktoria .

    In: Infection and Immunity, Vol. 80, No. 9, 2012, p. 3179-3188.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  196. E-pub ahead of print

    Identification of peptides from foot-and-mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA) alleles, SLA-1*0401 and SLA-2*0401. / Pedersen, Lasse Eggers; Harndahl, M.; Nielsen, Morten; Patch, J. R.; Jungersen, Gregers; Buus, S.; Golde, W. T.

    In: Animal Genetics, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  197. Published

    Immune epitope database analysis resource. / Kim, Yohan; Ponomarenko, Julia; Zhu, Zhanyang; Tamang, Dorjee; Wang, Peng; Greenbaum, Jason; Lundegaard, Claus; Sette, Alessandro; Lund, Ole; Bourne, Philip E.; Nielsen, Morten; Peters, Bjoern.

    In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W525-W530.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  198. Published

    Immunogenicity of Mycobacterium avium subsp. paratuberculosis specific peptides for inclusion in a subunit vaccine against paratuberculosis. / Mikkelsen, Heidi; Tollefsen, S.; Olsen, I.; Aagaard, C.; Lundegaard, Claus; Jungersen, Gregers.

    2012. Abstract from 4th European Veterinary Immunology Workshop (EVIW), Edinburgh, United Kingdom.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  199. Published

    Impact of stoichiometry representation on simulation of genotype-phenotype relationships in metabolic networks.. / Brochado, Ana Rita; Andrejev, Sergej; Maranas, Costas D.; Patil, Kiran R.

    In: P L o S Computational Biology, Vol. 8, No. 11, 2012, p. e1002758.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  200. Published

    Implementing an online tool for genome-wide validation of survival-associated biomarkers in ovarian-cancer using microarray data from 1287 patients. / Győrffy, Balázs; Lánczky, András; Szállási, Zoltán.

    In: Endocrine - Related Cancer, Vol. 19, No. 2, 2012, p. 197-208.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  201. Published

    Improved detection of Salmonella through the optimized use of DNA polymerases in real-time PCR. / Löfström, Charlotta; Søndergaard, Mette Sofie Rousing; Josefsen, Mathilde Hartmann; Al-Habib, Zahra Fares Sayer; Hoorfar, Jeffrey.

    2012. Poster session presented at 23rd International ICFMH Symposium, FoodMicro 2012, Istanbul, Turkey.

    Publication: Research - peer-review › Poster – Annual report year: 2012

  202. Published

    Improved detection of Salmonella through the optimized use of DNA polymerases in real-time PCR. / Löfström, Charlotta; Søndergaard, Mette Sofie Rousing; Josefsen, Mathilde Hartmann; Al-Habib, Zahra Fares Sayer; Hoorfar, Jeffrey.

    In: XXIII FoodMicro 2012: Abstract Book. ed. / Dilek Heperkan; Funda Karbancioglu-Guler; Ceren Daskaya-Dikmen. Istanbul : Istanbul Technical University, 2012. p. 319.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2012

  203. Published

    Improved wound care product. / Kirketerp-Møller, Klaus (Inventor); Givskov, Michael Christian (Inventor); Bjarnsholt, Thomas (Inventor).

    IPC No.: A61K47/02. Oct 26, 2012.

    Publication: Research › Patent – Annual report year: 2012

  204. Published

    Improving the prediction of the brain disposition for orally administered drugs using BDDCS. / Broccatelli, Fabio; Larregieu, Caroline A.; Cruciani, Gabriele; Oprea, Tudor; Benet, Leslie Z.

    In: Advanced Drug Delivery Reviews, Vol. 64, No. 1, 2012, p. 95-109.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  205. Published

    Inactivation of barley limit dextrinase inhibitor by thioredoxin-catalysed disulfide reduction. / Jensen, Johanne Mørch; Hägglund, Per; Christensen, Hans Erik Mølager; Svensson, Birte.

    In: F E B S Letters, Vol. 586, No. 16, 2012, p. 2479-2482.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  206. Published

    Industrial glucoamylase fed‐batch benefits from oxygen limitation and high osmolarity. / Pedersen, Lasse; Hansen, Kim; Nielsen, Jens; Eliasson Lantz, Anna; Thykær, Jette.

    In: Biotechnology and Bioengineering (Print), Vol. 109, No. 1, 2012, p. 116-124.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  207. Published

    Initial Pseudomonas aeruginosa infection in patients with cystic fibrosis: characteristics of eradicated and persistent isolates. / Tramper-Stranders, G. A.; van der Ent, C. K.; Molin, Søren; Yang, Liang; Hansen, Susse Kirkelund; Rau, Martin Holm; Ciofu, Oana; Johansen, H. K.; Wolfs, T. F. W.

    In: Clinical Microbiology and Infection, Vol. 18, No. 6, 2012, p. 567-574.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  208. Published

    Insights into physiological traits of Bifidobacterium animalis subsp. lactis BB-12 through membrane proteome analysis. / Gilad, Ofir; Hjernø, Karin; Østerlund, Eva Christina; Margolles, Abelardo; Svensson, Birte; Stuer-Lauridsen, Birgitte; Møller, Anders Laurell Blom; Jacobsen, Susanne.

    In: Journal of Proteomics, Vol. 75, No. 4, 2012, p. 1190-1200.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  209. Published

    In situ monitoring of IncF plasmid transfer on semi-solid agar surfaces reveals a limited invasion of plasmids in recipient colonies. / Reisner, Andreas; Wolinski, Heimo; Zechner, Ellen L.

    In: Plasmid, Vol. 67, No. 2, 2012, p. 155-161.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  210. Published

    Integrated analytical approaches towards toxic algal natural products discovery. / Larsen, Thomas Ostenfeld; Rasmussen, Silas Anselm; Gedsted Andersen, Mikael; Blossom, Hannah Eva; Christophersen, Carsten; Hansen, Per Juel; Nielsen, Kristian Fog.

    2012. Abstract from 15th International Conference in Harmful Algae, Gyeongnam, South Korea.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  211. Published

    Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing. / Gerlinger, Marco; Rowan, Andrew J.; Horswell, Stuart; Larkin, James; Endesfelder, David; Gronroos, Eva; Martinez, Pierre; Matthews, Nicholas; Stewart, Aengus; Tarpey, Patrick; Varela, Ignacio; Phillimore, Benjamin; Begum, Sharmin; McDonald, Neil Q.; Butler, Adam; Jones, David; Raine, Keiran; Latimer, Calli; Santos, Claudio R.; Nohadani, Mahrokh; Eklund, Aron Charles; Spencer-Dene, Bradley; Clark, Graham; Pickering, Lisa; Stamp, Gordon; Gore, Martin; Szallasi, Zoltan Imre; Downward, Julian; Futreal, P. Andrew; Swanton, Charles.

    In: New England Journal of Medicine, Vol. 366, No. 10, 2012, p. 883-892.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  212. Published

    Involvement of a Natural Fusion of a Cytochrome P450 and a Hydrolase in Mycophenolic Acid Biosynthesis. / Hansen, Bjarne Gram; Mnich, Ewelina; Nielsen, Kristian Fog; Nielsen, Jakob Blæsbjerg; Nielsen, Morten Thrane; Mortensen, Uffe Hasbro; Larsen, Thomas Ostenfeld; Patil, Kiran Raosaheb.

    In: Applied and Environmental Microbiology, Vol. 78, No. 14, 2012, p. 4908-4913.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  213. Published

    Isolation of IL-12p70-competent human monocyte-derived dendritic cells. / Søndergaard, Jonas Nørskov; Pedersen, Susanne Brix.

    In: Journal of Immunological Methods, Vol. 386, No. 1-2, 2012, p. 112-116.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  214. Published

    Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase. / Cuyvers, Sven; Dornez, Emmie; Abou Hachem, Maher ; Svensson, Birte; Hothorn, Michael; Chory, Joanne; Delcour, Jan A.; Courtin, Christophe M.

    In: Analytical Biochemistry, Vol. 420, No. 1, 2012, p. 90-92.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  215. Published

    Knowledge engineering for health: A new discipline required to bridge the “ICT gap” between research and healthcare. / Beck, Tim; Gollapudi, Sirisha; Brunak, Søren; Graf, Norbert; Lemke, Heinz U.; Dash, Debasis; Buchan, Iain; Díaz, Carlos; Sanz, Ferran; Brookes, Anthony J.

    In: Human Mutation, Vol. 33, No. 5, 2012, p. 797-802.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  216. Published

    Letter to the editor on ‘Fumonisin contamination and fumonisin producing black Aspergilli in dried vine fruits of different origin, IJFM. 143:143–149’. / Nielsen, Kristian Fog; Logrieco, Antonio F.

    In: International Journal of Food Microbiology, Vol. 152, No. 45, 2012.

    Publication: Research - peer-review › Letter – Annual report year: 2012

  217. Published

    LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. / Dillon, Shane C.; Espinosa, Elena; Hokamp, Karsten; Ussery, David; Casadesús, Josep; Dorman, Charles J.

    In: Molecular Microbiology, Vol. 85, No. 6, 2012, p. 1072-1089.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  218. Published

    Linking of Fusarium graminearum PKS3 to bostrycoidin production. / Frandsen, Rasmus John Normand.

    2012. Poster session presented at Cellular & Molecular Fungal Biology, Holderness, NH, United States.

    Publication: Research - peer-review › Poster – Annual report year: 2012

  219. Published

    LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs. / Will, Sebastian; Joshi, Tejal; Hofacker, Ivo L.; Stadler, Peter F.; Backofen, Rolf.

    In: R N A, Vol. 18, No. 5, 2012, p. 900-914.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  220. Published

    Long-chain PUFA in Granulocytes, Mononuclear Cells, and RBC in Patients With Cystic Fibrosis: Relation to Liver Disease. / Jorgensen, Marianne H.; Ott, Peter; Michaelsen, Kim F.; Porsgaard, Trine; Jensen, Fleming; Lanng, Susanne.

    In: Journal of Pediatric Gastroenterology and Nutrition, Vol. 55, No. 1, 2012, p. 76-81.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  221. Published

    Mælkeproteiner og allergi - Hvilke egenskaber ved nedbrudte mælkeproteiner bidrager til deres evne til at inducere allergi?. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Madsen, Charlotte Bernhard.

    In: Maelkeritidende, Vol. 125, No. 17, 2012, p. 10-11.

    Publication: Research › Journal article – Annual report year: 2012

  222. Published

    Mapping the genome of Plasmodium falciparum on the drug-like chemical space reveals novel anti-malarial targets and potential drug leads. / Jensen, Kasper; Plichta, Damian Rafal; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: Molecular BioSystems, Vol. 8, No. 6, 2012, p. 1678-1685.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  223. Published

    Mapping the polysaccharide degradation potential of Aspergillus niger. / Andersen, Mikael Rørdam; Giese, Malene; de Vries, Ronald P.; Nielsen, Jens.

    In: B M C Genomics, Vol. 13, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  224. Published

    Mechanisms of G Protein-Coupled Estrogen Receptor-Mediated Spinal Nociception. / Deliu, Elena; Brailoiu, G. Cristina; Arterburn, Jeffrey B.; Oprea, Tudor I.; Benamar, Khalid; Dun, Nae J.; Brailoiu, Eugen.

    In: Journal of Pain, Vol. 13, No. 8, 2012, p. 742-754.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  225. Published

    Media and growth conditions for induction of secondary metabolite production. / Frisvad, Jens Christian.

    In: Methods in Molecular Biology, Vol. 944, 2012, p. 47-58.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  226. Published

    Metabolic flexibility of d-ribose producer strain of Bacillus pumilus under environmental perturbations. / Srivastava, Rajesh K.; Maiti, Soumen K.; Das, Debasish; Bapat, Prashant Madhusudhan; Batta, Kritika; Bhushan, Mani; Wangikar, Pramod.

    In: Journal of Industrial Microbiology and Biotechnology, Vol. 39, No. 8, 2012, p. 1227-1243.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  227. Published

    Methods for predicting anti-cancer response. / Szallasi, Zoltan Imre (Inventor); Eklund, Aron Charles (Inventor); Birkbak, Nicolai Juul (Inventor); Richardson, Andrea L. (Inventor); Silver, Daniel P. (Inventor); Wang, Zhigang (Inventor).

    IPC No.: C12Q1/68. Mar 01, 2012.

    Publication: Research › Patent – Annual report year: 2012

  228. Published

    Microbial production of indolylglucosinolate through engineering of a multi-gene pathway in a versatile yeast expression platform. / Mikkelsen, Michael Dalgaard; Buron, Line Due; Salomonsen, Bo; Olsen, Carl Erik; Hansen, Bjarne Gram; Mortensen, Uffe Hasbro; Halkier, Barbara Ann.

    In: Metabolic Engineering, Vol. 14, No. 2, 2012, p. 104-111.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  229. Published

    MicroRNA expression profiling of carcinoma in situ cells of the testis. / Novotny, Guy Wayne; Belling, Kirstine Christensen; Bramsen, Jesper Bertram; Nielsen, John E; Bork-Jensen, Jette; Almstrup, Kristian; Sonne, Si Brask; Kjems, Jørgen; Rajpert-De Meyts, Ewa; Leffers, Henrik.

    In: Endocrine - Related Cancer, Vol. 19, No. 3, 2012, p. 365-379.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  230. Published

    Mini-chromosomes among danish Candida glabrata isolates originated through two different mechanisms. / Ahmad, K. M.; Ishchuk, O.; Hellborg, L.; Jørgensen, G.; Skvarc, M.; Stenderup, Jesper; Jørck-Ramberg, Dorte; Polakova, S.; Piskur, Jure.

    In: Mycoses, Vol. 55, 2012, p. 159-159.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  231. Published

    Mining electronic health records: towards better research applications and clinical care.. / Jensen, Peter B; Jensen, Lars Juhl; Brunak, Søren.

    In: Nature Reviews. Genetics, Vol. 13, No. 6, 2012, p. 395-405.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  232. Published

    Modeling of Phenoxy Acid Herbicide Mineralization and Growth of Microbial Degraders in 15 Soils Monitored by Quantitative Real-Time PCR of the Functional tfdA Gene. / Bælum, Jacob; Prestat, Emmanuel; David, Maude M.; Strobel, Bjarne W.; Jacobsen, Carsten Suhr.

    In: Applied and Environmental Microbiology, Vol. 78, No. 15, 2012, p. 5305-5312.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  233. Published

    Modular microfluidic system as a model of cystic fibrosis airways. / Skolimowski, Maciej; Weiss Nielsen , Martin ; Abeille, Fabien; Skafte-Pedersen, Peder; Sabourin, David; Fercher, A.; Papkovsky, D.; Molin, Søren; Taboryski, Rafael J.; Sternberg, Claus; Dufva, Martin; Geschke, Oliver; Emnéus, Jenny.

    In: Biomicrofluidics, Vol. 6, No. 3, 2012, p. 034109.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  234. Published

    Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria. / Larsen, Mette Voldby; Cosentino, Salvatore; Rasmussen, Simon; Rundsten, Carsten Friis; Hasman, Henrik; Marvig, Rasmus Lykke; Jelsbak, Lars; Sicheritz-Pontén, Thomas; Ussery, David W.; Aarestrup, Frank M.; Lund, Ole.

    In: Journal of Clinical Microbiology, Vol. 50, No. 4, 2012, p. 1355-1361.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  235. Published

    Muscle ceramide content is similar after 3 weeks’ consumption of fat or carbohydrate diet in a crossover design in patients with type 2 diabetes. / Helge, J. W.; Tobin, L.; Drachmann, Tue; Hellgren, Lars; Dela, F.; Galbo, H.

