Department of Systems Biology

  1. 2015
  2. E-pub ahead of print
  3. E-pub ahead of print

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways.. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Accepted/In press

    Acylcarnitine plasma levels suggest incomplete mitochondrial fatty acid oxidation in young, healthy men with low birth weight. / Ribel-Madsen, Amalie; Ribel-Madsen, Rasmus; Brøns, Charlotte; B. Newgard, Christopher; Vaag, Allan; Hellgren, Lars.

    2015. Abstract from 28th Nordic Lipid Symposium, Reykjavik, Iceland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  5. Published
  6. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 1, 2015, p. 194.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Amino acid and glucose metabolism in fed-batch CHO cell culture affects antibody production and glycosylation. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering, Vol. 112, No. 3, 2015, p. 521-535.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Published
  10. Published

    A novel approach for studying programmed cell death in living plant tissues. / Mark, Christina; Dufva, Martin (Supervisor); Finnie, Christine (Supervisor).

    Kgs. Lyngby : Technical University of Denmark (DTU), 2015. 140 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  11. Published

    A novel common variant in DCST2 is associated with length in early life and height in adulthood. / van der Valk, Ralf J.P.; Kreiner-Møller, Eskil; Kooijman, Marjolein N.; Guxens, Mònica; Stergiakouli, Evangelia; Sääf, Annika; Bradfield, Jonathan P.; Geller, Frank; Hayes, M. Geoffrey; Cousminer, Diana L.; Bisgaard, Hans; Chawes, Bo; Stokholm, Jakob; Waage, Johannes; Eriksen, Patrick; Sevelsted, Astrid; Melbye, Mads; Feenstra, Bjarke; Pers, Tune Hannes; Bønnelykke, Klaus.

    In: Human Molecular Genetics, Vol. 24, No. 4, 2015, p. 1155-1168.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. E-pub ahead of print

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D’Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Søren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  13. Published

    Archival Bone Marrow Samples: Suitable for Multiple Biomarker Analysis?. / Lund, Bendik; Najmi, A. Laeya; Wesolowska, Agata; Landsem, Veslemoy M.; Rasmussen, Kirsten K.; Borst, Louise; Gupta, Ramneek; Schmiegelow, Kjeld; Klungland, Helge.

    In: Applied Immunohistochemistry & Molecular Morphology, Vol. 23, No. 1, 2015, p. 71-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published
  15. Published
  16. Published
  17. Published

    Aspiperidine oxide, a piperidine N-oxide from the filamentous fungus Aspergillus indologenus. / Petersen, Lene Maj; Kildgaard, Sara; Jaspars, Marcel; Larsen, Thomas Ostenfeld.

    In: Tetrahedron Letters, Vol. 56, No. 14, 2015, p. 1847-1850.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  18. Published

    A taxonomic revision of the Wallemia sebi species complex. / Jančič, Sašo; Nguyen, Hai D. T.; Frisvad, Jens Christian; Zalar, Polona; Schroers, Hans-Josef; Seifert, Keith A.; Gunde-Cimerman, Nina.

    In: P L o S One, Vol. 10, No. 5, e0125933, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides. / Oehlenschlæger, Christian Berg; Løvgreen, Monika Nøhr; Reinauer, Eva; Lehtinen, Emilia; Pind, Marie-Louise Lindberg; Harris, Pernille; Martinussen, Jan; Willemoës, Martin.

    In: Applied and Environmental Microbiology, Vol. 81, No. 10, 2015, p. 3395-3404.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  22. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. Published

    Characterization of Alternaria strains from Argentinean blueberry, tomato, walnut and wheat. / Andersen, Birgitte; Nielsen, Kristian Fog; Fernández Pinto, Virginia; Patriarca, Andrea.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 1-10.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published
  25. Published
  26. Published
  27. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published
  29. E-pub ahead of print
  30. Published

    Complementing DIGE proteomics and DNA subarray analyses to shed light on Oenococcus oeni adaptation to ethanol in wine-simulated conditions. / Costantini, Antonella; Rantsiou, Kalliopi; Majumder, Avishek; Jacobsen, Susanne; Pessione, Enrica; Svensson, Birte; Garcia-Moruno, Emilia; Cocolin, Luca.

    In: Journal of Proteomics, Vol. 123, 2015, p. 114-127.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  31. Published

    Complete Genome Sequence of the Persistent Listeria monocytogenes Strain R479a. / Schmitz-Esser, Stephan; Gram, Lone; Wagner, Martin.

    In: Genome Announcements, Vol. 3, No. 2, e00150-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published
  33. Published
  34. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  35. Published

    Current state of genome-scale modeling in filamentous fungi. / Brandl, Julian; Andersen, Mikael Rørdam.

    In: Biotechnology Letters, Vol. 37, No. 6, 2015, p. 1131-1139.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  36. E-pub ahead of print

    Deep sequencing reveals different compositions of mRNA transcribed from the F8 gene in a panel of FVIII-producing CHO cell lines. / Kaas, Christian Schrøder; Bolt, Gert; Hansen, Jens J; Andersen, Mikael Rørdam; Kristensen, Claus.

    In: Biotechnology Journal, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  37. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  38. Published

    Dereplication-guided isolation of depsides thielavins S-T and lecanorins D-F from the endophytic fungus Setophoma sp.. / de Medeiros, Livia S.; Abreu, Lucas M.; Nielsen, Anita; Ingmer, Hanne; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Rodrigues-Filho, Edson.

    In: Phytochemistry, Vol. 111, 2015, p. 154-162.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  39. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published

    Development of a real-time PCR method coupled with a selective pre-enrichment step for quantification of Morganella morganii and Morganella psychrotolerans in fish products. / Podeur, Gaetan; Dalgaard, Paw; Leroi, Francoise; Prevost, Herve; Emborg, Jette; Martinussen, Jan; Hansen, Lars Hestbjerg; Filet, Marie-France.

    In: International Journal of Food Microbiology, Vol. 203, 2015, p. 55-62.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published
  42. Published
  43. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  44. Published

    Dynamic single-cell analysis of Saccharomyces cerevisiae under process perturbation: Comparison of different methods for monitoring the intensity of population heterogeneity. / Delvigne, Frank; Baert, Jonathan; Gofflot, Sébastien; Lejeune, Annick; Telek, Samuel; Johanson, Ted; Eliasson Lantz, Anna.

    In: Journal of Chemical Technology and Biotechnology, Vol. 90, No. 2, 2015, p. 314–323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  45. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Society of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: ResearchPoster – Annual report year: 2015

  46. Published

    Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. / Jensen, Niels F.; Stenvang, Jan; Beck, Mette Kristina; Hanáková, Barbora; Belling, Kirstine C.; Nguyen Do, Khoa; Viuff, Birgitte; Nygård, Sune B.; Gupta, Ramneek; Rasmussen, Mads H.; Tarpgaard, Line S.; Hansen, Tine P.; Budinská, Eva; Pfeiffer, Per; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Delorenzi, Mauro; Andersen, Claus L.; Rømer, Maria U.; Brünner, Nils; Moreira, José M.A.

    In: Molecular Oncology, Vol. 9, No. 6, 2015, p. 1169-1185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  47. Published

    Evidence of interactions between aroma compounds and the CB1 receptor opens new routes for regulation of food intake. / Le Bon, Anne-Marie; Audouze, Karine Marie Laure; Taboureau, Olivier ; Burton, Kathryn; Belloir, Christine; Desmetz, Catherine; Brunak, Søren; Guichard, Elisabeth; Tromelin, Anne.

    In: Chemical Senses, Vol. 40, No. 3, 2015, p. 280-280.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  48. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published

    Expanding the species and chemical diversity of Penicillium section Cinnamopurpurea. / Peterson, Stephen W.; Jurjević, Željko; Frisvad, Jens Christian.

    In: P L o S One, Vol. 10, No. 4, e0121987, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  50. Published
  51. E-pub ahead of print
  52. Published

    Expression profiling and functional analyses of BghPTR2, a peptide transporter from Blumeria graminis f. sp. hordei. / Droce, Aida; Holm, Kirsten B.; Olsson, Stefan; Frandsen, Rasmus John Normand; Sondergaard, Teis Esben; Sørensen, Jens Laurids; Giese, Henriette.

    In: Fungal Biology, Vol. 119, No. 7, 2015, p. 551-559.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  53. Published

    Extended spectrum beta-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment. / Kjeldsen, Thea S. B.; Sommer, Morten Otto Alexander; Olsen, John E.