    In: European Journal of Applied Physiology, Vol. 112, No. 3, 2012, p. 911-918.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  236. Published

    Mutational properties of amino acid residues: implications for evolvability of phosphorylatable residues. / Creixell, Pau; Schoof, Erwin M.; Tan, Chris Soon Heng; Linding, Rune.

    In: Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol. 367, No. 1602, 2012, p. 2584-2593.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  237. Published

    Mutations in 23S rRNA Confer Resistance against Azithromycin in Pseudomonas aeruginosa. / Marvig, Rasmus Lykke; Søndergaard, Mette S. R.; Pedersen, Søren Damkiær; Høiby, Niels; Johansen, Helle Krogh; Molin, Søren; Jelsbak, Lars.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 8, 2012, p. 4519-4521.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  238. Published

    Mycobacterium leprae virulence-associated peptides are indicators of exposure to M. leprae in Brazil, Ethiopia and Nepal. / Bobosha, Kidist; Tang, Sheila Tuyet; van der Ploeg-van Schip, Jolien J.; Bekele, Yonas; Martins, Marcia V. S. B.; Lund, Ole; Franken, Kees L. M. C.; Khadge, Saraswoti; de Andrade Pontes, Maria Araci; Goncalves, Heitor de Sa; Hussien, Jemal; Thapa, Pratibha; Kunwar, Chhatra B.; Hagge, Deanna A.; Aseffa, Abraham; Vidal Pessolani, Maria Cristina; Pereira, Geraldo M. B.; Ottenhoff, Tom H. M.; Geluk, Annemieke.

    In: Instituto Oswaldo Cruz, Rio de Janeiro. Memorias, Vol. 107, 2012, p. 112-123.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  239. Published

    Nature of bacterial colonization influences transcription of mucin genes in mice during the first week of life. / Bergström, Anders; Kristensen, Matilde Bylov; Bahl, Martin Iain; Metzdorff, Stine B; Fink, Lisbeth Nielsen; Frøkiær, Hanne; Licht, Tine Rask.

    In: B M C Research Notes, Vol. 5, No. 1, 2012, p. 402.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  240. Published

    Navigating cancer network attractors for tumor-specific therapy.. / Creixell, Pau; Schoof, Erwin; Erler, Janine Terra; Linding, Rune.

    In: Nature Biotechnology, Vol. 30, No. 9, 2012, p. 842-848.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  241. Published

    Neonatal Cytokine Profile in the Airway Mucosal Lining Fluid Is Skewed by Maternal Atopy. / Folsgaard, Nilofar V.; Chawes, Bo L.; Rasmussen, Morten A.; Bischoff, Anne L.; Carson, Charlotte G.; Stokholm, Jakob; Pedersen, Louise; Hansel, Trevor T.; Bonnelykke, Klaus; Pedersen, Susanne Brix; Bisgaard, Hans.

    In: American Journal of Respiratory and Critical Care Medicine, Vol. 185, No. 3, 2012, p. 275-280.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  242. Published

    NetMHCcons: a consensus method for the major histocompatibility complex class I predictions. / Karosiene, Edita; Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 64, No. 3, 2012, p. 177-186.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  243. Published

    Network Medicine Strikes a Blow against Breast Cancer. / Erler, Janine Terra; Linding, Rune.

    In: Cell, Vol. 149, No. 4, 2012, p. 731-733.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  244. Published

    New penicillin-producing Penicillium species and an overview of section Chrysogena. / Houbraken, J.; Frisvad, Jens Christian; Seifert, K. A.; Overy, David Patrick; Tuthill, D. M.; Valdez, J. G.; Samson, Ramona.

    In: Persoonia, Vol. 29, 2012, p. 78-100.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  245. Published

    New producers and new 11-, 19-, and 20-residue peptaibiotics: suzukacillins B and C. / Roehrich, C. R.; Iversen, Anita; Degenkolb, T.; Jaklitsch, W. M.; Voglmayr, H.; Thrane, Ulf; Vilcinskas, A.; Nielsen, Kristian Fog; Brueckner, H.

    In: Journal of Peptide Science, Vol. 18, No. S1, 2012, p. S73-S73.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  246. Published

    Nigribactin, a Novel Siderophore from Vibrio nigripulchritudo, Modulates Staphylococcus aureus Virulence Gene Expression. / Nielsen, Anita; Månsson, Maria; Wietz, Matthias; Varming, Anders N.; Phipps, Richard Kerry; Larsen, Thomas Ostenfeld; Gram, Lone; Ingmer, Hanne.

    In: Marine Drugs, Vol. 10, No. 11, 2012, p. 2584-2595.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  247. Published

    Non-O1 Vibrio cholerae unlinked to cholera in Haiti. / Mekalanos, John J.; Robins, William; Ussery, David; Davis, Brigid M.; Schadt, Eric; Waldor, Matthew K.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 47, 2012, p. E3206.

    Publication: Research - peer-review › Letter – Annual report year: 2012

  248. Published

    Nonribosomal Peptide Synthetase Genes pesL and pes1 Are Essential for Fumigaclavine C Production in Aspergillus fumigatus. / O'Hanlon, Karen A.; Gallagher, Lorna; Schrettl, Markus; Jöchl, Christoph; Kavanagh, Kevin; Larsen, Thomas Ostenfeld; Doyle, Sean.

    In: Applied and Environmental Microbiology, Vol. 78, No. 9, 2012, p. 3166-3176.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  249. Published

    Novel Microcephalic Primordial Dwarfism Disorder Associated with Variants in the Centrosomal Protein Ninein. / Dauber, Andrew; LaFranchi, Stephen H.; Maliga, Zoltan; Lui, Julian C.; Moon, Jennifer E.; McDeed, Cailin; Henke, Katrin; Zonana, Jonathan; Kingman, Garrett A.; Pers, Tune Hannes; Baron, Jeffrey; Rosenfeld, Ron G.; Hirschhorn, Joel N.; Harris, Matthew P.; Hwa, Vivian.

    In: Journal of Clinical Endocrinology and Metabolism, Vol. 97, No. 11, 2012, p. E2140-E2151.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  250. Published

    Occurrence of different trichothecenes and deoxynivalenol-3-β-D-glucoside in naturally and artificially contaminated Danish cereal grains and whole maize plants.. / Rasmussen, P. H.; Nielsen, Kristian Fog; Ghorbani, F.; Spliid, Niels Henrik; Nielsen, G. C.; Jørgensen, L. N.

    In: Mycotoxin Research, Vol. 28, No. 3, 2012, p. 181-190.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  251. Published

    Of possible cheminformatics futures. / Oprea, Tudor I.; Taboureau, Olivier; Bologa, Cristian G.

    In: Journal of Computer - Aided Molecular Design, Vol. 26, No. 1, 2012, p. 107-112.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  252. Published

    One-millilitre microbioreactor with impeller for improved mixing. / Bolic, Andrijana; Krühne, Ulrich; Prior, Rasmus A.; Vilby, Tobias; Hugelier, Siewert; Eliasson Lantz, Anna; Gernaey, Krist.

    2012. Poster session presented at 12th International Conference on Microreaction Technology, Lyon, France.

    Publication: Research › Poster – Annual report year: 2012

  253. Published

    Overnight Control of Blood Glucose in People with Type 1 Diabetes. / Boiroux, Dimitri; Duun-Henriksen, Anne Katrine; Schmidt, Signe; Nørgaard, Kirsten; Madsbad, Sten; Skyggebjerg, Ole; Jensen, Peter Ruhdal; Poulsen, Niels Kjølstad; Madsen, Henrik; Jørgensen, John Bagterp.

    In: Proceedings of the 8th IFAC Symposium on Biological and Medical Systems. 2012.

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  254. Published

    Parallel Evolution under Chemotherapy Pressure in 29 Breast Cancer Cell Lines Results in Dissimilar Mechanisms of Resistance. / Tegze, Balint; Szallasi, Zoltan Imre; Haltrich, Iren; Penzvalto, Zsofia; Toth, Zsuzsa; Liko, Istvan; Gyoerffy, Balazs.

    In: P L o S One, Vol. 7, No. 2, 2012, p. e30804.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  255. Published

    Partial migration in fishes: definitions, methodologies and taxonomic distribution.. / Chapman, B B; Skov, C; Hulthén, K; Brodersen, Jacob; Nilsson, P A; Hansson, L-A; Brönmark, C.

    In: Journal of Fish Biology, Vol. 81, No. 2, 2012, p. 479-499.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  256. Published

    Patulin and secondary metabolite production by marine-derived Penicillium strains. / Vansteelandt, Marieke; Kerzaon, Isabelle; Blanchet, Elodie; Fossi Tankoua, Olivia; Robiou Du Pont, Thibaut; Joubert, Yolaine; Monteau, Fabrice; Le Bizec, Bruno; Frisvad, Jens C.; Pouchus, Yves François; Grovel, Olivier.

    In: Fungal Biology, Vol. 116, No. 9, 2012, p. 954-961.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  257. Published

    Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity. / Harndahl, Mikkel Nors; Rasmussen, Michael; Roder, Gustav; Dalgaard Pedersen, Ida; Sørensen, Mikael; Nielsen, Morten; Buus, Søren.

    In: European Journal of Immunology, Vol. 42, No. 6, 2012, p. 1405-1416.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  258. Published

    Peptide-MHC class I stability is a stronger predictor of CTL immunogenicity than peptide affinity. / Harndahl, Mikkel Nors; Rasmussen, Michael; Nielsen, Morten; Buus, Soren.

    In: Molecular Immunology. Vol. 51 Elsevier, 2012. p. 11.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2012

  259. Published

    Phaeobacter gallaeciensis Reduces Vibrio anguillarum in Cultures of Microalgae and Rotifers, and Prevents Vibriosis in Cod Larvae. / D'Alvise, Paul; Lillebø, Siril; Prol García, María Jesús; Wergeland, Heidrun I; Nielsen, Kristian Fog; Bergh, Oivind; Gram, Lone.

    In: P L o S One, Vol. 7, No. 8, 2012, p. e43996.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  260. Published

    Physiological characterisation of Yarrowia lipolytica yields new features of the strain. / Holt, Philippe; Thykær, Jette; Workman, Mhairi.

    In: New Biotechnology, Vol. 29S, 2012, p. S212.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  261. Published

    Physiological heterogeneities in microbial populations and implications for physical stress tolerance. / Carlquist, Magnus; Fernandes, Rita Lencastre; Helmark, Søren; Heins, Anna-Lena; Lundin, Luisa; Sorensen, Søren J.; Gernaey, Krist ; Eliasson Lantz, Anna.

    In: Microbial Cell Factories, Vol. 11, No. 94, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  262. Published

    Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children. / Lavstsen, Thomas; Turner, Louise; Saguti, Fredy; Magistrado, Pamela Almeida; Rask, Thomas Salhøj; Jespersen, Jakob S.; Wang, Christian W.; Berger, Sanne Schou; Baraka, Vito; Marquard, Andrea M.; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, Marcus Thomas Pius; Lusingu, John Peter Andrea; Theander, Thor Grundtvig.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 26, 2012, p. E1791-E1800.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  263. Published

    Polyamines Are Required for Virulence in Salmonella enterica Serovar Typhimurium. / Jelsbak, Lotte; Thomsen, Line Elnif; Wallrodt, Inke; Jensen, Peter Ruhdal; Olsen, John Elmerdahl.

    In: P L o S One, Vol. 7, No. 4, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  264. Published

    Polyclonality of Concurrent Natural Populations of Alteromonas macleodii. / Gonzaga, Aitor; Martin-Cuadrado, Ana-Belen; López-Pérez, Mario; Megumi Mizuno, Carolina; García-Heredia, Inmaculada; Kimes, Nikole E.; Lopez-García, Purificación; Moreira, David; Ussery, David; Zaballos, Mila; Ghai, Rohit; Rodriguez-Valera, Francisco.

    In: Genome Biology and Evolution, Vol. 4, No. 12, 2012, p. 201360-1374.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  265. Published

    Polysaccharides serve as scaffold of biofilms formed by mucoid Pseudomonas aeruginosa.. / Yang, Liang; Hengzhuang, Wang; Wu, Hong; Pedersen, Søren Damkiær; Jochumsen, Nicholas; Song, Zhijun; Givskov, Michael Christian; Høiby, Niels; Molin, Søren.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, 2012, p. 366-376.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  266. Published

    Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours. / Yamada, Takuji; Waller, Alison S.; Raes, Jeroen; Zelezniak, Aleksej; Perchat, Nadia; Perret, Alain; Salanoubat, Marcel; Patil, Kiran R.; Weissenbach, Jean; Bork, Peer.

    In: Molecular Systems Biology, Vol. 8, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  267. Published

    Prediction of drug efficacy for cancer treatment based on comparative analysis of chemosensitivity and gene expression data. / Wan, Peng; Li, Qiyuan; Larsen, Jens Erik Pontoppidan; Eklund, Aron Charles; Parlesak, Alexandr; Rigina, Olga; Nielsen, Søren Jensby; Björkling, Fredrik; Jonsdottir, Svava Osk.

    In: Bioorganic & Medicinal Chemistry, Vol. 20, No. 1, 2012, p. 167-176.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  268. Published

    Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?. / Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Expert Review of Vaccines, Vol. 11, No. 1, 2012, p. 43.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  269. Published

    Process for the Manufacture of Ajoene Derivatives. / Larsen, Thomas Ostenfeld (Inventor); Givskov, Michael Christian (Inventor); Bjarnsholt, Thomas (Inventor); Jakobsen, Tim Holm (Inventor); Christensen, Louise Dahl (Inventor); Shanmugham, Meenakshi Sundaram (Inventor); Phipps, Richard Kerry (Inventor); Tanner, David Ackland (Inventor); Høiby, Niels (Inventor); Jensen, Peter Østrup (Inventor).

    IPC No.: A61K31/105. Jun 14, 2012.

    Publication: Research › Patent – Annual report year: 2012

  270. Published

    Production of Monascus-like pigments. / Frisvad, Jens Christian (Inventor); Meyer, Anne S. (Inventor); Mapari, Sameer Shamsuddin (Inventor); Thrane, Ulf (Inventor).

    IPC No.: A23L1/275. Feb 23, 2012.

    Publication: Research › Patent – Annual report year: 2012

  271. Published

    Production of novel fusarielins by ectopic activation of the polyketide synthase 9 cluster in Fusarium graminearum. / Sørensen, Jens Laurids; Hansen, Frederik Teilfeldt; Sondergaard, Teis Esben; Staerk, Dan; Lee, T. Verne; Wimmer, Reinhard; Klitgaard, Louise Graabæk; Purup, Stig; Giese, Henriette; Frandsen, Rasmus John Normand.

    In: Environmental Microbiology, Vol. 14, No. 5, 2012, p. 1159-1170.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  272. Published

    Profiles of Genomic Instability in High-Grade Serous Ovarian Cancer Predict Treatment Outcome. / Wang, Zhigang C.; Birkbak, Nicolai Juul; Culhane, Aedín C.; Drapkin, Ronny; Fatima, Aquila; Tian, Ruiyang; Schwede, Matthew; Alsop, Kathryn; Daniels, Kathryn E.; Piao, Huiying; Liu, Joyce; Etemadmoghadam, Dariush; Miron, Alexander; Salvesen, Helga B.; Mitchell, Gillian; DeFazio, Anna; Quackenbush, John; Berkowitz, Ross S.; Iglehart, J. Dirk; Bowtell, David D.L.; Matulonis, Ursula A.

    In: Clinical Cancer Research, Vol. 18, No. 20, 2012, p. 5806-5815.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  273. Published

    Proteome Analysis of Pyloric Ceca: A Methodology for Fish Feed Development?. / Wulff, Tune; Petersen, Jørgen; Nørrelykke, Mette R.; Jessen, Flemming; Nielsen, Henrik H.