    In: B M C Microbiology, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  54. Accepted/In press

    FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses. / Simon, Christian; Kudahl, Ulrich Johan; Sun, Jing; Olsen, Lars Rønn; Zhang, Guang Lan; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunology Research, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  55. Published

    Gene expression analysis identifies global gene dosage sensitivity in cancer. / Fehrmann, Rudolf S. N.; Karjalainen, Juha M.; Krajewska, Malgorzata; Westra, Harm-Jan; Maloney, David; Simeonov, Anton; Pers, Tune Hannes; Hirschhorn, Joel N.; Jansen, Ritsert C.; Schultes, Erik A.; van Haagenl, Herman H. H. B. M.; de Vries, Elisabeth G. E.; Meerman, Gerard J. te; Wijmenga, Cisca; van Vugt, Marcel A. T. M.; Franke, Lude.

    In: Nature Genetics, Vol. 47, No. 2, 2015, p. 115-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  56. Published

    Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria. / Machado, Henrique; Sonnenschein, Eva; Melchiorsen, Jette; Gram, Lone.

    In: B M C Genomics, Vol. 16, 158, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  57. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  58. Published

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, Vol. 29, 2015, p. 297-303.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  59. Published

    Genomics and ecophysiology of heterotrophic nitrogen fixing bacteria isolated from estuarine surface water. / Bentzon-Tilia, Mikkel; Severin, Ina; Hansen, Lars H.; Riemann, Lasse.

    In: mBio (Print), Vol. 6, No. 4, e00929-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  60. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  61. Published
  62. Published
  63. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL6 mice fed a high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2015. Abstract from Keystone Symposia - Gut Microbiota Modulation of Host Physiology: The Search for Mechanism, Keystone, Colorado, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  64. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome. / Favero, Francesco; McGranahan, N.; Salm, M.; Birkbak, Nicolai Juul; Sanborn, J. Z.; Benz, S. C.; Becq, J.; Peden, J. F.; Kingsbury, Z.; Grocok, R. J.; Eklund, Aron Charles; Szallasi, Zoltan Imre.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  65. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macroevolution of a double minute chromosome.. / Favero, Francesco; McGranahan, Nicholas; Salm, Maximilian P.; Birkbak, Nicolai Juul; Sanborn, J. Zachary ; Benz, Stephen C. ; Becq, Jennifer; Peden, John F. ; Kingsbury, Zoya ; Grocok, Russell J. ; Eklund, Aron Charles.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  66. Published

    Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling. / Basse, Astrid L.; Dixen, Karen; Yadav, Rachita; Tygesen, Malin P.; Qvortrup, Klaus; Kristiansen, Karsten; Quistorff, Bjorn; Gupta, Ramneek; Wang, Jun; Hansen, Jacob B.

    In: B M C Genomics, Vol. 16, No. 215, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  67. Published

    Hand eczema and stratum corneum ceramides. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Wilkinson, S.; Jemec, G. B. E.; Agner, T.

    In: Clinical and Experimental Dermatology, Vol. 40, No. 3, 2015, p. 243-246.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  68. Published

    Heterologous production of fungal secondary metabolites in Aspergilli. / Anyaogu, Diana Chinyere; Mortensen, Uffe Hasbro.

    In: Frontiers in Microbiology, Vol. 6, 77, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  69. Published

    Aspergillus nidulans as a platform for discovery and characterization of complex biosynthetic pathways. / Anyaogu, Diana Chinyere; Mortensen, Uffe Hasbro (Main supervisor); Workman, Mhairi (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 96 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  70. Published

    Identification of novel immune and barrier genes in atopic dermatitis by means of laser capture microdissection. / Esaki, Hitokazu; Ewald, David Adrian; Ungar, Benjamin; Rozenblit, Mariya; Zheng, Xiuzhong; Xu, Hui; Estrada, Yeriel D.; Peng, Xiangyu; Mitsui, Hiroshi; Litman, Thomas; Suarez-Farinas, Mayte; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  71. Published

    Identification of possible adverse drug reactions in clinical notes : The case of glucose-lowering medicines. / Warrer, Pernille; Jensen, Peter Bjødstrup; Aagaard, Lise; Jensen, Lars Juhl; Brunak, Søren; Krag, Malene Hammer; Rossing, Peter; Almdal, Thomas; Andersen, Henrik Ullits; Hansen, Ebba Holme.

    In: Journal of Research in Pharmacy Practice, Vol. 4, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  72. Published
  73. Published

    Individualization of treatments with drugs metabolized by CES1 : combining genetics and metabolomics. / Rasmussen, Henrik B.; Bjerre, Ditte; Linnet, Kristian; Juergens, Gesche; Dalhoff, Kim; Stefansson, Hreinn; Hankemeier, Thomas; Kaddurah-Daouk, Rima; Taboureau, Olivier ; Brunak, Søren; Houmann, Tine; Jeppesen, Pia; Pagsberg, Anne Katrine; Plessen, Kerstin; Dyrborg, Jorgen; Hansen, Peter R.; Hansen, Poul Erik; Hughes, Tim; Werge, Thomas.

    In: Pharmacogenomics, Vol. 16, No. 6, 2015, p. 649-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  74. Published

    Insights from 20 years of bacterial genome sequencing. / Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole; Kora, Guruprased; Wassenaar, Trudy; Poudel, Suresh; Ussery, David.

    In: Functional & Integrative Genomics, Vol. 15, No. 2, 2015, p. 141-161.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  75. Published

    Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. / So, Jonathan; Pasculescu, Adrian; Dai, Anna Y.; Williton, Kelly; James, Andrew; Nguyen, Vivian; Creixell, Pau; Schoof, Erwin M.; Sinclair, John; Barrios-Rodiles, Miriam; Gu, Jun; Krizus, Aldis; Williams, Ryan; Olhovsky, Marina; Dennis, James W.; Wrana, Jeffrey L.; Linding, Rune; Jørgensen, Claus; Pawson, Tony; Colwill, Karen.

    In: Science Signaling, Vol. 8, No. 371, rs3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  76. Published

    Isolation of Notoamide S and Enantiomeric 6-epi-Stephacidin A from the Fungus Aspergillus amoenus: Biogenetic Implications. / Kato, Hikaru; Nakahara, Takashi; Sugimoto, Kayo; Matsuo, Kanae; Kagiyama, Ippei; Frisvad, Jens Christian; Sherman, David H.; Williams, Robert M.; Tsukamoto, Sachiko.

    In: Organic Letters, Vol. 17, No. 3, 2015, p. 700-703.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  77. Published

    Lactococcus lactis Thioredoxin Reductase Is Sensitive to Light Inactivation. / Björnberg, Olof; Viennet, Thibault; Skjoldager, Nicklas; Curovic, Aida; Nielsen, Kristian Fog; Svensson, Birte; Hagglund, P.

    In: Biochemistry, Vol. 54, No. 8, 2015, p. 1628-1637.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  78. Published
  79. Published

    Limited similarity between plasmids encoding CTX-M-1 β-lactamase in Escherichia coli from humans, pigs, cattle, organic poultry layers and horses in Denmark. / Jakobsen, Lotte; Bortolaia, Valeria; Bielak, Eliza Maria; Moodley, Arshnee; Olsen, Stefan S.; Hansen, Dennis S.; Frimodt-Møller, Niels; Guardabassi, Luca; Hasman, Henrik.

    In: Journal of Global Antimicrobial Resistance, Vol. 3, No. 2, 2015, p. 132-136.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  80. E-pub ahead of print
  81. Published

    LYRA, a webserver for lymphocyte receptor structural modeling.. / Schantz Klausen, Michael; Anderson, Mads Valdemar; Jespersen, Martin Closter; Nielsen, Morten; Marcatili, Paolo.

    In: Nucleic Acids Research, Vol. 43, No. W1, 2015, p. W349-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  82. Published

    Mendelian Randomization Study of Body Mass Index and Colorectal Cancer Risk. / Thrift, Aaron P.; Gong, Jian; Peters, Ulrike; Chang-Claude, Jenny; Rudolph, Anja; Slattery, Martha L.; Chan, Andrew T.; Locke, Adam E.; Kahali, Bratati; Justice, Anne E.; Pers, Tune Hannes.

    In: Cancer Epidemiology, Biomarkers & Prevention, Vol. 24, No. 7, 2015, p. 1024-1031.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  83. Published

    Metabolomets ioniske komponenter bestemt ved kromatografi og massespektrometri. / Magdenoska, Olivera; Svenssen, Daniel Killerup; Knudsen, Peter Boldsen; Thorhallsdottir, Andrea; Workman, Mhairi; Nielsen, Kristian Fog.