    In: Journal of Agricultural and Food Chemistry, Vol. 60, No. 34, 2012, p. 8457-8464.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  274. Published

    Proteomic Analysis of Chinese Hamster Ovary Cells. / Baycin-Hizal, Deniz; Tabb, David L.; Chaerkady, Raghothama; Chen, Lily; Lewis, Nathan E.; Nagarajan, Harish; Sarkaria, Vishaldeep; Kumar, Amit; Wolozny, Daniel; Colao, Joe; Jacobson, Elena; Tian, Yuan; O’Meally, Robert N.; Krag, Sharon S.; Cole, Robert N.; Palsson, Bernhard; Zhang, Hui; Betenbaugh, Michael.

    In: Journal of Proteome Research, Vol. 11, No. 11, 2012, p. 5265-5276.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  275. Published

    Proteomic and genetic analysis of wheat endosperm albumins and globulins using deletion lines of cultivar Chinese Spring. / Merlino, Marielle; Bousbata, Sabrina ; Svensson, Birte; Branlard, Gérard.

    In: Theoretical and Applied Genetics, Vol. 125, No. 7, 2012, p. 1433-1448.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  276. Published

    Proteomics as a tool to understand fish stress in aquaculture. / Silva, Tomé Santos; Rodrigues, Pedro M.; Matos, Elisabete; Wulff, Tune; Cordeiro, Odete D.; Alves, Ricardo N.; Richard, Nadege; Vareilles, Mahaut de; Jessen, Flemming; Dias, Jorge P.; Conceicao, Luis E. C.

    In: Farm animal proteomics: Prodeedings of the 3rd Managing Committee meeting and 2nd Meeting of Working Groups 1, 2 & 3 of COST Action FA 1002. ed. / Pedro Rodrigues; David Eckersall; André de Almeida. The Netherlands : Wageningen Academic Publishers, 2012. p. 198-200.

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  277. Published

    QSAR model for human pregnane X receptor (PXR) binding: Screening of environmental chemicals and correlations with genotoxicity, endocrine disruption and teratogenicity. / Dybdahl, Marianne; Nikolov, Nikolai G.; Wedebye, Eva Bay; Jónsdóttir, Svava Ósk; Niemelä, Jay R.

    In: Toxicology and Applied Pharmacology, Vol. 262, No. 3, 2012, p. 301-309.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  278. Published

    Quick guide to polyketide synthase and nonribosomal synthetase genes in Fusarium. / Hansen, Jørgen T.; Sørensen, Jens L.; Giese, Henriette; Sondergaard, Teis E.; Frandsen, Rasmus J.N.

    In: International Journal of Food Microbiology, Vol. 155, No. 3, 2012, p. 128-136.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  279. Published

    Raffinose family oligosaccharide utilisation by probiotic bacteria: insight into substrate recognition, molecular architecture and diversity of GH36 alpha-galactosidases. / Abou Hachem, Maher ; Fredslund, Folmer; Andersen, Joakim Mark; Larsen, Rene Jonsgaard; Majumder, Avishek; Hansen, Morten Ejby; van Zanten, Gabriella Christina; Lahtinen, S. J.; Barrangou, R.; Klaenhammer, T.; Jacobsen, S.; Coutinho, P. M.; Lo Leggio, Leila; Svensson, Birte.

    In: Biocatalysis and Biotransformation, Vol. 30, No. 3, 2012, p. 316-325.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  280. Published

    Rebuttal to the response letter to our letter to the editor on ‘Fumonisin contamination and fumonisin producing black Aspergilli in dried vine fruits of different origin published in International Journal of Food Microbiology, 143:143–149’. / Nielsen, Kristian Fog; Logrieco, Antonio F.

    In: International Journal of Food Microbiology, Vol. 152, 2012, p. 49-50.

    Publication: Research - peer-review › Letter – Annual report year: 2012

  281. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Proteomics, Vol. 12, No. 1, 2012, p. 11-20.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  282. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Journal of Proteome Research, Vol. 11, No. 2, 2012, p. 1412-1419.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  283. Published

    Redirection of pigment biosynthesis to isocoumarins in Fusarium. / Sørensen, Jens Laurids; Nielsen, Kristian Fog; Sondergaard, Teis Esben.

    In: Fungal Genetics and Biology, Vol. 49, No. 8, 2012, p. 613-618.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  284. Published

    Regulatory processes in Aspergillus niger. / Poulsen, Lars; Thykær, Jette (Supervisor); Eliasson Lantz, Anna (Supervisor).

    Department of Systems Biology, DTU, 2012. 271 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2012

  285. Published

    Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands. / Bohlin, Jon; van Passel, Mark W. J.; Snipen, Lars; Kristoffersen, Anja B.; Ussery, David; Hardy, Simon P.

    In: B M C Genomics, Vol. 13, No. 66, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  286. Published

    Reliable B cell epitope predictions: impacts of method development and improved benchmarking.. / Kringelum, Jens Vindahl; Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: P L o S Computational Biology, Vol. 8, No. 12, 2012, p. e1002829.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  287. Published

    Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany. / Grad, Yonatan H.; Lipsitch, Marc; Griggs, Allison D.; Haas, Brian J.; Shea, Terrance P.; McCowan, Caryn; Montmayeur, Anna; FitzGerald, Michael; Wortman, Jennifer R.; Krogfelt, Karen Angeliki; Bingen, Edouard; Weill, François-Xavier; Tietze, Erhard; Flieger, Antje; Lander, Eric S.; Nusbaum, Chad; Birren, Bruce W.; Hung, Deborah T.; Hanage, William P.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 52, 2012, p. 20E3629-E3630.

    Publication: Research - peer-review › Letter – Annual report year: 2012

  288. Published

    Resistance to Linezolid Caused by Modifications at Its Binding Site on the Ribosome. / Long, Katherine S.; Vester, Birte.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 2, 2012, p. 603-612.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  289. Published

    Robust, small-scale cultivation platform for Streptomyces coelicolor. / Sohoni, Sujata Vijay; Bapat, Prashant Madhusudan; Lantz, Anna Eliasson.

    In: Microbial Cell Factories, Vol. 11, No. 1, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  290. Published

    Saccharomyces cerevisiae : a model to uncover molecular mechanisms for yeast biofilm biology.. / Bojsen, Rasmus K; Andersen, Kaj Scherz; Regenberg, Birgitte.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, 2012, p. 169-182.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  291. Published

    SarA is a negative regulator of Staphylococcus epidermidis biofilm formation. / Martin, Christer; Heinze, C.; Busch, M.; Franke, G.; Hentschke, M.; Dühring, Sara Bayard; Buettner, H.; Kotasinska, M.; Wischnewski, V.; Buck, F.; Molin, Søren; Otto, Michael; Rohde, Henning.

    In: International Journal of Medical Microbiology, Vol. 302, 2012.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  292. Published

    sarA negatively regulates Staphylococcus epidermidis biofilm formation by modulating expression of 1 MDa extracellular matrix binding protein and autolysis‐dependent release of eDNA. / Christner, Martin; Heinze, Constanze; Busch, Michael; Franke, Gefion; Hentschke, Moritz; Dühring, Sara Bayard; Büttner, Henning; Kotasinska, Marta; Wischnewski, Victoria; Kroll, Gesche; Buck, Friedrich; Molin, Søren; Otto, Michael; Rohde, Holger.

    In: Molecular Microbiology, Vol. 86, No. 2, 2012, p. 394-410.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  293. Published

    Scale-free behaviour of amino acid pair interactions in folded proteins. / Petersen, Steffen B. ; Neves-Petersen, Maria Teresa; Mortensen, Rasmus J. ; Henriksen, Svend B. ; Geertz-Hansen, Henrik Marcus.

    In: P L o S One, Vol. 7, No. 7, 2012, p. e41322-e41322.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  294. Published

    SCCmec Type IX Element in Methicillin Resistant Staphylococcusaureusspa Type t337 (CC9) Isolated from Pigs and Pork in Thailand. / Vestergaard, Martin; Cavaco, Lina M; Sirichote, Pantip; Unahalekhaka, Aekkawat; Dangsakul, Worawat; Svendsen, Christina Aaby; Aarestrup, Frank M; Hendriksen, Rene S.

    In: Frontiers in Microbiology, Vol. 3, 2012, p. Article 103.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  295. Published

    Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae. / Papini, Marta; Nookaew, Intawat; Uhlén, Mathias; Nielsen, Jens.

    In: Microbial Cell Factories, Vol. 11, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  296. Published

    Screening of Aspergillus nidulans metabolites from habitat mimicking media using LC-DAD-TOFMS system. / Klitgaard, Andreas; Holm, Dorte Koefoed; Frisvad, Jens Christian; Nielsen, Kristian Fog.

    In: Planta Medica, Vol. 78, No. P167, 2012.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  297. Published

    Screening the natural habitat: New peptaibiotics from specimens and pure cultures of the fungicolous fungus Hypocrea pulvinata. / Roehrich, C. R.; Iversen, Anita; Degenkolb, T.; Jaklitsch, W. M.; Voglmayr, H.; Berg, Anette; Thrane, U.; Vilcinskas, A.; Nielsen, Kristian Fog; Bruecknerf, H.

    In: Journal of Peptide Science, Vol. 18, No. S1, 2012, p. S74-S74.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  298. Published

    Searching for eukaryotic life preserved in Antarctic permafrost. / Zucconi, L.; Selbmann, L.; Buzzini, P.; Turchetti, B.; Guglielmin, M.; Frisvad, J. C.; Onofri, S.

    In: Polar Biology, Vol. 35, No. 5, 2012, p. 749-757.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  299. Published

    Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat. / Yang, Fen; Jensen, Jens D.; Svensson, Birte; Jørgensen, Hans J. L.; Collinge, David B.; FINNIE, CHRISTINE.

    In: Molecular Plant Pathology, Vol. 13, No. 5, 2012, p. 445-453.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  300. Published

    Sensitising capacity of peptides from food allergens. / Bøgh, Katrine Lindholm; Madsen, Charlotte Bernhard (Supervisor); Barkholt, Vibeke (Supervisor).

    Søborg : DTU Food, 2012. 139 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2012

  301. Published

    Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion. / Thomsen, Martin Christen Frølund; Nielsen, Morten.

    In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W281-W287.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  302. Published

    Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries. / Talkowski, Michael E.; Rosenfeld, Jill A.; Blumenthal, Ian; Pillalamarri, Vamsee; Chiang, Colby; Heilbut, Adrian; Ernst, Carl; Hanscom, Carrie; Rossin, Elizabeth; Lindgren, Amelia M.; Pereira, Shahrin; Ruderfer, Douglas; Kirby, Andrew; Ripke, Stephan; Harris, David J.; Lee, Ji-Hyun; Ha, Kyungsoo; Kim, Hyung-Goo; Solomon, Benjamin D.; Gropman, Andrea L.; Lucente, Diane; Sims, Katherine; Ohsumi, Toshiro K.; Borowsky, Mark L.; Loranger, Stephanie; Quade, Bradley; Hansen, Kasper Lage; Miles, Judith; Wu, Bai-Lin; Shen, Yiping; Neale, Benjamin; Shaffer, Lisa G.; Daly, Mark J.; Morton, Cynthia C.; Gusella, James F.

    In: Cell, Vol. 149, No. 3, 2012, p. 525-537.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  303. Published

    Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.. / Prins, Pjotr; Goto, Naohisa; Yates, Andrew; Gautier, Laurent; Willis, Scooter; Fields, Christopher; Katayama, Toshiaki.

    In: Methods in Molecular Biology, Vol. 856, 2012, p. 513-527.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  304. Published

    Significance and occurrence of fumonisins from Aspergillus niger. / Mogensen, Jesper Mølgaard; Nielsen, Kristian Fog (Main supervisor); Larsen, Thomas Ostenfeld (Supervisor); Frisvad, Jens Christian (Supervisor).

    Department of Systems Biology, DTU, 2012. 170 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  305. Published

    snpTree - a web-server to identify and construct SNP trees from whole genome sequence data.. / Leekitcharoenphon, Pimlapas; Kaas, Rolf Sommer; Thomsen, Martin Christen Frølund; Rundsten, Carsten Friis; Rasmussen, Simon; Aarestrup, Frank Møller.

    In: B M C Genomics, Vol. 13, No. Suppl 7, 2012, p. S6.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  306. Published

    Standardized and simple sub-fractionation of human plasma reveals enrichment of many low abundant hydrophobic proteins. / Jessen, Flemming; Wulff, Tune.

    2012. Poster session presented at 9th Siena Meeting From Genome to Proteome, Siena, Italy.

    Publication: Research - peer-review › Poster – Annual report year: 2012

  307. Published

    Staphylococcus epidermidis recovered from indwelling catheters exhibit enhanced biofilm dispersal and "self-renewal" through downregulation of agr. / Dai, Lu; Yang, Liang; Parsons, Chris; Findlay, Victoria J.; Molin, Søren; Qin, Zhiqiang.

    In: B M C Microbiology, Vol. 12, 2012, p. Article No.: 102.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  308. Published

    Structural and physical effects of aroma compound binding to native starch granules. / Jørgensen, Anders Dysted; Jensen, Susanne L.; Ziegler, Gregory; Pandeya, Anuranjan; Buléon, Alain; Svensson, Birte; Blennow, Andreas.

    In: Starch, Vol. 64, No. 6, 2012, p. 461-469.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  309. Published

    Structure of the starch-debranching enzyme barley limit dextrinase reveals homology of the N-terminal domain to CBM21. / Møller, Marie Sofie; Abou Hachem, Maher ; Svensson, Birte; Henriksen, Anette.

    In: Acta Crystallographica. Section F: Structural Biology and Crystallization Communications Online, Vol. 68, No. Pt 9, 2012, p. 1008-1012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  310. E-pub ahead of print

    System chemical biology studies of endocrine disruptors. / Taboureau, Olivier; Oprea, Tudor I.

    2012. Abstract from 242nd National Meeting of the American-Chemical-Society (ACS), Denver, CO, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  311. Published

    Targeted Gene Replacement in Fungal Pathogens via Agrobacterium tumefaciens- Mediated Transformation. / Frandsen, Rasmus John Normand; Frandsen, Mette; Giese, Nanna Henriette.

    In: Plant Fungal Pathogens: Methods and Protocols. Vol. 835 Humana Press, 2012. p. 17-45 (Methods in molecular biology).

    Publication: Research - peer-review › Book chapter – Annual report year: 2012

  312. Published

    Targeting of conserved Gag-epitopes in early HIV infection is associated with lower plasma viral load and slower CD4+ T cell depletion. / Pérez, Carina L, Dr.; Milush, Jeffrey M, Dr.; Buggert, Marcus, Dr.; Eriksson, Emily, Dr.; Larsen, Mette Voldby; Liegler, Teri; Hartogensis, Wendy, Dr.; Bacchetti, Peter, Dr.; Lund, Ole; Hecht, Frederick, Dr.; Nixon, Douglas, Dr.; Karlsson, Annika C, Dr.

    In: AIDS Research and Human Retroviruses, No. ja, 2012, p. 1-38.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  313. Published

    Telomeric Allelic Imbalance Indicates Defective DNA Repair and Sensitivity to DNA-Damaging Agents. / Birkbak, Nicolai J.; Wang, Zhigang C.; Kim, Ji-Young; Eklund, Aron C.; Li, Qiyuan; Tian, Ruiyang; Bowman-Colin, Christian; Li, Yang; Greene-Colozzi, April; Iglehart, J. Dirk; Tung, Nadine; Ryan, Paula D.; Garber, Judy E.; Silver, Daniel P.; Szallasi, Zoltan; Richardson, Andrea L.

    In: Cancer Drug Discovery and Development, Vol. 2, No. 4, 2012, p. 366-375.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  314. Published

    The Cancer Exome Generated by Alternative mRNA Splicing Dilutes Predicted HLA Class I Epitope Density. / Stranzl, Thomas; Larsen, Mette Voldby; Lund, Ole; Nielsen, Morten; Brunak, Søren.

    In: P L o S One, Vol. 7, No. 9, 2012, p. e38670.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  315. Published

    The Duffy-Binding-Like β domain (DBLβ) of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) variant, PFD1235w, binds ICAM1. / Andersen, M. A.; Bengtsson, A.; Rask, Thomas Salhøj; Jørgensen, L.; Jensen, A. T. R.

    In: Joint Spring Symposium 2012 - Double burden of disease – how parasites interact with each other, their host and the society: Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. Danish Society for Parasitology, 2012. p. 10.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2012

  316. Published

    The effect of cocoa fermentation and weak organic acids on growth and ochratoxin A production by Aspergillus species. / Copetti, Marina V.; Iamanaka, Beatriz T.; Mororó, Raimundo C.; Pereira, José L.; Frisvad, Jens C.; Taniwaki, Marta H.

    In: International Journal of Food Microbiology, Vol. 155, No. 3, 2012, p. 158-164.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  317. Published

    The effect of selected synbiotics on microbial composition and short-chain Fatty Acid production in a model system of the human colon.. / van Zanten, Gabriella C; Knudsen, Anne; Röytiö, Henna; Forssten, Sofia; Lawther, Mark; Blennow, Per Gunnar Andreas; Lahtinen, Sampo J; Jakobsen, Mogens; Svensson, Birte; Jespersen, Lene.

    In: P L o S One, Vol. 7, No. 10, 2012, p. e47212.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  318. Published

    The impact of network biology in pharmacology and toxicology. / Panagiotou, Gianni; Taboureau, Olivier .

    In: S A R and Q S A R in Environmental Research, Vol. 23, No. 3-4, Sp. Iss. SI, 2012, p. 221-235.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  319. Published

    The metabolically active subpopulation in Pseudomonas aeruginosa biofilms survives exposure to membrane-targeting antimicrobials via distinct molecular mechanisms. / Chiang, Wen-Chi; Pamp, Sünje Johanna; Nilsson, Martin; Givskov, Michael Christian; Tolker-Nielsen, Tim.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, Sp. Iss. SI, 2012, p. 245-256.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  320. Published

    The PurR regulon in Lactococcus lactis – transcriptional regulation of the purine nucleotide metabolism and translational machinery. / Jendresen, Christian Bille; Martinussen, Jan; Kilstrup, Mogens.

    In: Microbiology, Vol. 158, No. 8, 2012, p. 2026-38.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  321. Published

    The role of subsite +2 of the Trichoderma reesei beta-mannanase TrMan5A in hydrolysis and transglycosylation. / Rosengren, Anna; Hägglund, Per; Anderson, Lars Steen; Pavon-Orozco, Patricia; Peterson-Wulff, Ragna; Nerinckx, Wim; Stalbrand, Henrik.

    In: Biocatalysis and Biotransformation, Vol. 30, No. 3, 2012, p. 338-352.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  322. Published

    The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens. / Forsberg, Kevin J.; Reyes, Alejandro; Wang, Bin; Selleck, Elizabeth M.; Sommer, Morten O. A.; Dantas, Gautam.

    In: Science, Vol. 337, No. 6098, 2012, p. 1107-1111.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  323. Published

    The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. / Kröger, Carsten; Dillon, Shane C.; Cameron, Andrew D. S.; Papenfort, Kai; Sivasankaran, Sathesh K.; Hokamp, Karsten; Chao, Yanjie; Sittka, Alexandra; Hébrard, Magali; Händler, Kristian; Colgan, Aoife; Leekitcharoenphon, Pimlapas; Langridge, Gemma C.; Lohan, Amanda J.; Loftus, Brendan; Lucchini, Sacha; Ussery, David; Dorman, Charles J.; Thomson, Nicholas R.; Vogel, Jörg; Hinton, Jay C. D.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 20, 2012, p. E1277-E1286.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  324. Published

    TLR2 Controls Intestinal Carcinogen Detoxication by CYP1A1.. / Do, Khoa; Fink, Lisbeth Nielsen; Jensen, Thomas Elbenhardt; Gautier, Laurent; Parlesak, Alexandr.

    In: P L o S One, Vol. 7, No. 3, 2012, p. e32309.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  325. Published

    Topology Optimized Bioreactors — A Design Example with Immobilized Yeast. / Lencastre Fernandes, Rita (Author); Schäpper, Daniel (Author); Eliasson Lantz, Anna (Author); Okkels, Fridolin (Author); Bruus, Henrik (Author); Gernaey, Krist (Author).

    2012. Bioprocessing Summit 2012, Boston, MA, United States, 20-08-12.

    Publication: Research › Sound/Visual production (digital) – Annual report year: 2012

  326. Published

    Towards improved bioprocess operation: monitoring, modeling and control. / Gernaey, Krist; Eliasson Lantz, Anna; Albæk, Mads Orla; Krühne, Ulrich.

    2012. Abstract from Nordic Bioprocess Improvement Seminar 2, Kgs.Lyngby, Denmark.

    Publication: Research › Conference abstract for conference – Annual report year: 2012

  327. Published

    Toxicogenomics Investigation Under the eTOX Project. / Taboureau, Olivier ; Hersey, Anne; Audouze, Karine Marie Laure; Gautier, Laurent; Jacobsen, Ulrik Plesner; Akhtar, Ruth; Atkinson, Francis; Overington, John P.; Brunak, Søren.

    In: Journal of Pharmacogenomics & Pharmacoproteomics, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  328. Published

    Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM.. / Andersen, Joakim Mark; Barrangou, Rodolphe; Abou Hachem, Maher ; Lahtinen, Sampo J; Goh, Yong-Jun; Svensson, Birte; Klaenhammer, Todd R.

    In: P L o S One, Vol. 7, No. 9, 2012, p. e44409.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  329. Published

    Transcriptome Dynamics of Pseudomonas putida KT2440 under Water Stress. / Gülez, Gamze; Dechesne, Arnaud; Workman, Christopher; Smets, Barth F.

    In: Applied and Environmental Microbiology, Vol. 78, No. 3, 2012, p. 676-683.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  330. Published

    Tunable promoters in synthetic and systems biology.. / Dehli, Tore; Solem, Christian; Jensen, Peter Ruhdal.

    In: Sub-cellular biochemistry., Vol. 64, 2012, p. 181-201.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  331. Published

    Tuning of Controller for Type 1 Diabetes Treatment with Stochastic Differential Equations. / Duun-Henriksen, Anne Katrine; Boiroux, Dimitri; Schmidt, Signe; Skyggebjerg, Ole; Madsbad, Sten; Jensen, Peter Ruhdal; Jørgensen, John Bagterp; Poulsen, Niels Kjølstad; Nørgaard, Kirsten; Madsen, Henrik.

    In: Proceedings of the 8th IFAC Symposium on Biological and Medical Systems. 2012.

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  332. Published

    Two‐dimensional gel‐based alkaline proteome of the probiotic bacterium Lactobacillus acidophilus NCFM. / Majumder, Avishek; Cai, Liyang; Ejby, Morten; Schmidt, Bjarne G.; Lahtinen, Sampo J.; Jacobsen, Susanne; Svensson, Birte.

    In: Proteomics, Vol. 12, No. 7, 2012, p. 1006-1014.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  333. Published

    Two novel methods for using genome sequences to infer taxonomy. / Ussery, David; Gordon, Stephen V.

    In: Microbiology, Vol. 158, No. Pt 6, 2012, p. 1414.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  334. Published

    Two thymidine kinases and one multisubstrate deoxyribonucleoside kinase salvage DNA precursors in Arabidopsis thaliana. / Clausen, Anders R.; Girandon, Lenart; Ali, Ashfaq; Knecht, Wolfgang; Rozpedowska, Elzbieta; Sandrini, Michael; Andreasson, Erik; Munch‐Petersen, Birgitte; Piskur, Jure.

    In: F E B S Journal, Vol. 279, No. 20, 2012, p. 3889-3897.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  335. Published

    Uncovering the Molecular Machinery of the Human Spindle-An Integration of Wet and Dry Systems Biology. / Rojas, Ana M.; Santamaria, Anna; Malik, Rainer; Jensen, Thomas Skot; Korner, Roman; Morilla, Ian; de Juan, David; Krallinger, Martin; Hansen, Daniel Aaen; Hoffmann, Robert Daniel; Lees, Jonathan; Reid, Adam; Yeats, Corin; Wehner, Anja; Elowe, Sabine; Clegg, Andrew B.; Brunak, Soren; Nigg, Erich A.; Orengo, Christine; Valencia, Alfonso; Ranea, Juan A. G.

    In: P L o S One, Vol. 7, No. 3, 2012, p. e31813.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  336. Published

    Upregulation of TGF-beta 1 in neonates of mothers receiving Influenza A (H1N1) vaccination during pregnancy. / Bischoff, Anne Louise; Folsgaard, N.; Bisgaard, H.; Rasmussen, M.; Pedersen, Susanne Brix.

    In: Allergy, Vol. 67, No. s96, 2012, p. 475.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  337. Published

    Use of high-gradient magnetic fishing for reducing proteolysis during fermentation.. / Maury, Trine Lütken; Ottow, Kim Ekelund; Brask, Jesper; Villadsen, John; Hobley, Timothy John.

    In: Biotechnology Journal, Vol. 7, No. 7, 2012, p. 909-918.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  338. Published

    Vegetable based fish feed changes protein expression in muscle of rainbow trout (Oncorhynchus mykiss). / Jessen, Flemming; Wulff, Tune; Bach Mikkelsen, Jeanett; Hyldig, Grethe; Nielsen, Henrik Hauch.

    In: Farm animal proteomics: Prodeedings of the 3rd Managing Committee meeting and 2nd Meeting of Working Groups 1, 2 & 3 of COST Action FA 1002. ed. / Pedro Rodrigues; David Eckersall; André de Almeida. The Netherlands : Wageningen Academic Publishers, 2012. p. 134-137.

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  339. Published

    Wide Distribution of Closely Related, Antibiotic-Producing Arthrobacter Strains throughout the Arctic Ocean. / Wietz, Matthias; Månsson, Maria; Bowman, Jeff S.; Blom, Nikolaj; Ng, Yin; Gram, Lone.

    In: Applied and Environmental Microbiology, Vol. 78, No. 6, 2012, p. 2039-2042.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  340. 2011
  341. Published

    Thioredoxin reductase from barley: Structure, recognition of thioredoxin, protein engineering and catalytic mechanism. / Kirkensgaard, Kristine Groth; Svensson, Birte (Supervisor); Hägglund, Per (Supervisor); Henriksen, Anette (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  342. Published

    Functional Analysis and Heterologous expression of Polyketides Gene Cluster. / Kildegaard, Kanchana Rueksomtawin; Larsen, Thomas Ostenfeld (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  343. Published

    Integrative Systems Biology: Elucidating Complex Traits. / Pers, Tune Hannes; Brunak, Søren (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011. 161 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  344. Published

    New Principles for Targeting Cancer - a Rational Small Molecule Approach. / Rønnest, Mads Holger; Larsen, Thomas Ostenfeld (Supervisor); Clausen, Mads Hartvig (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  345. Published

    Prediction of protein structural features by use of artificial neural networks. / Petersen, Bent; Lundegaard, Claus (Supervisor); Petersen, Thomas Nordahl (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011. 122 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  346. Published

    Application of proteomics to investigate barley-Fusarium graminearum interaction. / Yang, Fen; Finnie, Christine (Supervisor); Jacobsen, Susanne (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  347. Published

    Relationship of Extreme Chromosomal Instability with Long-term Survival in a Retrospective Analysis of Primary Breast Cancer. / Roylance, Rebecca; Endesfelder, David; Gorman, Patricia; Sander, Jil; Tomlinson, Ian; M. Hanby, Andrew; Speirs, Valerie; L. Richardson, Andrea; Birkbak, Nicolai Juul; Eklund, Aron Charles; Downward, Julian; Kschischo, Maik; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Cancer Epidemiology, Biomarkers & Prevention, 22.07.2011, p. 2184-2197.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  348. Published

    Metabollic Engineering of Saccharomyces Cereviae a,omi acid metabolism for production of products of industrial interest. / Chen, Xiao; Kielland-Brandt, Morten (Supervisor); Karhumaa, Kaisa (Supervisor); Nielsen, Jens (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  349. Published

    Using Compound-Protein Interactions and Systems Biology to Study Environmental Effects on diseases development. / Weinhold, Nils; Brunak, Søren (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  350. Published

    Protein Interactions and Phenotype Association for Disease Finding. / Roque, francisco jose sousa simôes almeida; Brunak, Søren (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  351. Published

    Discovery of Bioactive Natural Products from Marine Bacteria. / Månsson, Maria; Larsen, Thomas Ostenfeld (Supervisor); Nielsen, Kristian Fog (Supervisor); Gotfredsen, Charlotte Held (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  352. Published

    Characterization of the molecular and genetic regulation of the nucleotide metabolism in Lactococcus lactis. / Jendresen, Christian Bille; Kilstrup, Mogens (Supervisor); Martinussen, Jan (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  353. Published

    A biochemically structured model for ethanol fermentation by Kluyveromyces marxianus: A batch fermentation and kinetic study. / Sansonetti, Sascha; Hobley, Timothy John; Calabrò, V.; Villadsen, John; Sin, Gürkan.

    In: Bioresource Technology, Vol. 102, No. 16, 2011, p. 7513-7520.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  354. Published

    A breast cancer meta-analysis of two expression measures of chromosomal instability reveals a relationship with younger age at diagnosis and high risk histopathological variables.. / Endesfelder, David; McGranahan, Nicholas; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Kschischo, Maik; A. Graham, Trevor; Swanton, Charles.

    In: OncoTarget, 2011.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  355. Published

    Acetic acid and a buffer. / Givskov, Michael Christian (Inventor); Bjarnsholt, Thomas (Inventor); Homøe, Preben (Inventor); Høiby, Niels (Inventor); Jensen, Peter Østrup (Inventor); Johansen, Helle Krogh (Inventor); Kirketerp-Møller, Klaus (Inventor).

    Patent No.: EP 2306972. Apr 13, 2011.

    Publication: Research › Patent – Annual report year: 2011

  356. Published

    Acetic acid and a buffer. / Givskov, Michael Christian (Inventor); Bjarnsholt, Thomas (Inventor); Homøe, Preben (Inventor); Høiby, Niels (Inventor); Jensen, Peter Østrup (Inventor); Johansen, Helle Krogh (Inventor); Kirketerp-Møller, Klaus (Inventor).

    Patent No.: US 20110245148. Oct 06, 2011.

    Publication: Research › Patent – Annual report year: 2011

  357. Published

    A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut. / Karlsson, Fredrik H.; Ussery, David; Nielsen, Jens; Nookaew, Intawat.

    In: Microbial Ecology, Vol. 61, No. 3, 2011, p. 473-485.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  358. Published

    A combined genetic and multi medium approach revels new secondary metabolites in Aspergillus nidulans. / Klejnstrup, Marie Louise; Nielsen, Morten Thrane; Frisvad, Jens Christian; Mortensen, Uffe Hasbro; Larsen, Thomas Ostenfeld.

    2011. Abstract from 26th Fungal Genetics Conference, Asilomar, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  359. Published

    Adhesive properties of Staphylococcus epidermidis probed by atomic force microscopy. / Hu, Yifan; Ulstrup, Jens; Zhang, Jingdong; Molin, Søren; Dupres, Vincent.