    In: Dansk Kemi, Vol. 96, No. 5, 2015, p. 8-12.

    Publication: CommunicationJournal article – Annual report year: 2015

  84. Published
  85. Published

    Metagenomic heterogeneity explains dual immune effects of endotoxins. / Pedersen, Susanne Brix; Eriksen, Carsten; Larsen, Jeppe Madura; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 277-280.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  86. Published

    Methods for modeling chinese hamster ovary (cho) cell metabolism.. / Herrgard, Markus (Inventor); Pedersen, Lasse Ebdrup (Inventor); Lewis, Nathan S. (Inventor); Bruntse, Anders Bech (Inventor).

    IPC No.: C12N5/07. Patent No.: WO2015010088. Jul 19, 2013.

    Publication: ResearchPatent – Annual report year: 2015

  87. Published

    Microbial Biofilm as a Smart Material. / Garde, Christian; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Sensors, Vol. 15, No. 2, 2015, p. 4229-4241.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  88. Published

    miR-18b overexpression identifies mantle cell lymphoma patients with poor outcome and improves the MIPI-B prognosticator. / Husby, Simon; Ralfkiær, Ulrik Methner; Garde, Christian; Zandi, Roza; Ek, Sara; Kolstad, Arne; Jerkeman, Mats; Laurell, Anna; Räty, Riikka; Pedersen, Lone B.; Pedersen, Anja; Ehinger, Mats; Sundström, Christer; Karjalainen-Lindsberg, Marja-Liisa; Delabie, Jan; Clasen-Linde, Erik; Brown, Peter; Cowland, Jack B.; Workman, Christopher; Geisler, Christian H.; Grønbæk, Kirsten.

    In: Blood, Vol. 125, No. 17, 2015, p. 2669-2677.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  89. Published

    Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition. / Beatson, Scott A.; Ben Zakour, Nouri L.; Totsika, Makrina; Forde, Brian M.; Watts, Rebecca E.; Mabbett, Amanda N.; Szubert, Jan M.; Sarkar, Sohinee; Phan, Minh-Duy; Peters, Kate M.; Petty, Nicola K.; Alikhan, Nabil-Fareed; Sullivan, Mitchell J.; Gawthorne, Jayde A.; Stanton-Cook, Mitchell; Nhu, Nguyen Thi Khanh; Chong, Teik Min; Yin, Wai-Fong; Chan, Kok-Gan; Hancock, Viktoria ; Ussery, David W.; Ulett, Glen C.; Schembri, Mark A.

    In: Infection and Immunity, Vol. 83, No. 5, 2015, p. 1749-1764.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  90. Published

    Monitoring and control of protein production in fungi. / Schalén, Martin; Workman, Mhairi (Main supervisor); Nielsen, Jakob Blæsbjerg (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2015. 124 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  91. Published

    Multilocus Heterozygosity and Coronary Heart Disease: Nested Case-Control Studies in Men and Women. / Mukamal, Kenneth J.; Jensen, Majken K.; Pers, Tune Hannes; Pai, Jennifer K.; Kraft, Peter; Rimm, Eric B.

    In: PLOS ONE, Vol. 10, No. 5, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  92. Accepted/In press
  93. Published

    Multi-omic profiling of EPO-producing CHO cell panel reveals metabolic adaptation to heterologous protein production. / Ley, Daniel; Kazemi Seresht, Ali; Engmark, Mikael; Magdenoska, Olivera; Nielsen, Kristian Fog; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2015. Poster session presented at 24th ESACT meeting, Barcelona, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  94. Published

    Multiple nucleophilic elbows leading to multiple active sites in a single module esterase from Sorangium cellulosum. / Udatha, D.B.R.K. Gupta; Madsen, Karina Marie; Panagiotou, Gianni; Olsson, Lisbeth.

    In: Journal of Structural Biology, Vol. 190, No. 3, 2015, p. 314-327.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  95. Published

    Name Changes in Medically Important Fungi and Their Implications for Clinical Practice. / de Hoog, G. Sybren; Chaturvedi, Vishnu; Denning, David W.; Dyer, Paul S.; Frisvad, Jens Christian; Geiser, David; Gräser, Yvonne; Guarro, Josep; Haase, Gerhard; Kwon-Chung, Kyung-Joo; Meis, Jacques F.; Meyer, Wieland; Pitt, John I.; Samson, Robert A.; Taylor, John W.; Tintelnot, Kathrin; Vitale, Roxana G.; Walsh, Thomas J.; Lackner, Michaela.

    In: Journal of Clinical Microbiology, Vol. 53, No. 4, 2015, p. 1056-1062.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  96. Published

    Neonates with reduced neonatal lung function have systemic low-grade inflammation. / Chawes, Bo L.K.; Stokholm, Jakob; Bønnelykke, Klaus; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 6, 2015, p. 1450-1456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  97. Published

    N-Glycosylation optimization of recombinant antibodies in CHO cell through process and metabolic engineering. / Fan, Yuzhou; Andersen, Mikael Rørdam (Supervisor); Weilguny, Dietmar (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 158 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  98. E-pub ahead of print

    Nitrogenase expression in estuarine bacterioplankton influenced by organic carbon and availability of oxygen. / Severin, Ina; Bentzon-Tilia, Mikkel; Moisander, Pia H.; Riemann, Lasse.

    In: F E M S Microbiology Letters, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  99. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Gonzalez-Izarzugaza, Jose Maria; Grove, Jakob; Belling, Kirstine C.; Bork-Jensen, Jette; Huang, Shujia; Dam-Als, Thomas; Li, Shengting; Yadav, Rachita; Yadav, Rachita; Rubio García, Arcadio; Lescai, Francesco; Demontis, Ditte ; Rao, Junhua ; Ye, Weijian ; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Wang, Ou ; Cheng, Xiaofang ; Flores Santa Cruz, David; Rydza, Emil Karol; Rapacki, Kristoffer; Sørensen, John Damm; Chmura, Piotr Jaroslaw; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I. A.; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D.; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Jun, Wang; Gupta, Ramneek; Villesen, Palle ; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  100. Published

    Obesity-associated fecal microbiota from human modulates body mass and metabolites in mice. / Zhang, Li; Bahl, Martin Iain; Hellgren, Lars; Roager, Henrik Munch; Fonvig, Cilius Esmann; Holm, Jens-Christian ; Hansen, Torben; Pedersen, Oluf; Licht, Tine Rask.

    2015. Abstract from EMBL Conference 2015, Heidelberg, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  101. Published

    Oligosaccharide and Substrate Binding in the Starch Debranching Enzyme Barley Limit Dextrinase. / Møller, Marie Sofie; Windahl, Michael Skovbo; Sim, Lyann; Bøjstrup, Marie; Abou Hachem, Maher ; Hindsgaul, Ole; Palcic, Monica; Svensson, Birte; Henriksen, Anette.

    In: Journal of Molecular Biology, Vol. 427, No. 6, 2015, p. 1263-1277.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  102. E-pub ahead of print
  103. Published

    Optimering af vandforsyningens moniteringsstrategi ved hjælp af GIS-analyse. / Albrechtsen, Hans-Jørgen (Author); Christensen, Sarah Christine Boesgaard (Author); Grønkjær, Thomas (Author); Kirstein, Jonas (Author); Larsen, Sille Lyster (Author); Rygaard, Martin (Author).

    2015. Dansk Vand Konference 2014, Århus, Denmark, 18/11/2014.

    Publication: ResearchSound/Visual production (digital) – Annual report year: 2015

  104. Published

    P0525 : N-Acetylated alpha smooth muscle actin levels are increased in hepatic fibrosis but decreased in hepatocellular carcinoma. / Nielsen, M.J.; Nielsen, S.H.; Hansen, N.U.B.; Kristensen, Jacob Hull; Karsdal, M.A.; Leeming, D. J.

    In: Journal of Hepatology, Vol. 62, P0525, 2015, p. S512.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  105. Published

    Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets. / Ali, Amjad; Naz, Anam; Soares, Siomar C.; Bakhtiar, Marriam; Tiwari, Sandeep; Hassan, Syed S.; Hanan, Fazal; Ramos, Rommel; Pereira, Ulisses; Barh, Debmalya; Pereira Figueiredo, Henrique Cesar; Ussery, David; Miyoshi, Anderson; Silva, Artur; Azevedo, Vasco.

    In: Journal of Biomedicine and Biotechnology, Vol. 2015, 139580, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  106. Published

    Penicillium salamii, a new species occurring during seasoning of dry-cured meat. / Perrone, Giancarlo; Samson, Robert A.; Frisvad, Jens Christian; Susca, Antonia; Gunde-Cimerman, Nina; Epifani, Filomena; Houbraken, Jos.

    In: International Journal of Food Microbiology, Vol. 193, 2015, p. 91-98.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  107. Published

    Peptaibol, Secondary‐Metabolite, and Hydrophobin Pattern of Commercial Biocontrol Agents Formulated with Species of the Trichoderma harzianum Complex. / Degenkolb, Thomas; Nielsen, Kristian Fog; Dieckmann, Ralf; Branco‐Rocha, Fabiano; Chaverri, Priscila; Samuels, Gary J.; Thrane, Ulf; von Döhren, Hans; Vilcinskas, Andreas; Brückner, Hans.

    In: Chemistry & Biodiversity, Vol. 12, No. 4, 2015, p. 662-684.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  108. Published

    Physiological and proteome studies of responses to heat stress during grain filling in contrasting wheat cultivars. / Wang, Xiao; Dinler, Burcu Seckin; Vignjevic, Marija; Jacobsen, Susanne; Wollenweber, Bernd .

    In: Plant Science, Vol. 230, 2015, p. 33-50.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  109. Published
  110. E-pub ahead of print

    Production of cellulolytic enzymes from ascomycetes: Comparison of solid state and submerged fermentation. / Hansen, Gustav Hammerich; Lübeck, Mette; Frisvad, Jens Christian; Lübeck, Peter S.; Andersen, Birgitte.

    In: Process Biochemistry, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  111. Published

    Proteomics in Cell Culture: From Genomics to Combined ‘Omics for Cell Line Engineering and Bioprocess Development. / Heffner, Kelley; Kaas, Christian Schrøder; Kumar, Amit; Baycin-Hizal, Deniz; Betenbaugh, Michael.

    Animal Cell Culture. Vol. 9 2015. p. 591-614 (Cell Engineering).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2015

  112. Published
  113. Published

    Reconstitution of Biosynthetic Machinery for the Synthesis of the Highly Elaborated Indole Diterpene Penitrem. / Liu, Chengwei; Tagami, Koichi; Minami, Atsushi; Matsumoto, Tomoyuki; Frisvad, Jens Christian; Suzuki, Hideyuki; Ishikawa, Jun; Gomi, Katsuya; Oikawa, Hideaki.

    In: Angewandte Chemie International Edition, Vol. 54, No. 19, 2015, p. 5748-5752.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  114. Published

    Reduced ex vivo stimulated IL-6 response in infants randomized to fish oil from 9 to 18 months, especially among PPARG2 and COX2 wild types. / Harslof, Laurine B. S.; Damsgaard, Camilla T.; Andersen, Anders D.; Aakjaer, Ditte L.; Michaelsen, Kim F.; Hellgren, Lars I.; Frøkiær, Hanne; Vogel, Ulla; Lauritzen, Lotte.

    In: Prostaglandins, Leukotrienes & Essential Fatty Acids, Vol. 94, 2015, p. 21-27.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  115. Published

    Relationship of postoperative thrombocytosis and survival of patients with colorectal cancer. / Josa, Valeria; Krzystanek, Marcin; Eklund, Aron Charles; Salamon, Ferenc; Zarand, Attila; Szallasi, Zoltan Imre; Baranyai, Zsolt.

    In: International Journal of Surgery, Vol. 18, 2015, p. 1-6.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  116. Published

    Renal impairment and late toxicity in germ-cell cancer survivors.. / Lauritsen, J.; Mortensen, M. S.; Kier, M. G. G.; Christensen, I. J.; Agerbaek, M.; Gupta, Ramneek; Daugaard, G.

    In: Annals of Oncology, Vol. 26, No. 1, 2015, p. 173-178.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  117. Published
  118. Published

    RNA sequencing atopic dermatitis transcriptome profiling provides insights into novel disease mechanisms with potential therapeutic implications. / Suárez-Fariñas, Mayte; Ungar, Benjamin; Correa da Rosa, Joel; Ewald, David Adrian; Rozenblit, Mariya; Gonzalez, Juana; Xu, Hui; Zheng, Xiuzhong; Peng, Xiangyu; Estrada, Yeriel D.; Dillon, Stacey ; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 5, 2015, p. 1218-1227.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  119. Published

    Segregation of chromosome arms in growing and non-growing Escherichia coli cells. / Woldringh, Conrad L.; Hansen, Flemming G.; Vischer, Norbert O. E.; Atlung, Tove.

    In: Frontiers in Microbiology, Vol. 6, 448, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  120. Published

    Sequencing the CHO DXB11 genome reveals regional variations in genomic stability and haploidy. / Kaas, Christian Schrøder; Kristensen, Claus; Betenbaugh, Michael J.; Andersen, Mikael Rørdam.

    In: B M C Genomics, Vol. 16, No. 160, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  121. Published
  122. Published

    Serological assessment of neutrophil elastase activity on elastin during lung ECM remodeling. / Kristensen, Jacob Hull; Karsdal, Morten A.; Sand, Jannie M. B.; Willumsen, Nicholas; Diefenbach, Claudia; Svensson, Birte; Hägglund, Per; Oersnes-Leeming, Diana J.

    In: BMC Pulmonary Medicine, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  123. Published

    Snake venomics of monocled cobra (Naja kaouthia) and investigation of human IgG response against venom toxins. / Laustsen, Andreas Hougaard; Gutiérrez, José María; Lohse, Brian; Rasmussen, Arne R.; Fernández, Julián; Milbo, Christina; Lomonte, Bruno.

    In: Toxicon, Vol. 99, 2015, p. 23-35.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  124. Published

    SNPsnap: a Web-based tool for identification and annotation of matched SNPs. / Pers, Tune Hannes; Timshel, Pascal; Hirschhorn, Joel N.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 418-420.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  125. Published

    Somatic Cell Fusions Reveal Extensive Heterogeneity in Basal-like Breast Cancer. / Su, Ying; Subedee, Ashim; Bloushtain-Qimron, Noga; Savova, Virginia; Krzystanek, Marcin; Li, Lewyn; Marusyk, Andriy; Tabassum, Doris P.; Zak, Alexander; Szallasi, Zoltan Imre.

    In: Cell Reports, Vol. 11, No. 10, 2015, p. 1549-1563.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  126. Published

    Spatio-temporal appearance of α-amylase and limit dextrinase in barley aleurone layer in response to gibberellic acid, abscisic acid and salicylic acid.. / Shahpiri, Azar; Talaei, Nasim; Finnie, Christine.

    In: Journal of the Science of Food and Agriculture, Vol. 95, No. 1, 2015, p. 141-147.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  127. E-pub ahead of print

    Stepwise emergence of azole, echinocandin and amphotericin B multidrug resistance in vivo in Candida albicans orchestrated by multiple genetic alterations. / Jensen, Rasmus Hare; Thyssen Astvad, Karen Marie ; Vale Silva, Luis; Sanglard, Dominique; Jørgensen, Rene; Nielsen, Kristian Fog; Glintborg Mathiase, Estella; Doroudian, Ghazal; Perlin, David Scott ; Cavling Arendrup, Maiken.

    In: Journal of Antimicrobial Chemotherapy, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  128. Published

    Structural Conservation Despite Huge Sequence Diversity Allows EPCR Binding by the PfEMP1 Family Implicated in Severe Childhood Malaria. / Lau, Clinton K.Y.; Turner, Louise; Jespersen, Jakob S.; Lowe, Edward D. ; Petersen, Bent; Wang, Christian W.; Petersen, Jens E.V.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas; Higgins, Matthew K.

    In: Cell Host & Microbe, Vol. 17, 2015, p. 118-129.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  129. Published

    Structural insights into the inhibition of cellobiohydrolase Cel7A by xylo‐oligosaccharides. / Momeni, Majid Haddad; Ubhayasekera, Wimal; Sandgren, Mats; Ståhlberg, Jerry; Hansson, Henrik.

    In: F E B S Journal, Vol. 282, No. 11, 2015, p. 2167-2177.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  130. Published
  131. Published

    Tabhu: tools for antibody humanization.. / Olimpieri, Pier Paolo; Marcatili, Paolo; Tramontano, Anna.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 434-435.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  132. Published

    Taxonomy, chemodiversity, and chemoconsistency of Aspergillus, Penicillium, and Talaromyces species. / Frisvad, Jens Christian.