    In: Physical Chemistry Chemical Physics, Vol. 13, No. 21, 2011, p. 9995-10003.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  360. Published

    A distinct adipose tissue gene expression response to caloric restriction predicts 6-mo weight maintenance in obese subjects.. / Mutch, D. M.; Pers, Tune Hannes; Temanni, M. R.; Pelloux, V.; Marquez-Quinones, A.; Holst, C.; Martinez, Jose Ignacio; Babalis, D.; Baak, M. A. van; Handjieva-Darlenska, T.; Walker, C. G.; Astrup, A.; Saris, W. H. M.; Langin, D.; Viguerie, N.; Zucker, J. D.; Clement, K.

    In: American Journal of Clinical Nutrition, Vol. 94, No. 6, 2011, p. 1399-1409.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  361. Published

    Advanced Microscopy of Microbial Cells. / Haagensen, Janus Anders Juul; Regenberg, Birgitte; Sternberg, Claus.

    In: Advances in Biochemical Engineering/Biotechnology. Vol. 124 Springer, 2011. p. 21-54 (Advances in Biochemical Engineering/Biotechnology).

    Publication: Research - peer-review › Book chapter – Annual report year: 2011

  362. Published

    Advances in the effective application of membrane technology in the food industry. / Pinelo, Manuel; Jonsson, Gunnar Eigil; Meyer, Anne S.

    In: Separation, extraction and concentration processes in the food, beverage and nutraceutical industries. ed. / S.S.H. Rizvi. Vol. 6 Woodhead Publishing, 2011. p. 180-201.

    Publication: Research - peer-review › Book chapter – Annual report year: 2011

  363. Published

    A genome-wide polyketide synthase deletion library uncovers novel genetic links to polyketides and meroterpenoids in Aspergillus nidulans. / Nielsen, Michael Lynge; Nielsen, Jakob Blæsbjerg; Rank, Christian; Klejnstrup, Marie Louise; Holm, Dorte Koefoed; Brogaard, Katrine Husted; Hansen, Bjarne Gram; Frisvad, Jens Christian; Larsen, Thomas Ostenfeld; Mortensen, Uffe Hasbro.

    In: F E M S Microbiology Letters, Vol. 321, No. 2, 2011, p. 157-166.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  364. Published

    A guide to binary vectors and strategies for targeted genome modification in fungi using Agrobacterium tumefaciens-mediated transformation. / Frandsen, Rasmus John Normand.

    In: Journal of Microbiological Methods, Vol. 87, No. 3, 2011, p. 247-262.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  365. Published

    Alcohol-based quorum sensing plays a role in adhesion and sliding motility of the yeast Debaryomyces hansenii. / Gori, Klaus; Knudsen, Peter Boldsen; Nielsen, Kristian Fog; Arneborg, Nils; Jespersen, Lene.

    In: F E M S Yeast Research, Vol. 11, No. 8, 2011, p. 643-652.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  366. Published

    A magnetic adsorbent-based process for semi-continuous PEGylation of proteins. / Ottow, Kim Ekelund; Maury, Trine Lütken; Hobley, Timothy John; Lund-Olesen, Torsten; Hansen, Mikkel Fougt.

    In: Biotechnology Journal, Vol. 6, No. 4, 2011, p. 396-409.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  367. Published

    A Mig-14-like protein (PA5003) affects antimicrobial peptide recognition in Pseudomonas aeruginosa. / Jochumsen, Nicholas; Liu, Yang; Molin, Søren; Folkesson, Anders.

    In: Microbiology, Vol. 157, No. Pt 9, 2011, p. 2647-2657.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  368. Published

    An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia. / Rasmussen, Morten; Guo, Xiaosen; Wang, Yong; Lohmueller, Kirk E.; Rasmussen, Simon; Albrechtsen, Anders; Skotte, Line; Lindgreen, Stinus; Metspalu, Mait; Jombart, Thibaut; Kivisild, Toomas; Zhai, Weiwei; Eriksson, Anders; Manica, Andrea; Orlando, Ludovic; De La Vega, Francisco M.; Tridico, Silvana; Metspalu, Ene; Nielsen, Kasper; Ávila-Arcos, María C.; Moreno-Mayar, J. Víctor; Muller, Craig; Dortch, Joe; Gilbert, M. Thomas P.; Lund, Ole; Wesolowska, Agata; Karmin, Monika; Weinert, Lucy A.; Wang, Bo; Li, Jun; Tai, Shuaishuai; Xiao, Fei; Hanihara, Tsunehiko; van Driem, George; Jha, Aashish R.; Ricaut, François-Xavier; de Knijff, Peter; Migliano, Andrea B; Gallego Romero, Irene; Kristiansen, Karsten; Lambert, David M.; Brunak, Søren; Forster, Peter; Brinkmann, Bernd; Nehlich, Olaf; Bunce, Michael; Richards, Michael; Gupta, Ramneek; Bustamante, Carlos D.; Krogh, Anders; Foley, Robert A.; Lahr, Marta M.; Balloux, Francois; Sicheritz-Pontén, Thomas; Villems, Richard; Nielsen, Rasmus; Wang, Jun; Willerslev, Eske.

    In: Science, Vol. 334, No. 6052, 2011, p. 94-98.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  369. Published

    A new class of IMP dehydrogenase with a role in self-resistance of mycophenolic acid producing fungi. / Hansen, Bjarne Gram; Genee, Hans Jasper; Kaas, Christian Schrøder; Nielsen, Jakob Blæsbjerg; Regueira, Torsten Bak Høybye; Mortensen, Uffe Hasbro; Frisvad, Jens Christian; Patil, Kiran Raosaheb.

    In: B M C Microbiology, Vol. 11, No. 1, 2011, p. 202.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  370. Published

    An individual-based approach to explain plasmid invasion in bacterial populations. / Seoane, Jose Miguel; Yankelevich, Tatiana; Dechesne, Arnaud; Merkey, Brian; Sternberg, Claus; Smets, Barth F.

    In: F E M S Microbiology Ecology, Vol. 75, No. 1, 2011, p. 17-27.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  371. Published

    Antibiotics and the resistant microbiome. / Sommer, Morten; Dantas, Gautam.

    In: Current Opinion in Microbiology, Vol. 14, No. 5, 2011, p. 556-563.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  372. Published

    Antimicrobial evaluation of Huilliche plant medicine used to treat wounds. / Mølgaard, Per; Holler, Jes Gitz; Asar, Betül; Liberna, Iwona; Rosenbæk, Lise Bakkestrøm; Jebjerg, Christina Ploug; Jørgensen, Lene; Lauritzen, Jeanette; Guzman, Alfonso; Adsersen, Anne; Simonsen, Henrik Toft.

    In: Journal of Ethnopharmacology, Vol. 138, No. 1, 2011, p. 219-227.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  373. Published

    Apparatus for the Separation of Dry Matter From a Fluid. / Hansen, Preben Bøje (Inventor); Stubbe, Peter Reimer (Inventor); Birch, Hanne (Inventor); Sørensen, Kirsten Grønning (Inventor).

    Patent No.: US 7882960. Feb 08, 2011.

    Publication: Research › Patent – Annual report year: 2011

  374. Published

    Application of computational systems biology to explore environmental toxicity hazards.. / Audouze, Karine Marie Laure; Grandjean, Philippe.

    In: Environmental Health Perspectives, Vol. 119, No. 12, 2011, p. 1754-1759.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  375. Published

    Application of native signal sequences for recombinant proteins secretion in Pichia pastoris. / Borodina, Irina; Do, Duy Duc; Eriksen, Jens C.; Strucko, Tomas; Mortensen, Uffe Hasbro; Eliasson Lantz, Anna.

    2011. Abstract from Biochemical and Molecular Engineering : Emerging Frontiers, Seattle, Washington, USA, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  376. Published

    Ara h 1-digesta lose sensitizing activity when separated into fractions. / Bøgh, Katrine Lindholm; Barkholt, Vibeke; Rigby, Neil M.; Mills, Clare E.N.; Madsen, Charlotte Bernhard.

    2011. Poster session presented at 30th Congress of the European Academy of Allergy and Clinical Immunology, Istanbul, Turkey.

    Publication: Research - peer-review › Poster – Annual report year: 2011

  377. Published

    A randomized controlled intervention with fish oil versus sunflower oil from 9 to 18 months of age : exploring changes in growth and skinfold thicknesses. / Andersen, Anders D; Michaelsen, Kim F; Hellgren, Lars; Trolle, Ellen; Lauritzen, Lotte.

    In: Pediatric Research, Vol. 70, No. 4, 2011, p. 368-374.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  378. Published

    Are NOD2 polymorphisms linked to a specific disease endophenotype of Crohn's disease?. / Jensen, Stina Rikke; Nielsen, Ole Haagen; Pedersen, Susanne Brix.

    In: Inflammatory Bowel Diseases, Vol. 17, No. 11, 2011, p. 2392-2401.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  379. Published

    Aroma interactions with starch : Induction of carbohydrate acting enzymes from Aspergillus nidulans. / Jørgensen, Anders Dysted; Svensson, Birte (Supervisor); Blennow, Andreas (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: Research › Ph.d. thesis – Annual report year: 2011

  380. Published

    A simplified method for rapid quantification of intracellular nucleoside triphosphates by one-dimensional thin-layer chromatography. / Jendresen, Christian Bille; Kilstrup, Mogens; Martinussen, Jan.

    In: Analytical Biochemistry, Vol. 409, No. 2, 2011, p. 249-259.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  381. Published

    Aspergillus niger contains the cryptic phylogenetic species A. awamori. / Perrone, Giancarlo; Stea, Gaetano; Epifani, Filomena; Varga, János; Frisvad, Jens Christian; Samson, Robert A.

    In: Fungal Biology, Vol. 115, No. 11, 2011, p. 1138-1150.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  382. Published

    Aspergillus saccharolyticus sp. nov., a new black Aspergillus species isolated in Denmark. / Sørensen, Annette; Lübeck, Peter S.; Lübeck, Mette; Nielsen, Kristian Fog; Ahring, Birgitte K.; Teller, Philip J.; Frisvad, Jens Christian.

    In: International Journal of Systematic and Evolutionary Microbiology, Vol. 60, 2011, p. 3077-3083.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  383. Published

    Aspergillus triggers phenazine production in Pseudomonas aeruginosa. / Jensen, Britt Guillaume; Jelsbak, Lars; Søndergaard, Ib; Pedersen, Mona Højgaard; Frisvad, Jens Christian; Nielsen, Kristian Fog.

    2011. Abstract from European Congress on Microbial Biofilms – Basic and Clinical Aspects, Copenhagen, Denmark, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  384. Published

    Associating Drugs, Targets and Clinical Outcomes into an Integrated Network Affords a New Platform for Computer-Aided Drug Repurposing. / Oprea, Tudor; Nielsen, Sonny Kim; Ursu, Oleg; Yang, Jeremy J.; Taboureau, Olivier; Mathias, Stephen L.; Kouskoumvekaki, Irene; Sklar, Larry A.; Bologa, Cristian G.

    In: Molecular Informatics, Vol. 30, No. 2-3, 2011, p. 100-111.

    Publication: Research - peer-review › Conference article – Annual report year: 2011

  385. Published

    Associations between Fungal Species and Water-Damaged Building Materials. / Andersen, Birgitte; Frisvad, Jens Christian; Søndergaard, Ib; Rasmussen, Ib S.; Larsen, Lisbeth S.

    In: Applied and Environmental Microbiology, Vol. 77, No. 12, 2011, p. 4180-4188.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  386. Published

    A Systematic Study of Site-specific GalNAc-type O-Glycosylation Modulating Proprotein Convertase Processing. / Schjoldager, Katrine Ter-Borch Gram; Vester-Christensen, Malene B.; Goth, Christoffer K.; Petersen, Thomas Nordahl; Brunak, Søren; Bennett, Eric P.; Levery, Steven B.; Clausen, Henrik.

    In: Journal of Biological Chemistry, Vol. 286, No. 46, 2011, p. 40122-40132.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  387. Published

    A systems biology approach to identify potential health risk from chemical exposure. / Audouze, Karine Marie Laure.

    In: Miljø og Sundhed, Vol. 17, No. 1, 2011, p. 19-25.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  388. Published

    A workflow for peptide-based proteomics in a poorly sequenced plant: A case study on the plasma membrane proteome of banana. / Vertommen, A.; Laurell Blom Møller, Anders; Cordewener, J. H. G.; Swennen, R.; Panis, B.; Finnie, Christine; America, A. H. P.; Carpentier, S. C.

    In: Journal of Proteomics, Vol. 74, No. 8, 2011, p. 1218-1229.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  389. Published

    Bacillus subtilis Two-Component System Sensory Kinase DegS Is Regulated by Serine Phosphorylation in Its Input Domain. / Jers, Carsten; Kobir, Ahasanul; Søndergaard, Elsebeth Oline; Jensen, Peter Ruhdal; Mijakovic, Ivan.

    In: P L o S One, Vol. 6, No. 2, 2011, p. e14653.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  390. Published

    Back to the Roots: Prediction of Biologically Active Natural Products from Ayurveda Traditional Medicine. / Polur, Honey; Joshi, Tejal; Workman, Christopher; Lavekar, Gandhidas; Kouskoumvekaki, Irene.

    In: Molecular Informatics, Vol. 30, No. 2-3, 2011, p. 181-187.

    Publication: Research - peer-review › Conference article – Annual report year: 2011

  391. Published

    Bacterial adaptation during chronic infection revealed by independent component analysis of transcriptomic data. / Yang, Lei; Rau, Martin Holm; Yang, Liang; Høiby, Niels; Molin, Søren; Jelsbak, Lars.

    In: B M C Microbiology, Vol. 11, 2011, p. 184.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  392. Published

    BDDCS Applied to Over 900 Drugs. / Benet, Leslie Z.; Broccatelli, Fabio; Oprea, Tudor.

    In: The A A P S Journal. Annual Meeting Abstracts, Vol. 13, No. 4, 2011, p. 519-547.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  393. Published

    Bioactivity, Chemical Profiling, and 16S rRNA-Based Phylogeny of Pseudoalteromonas Strains Collected on a Global Research Cruise. / Vynne, Nikolaj Grønnegaard; Månsson, Maria; Nielsen, Kristian Fog; Gram, Lone.

    In: Marine Biotechnology, Vol. 13, No. 6, 2011, p. 1062-1073.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  394. Published

    Bioinformatics-Driven Identification and Examination of Candidate Genes for Non-Alcoholic Fatty Liver Disease. / Banasik, Karina; Justesen, Johanne M.; Hornbak, Malene; Krarup, Nikolaj T.; Gjesing, Anette P.; Sandholt, Camilla H.; Jensen, Thomas Skøt; Grarup, Niels; Andersson, Åsa; Jørgensen, Torben; Witte, Daniel R.; Sandbaek, Annelli; Lauritzen, Torsten; Thorens, Bernard; Brunak, Søren; Sørensen, Thorkild I. A.; Pedersen, Oluf; Hansen, Torben.

    In: P L o S One, Vol. 6, No. 1, 2011, p. e16542.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  395. Published

    Bistability in autoimmune diseases. / Rapin, Nicolas; Mosekilde, Erik; Lund, Ole.

    In: Autoimmunity, Vol. 44, No. 4, 2011, p. 256-260.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  396. Published

    Bovine colostrum is superior to enriched formulas in stimulating intestinal function and necrotising enterocolitis resistance in preterm pigs. / Møller, Hanne Kristine; Thymann, Thomas; Fink, Lisbeth Nielsen; Frokiaer, Hanne; Kvistgaard, Anne S.; Sangild, Per T.

    In: British Journal of Nutrition, Vol. 105, No. 1, 2011, p. 44-53.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  397. Published

    Cancer stem cell overexpression of nicotinamide N-methyltransferase enhances cellular radiation resistance. / D’Andrea, Filippo P.; Safwat, Akmal; Kassem, Moustapha; Gautier, Laurent; Overgaard, Jens; Horsman, Michael R.

    In: Radiotherapy & Oncology, Vol. 99, No. 3, 2011, p. 373-378.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  398. Published

    Cataloguing of toxic species of Aspergillus: Occurrence, polyphasic taxonomy and distribution. / Lopes, A.S.; Taniwaki, M.H.; Frisvad, Jens Christian; Fungaro, M.H.T.; Possari, C.K.; Ferranta, L.S.; Pereira, J.L.; Lamanaka, B.T.

    2011. Poster session presented at 26th Congresso Brasileiro Microbiologia, Foz do Iguazu, Brazil.

    Publication: Research - peer-review › Poster – Annual report year: 2011

  399. Published

    Characterization of barley glutathione peroxidase, a thioredoxin-dependent antioxidant enzyme in seeds. / Navrot, Nicolas; Finnie, Christine; Hägglund, Per; Svensson, Birte.

    2011. Abstract from Plant Biotech Denmark : Annual meeting, Copenhagen, .

    Publication: Research › Conference abstract for conference – Annual report year: 2011

  400. Published

    Characterization of Emericella nidulans RodA and DewA hydrophobin mutants. / Jensen, Britt Guillaume; Nielsen, Jakob Blæsbjerg; Pedersen, Mona Højgaard; Søndergaard, Ib; Frisvad, Jens Christian; Nielsen, Kristian Fog.

    2011. Abstract from The Fungal Genetics Conference, California, USA, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  401. Published

    Characterization of Emericella nidulans RodA and DewA hydrophobin mutants. / Jensen, Britt Guillaume; Nielsen, Jakob Blæsbjerg; Pedersen, Mona Højgaard; Søndergaard, Ib; Frisvad, Jens Christian; Nielsen, Kristian Fog.

    2011. Abstract from International Aspergillus Meeting, Pacific Grove, California, USA, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  402. Published

    Chemical rationale for selection of isolates for genome sequencing. / Rank, Christian; Larsen, Thomas Ostenfeld; Frisvad, Jens Christian.

    2011. Abstract from 26th Fungal Genetics Conference, Asilomar, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  403. Published

    ChemProt: a disease chemical biology database. / Taboureau, Olivier; Nielsen, Sonny Kim; Audouze, Karine Marie Laure; Weinhold, Nils; Edsgard, Stefan Daniel; Roque, francisco jose sousa simôes almeida; Kouskoumvekaki, Irene; Bora, A.; Curpan, R.; Jensen, Thomas Skøt; Brunak, Søren; Oprea, Tudor.

    In: Nucleic Acids Research, Vol. 39, No. Issue Suppl. 1, 2011, p. D367-372.

    Publication: Research - peer-review › Journal article – Annual report year: 2010

  404. Published

    Chitin stimulates production of the antibiotic andrimid in a Vibrio corallilyticus strain. / Wietz, Matthias; Månsson, Maria; Gram, Lone.

    In: Environmental Microbiology Reports, Vol. 3, No. 5, 2011, p. 559-564.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  405. Published

    Chromosomal Instability Confers Intrinsic Multidrug Resistance. / Lee, Alvin J. X.; Endesfelder, David; Rowan, Andrew J.; Walther, Axel; Birkbak, Nicolai Juul; Futreal, P. Andrew; Downward, Julian; Szallasi, Zoltan Imre; Tomlinson, Ian P. M.; Howell, Michael; Kschischo, Maik; Swanton, Charles.

    In: Cancer Research, Vol. 71, No. 5, 2011, p. 1858-1870.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  406. Published

    Comparative analysis of a large panel of non-starch polysaccharides reveals structures with selective regulatory properties in dendritic cells. / Wismar, René; Pedersen, Susanne Brix; Lærke, Helle Nygaard; Frøkiær, Hanne.

    In: Molecular Nutrition & Food Research, Vol. 55, No. 3, 2011, p. 443-454.

    Publication: Research - peer-review › Journal article – Annual report year: 2010

  407. Published

    Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. / Andersen, Mikael Rørdam; Salazar, Margarita Pena; Schaap, Peter J.; van de Vondervoort, Peter J. I.; Culley, David; Thykær, Jette; Frisvad, Jens Christian; Nielsen, Kristian Fog; Albang, Richard; Albermann, Kaj; Berka, Randy M.; Braus, Gerhard H.; Braus-Stromeyer, Susanna A.; Corrochano, Luis M.; Dai, Ziyu; van Dijck, Piet W.M.; Hofmann, Gerald; Lasure, Linda L.; Magnuson, Jon K.; Menke, Hildegard; Meijer, Martin; Meijer, Susan Lisette; Nielsen, Jakob Blæsbjerg; Nielsen, Michael Lynge; van Ooyen, Albert J.J.; Pel, Herman J.; Poulsen, Lars; Samson, Rob A.; Stam, Hein; Tsang, Adrian; van den Brink, Johannes M.; Atkins, Alex; Aerts, Andrea; Shapiro, Harris; Pangilinan, Jasmyn; Salamov, Asaf; Lou, Yigong; Lindquist, Erika; Lucas, Susan; Grimwood, Jane; Grigoriev, Igor V.; Kubicek, Christian P.; Martinez, Diego; van Peij, Noël N. M. E.; Roubos, Johannes A.; Nielsen, Jens; Baker, Scott E.

    In: Genome Research, Vol. 21, No. 6, 2011, p. 885-897.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  408. Published

    Complete Genome Sequence of the Commensal Enterococcus faecalis 62, Isolated from a Healthy Norwegian Infant. / Brede, Dag Anders; Snipen, Lars Gustav; Ussery, David; Nederbragt, Alexander J.; Nes, Ingolf F.

    In: Journal of Bacteriology, Vol. 193, No. 9, 2011, p. 2377-2378.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  409. Published

    Computational methods in epitope discovery : Abstract. / Lundegaard, Claus.

    In: INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, Vol. 28, No. Supplement 1, 2011, p. S54.

    Publication: Research - peer-review › Conference article – Annual report year: 2011

  410. Published

    Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response. / Li, Qiyuan; Eklund, Aron Charles; Birkbak, Nicolai Juul; Desmedt, Christine; Haibe-Kains, Benjamin; Sotiriou, Christos; Symmans, W. Fraser; Pusztai, Lajos; Brunak, Søren; Richardson, Andrea L; Szallasi, Zoltan Imre.

    In: B M C Bioinformatics, Vol. 12, No. 1, 2011, p. 310.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  411. Published

    Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia. / Wesolowska, Agata; Dalgaard, M. D.; Borst, L.; Gautier, Laurent; Bak, M.; Weinhold, Nils; Nielsen, B. F.; Helt, L. R.; Audouze, Karine Marie Laure; Nersting, J; Tommerup, N.; Brunak, Søren; Sicheritz-Pontén, Thomas; Leffers, H.; Schmiegelow, K.; Gupta, Ramneek.

    In: Leukemia, Vol. 25, 2011, p. 1001-1006.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  412. Published

    Course on Advanced Analytical Chemistry and Chromatography. / Andersen, Jens Enevold Thaulov; Fristrup, Peter; Nielsen, Kristian Fog; Hägglund, Per; Sloth, Jens Jørgen; Jankova Atanasova, Katja.

    In: 7th International CDIO Conference 2011. Technical University of Denmark, 2011.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2011

  413. Published

    Crystal Structure of α-Galactosidase from Lactobacillus acidophilus NCFM: Insight into Tetramer Formation and Substrate Binding. / Fredslund, Folmer; Abou Hachem, Maher; Larsen, Rene Jonsgaard; Sørensen, Pernille Gerd; Coutinho, Pedro M.; Lo Leggio, Leila; Svensson, Birte.

    In: Journal of Molecular Biology, Vol. 412, No. 3, 2011, p. 466-480.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  414. Published

    Current understanding of multi-species biofilms. / Yang, Liang; Liu, Yang; Wu, Hong; Høiby, Niels; Molin, Søren; Song, Zhi-jun.

    In: International Journal of Oral Science, Vol. 3, No. 2, 2011, p. 74-81.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  415. Published

    Dereplication of Microbial Natural Products by LC-DAD-TOFMS. / Nielsen, Kristian Fog; Månsson, Maria; Rank, Christian; Frisvad, Jens Christian; Larsen, Thomas Ostenfeld.

    In: Journal of Natural Products, Vol. 74, No. 11, 2011, p. 2338-2348.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  416. Published

    Distinct roles of extracellular polymeric substances in Pseudomonas aeruginosa biofilm development. / Yang, Liang; Hu, Yifan; Liu, Yang; Zhang, Jingdong; Ulstrup, Jens; Molin, Søren.

    In: Environmental Microbiology, Vol. 13, No. 7, 2011, p. 1705-1717.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  417. Published

    Distribution of sterigmatocystin in filamentous fungi. / Rank, Christian; Nielsen, Kristian Fog; Larsen, Thomas Ostenfeld; Varga, Janos; Samson, Rob A.; Frisvad, Jens Christian.

    In: Fungal Biology, Vol. 115, No. 4-5, 2011, p. 406-420.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  418. Published

    Diversion of flux toward sesquiterpene production in Saccharomyces cerevisiae by fusion of host and heterologous enzymes.. / Albertsen, Line; Chen, Yun; Bach, Lars Stougaard; Rattleff, Stig; Maury, Jerome; Pedersen, Susanne Brix; Nielsen, Jens; Mortensen, Uffe Hasbro.

    In: Applied and Environmental Microbiology, Vol. 77, No. 3, 2011, p. 1033-1040.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  419. Published

    DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation. / Shaknovich, Rita; Cerchietti, Leandro; Tsikitas, Lucas; Kormaksson, Matthias; De, Subhajyoti; Figueroa, Maria E.; Ballon, Gianna; Yang, Shao Ning; Weinhold, Nils; Reimers, Mark; Clozel, Thomas; Luttrop, Karin; Ekstrom, Tomas J.; Frank, Jared; Vasanthakumar, Aparna; Godley, Lucy A.; Michor, Franziska; Elemento, Olivier; Melnick, Ari.

    In: Blood, Vol. 118, No. 13, 2011, p. 3559-3569.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  420. Published

    Drug repurposing from an academic perspective. / Oprea, Tudor; Bauman, Julie E.; Bologa, Cristian G.; Buranda, Tione; Chigaev, Alexandre; Edwards, Bruce S.; Jarvik, Jonathan W.; Gresham, Hattie D.; Haynes, Mark K.; Hjelle, Brian; Hromas, Robert; Hudson, Laurie; Mackenzie, Debra A.; Muller, Carolyn Y.; Reed, John C.; Simons, Peter C.; Smagley, Yelena; Strouse, Juan; Surviladze, Zurab; Thompson, Todd; Ursu, Oleg; Waller, Anna; Wandinger-Ness, Angela; Winter, Stuart S.; Wu, Yang; Young, Susan M.; Larson, Richard S.; Willman, Cheryl; Sklar, Larry A.

    In: Drug Discovery Today: Therapeutic Strategies, Vol. 8, No. 3-4, 2011, p. 61-69.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  421. Published

    Dynamics of Mutator and Antibiotic-Resistant Populations in a Pharmacokinetic/Pharmacodynamic Model of Pseudomonas aeruginosa Biofilm Treatment. / Macià, María D.; Pérez, José L.; Molin, Søren; Oliver, Antonio.

    In: Antimicrobial Agents and Chemotherapy, Vol. 55, No. 11, 2011, p. 5230-5237.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  422. Published

    Effect of dairy fat on plasma phytanic acid in healthy volunteers - a randomized controlled study. / Werner, Louise B.; Hellgren, Lars; Raff, Marianne; Jensen, Søren K.; Petersen, Rikke A.; Drachmann, Tue; Tholstrup, Tine.

    In: Lipids in Health and Disease, Vol. 10, No. 1, 2011, p. 95.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  423. Published

    Effect of industrially produced trans fat on markers of systemic inflammation: evidence from a randomized trial in women. / Bendsen, Nathalie T.; Stender, Steen; Szecsi, Pal B.; Pedersen, Steen B.; Basu, Samar; Hellgren, Lars; Newman, John W.; Larsen, Thomas M.; Haugaard, Steen B.; Astrup, Arne.

    In: Journal of Lipid Research, Vol. 52, No. 10, 2011, p. 1821-1828.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  424. Published

    Effect of kinetic parameters on heterologous protein production: a sysbio approach. / Nandy, Subir Kumar; Rattleff, Stig; Thykær, Jette; Eliasson Lantz, Anna.

    2011. Poster session presented at 6th Danish Conference on Biotechnology and Molecular Biology, Vejle, Denmark.

    Publication: Research - peer-review › Poster – Annual report year: 2011

  425. Published

    Effect of Laser and LED on Enzymatic Production of Ceramide. / Hongyu, Zhang; Zhang, Long; Tidemand-Lichtenberg, Peter; Buchhave, Preben; Xu, Xuebing; Li, Yingxin.

    In: Photochemistry and Photobiology, Vol. 87, No. 1, 2011, p. 131-136.

    Publication: Research - peer-review › Journal article – Annual report year: 2010

  426. Published

    Effect of organic acids on growth of Aspergillus carbonarius and production of ochratoxin A. / Copetti, M. V.; Lamanaki, B.T.; Frisvad, Jens Christian; Taniwaki, M.H.

    2011. Poster session presented at 26th Congresso Brasileiro Microbiologia, Foz do Iguazu, Brazil.

    Publication: Research - peer-review › Poster – Annual report year: 2011

  427. Published

    Effects of ginseng on Pseudomonas aeruginosa motility and biofilm formation. / Wu, Hong; Lee, Baoleri; Yang, Liang; Wang, Hengzuang; Givskov, Michael Christian; Molin, Søren; Høiby, Niels; Song, Zhijun.

    In: F E M S Immunology and Medical Microbiology, Vol. 62, No. 1, 2011, p. 49-56.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  428. Published

    Effects of Topical Corticosteroid and Tacrolimus on Ceramides and Irritancy to Sodium Lauryl Sulphate in Healthy Skin. / Jungersted, Jakob Mutanu; Høgh, Julie Kaae; Hellgren, Lars; Jemec, Gregor B.E.; Agner, Tove.

    In: Acta Dermato Venereologica, Vol. 91, No. 3, 2011, p. 290-294.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  429. Published

    Efficient secretory expression of functional barley limit dextrinase inhibitor by high cell-density fermentation of Pichia pastoris. / Jensen, Johanne Mørch; Vester-Christensen, Malene Bech; Møller, Marie Sofie; Bønsager, Birgit Christine; Christensen, Hans Erik Mølager; Abou Hachem, Maher; Svensson, Birte.

    In: Protein Expression and Purification, Vol. 79, No. 2, 2011, p. 217-222.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  430. Published

    Energy Production from Marine Biomass (Ulva lactuca). / Nikolaisen, Lars ; Daugbjerg Jensen, Peter ; Svane Bech, Karin ; Dahl, Jonas; Busk, Jørgen; Brødsgaard, Torben ; Rasmussen, Michael Bo ; Bruhn, Annette; Bjerre, Anne-Belinda ; Bangsø Nielsen, Henrik; Albert, Kristian Rost; Ambus, Per; Kádár, Zsófia; Heiske, Stefan; Sander, Bo; Schmidt, Erik Ravn.

    Danish Technological Institute, 2011. 72 p.