    In: Frontiers in Microbiology, Vol. 5, 773, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  133. Published
  134. Published

    The effect of a short-term high-fat overfeeding on plasma levels of acylcarnitines in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Ribel-Madsen, R.; Brøns, C.; Newgard, C. B.; Vaag, A.A.; Hellgren, Lars.

    2015. Abstract from The 51st Annual Meeting of the European Association for the Study of Diabetes (EASD 2015), Stockholm, Sweden.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  135. Published

    The fur Gene as a New Phylogenetic Marker for Vibrionaceae Species Identification. / Machado, Henrique; Gram, Lone.

    In: Applied and Environmental Microbiology, Vol. 81, No. 8, 2015, p. 2745-2752.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  136. Published

    The importance of mass spectrometric dereplication in fungal secondary metabolite analysis. / Nielsen, Kristian Fog; Larsen, Thomas Ostenfeld.

    In: Frontiers in Microbiology, Vol. 6, 71, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  137. Published

    The potential role of Alu Y in the development of resistance to SN38 (Irinotecan) or oxaliplatin in colorectal cancer. / Lin, Xue; Stenvang, Jan; Rasmussen, Mads Heilskov; Zhu, Shida; Jensen, Niels Frank; Tarpgaard, Line S.; Yang, Guangxia; Belling, Kirstine C.; Andersen, Claus Lindbjerg; Li, Jian; Bolund, Lars; Brunner, Nils.

    In: B M C Genomics, Vol. 16, No. 404, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  138. Published

    Towards High-throughput Immunomics for Infectious Diseases: Use of Next-generation Peptide Microarrays for Rapid Discovery and Mapping of Antigenic Determinants. / J. Carmona, Santiago; Nielsen, Morten; Schafer-Nielsen, Claus; Mucci, Juan; Altcheh, Jaime; Balouz, Virginia; Tekiel, Valeria; C. Frasch, Alberto; Campetella, Oscar; A. Buscaglia, Carlos; Agüero, Fernán.

    In: Molecular & Cellular Proteomics, Vol. 14, No. 7, 2015, p. 1871-1884.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  139. Published

    Toxigenic penicillia spoiling frozen chicken nuggets. / Wigmann, Evelin Francine; Saccomori, Fernanda; Bernardi, Angelica Olivier; Frisvad, Jens Christian; Copetti, Marina Venturini.

    In: Food Research International, Vol. 67, 2015, p. 219-222.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  140. Published

    Traces of ATCV-1 associated with laboratory component contamination. / Kjartansdóttir, Kristín Rós ; Friis-Nielsen, Jens; Asplund, Maria ; Mollerup, Sarah ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Raith Richter, Stine ; Alquezar-Planas, David E. ; Olsen, Pernille V. S. ; Vinner, Lasse ; Fridholm, Helena ; Sicheritz-Pontén, Thomas; Nielsen, Lars Peter; Brunak, Søren; Willerslev, Eske; Gonzalez-Izarzugaza, Jose Maria; Hansen, Anders Johannes .

    In: National Academy of Sciences. Proceedings, Vol. 112, No. 9, 2015, p. E925–E926.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  141. Published

    Transcriptome and genome size analysis of the venus flytrap. / Jensen, Michael Krogh; Vogt, Josef Korbinian; Bressendorff, Simon; Seguin-Orlando, Andaine; Petersen, Morten; Sicheritz-Pontén, Thomas; Mundy, John.

    In: P L o S One, Vol. 10, No. 4, e0123887, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  142. Published

    Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism. / Hao, Qin; Yadav, Rachita; Basse, Astrid L.; Petersen, Sidsel ; Sonne, Si B.; Rasmussen, Simon; Zhu, Qianhua; Lu, Zhike; Wang, Jun; Audouze, Karine Marie Laure; Gupta, Ramneek; Madsen, Lise; Kristiansen, Karsten; Hansen, Jacob B.

    In: American Journal of Physiology: Endocrinology and Metabolism, Vol. 308, No. 5, 2015, p. E380-E392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  143. Published

    Two Lactococcus lactis thioredoxin paralogues play different roles in responses to arsenate and oxidative stress. / Efler, Petr; Kilstrup, Mogens; Johnsen, Stig; Svensson, Birte; Hägglund, Per.

    In: Microbiology, Vol. 161, No. Pt 3, 2015, p. 528-538.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  144. Published
  145. Published

    Urea and thiourea modified polypropyleneimine dendrimers clear intracellular α-synuclein aggregates in a human cell line. / Laumann, Kristoffer; Boas, Ulrik; Larsen, Hjalte Martin; Heegaard, Peter M. H.; Bergström, Ann-Louise.

    In: Biomacromolecules, Vol. 16, No. 1, 2015, p. 116-124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  146. Published

    Whey-reduced weight gain is associated with a temporary growth reduction in young mice fed a high-fat diet. / Tranberg, Britt; Madsen, Andreas N.; Hansen, Axel K.; Hellgren, Lars.

    In: Journal of Nutritional Biochemistry, Vol. 26, No. 1, 2015, p. 9–15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  147. 2014
  148. Published
  149. Published
  150. Published
  151. Published
  152. Published

    Acute and perinatal-programming effects of a fat-rich diet on rat muscle mitochondrial function and hepatic lipid accumulation.. / Hellgren, Lars; Jensen, Runa I.; Waterstradt, Michelle S. G. ; Quistorff, Bjørn; Lauritzen, Lotte.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 93, 2014, p. 1170-1180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  153. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, Camilla P.; Berentzen, Tina L.; Østergaard, Jane N.; Dahm, Christina C.; Hellgren, Lars; Schmidt, Erik B.; Tjønneland, Anne; Sørensen, Thorkild I. A.; Overvad, Kim; Jakobsen, Marianne U.

    In: The British Journal of Nutrition, Vol. 111, No. 7, 2014, p. 1283-1291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  154. Published

    A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.. / Lindemose, Søren; Jensen, Michael Krogh; de Velde, Jan Van; O'Shea, Charlotte; Heyndrickx, Ken S.; Workman, Christopher; Vandepoele, Klaas; Skriver, Karen; De Masi, Federico.

    In: Nucleic Acids Research, Vol. 42, No. 12, 2014, p. 7681-7693.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  155. Published

    Adsorption and nanowear properties of bovine submaxillary mucin films on solid surfaces: Influence of solution pH and substrate hydrophobicity. / Sotres, Javier; Madsen, Jan Busk; Arnebrant, Thomas; Lee, Seunghwan.

    In: Journal of Colloid and Interface Science, Vol. 428, 2014, p. 242-250.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  156. Published

    Ageing of atrazine in manure amended soils assessed by bioavailability to Pseudomonas sp. strain ADP. / Glæsner, Nadia; Bælum, Jacob; Strobel, Bjarne W.; Jacobsen, Carsten S.

    In: Biodegradation, Vol. 25, No. 2, 2014, p. 217-225.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  157. Published

    A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy. / Bruhn, Sören; Fang, Yu; Barrenäs, Fredrik; Gustafsson, Mika; Zhang, Huan; Konstantinell, Aelita; Krönke, Andrea; Sönnichsen, Birte; Bresnick, Anne; Dulyaninova, Natalya; Wang, Hui; Zhao, Yelin; Klingelhöfer, Jörg; Ambartsumian, Noona; Beck, Mette Kristina; Nestor, Colm; Bona, Elsa; Xiang, Zou; Benson, Mikael.

    In: Science Translational Medicine, Vol. 6, No. 218, 2014, p. 20218ra4-218ra4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  158. Published

    A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.. / Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; den Dekker, Herman T; Husby, Anders; Sevelsted, Astrid; Faura-Tellez, Grissel; Mortensen, Li Juel; Paternoster, Lavinia; Flaaten, Richard; Mølgaard, Anne; Smart, David E; Thomsen, Philip Francis; Rasmussen, Morten; Bonàs-Guarch, Silvia; Holst, Claus; Nohr, Ellen A; Yadav, Rachita; March, Michael E; Blicher, Thomas Holberg; Lackie, Peter M; Jaddoe, Vincent W V; Simpson, Angela; Holloway, John W; Duijts, Liesbeth; Custovic, Adnan; Davies, Donna E; Torrents, David; Gupta, Ramneek; Hollegaard, Mads Vilhelm; Hougaard, David M; Hakonarson, Hakon; Bisgaard, Hans Flinker.