    Publication: Research › Report – Annual report year: 2012

  431. Published

    Engineering the spatial organization of metabolic pathways. / Albertsen, Line; Maury, Jerome; Bach, Lars Stougaard; Nielsen, Jens; Mortensen, Uffe Hasbro.

    2011. Abstract from 6th Danish Conference on Biotechnology and Molecular Biology, Vejle, Denmark.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  432. Published

    Enterotypes of the human gut microbiome. / Arumugam, Manimozhiyan; Raes, Jeroen; Pelletier, Eric; Le Paslier, Denis; Yamada, Takuji; Mende, Daniel R.; Fernandes, Gabriel R.; Tap, Julien; Bruls, Thomas; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Borruel, Natalia; Casellas, Francesc; Fernandez, Leyden; Gautier, Laurent; Hansen, Torben; Hattori, Masahira; Hayashi, Tetsuya; Kleerebezem, Michiel; Kurokawa, Ken; Leclerc, Marion; Levenez, Florence; Manichanh, Chaysavanh; Nielsen, Henrik Bjørn; Nielsen, Trine; Pons, Nicolas; Poulain, Julie; Qin, Junjie; Sicheritz-Pontén, Thomas; Tims, Sebastian; Torrents, David; Ugarte, Edgardo; Zoetendal, Erwin G.; Wang, Jun; Guarner, Francisco; Pedersen, Oluf; de Vos, Willem M.; Brunak, Søren; Doré, Joel; Antolín, María; Artiguenave, François; Blottiere, Hervé M.; Almeida, Mathieu; Brechot, Christian; Cara, Carlos; Chervaux, Christian; Cultrone, Antonella; Delorme, Christine; Denariaz, Gérard; Dervyn, Rozenn; Foerstner, Konrad U.; Friss, Carsten; van de Guchte, Maarten; Guedon, Eric; Haimet, Florence; Huber, Wolfgang; van Hylckama-Vlieg, Johan; Jamet, Alexandre; Juste, Catherine; Kaci, Ghalia; Knol, Jan; Lakhdari, Omar; Layec, Severine; Le Roux, Karine; Maguin, Emmanuelle; Mérieux, Alexandre; Melo Minardi, Raquel; M'rini, Christine; Muller, Jean; Oozeer, Raish; Parkhill, Julian; Renault, Pierre; Rescigno, Maria; Sanchez, Nicolas; Sunagawa, Shinichi; Torrejon, Antonio; Turner, Keith; Vandemeulebrouck, Gaetana; Varela, Encarna; Winogradsky, Yohanan; Zeller, Georg; Weissenbach, Jean; Ehrlich, S. Dusko; Bork, Peer.

    In: Nature, Vol. 473, No. 7346, 2011, p. 174-180.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  433. Published

    Enzymatic synthesis of β-xylosyl-oligosaccharides by transxylosylation using two beta-xylosidases of glycoside hydrolase family 3 from Aspergillus nidulans FGSC A4. / Dilokpimol, Adiphol; Nakai, Hiroyuki; Gotfredsen, Charlotte Held; Appeldoorn, Maaike; Baumann, Martin; Nakai, Natsuko; Schols, Henk A.; Abou Hachem, Maher; Svensson, Birte.

    In: Carbohydrate Research, Vol. 346, No. 3, 2011, p. 421-429.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  434. Published

    Erratum: Pattern differentiation in co-culture biofilms formed by Staphylococcus aureus and Pseudomonas aeruginosa. / Yang, Liang; Liu, Yang; Markussen, Trine; Høiby, Niels; Tolker-Nielsen, Tim; Molin, Søren.

    In: F E M S Immunology and Medical Microbiology, Vol. 63, No. 1, 2011, p. 151-151.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  435. Published

    Evolution and Adaptation in Pseudomonas aeruginosa Biofilms Driven by Mismatch Repair System-Deficient Mutators. / Luján, Adela M.; Maciá, María D.; Yang, Liang; Molin, Søren; Oliver, Antonio; Smania, Andrea M.

    In: P L o S One, Vol. 6, No. 11, 2011, p. e27842.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  436. Published

    Evolutionary dynamics of bacteria in a human host environment. / Yang, Lei; Jelsbak, Lars; Marvig, Rasmus Lykke; Pedersen, Søren Damkiær; Workman, Christopher; Rau, Martin Holm; Hansen, Susse Kirkelund; Folkesson, Anders; Johansen, Helle Krogh; Ciofu, Oana; Høiby, Niels; Sommer, Morten; Molin, Søren.

    In: National Academy of Sciences. Proceedings, Vol. 108, No. 18, 2011, p. 7481-7486.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  437. Published

    Exo-metabolome of some fungal isolates growing on cork-based medium. / Barreto, M. C.; Frisvad, Jens Christian; Larsen, Thomas Ostenfeld; Mogensen, Jesper; San-Romão, Maria Vitória.

    In: European Food Research and Technology, Vol. 232, No. 4, 2011, p. 575-582.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  438. Published

    Experience with the use of online lectures, video Modules, and wiki-websites in engineering education. / Pedersen, Anders Gorm; Wernersson, Rasmus.

    In: 7th International CDIO Conference 2011. Technical University of Denmark, 2011.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2011

  439. Published

    Experimental methods and modeling techniques for description of cell population heterogeneity. / Lencastre Fernandes, Rita; Nierychlo, M.; Lundin, L.; Pedersen, Anne Egholm; PuentesTellez, P. E.; Dutta, A.; Carlqvist, Magnus; Bolic, Andrijana; Schäpper, Daniel; Brunetti, Anna Chiara; Helmark, Søren; Heins, Anna-Lena; Jensen, Anker Degn; Nopens, I.; Rottwitt, Karsten; Szita, Nicolas; van Elsas, J. D.; Nielsen, P. H.; Martinussen, Jan; Sørensen, S. J.; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology Advances, Vol. 29, No. 6, 2011, p. 575-599.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  440. Published

    Exploring a Global Collection of Marine Bacteria for new Antibacterial Compounds : Oral presentation. / Månsson, Maria; Nielsen, Kristian Fog; Gram, Lone; Larsen, Thomas Ostenfeld.

    2011. Abstract from 13th International Symposium on Marine Natural Products, Phuket, Thailand, 17-22 Oct, .

    Publication: Research › Conference abstract for conference – Annual report year: 2011

  441. Published

    Expression of enzymatically inactive wasp venom phospholipase A1 in Pichia pastoris. / Borodina, Irina; Jensen, Bettina M.; Wagner, Tim; Abou Hachem, Maher; Søndergaard, Ib; Poulsen, Lars Kærgaard.

    2011. Abstract from 6th Danish Conference on Biotechnology and Molecular Biology, Vejle, Denmark.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  442. Published

    Expression of Enzymatically Inactive Wasp Venom Phospholipase A1 in Pichia pastoris. / Borodina, Irina; Jensen, Bettina M.; Wagner, Tim; Abou Hachem, Maher; Søndergaard, Ib; Poulsen, Lars Kærgaard.

    In: P L o S One, Vol. 6, No. 6, 2011, p. e21267.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  443. Published

    Ex vivo intestinal adhesion of Escherichia coli LF82 in Crohn’s disease. / Jensen, Stina Rikke; Fink, Lisbeth Nielsen; Nielsen, Ole Haagen; Brynskov, Jørn; Pedersen, Susanne Brix.

    In: Microbial Pathogenesis, Vol. 51, No. 6, 2011, p. 426-431.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  444. Published

    FARO server: Meta-analysis of gene expression by matching gene expression signatures to a compendium of public gene expression data. / Manijak, Mieszko P.; Nielsen, Henrik Bjørn.

    In: B M C Research Notes, Vol. 4, No. 1, 2011, p. 181.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  445. Published

    Fed-batch production of hydrophobin RodB from Aspergillus fumigatus in host Pichia pastoris. / Pedersen, Mona Højgaard; Borodina, Irina; Frisvad, Jens Christian; Søndergaard, Ib.

    2011. Abstract from Biofilms in Nosocomial Fungal Infections : ESCMID Postgraduate Education Course, Paris, France, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  446. Published

    Fed-batch production of the hydrophobins RodA and RodB from Aspergillus fumigatus in host Pichia pastoris. / Pedersen, Mona Højgaard; Borodina, Irina; Frisvad, Jens Christian; Søndergaard, Ib.

    2011. Abstract from 26th Fungal Genetics Conference, Asilomar, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  447. Published

    Fish oil combined with SCFA synergistically prevent tissue accumulation of NEFA during weight loss in obese mice. / Pedersen, Maiken Højgaard; Lauritzen, Lotte; Hellgren, Lars.

    In: British Journal of Nutrition, Vol. 106, No. 10, 2011, p. 1449-1456.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  448. Published

    Fleming's penicillin producing streain is not Penicillium chrysogenum but P. rubens. / Houbraken, Jos; Frisvad, Jens Christian; Samson, Robert A.

    In: I M A Fungus, Vol. 2, No. 1, 2011, p. 87-95.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  449. Published

    Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803. / Montagud, Arnau; Zelezniak, Aleksej; Navarro, Emilio; de Córdoba, Pedro Fernández; Urchueguía, Javier F.; Patil, Kiran Raosaheb.

    In: Biotechnology Journal, Vol. 6, No. 3, 2011, p. 330-342.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  450. Published

    Food and soil-borne Penicillia in Arctic environments: Chemical diversity. / Frisvad, Jens Christian (Invited author).

    2011. Abstract from Polar and Alpine Microbiology, Ljubljana, Slovenia, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  451. Published

    Formation of cereulide and enterotoxins by Bacillus cereus in fermented African locust beans. / Thorsen, Line; Azokpota, Paulin; Munk Hansen, Bjarne; Rønsbo, Mie Hvillum; Nielsen, Kristian Fog; Hounhouigan, D. Joseph; Jakobsen, Mogens.

    In: Food Microbiology, Vol. 28, No. 8, 2011, p. 1441-1447.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  452. Published

    Forsøg med enkeltkerne-analyser af majs fra Sydafrika. / Nielsen, Kristian Fog; Iversen, Anita.

    In: Dansk Kemi, Vol. 92, No. 9, 2011.

    Publication: Research › Journal article – Annual report year: 2012

  453. Published

    From protein catalogues towards targeted proteomics approaches in cereal grains. / Finnie, Christine; Sultan, Abida; Grasser, Klaus D.

    In: Phytochemistry, Vol. 72, No. 10, 2011, p. 1145-1153.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  454. Published

    Fumonisin and Ochratoxin Production in Industrial Aspergillus niger Strains. / Frisvad, Jens Christian; Larsen, Thomas Ostenfeld; Thrane, Ulf; Meijer, Martin; Varga, Janos; Samson, Robert A.; Nielsen, Kristian Fog.

    In: P L o S One, Vol. 6, No. 8, 2011, p. e23496.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  455. Published

    Fumonisin from Aspergillus niger in grapes and derived products. / Mogensen, Jesper Mølgaard; Knudsen, Peter Boldsen; Frisvad, Jens Christian; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog.

    2011. Poster session presented at 32nd Mycotoxin Workshop, Kgs. Lyngby, Denmark.

    Publication: Research - peer-review › Poster – Annual report year: 2011

  456. Published

    Fumonisins from Aspergillus niger in grapes and derived products. / Mogensen, Jesper Mølgaard; Knudsen, Peter Boldsen; Larsen, Thomas Ostenfeld; Frisvad, Jens Christian; Thrane, Ulf; Nielsen, Kristian Fog.

    2011. Poster session presented at The MycoRed Africa Conference, Cape Town, South Africa, .

    Publication: Research - peer-review › Poster – Annual report year: 2011

  457. Published

    Fumonisins in Aspergillus niger: Industrial and food aspects. / Frisvad, Jens Christian; Nielsen, Kristian Fog; Mogensen, Jesper; Thrane, Ulf; Larsen, Thomas Ostenfeld.

    2011. Abstract from 26th Fungal Genetics Conference, Asilomar, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  458. Published

    Fumonisins in South African subsistence maize - A single kernel approach. / Mogensen, Jesper Mølgaard; Sørensen, Stine Mørcholdt; Sulyok, Michael; Shephard, Gordon; van der Westhuizen, Liana; Frisvad, Jens Christian; Thrane, Ulf; Krska, Rudolf; Nielsen, Kristian Fog.

    2011. Poster session presented at The MycoRed Africa Conference, Cape Town, South Africa, .

    Publication: Research - peer-review › Poster – Annual report year: 2011

  459. Published

    Functional analysis of frequently expressed Chinese rhesus macaque MHC class I molecules Mamu-A1*02601 and Mamu-B*08301 reveals HLA-A2 and HLA-A3 supertypic specificities. / Southwood, Scott; Solomon, Christopher; Hoof, Ilka; Rudersdorf, Richard; Sidney, John; Peters, Bjoern; Wahl, Angela; Hawkins, Oriana; Hildebrand, William; Mothé, Bianca R.; Sette, Alessandro.

    In: Immunogenetics, Vol. 63, No. 5, 2011, p. 275-290.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  460. Published

    Fungal metabolomics. / Frisvad, Jens Christian (Invited author).

    2011. Paper presented at 26th Congresso Brasileiro Microbiologia, Foz do Iguazu, Brazil.

    Publication: Research - peer-review › Paper – Annual report year: 2011

  461. Published

    Gene Expression Signature TOPFOX Reflecting Chromosomal Instability Refines Prediction of Prognosis in Grade 2 Breast Cancer : Abstract of poster presentation. / Szasz, A.; Li, Qiyuan; Sztupinszki, Z.; Tokes, A. M.; Szekely, B.; Szendroi, M.; Gyorffy, B.; Szallasi, Z.; Swanton, C.; Kulkal, J.

    In: EUROPEAN JOURNAL OF CANCER, Vol. 47, No. Supplement 1, 2011, p. S180.

    Publication: Research - peer-review › Conference article – Annual report year: 2011

  462. Published

    Genome-Based In Silico Identification of New Mycobacterium tuberculosis Antigens Activating Polyfunctional CD8+ T Cells in Human Tuberculosis. / Tang, Sheila Tuyet; van Meijgaarden, Krista E.; Caccamo, Nadia; Guggino, Giuliana; Klein, Michel R.; van Weeren, Pascale; Kazi, Fatima; Stryhn, Anette; Zaigler, Alexander; Sahin, Ugur; Buus, Søren; Dieli, Francesco; Lund, Ole; Ottenhoff, Tom H. M.

    In: Journal of Immunology, Vol. 186, No. 2, 2011, p. 1068-1080.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  463. Published

    Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse. / Takamiya, Monica; Özen, Asli Ismihan; Rasmussen, Morten; Alter, Thomas; Gilbert, Tom; Ussery, David; Knøchel, Susanne.

    In: Standards in Genomic Sciences, Vol. 4, No. 2, 2011, p. 113-122.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  464. Published

    Genome sequences of two stress-tolerant Campylobacter jejuni poultry strains, 305 and DFVF1099.. / Takamiya, Monica; Özen, Asli Ismihan; Rasmussen, Morten; Alter, Thomas; Gilbert, Tom; Ussery, David; Knøchel, S.

    In: Journal of Bacteriology, Vol. 193, No. 19, 2011, p. 5546-5547.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  465. Published

    (+)-Geodin from Aspergillus terreus.. / Rønnest, Mads Holger; Nielsen, Morten Thrane; Leber, Blanka; Mortensen, Uffe Hasbro; Krämer, Alwin; Clausen, Mads Hartvig; Larsen, Thomas Ostenfeld; Harris, Pernille.

    In: Acta Crystallographica. Section C: Crystal Structure Communications, Vol. 67, No. Pt 3, 2011, p. o125-o128.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  466. Published

    ”Good teaching practice” at DTU Systems Biology - sustaining quality in teaching and learning. / Kilstrup, Mogens; Hellgren, Lars; Andersson, Pernille Hammar.