    In: Nature Genetics, Vol. 46, 2014, p. 51-55.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  159. Published
  160. Published

    A kinetic model of thiamine biosynthesis in Escherichia coli. / Matos, Marta; Herrgard, Markus; Andersen, Mikael Rørdam; Sonnenschein, Nikolaus.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  161. Published

    Analysis of pan-genome content and its application in microbial identification. / Lukjancenko, Oksana; Ussery, David (Main supervisor); Larsen, Mette Voldby (Supervisor).

    Technical University of Denmark, 2014. 177 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  162. Published

    Analysis of surface binding sites (SBSs) in carbohydrate active enzymes with focus on glycoside hydrolase families 13 and 77 : — a mini-review. / Cockburn, Darrell; Wilkens, Casper; Ruzanski, Christian; Andersen, Susan; Willum Nielsen, Jonas; Smith, Alison M.; Field, Robert A.; Willemoes, Martin; Abou Hachem, Maher ; Svensson, Birte.

    In: Biologia, Vol. 69, No. 6, 2014, p. 705-712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  163. Published
  164. Published

    An elevated pro-inflammatory cytokine profile in multiple chemical sensitivity. / Dantoft, Thomas Meinertz; Elberling, J.; Pedersen, Susanne Brix; Szecsi, P.B.; Vesterhauge, S.; Skovbjerg, S.

    In: Psychoneuroendocrinology, Vol. 40, 2014, p. 140-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  165. Published

    An integrated catalog of reference genes in the human gut microbiome. / Li, Junhua; Jia, Huijue; Cai, Xianghang; Zhong, Huanzi; Feng, Qiang; Sunagawa, Shinichi; Arumugam, Manimozhiyan; Kultima, Jens Roat; Prifti, Edi; Nielsen, Trine; Juncker, Agnieszka; Nielsen, Henrik Bjørn; Brunak, Søren.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 834-841.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  166. Published
  167. Published

    An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. / Brownstein, Catherine A ; Beggs, Alan H ; Homer, Nils ; Merriman, Barry ; Yu, Timothy W; Flannery, Katherine C ; DeChene, Elizabeth T ; Towne, Meghan C ; Savage, Sarah K ; Price, Emily N ; Dworzynski, Piotr.

    In: Genome Biology (Online Edition), Vol. 15, R53, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  168. Published

    Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. / Lundby, Alicia; Rossin, Elizabeth J.; Steffensen, Annette B.; Acha, Moshe Ray; Newton-Cheh, Christopher; Pfeufer, Arne; Lyneh, Stacey N.; Olesen, Søren-Peter; Brunak, Søren; Ellinor, Patrick T.; Jukema, J. Wouter; Trompet, Stella; Ford, Ian; Macfarlane, Peter W.; Krijthe, Bouwe P.; Hofman, Albert; Uitterlinden, Andre G.; Stricker, Bruno H.; Nathoe, Hendrik M.; Spiering, Wilko; Daly, Mark J.; Asselbergs, Folkert W.; van der Harst, Pim; Milan, David J.; de Bakker, Paul I. W.; Lage, Kasper; Olsen, Jesper V.

    In: Nature Methods, Vol. 11, No. 8, 2014, p. 868-874.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  169. Published
  170. Published

    A novel platform for heterologous gene expression in Trichoderma reesei (Teleomorph Hypocrea jecorina). / Jørgensen, Mikael Skaanning; Skovlund, Dominique Aubert; Johannesen, Pia Francke; Mortensen, Uffe Hasbro.

    In: Microbial Cell Factories, Vol. 13, No. 1, 2014, p. 33.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  171. Published

    Antibiofilm Properties of Acetic Acid. / Bjarnsholt, Thomas; Alhede, Morten; Jensen, Peter Østrup; Nielsen, Anne K.; Johansen, Helle Krogh; Homøe, Preben; Høiby, Niels; Givskov, Michael Christian; Kirketerp-Møller, Klaus.

    In: Advances in Wound Care, Vol. 4, No. 7, 2014, p. 363-372.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  172. Published

    Antibiotic Resistance : Adaptive Evolution & Dissemination of Resistance Genes. / Munck, Christian; Sommer, Morten (Main supervisor).

    Department of Systems Biology, DTU, 2014. 129 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  173. Published

    Antibody informatics for drug discovery. / Shirai, Hiroki; Prades, Catherine; Vita, Randi; Marcatili, Paolo; Popovic, Bojana; Xu, Jianqing; Overington, John P.; Hirayama, Kazunori; Soga, Shinji; Tsunoyama, Kazuhisa; Clark, Dominic; Lefranc, Marie-Paule; Ikeda, Kazuyoshi.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 11, 2014, p. 2002-2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  174. Published

    Antibody structural modeling with prediction of immunoglobulin structure (PIGS).. / Marcatili, Paolo; Olimpieri, Pier Paolo; Chailyan, Anna; Tramontano, Anna.

    In: Nature Protocols, Vol. 9, No. 12, 2014, p. 2771-2783.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  175. Published

    A pan-cancer analysis of inferred homologous recombination deficiency identifies potential platinum benefit in novel subtypes. / Marquard, Andrea Marion; Eklund, Aron Charles; Wang, Zhigang C.; Richardson, Andrea L.; Szallasi, Zoltan Imre; Birkbak, Nicolai Juul.

    In: Cancer Research, Vol. 74, No. 19 - Supplement, 2822, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  176. Published
  177. Published
  178. Published

    A random set scoring model for prioritization of disease candidate genes using protein complexes and data-mining of GeneRIF, OMIM and PubMed records.. / Jiang, Li; Edwards, Stefan M.; Thomsen, Bo; Workman, Christopher; Guldbrandtsen, Bernt; Sørensen, Peter.

    In: BMC Bioinformatics, Vol. 15, No. 315, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  179. Published

    A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. / Clemente, Florian J. ; Cardona, Alexia; Inchley, Charlotte E. ; Peter, Benjamin M. ; Jacobs, Guy; Pagani, Luca ; Lawson, Daniel J. ; Antão, Tiago ; Vicente, Mário ; Mitt, Mario ; Rasmussen, Simon.

    In: American Journal of Human Genetics, Vol. 95, No. 5, 2014, p. 584–589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  180. Published

    Aspergillus pragensis sp nov discovered during molecular reidentification of clinical isolates belonging to Aspergillus section Candidi. / Lyskova, Pavlina; Hubka, Vit; Kolarik, Miroslav; Skorepova, Magdalena; Peterson, Stephen W.; Frisvad, Jens Christian.

    In: Medical Mycology, Vol. 52, No. 6, 2014, p. 565-576.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  181. Published

    Assessment of aflatoxigenicAspergillusand other fungi in millet and sesame from Plateau State, Nigeria. / Ezekiel, C.N.; Udom, I.E.; Frisvad, Jens Christian; Adetunji, M.C.; Houbraken, J.; Fapohunda, S.O.; Samson, R.A.; Atanda, O.O.; Agi-Otto, M.C.; Onashile, O.A.

    In: Mycology, Vol. 5, No. 1, 2014, p. 16-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  182. Published

    A sustainable route to produce the scytonemin precursor using Escherichia coli. / Malla, Sailesh; Sommer, Morten O. A.

    In: Green Chemistry, Vol. 16, No. 6, 2014, p. 3255-3265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  183. Published

    A taxonomic and phylogenetic revision of Penicillium section Aspergilloides. / Houbraken, J.; Visagie, C.M.; Meijer, M.; Frisvad, Jens Christian; Busby, P.E.; Pitt, J.I.; Seifert, K.A.; Louis-Seize, G.; Demirel, R.; Yilmaz, N.; Jacobs, K.; Christensen, M.; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 373-451.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  184. Published
  185. Published

    A β1-6/β1-3 galactosidase fromBifidobacterium animalissubsp.lactisBl-04 gives insight into sub-specificities of β-galactoside catabolism withinBifidobacterium. / Viborg, Alexander Holm; Fredslund, Folmer; Katayama, Takane; Nielsen, Stinne Kirketerp; Svensson, Birte; Kitaoka, Motomitsu; Leggio, Leila Lo; Abou Hachem, Maher .

    In: Molecular Microbiology, Vol. 94, No. 5, 2014, p. 1024–1040.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  186. Published

    Bacterial diversity in snow on North Pole ice floes. / Hauptmann, Aviaja Zenia Edna Lyberth; Stibal, Marek ; Bælum, Jacob; Sicheritz-Pontén, Thomas; Brunak, Søren; Bowman, Jeff S.; Hansen, Lars H. ; Jacobsen, Carsten S.; Blom, Nikolaj.