    In: 7th International CDIO Conference 2011. Technical University of Denmark, 2011.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2011

  467. Published

    Gradient simulation experiments for targeting population heterogeneity in continuous Saccharomyces cerevisiae fermentation. / Heins, Anna-Lena; Lencastre Fernandes, Rita; Lundin, L.; Carlquist, M.; Sörensen, S.; Gernaey, Krist; Eliasson Lantz, Anna.

    2011. Abstract from Recent Advances in Fermentation Technology, Marco Island, Florida, USA, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  468. Published

    Growing and Analyzing Biofilms in Flow Chambers. / Tolker-Nielsen, Tim; Sternberg, Claus.

    In: Current Protocols in Microbiology. Vol. 1B.2 John Wiley & Sons Ltd, 2011.

    Publication: Research - peer-review › Book chapter – Annual report year: 2011

  469. Published

    Hesseltins B–G, novel meroterpenoids from a new Penicillium species. / Phipps, Richard Kerry; Gotfredsen, Charlotte Held; Paludan, Søren R.; Frisvad, Jens Christian; Eriksen, Kathrine; Petersen, Bent O.; Duus, Jens Ø.; Larsen, Thomas Ostenfeld.

    In: Tetrahedron Letters, Vol. 52, No. 5, 2011, p. 598-601.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  470. Published

    Heterogeneous Microbial Populations: using flow cytometric data for building dynamic distributed models. / Lencastre Fernandes, Rita; Carlquist, M.; Lundin, L.; Heins, Anna-Lena; Dutta, Abhishek; Nopens, I.; Johansen, Søren J.; Jensen, Anker Degn; Eliasson Lantz, Anna; Gernaey, Krist.

    2011. Abstract from 8th European Congress of Chemical Engineering, Berlin, Germany.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  471. Published

    Heterogeneous Microbial Populations: Using Flow Cytometric Data for Building Dynamic Distributed Models. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Nopens, Ingmar; Jensen, Anker Degn; Johansen, Søren J.; Eliasson Lantz, Anna; Gernaey, Krist.

    2011. Abstract from 2011 AIChE Annual Meeting, Minneapolis, MN, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  472. Published

    Heterologous expression of polyketides in fungi and optimization by an in silico guided approach. / Mølgaard, Louise; Hansen, Bjarne Gram; Nielsen, Jakob Blæsbjerg; Patil, Kiran Raosaheb; Thykær, Jette; Mortensen, Uffe Hasbro.

    2011. Poster session presented at Conference on Synthetic Biology and Cell Factories, Vejle, Danmark, .

    Publication: Research - peer-review › Poster – Annual report year: 2011

  473. Published

    Heterozygous deletion at the RLN1 locus in a family with testicular germ cell cancer identified by integrating copy number variation data with phenome and interactome information. / Edsgard, Stefan Daniel; Scheel, M.; Hansen, Niclas Tue; Ralfkiaer, U.; Jensen, Thomas Skøt; Skakkebæk, N. E.; Brunak, Søren; Gupta, Ramneek; Rajpert‐De Meyts, E.; Ottesen, A. M.

    In: International Journal of Andrology, Vol. 34, No. 4pt2, 2011, p. e122-e132.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  474. Published

    High-yield production of hydrophobins RodA and RodB from Aspergillus fumigatus in Pichia pastoris. / Pedersen, Mona Højgaard; Borodina, Irina; Moresco, Jacob Lange; Svendsen, Winnie Edith; Frisvad, Jens Christian; Søndergaard, Ib.

    In: Applied Microbiology and Biotechnology, Vol. 90, No. 6, 2011, p. 1923-1932.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  475. Published

    HLArestrictor-a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides. / Larsen, Malene Erup; Kloverpris, H.; Stryhn, A.; Koofhethile, C.K.; Sims, S.; Ndung'u, T.; Goulder, P.; Buus, S.; Nielsen, Morten.

    In: Immunogenetics, Vol. 63, No. 1, 2011, p. 43-55.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  476. Published

    Homology model of a complex between NADPH-dependent thioredoxin reductase (NTR) and thioredoxin from barley. / Kirkensgaard, Kristine Groth; Hägglund, Per; Finnie, Christine; Svensson, Birte; Henriksen, A.

    2011. Abstract from Plant Biotech Denmark : Annual meeting, Copenhagen, .

    Publication: Research › Conference abstract for conference – Annual report year: 2011

  477. Published

    Human Leukocyte Antigen (HLA) Class I Restricted Epitope Discovery in Yellow Fewer and Dengue Viruses: Importance of HLA Binding Strength.. / Lund, Ole; Nascimento, Eduardo J. M.; Maciel, Milton, Jr; Nielsen, Morten; Larsen, Mette Voldby; Lundegaard, Claus; Harndahl, Mikkel; Lamberth, Kasper; Buus, Søren; Salmon, Jérôme; August, Thomas J.; Marques, Ernesto T A, Jr.

    In: P L o S One, Vol. 6, No. 10, 2011, p. e26494.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  478. Published

    Hypersaline waters - a potential source of foodborne toxigenic aspergilli and penicillia. / Butinar, Lorena; Frisvad, Jens Christian; Gunde-Cimerman, Nina.

    In: F E M S Microbiology Ecology, Vol. 77, No. 1, 2011, p. 186-199.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  479. Published

    Identification of MHC class II restricted T‐cell‐mediated reactivity against MHC class I binding Mycobacterium tuberculosis peptides. / Wang, Mingjun; Tang, Sheila Tuyet; Stryhn, Anette; Justesen, Sune; Larsen, Mette Voldby; Dziegiel, Morten H.; Lewinsohn, David M.; Buus, Søren; Lund, Ole; Claesson, Mogens H.

    In: Immunology, Vol. 132, No. 4, 2011, p. 482-491.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  480. Published

    Ileal adhesion of virulent E. coli LF82 is not enhanced in Crohn’s disease. / Jensen, Rikke S.; Fink, Lisbeth Nielsen; Pedersen, Susanne Brix; Brynskov, J.; Nielsen, Haagen O.

    In: Inflammatory Bowel Diseases. Vol. 17, S1 2011. p. P-017.

    Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2011

  481. Published

    Immune system simulation online. / Rapin, Nicolas; Lund, Ole; Castiglione, Filippo.

    In: Bioinformatics, Vol. 27, No. 14, 2011, p. 2013-2014.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  482. Published

    Immunogenic CTL Epitopes Tend to be Stably Bound to MHC Class I Molecules: Implications for 'Holes in the Stably Bound MHC-I Repertoire'. / Harndahl, M.; Rasmussen, M.; Roder, G.; Pedersen, I. D.; Sørensen, Mikael; Nielsen, Morten; Buus, S.

    In: Scandinavian Journal of Immunology, Vol. 73, No. 4, 2011, p. 353-353.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2011

  483. Published

    Implications of high-temperature events and water deficits on protein profiles in wheat (Triticum aestivum L. cv. Vinjett) grain. / Yang, Fen; Jørgensen, Anders Dysted; Li, Huawei; Søndergaard, Ib; Finnie, Christine; Svensson, Birte; Jiang, Dong; Wollenweber, Bernd; Jacobsen, Susanne.

    In: Proteomics, Vol. 11, No. 9, Sp. Iss. SI, 2011, p. 1684-1695.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  484. Published

    Improved glucose tolerance after intensive life style intervention occurs without changes in muscle ceramide or triacylglycerol in morbidly obese subjects. / Helge, J. W.; Stallknecht, B.; Drachmann, Tue; Hellgren, Lars; Jimenez-Jimenez, R.; Andersen, J. L.; Richelsen, B.; Bruun, J. M.

    In: Acta Physiologica (Print), Vol. 201, No. 3, 2011, p. 357-364.

    Publication: Research - peer-review › Journal article – Annual report year: 2010

  485. Published

    Increased isobutanol production in Saccharomyces cerevisiae by overexpression of genes in valine metabolism. / Chen, Xiao; Nielsen, Kristian Fog; Borodina, Irina; Kielland-Brandt, Morten; Karhumaa, Kaisa.

    In: Biotechnology for Biofuels, Vol. 4, No. 1, 2011, p. 21.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  486. Published

    Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes. / Bang-Berthelsen, Claus H.; Pedersen, Lykke; Fløyel, Tina; Hagedorn, Peter; Gylvin, Titus; Pociot, Flemming.

    In: B M C Genomics, Vol. 12, No. 1, 2011, p. 97.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  487. Published

    Induction of Foot-and-Mouth Disease Virus-Specific Cytotoxic T Cell Killing by Vaccination. / Patch, J.R.; Pedersen, Lasse Eggers; Toka, F.N.; Moreas, M.; Grubman, M.J.; Nielsen, Morten; Jungersen, Gregers; Buus, S.; Golde, W.T.

    In: Clinical and Vaccine Immunology, Vol. 18, No. 2, 2011, p. 280-288.

    Publication: Research - peer-review › Journal article – Annual report year: 2010

  488. Published

    Inhibition of Virulence Gene Expression in Staphylococcus aureus by Novel Depsipeptides from a Marine Photobacterium. / Månsson, Maria; Nielsen, Anita; Kjærulff, Louise; Gotfredsen, Charlotte Held; Wietz, Matthias; Ingmer, Hanne; Gram, Lone; Larsen, Thomas Ostenfeld.

    In: Marine Drugs, No. 9, 2011, p. 2537.2552.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  489. Published

    In Silico Predictions of hERG Channel Blockers in Drug Discovery : From Ligand-Based and Target-Based Approaches to Systems Chemical Biology. / Taboureau, Olivier; Sørensen, Flemming Steen.

    In: Combinatorial Chemistry & High Throughput Screening, Vol. 14, No. 5, 2011, p. 375-387.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  490. Published

    Integrating phenotypic data from electronic patient records with molecular level systems biology : Abstract of invited lecture. / Brunak, Søren (Invited author).

    In: FEBS JOURNAL, Vol. 278, No. Suppl. s1, 2011, p. 27.

    Publication: Research - peer-review › Conference article – Annual report year: 2011

  491. Published

    Interdisciplinary Evaluation of Broadly-Reactive HLA Class II Restricted Epitopes Eliciting HIV-Specific CD4+T Cell Responses : Abstract of poster presentation. / Buggert, M.; Norström, M.; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, A. C.

    In: AIDS RESEARCH AND HUMAN RETROVIRUSES, Vol. 27, No. 10, 2011, p. A88-A88.

    Publication: Research - peer-review › Conference article – Annual report year: 2011

  492. Published

    Intrauterine exposure to mild analgesics is a risk factor for development of male reproductive disorders in human and rat. / Kristensen, David Møbjerg; Hass, Ulla; Lesné, Laurianne; Lottrup, Grete; Jacobsen, Pernille Rosenskjold; Desdoits-Lethimonier, Christele; Boberg, Julie; Petersen, Jørgen Holm; Toppari, Jorma; Jensen, Tina Kold; Brunak, Søren; Skakkebæk, Niels E.; Nellemann, Christine Lydia; Main, Katharina M.; Jégou, Bernard; Leffers, Henrik.

    In: Human Reproduction, Vol. 26, No. 1, 2011, p. 235-244.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  493. Published

    Introducing process analytical technology (PAT) in filamentous cultivation process development: comparison of advanced online sensors for biomass measurement. / Rønnest, Nanna Petersen; Stocks, Stuart M.; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Journal of Industrial Microbiology and Biotechnology, Vol. 38, No. 10, 2011, p. 1679-1690.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  494. Published

    Investing xylanase activities and inhibitors in barley grains. / Sultan, Abida; Marstand, M.; Svensson, Birte; Finnie, Christine.

    2011. Abstract from Plant Biotech Denmark : Annual meeting, Copenhagen, .

    Publication: Research › Conference abstract for conference – Annual report year: 2011

  495. Published

    In vitro cytotoxicity of fungi spoiling maize silage. / Rasmussen, Rie Romme; Rasmussen, Peter Have; Larsen, Thomas Ostenfeld; Bladt, Tanja Thorskov; Binderup, Mona-Lise.

    In: Food and Chemical Toxicology, Vol. 49, No. 1, 2011, p. 31-44.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  496. Published

    Jetset: selecting the optimal microarray probe set to represent a gene. / Li, Qiyuan; Birkbak, Nicolai Juul; Gyorffy, Balazs; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: B M C Bioinformatics, Vol. 12, No. 1, 2011, p. 474.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  497. Published

    Key Players in the Genetic Switch of Bacteriophage TP901-1. / Alsing, Anne; Pedersen, Margit; Sneppen, Kim; Hammer, Karin.

    In: Biophysical Journal, Vol. 100, No. 2, 2011, p. 313-321.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  498. Published

    Kinetically Controlled Drug Resistance : How Penicillium Brevicompactum Survives Mycophenolic Acid. / Sun, Xin E.; Hansen, Bjarne Gram; Hedstrom, Lizbeth.

    In: Journal of Biological Chemistry, Vol. 286, No. 47, 2011, p. 40595-40600.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  499. Published

    Linking Genotype and Phenotype of Saccharomyces cerevisiae Strains Reveals Metabolic Engineering Targets and Leads to Triterpene Hyper-Producers. / Madsen, Karina Marie; Udatha, Gupta D. B. R. K.; Semba, Saori; Otero, Jose M.; Koetter, Peter; Nielsen, Jens; Ebizuka, Yutaka; Kushiro, Tetsuo; Panagiotou, Gianni.

    In: P L o S One, Vol. 6, No. 3, 2011, p. e14763.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  500. Published

    Machine learning competition in immunology – Prediction of HLA class I binding peptides. / Zhang, Guang Lan; Ansari, Hifzur Rahman; Bradley, Phil; Cawley, Gavin C.; Hertz, Tomer; Hu, Xihao; Jojic, Nebojsa; Kim, Yohan; Kohlbacher, Oliver; Lund, Ole; Lundegaard, Claus; Magaret, Craig A.; Nielsen, Morten; Papadopoulos, Harris; Raghava, G.P.S.; Tal, Vider-Shalit; Xue, Li C.; Yanover, Chen; Zhu, Shanfeng; Rock, Michael T.; Crowe, James E.; Panayiotou, Christos; Polycarpou, Marios M.; Duch, Włodzisław; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 374, No. 1-2, 2011, p. 1-4.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  501. Published

    Many Putative Endocrine Disruptors Inhibit Prostaglandin Synthesis. / Kristensen, David M.; Skalkam, Maria L.; Audouze, Karine Marie Laure; Lesné, Laurianne; Desdoits-Lethimonier, Christele; Frederiksen, Hanne; Brunak, Søren; Skakkebæk, Niels E.; Jégou, Bernard; Hansen, Jacob B.; Junker, Steffen; Leffers, Henrik.

    In: Environmental Health Perspectives, Vol. 119, No. 4, 2011, p. 534-541.

    Publication: Research - peer-review › Journal article – Annual report year: 2010

  502. Published

    Mapping of polyketide biosynthesis pathways in Aspergillus nidulans using a genome wide PKS gene deletion library. / Larsen, Thomas Ostenfeld; Rank, Christian; Klejnstrup, Marie Louise; Nielsen, Jakob Blæsbjerg; Holm, Dorte Koefoed; Brogaard, Katrine Husted; Hansen, Bjarne Gram; Frisvad, Jens Christian; Mortensen, Uffe Hasbro.

    2011. Abstract from 26th Fungal Genetics Conference, Asilomar, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

  503. Published

    Marine Vibrionaceae as a source of bioactive natural products. / Månsson, Maria; Wietz, Matthias; Gram, Lone; Larsen, Thomas Ostenfeld.

    2011. Abstract from The 7th European Conference on Marine Natural Products, Strömstad, Sweden, .

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2011

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