    In: Extremophiles, Vol. 18, 2014, p. 945-951.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  187. Published
  188. Published
  189. Published
  190. Published
  191. Published

    Biological insights from 108 schizophrenia-associated genetic loci. / Ripke, Stephan; Neale, Benjamin M.; Corvin, Aiden ; Walters, James T. R. ; Farh, Kai-How ; Holmans, Peter A. ; Lee, Phil ; Bulik-Sullivan, Brendan ; Collier, David A. ; Huang, Hailiang ; Pers, Tune Hannes; Agerbo, Esben ; Demontis, Ditte ; Hansen, Thomas; Hollegaard, Mads Vilhelm; Hougaard, David M.; Mors, Ole; Werge, Thomas.

    In: Nature, Vol. 511, 2014, p. 421-427.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  192. Published

    Biosynthetic potential for polyketides in Talaromyces atroroseus. / Rasmussen, Kasper Bøwig; Mortensen, Uffe Hasbro; Thrane, Ulf.

    2014. Poster session presented at 12th European Conference on fungal genetics, Seville, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  193. Published

    Brazil nuts are subject to infection with B and G aflatoxin-producing fungus, Aspergillus pseudonomius. / Massi, Fernanda Pelisson; Cameiro Vieira, Maria Lucia; Sartori, Daniele; Silva Penha, Rafael Elias; Munhoz, Carla de Freitas; Ferreira, Josue Maldonado; Iamanaka, Beatriz Thie; Taniwaki, Marta Hiromi; Frisvad, Jens Christian; Pelegrinelli Fungaro, Maria Helena.

    In: INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, Vol. 186, 2014, p. 14-21.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  194. Published

    Cesarean section imprints cord blood immune cell distributions. / Thysen, Anna Hammerich; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Stokholm, J.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 438, 2014, p. 192-192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  195. Published

    Chaetomium and Stachybotrys in water-damaged buildings. / Andersen, Birgitte; Lewinska, Anna Malgorzata; Nielsen, Jakob Blæsbjerg; Dosen, Ina; Nielsen, Kristian Fog; Peuhkuri, Ruut Hannele; Rode, Carsten; Clausen, Geo; Thrane, Ulf.

    2014. Poster session presented at 10th International Mycological Congress, Bangkok, Thailand.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  196. Published
  197. Published

    Characterisation of Non-Autoinducing Tropodithietic Acid (TDA) Production from Marine Sponge Pseudovibrio Species.. / Harrington, Catriona; Reen, F. Jerry; Mooij, Marlies J.; Stewart, Fiona A.; Chabot, Jean-Baptiste; Guerra, Antonio F.; Glöckner, Frank O.; Nielsen, Kristian Fog; Gram, Lone; Dobson, Alan D. W.; Adams, Claire; O'Gara, Fergal.

    In: Marine Drugs, Vol. 12, 2014, p. 5960-5978.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  198. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  199. Published

    Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery.. / Hansen, Andreas M.; Rasmussen, Michael; Svitek, Nicholas; Harndahl, Mikkel; Golde, William T.; Barlow, John; Nene, Vishvanath; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 12, 2014, p. 705-718.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  200. Published

    Characterizing the human hematopoietic CDome. / Barnkob, Mike Stein; Simon, Christian; Olsen, Lars Rønn.

    In: Frontiers in Genetics, Vol. 5, 331, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  201. Published

    Chemical Characterization, Antioxidant and Enzymatic Activity of Brines from Scandinavian Marinated Herring Products. / Gringer, Nina; Osman, Ali; Nielsen, Henrik Hauch; Undeland, Ingrid; Baron, Caroline P.

    In: Journal of Food Processing & Technology, Vol. 5, No. 346, 1000346, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  202. Published

    Children developing asthma by school-age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, S.; Rasmussen, M.A.; Bisgaard, H.

    In: ALLERGY, Vol. 69, No. s99, 404, 2014, p. 179-179.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  203. Published

    Children with asthma by school age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, Sune; Rasmussen, Morten Arendt; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 133, No. 4, 2014, p. 1008-1013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  204. Published
  205. Published

    Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections. / Feliziani, Sofia; Marvig, Rasmus Lykke; Lujan, Adela M.; Moyano, Alejandro J.; Di Rienzo, Julio A.; Johansen, Helle Krogh; Molin, Søren; Smania, Andrea M.

    In: P L o S Genetics, Vol. 10, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  206. Published

    Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. / Geertz-Hansen, Henrik Marcus; Blom, Nikolaj; Feist, Adam; Brunak, Søren; Petersen, Thomas Nordahl.

    In: Proteins, Vol. 82, No. 9, 2014, p. 1819-1828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  207. Published
  208. Published

    Combining Experiments and Simulations Using the Maximum Entropy Principle. / Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten.

    In: P L o S Computational Biology (Online), Vol. 10, No. 2, e1003406, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  209. Published

    Comparative Genomic and Metabolomic Analysis of Twelve Strains of Pseudoalteromonas luteoviolacea. / Månsson, Maria; Vynne, Nikolaj Grønnegaard; Klitgaard, Andreas; Melchiorsen, Jette; Dorrestein, Pieter C.; Gram, Lone.

    2014. Poster session presented at Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  210. Published

    Comparison of the Web Tools ARG-ANNOT and ResFinder for Detection of Resistance Genes in Bacteria. / Zankari, Ea.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 8, 2014, p. 4986-4986.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  211. Published

    Compass: A hybrid method for clinical and biobank data mining. / Krysiak-Baltyn, Konrad; Petersen, Thomas Nordahl; Audouze, Karine Marie Laure; Jørgensen, Niels; Ängquist, L.; Brunak, Søren.

    In: Journal of Biomedical Informatics, Vol. 47, 2014, p. 160-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  212. Published

    Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn. / Fahnøe, Ulrik; Höper, Dirk ; Beer, Martin; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 1, e01142-13, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  213. Published

    Complete Genome Sequence of Classical Swine Fever Virus Genotype 2.2 Strain Bergen. / Fahnøe, Ulrik; Lohse, Louise; Becher, Paul ; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 3, 2014, p. e00483-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  214. Published

    Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. / Almeida, Mathieu; Hebert, Agnes; Abraham, Anne-Laure; Rasmussen, Simon; Monnet, Christophe; Pons, Nicolas; Delbes, Celine; Loux, Valentin; Batto, Jean-Michel; Leonard, Pierre; Kennedy, Sean; Ehrlich, Stanislas Dusko; Pop, Mihai; Montel, Marie-Christine; Irlinger, Francoise; Renault, Pierre.

    In: B M C Genomics, Vol. 15, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  215. Published

    Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes. / Zelezniak, Aleksej; Sheridan, Steven; Patil, Kiran Raosaheb.

    In: P L o S Computational Biology (Online), Vol. 10, No. 4, e1003572, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  216. Published

    CoreFlow: A computational platform for integration, analysis and modeling of complex biological data. / Pasculescu, Adrian; Schoof, Erwin; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D.; Pawson, Tony; Linding, Rune; Colwill, Karen.

    In: Journal of Proteomics, Vol. 100, 2014, p. 167-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  217. Published
  218. Published

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, Vol. 43, No. D1, 2014, p. D1140-D1144.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  219. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  220. Published

    Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. / Kim, Yohan; Sidney, John; Buus, Søren; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: B M C Bioinformatics, Vol. 15, No. 1, 241, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  221. Published

    Decoding network dynamics in cancer. / Linding, Rune.

    In: Clinical and Experimental Metastasis, Vol. 32, No. 3, 2014, p. 182-182.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  222. Published

    Defining the role of common variation in the genomic and biological architecture of adult human height. / Wood, Andrew R. ; Esko, Tonu; Yang, Jian; Vedantam, Sailaja; Pers, Tune Hannes; Gustafsson, Stefan; Chun, Audrey Y. ; Estrada, Karol; Luan, Jian'an; Folkersen, Lasse.

    In: Nature Genetics, Vol. 46, No. 11, 2014, p. 1173-1186.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  223. Published
  224. Published

    Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. / Olalde, Inigo; Allentoft, Morten E.; Sanchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W. K.; DeGiorgio, Michael; Prado-Martinez, Javier; Rodriguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramirez, Oscar; Marigorta, Urko M.; Fernandez-Callejo, Marcos; Prada, Maria Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G.; Novembre, John; Sturm, Richard A.; Sabeti, Pardis; Marques-Bonet, Tomas; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles.

    In: NATURE, Vol. 507, No. 7491, 2014, p. 225-228.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  225. Published

    Design and application of transcription factor based metabolite sensors in Escherichia coli. / Siedler, Solvej; Stahlhut, Steen Gustav; Bringer, Stephanie; Bott, Michael; Maury, Jerome; Sommer, Morten Otto Alexander.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  226. Published

    Detection of a caspase-3 cleaved tau fragment in the serum of alzheimer's patients by using immunoprecipitation and lc-ms/ms. / Inekci, Dilek; Hägglund, Per; Linemann, Thomas; Jacobsen, Susanne; Svensson, Birte; Vilholm, Ole; Henriksen, Kim.

    In: Alzheimer's & Dementia, Vol. 10, No. 4, 2014, p. P272-P273.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  227. Published

    Determining and comparing protein function in Bacterial genome sequences. / Vesth, Tammi Camilla; Ussery, David (Main supervisor); Lagesen, Karin (Supervisor).

    Technical University of Denmark, 2014. 101 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  228. Published

    Development of droplets‐based microfluidic systems for single­‐cell high‐throughput screening. / Chen, Jun; Jensen, Thomas Glasdam; Godina, Alexei; Solem, Christian; Dufva, Martin; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  229. Published

    Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution. / Fisher, Rosalie; Horswell, Stuart; Rowan, Andrew; Salm, Maximilian P.; de Bruin, Elza C.; Gulati, Sakshi; McGranahan, Nicholas; Stares, Mark; Gerlinger, Marco; Varela, Ignacio; Crockford, Andrew; Favero, Francesco; Quidville, Virginie; André, Fabrice; Navas, Carolina; Grönroos, Eva; Nicol, David; Hazell, Steve; Hrouda, David; O’Brien, Tim; Matthews, Nik; Phillimore, Ben; Begum, Sharmin; Rabinowitz, Adam; Biggs, Jennifer; Bates, Paul A.; McDonald, Neil Q.; Stamp, Gordon; Spencer-Dene, Bradley; Hsieh, James J.; Xu, Jianing; Pickering, Lisa; Gore, Martin; Larkin, James; Swanton, Charles.

    In: Genome Biology (Online Edition), Vol. 15, No. 8, 433, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  230. Published

    Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires. / Bergseng, Elin; Dørum, Siri; Arntzen, Magnus Ø.; Nielsen, Morten; Nygård, Ståle; Buus, Søren; de Souza, Gustavo A. ; Sollid, Ludvig M.

    In: Immunogenetics, Vol. 67, No. 2, 2014, p. 73-84.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  231. Published

    Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides. / Bonde, Mads; Kosuri, Sriram; Genee, Hans Jasper; Sarup-Lytzen, Kira; Church, George M.; Sommer, Morten; Wang, Harris H.

    In: A C S Synthetic Biology, Vol. 4, No. 1, 2014, p. 17-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  232. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium. / Koivula, Robert W.; Heggie, Alison; Barnett, Anna; Cederberg, Henna; Hansen, Tue Haldor; Koopman, Anitra D.; Ridderstrale, Martin; Rutters, Femke; Vestergaard, Henrik; Gupta, Ramneek; Herrgard, Sanna; Heymans, Martijn W.; Perry, Mandy H.; Rauh, Simone; Siloaho, Maritta; Teare, Harriet J. A.; Thorand, Barbara; Bell, Jimmy; Brunak, Søren; Frost, Gary; Jablonka, Bernd; Mari, Andrea; McDonald, Tim J.; Dekker, Jacqueline M.; Hansen, Torben; Hattersley, Andrew; Laakso, Markku; Pedersen, Oluf; Koivisto, Veikko; Ruetten, Hartmut; Walker, Mark; Pearson, Ewan; Franks, Paul W.

    In: DIABETOLOGIA, Vol. 57, No. 6, 2014, p. 1132-1142.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  233. Published

    Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA. / Eriksson, Robert; Aagaard, Lise; Jensen, Lars Juhl; Borisova, Liza; Hørlück, Dorte; Brunak, Søren; Hansen, Ebba Holme.

    In: Pharmacology Research & Perspectives, Vol. 2, No. 3, e00038, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  234. Published

    Distinct substrate specificities of three glycoside hydrolase family 42 β-galactosidases from Bifidobacterium longum subsp. infantis ATCC 15697. / Viborg, Alexander Holm; Katayama, Takane; Abou Hachem, Maher ; Andersen, Mathias Christian Franch; Nishimoto, Mamoru; Clausen, Mads Hartvig; Urashima, Tadasu; Svensson, Birte; Kitaoka, Motomitsu.

    In: Glycobiology, Vol. 24, No. 2, 2014, p. 208-216.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  235. Published

    Diversity Generation in Evolving Microbial Populations. / Markussen, Trine; Jelsbak, Lars (Main supervisor); Molin, Søren (Supervisor).

    Technical University of Denmark, 2014. 126 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  236. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. / Sander, Adam F.; Lavstsen, Thomas; Rask, Thomas Salhøj; Lisby, Michael; Salanti, Ali; Fordyce, Sarah L.; Jespersen, Jakob S.; Carter, Richard; Deitsch, Kirk W.; Theander, Thor G.; Pedersen, Anders Gorm; Arnot, David E.

    In: Nucleic Acids Research, Vol. 42, No. 4, 2014, p. 202270-2281.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  237. Published

    Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, No. 4, 2014, p. 237-247.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  238. Published

    Draft Genome Sequence of Hoeflea sp. Strain BAL378, a Potential Producer of Bioactive Compounds. / Bentzon-Tilia, Mikkel; Riemann, Lasse; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 6, 2014, p. e01213-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  239. Published

    Draft Genome Sequence of Photobacterium halotolerans S2753, Producer of Bioactive Secondary Metabolites. / Machado, Henrique; Månsson, Maria; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 3, e00535-14, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  240. Published

    Drought priming at vegetative growth stages improves tolerance to drought and heat stresses occurring during grain filling in spring wheat. / Wang, Xiao; Vignjevic, Marija; Liu, Fulai; Jacobsen, Susanne; Jiang, Dong; Wollenweber, Bernd .

    In: Plant Growth Regulation, Vol. 75, No. 3, 2014, p. 677-687.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  241. Published

    Dynamics of co-existing Escherichia colilineages in situ of the infant gut and multiplex phenotypic targeted recovery of previously uncultivated bacteria from the human gut. / Gumpert, Heidi.

    Kgs. Lyngby : Technical University of Denmark (DTU), 2014. 196 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  242. Published

    Early immune response patterns to pathogenic bacteria are associated to increased risk of lower respiratory infections in children. / Vissing, N. H.; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Thysen, Anna Hammerich; Chawes, B. L.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 84, 2014, p. 37-37.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  243. Published
  244. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  245. Published

    Effects of pregnancy on obesity-induced inflammation in a mouse model of fetal programming. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, D.; Nordby, Pernille; Nielsen, Kristian Fog; Ozanne, S. E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: International Journal of Obesity, Vol. 38, No. 10, 2014, p. 1282-1289.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  246. Published

    Effects on metabolic markers are modified by PPARG2 and COX2 polymorphisms in infants randomized to fish oil.. / Harsløf, Laurine B. S.; Damsgaard, Camilla T.; Hellgren, Lars I.; Andersen, Anders Daniel; Vogel, Ulla; Lauritzen, Lotte.

    In: Genes & Nutrition, Vol. 9, No. 3, 396, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  247. Published

    Engineering amino acid supply pathways in Chinese hamster ovary cells. / Ley, Daniel; Lund, Anne Mathilde; Rank, Julie; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2014. Poster session presented at 9th Danish Conference on Biotechnology and Molecular Biology, Denmark.

    Publication: ResearchPoster – Annual report year: 2014

  248. Published

    Enhancing Reproducibility in Cancer Drug Screening: How Do We Move Forward?. / Shi, Leming; Haibe-Kains, Benjamin; Birkbak, Nicolai Juul; Bedard, Philippe L.; Hatzis, Christos; Stern, David F.; Clarke, Robert; Quackenbush, John; Beck, Andrew H.; Aerts, Hugo J. W. L.

    In: Cancer Research, Vol. 74, No. 15, 2014, p. 4016-4023.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  249. Published

    Environmental controls on ozone fluxes in a poplar plantation in Western Europe. / Zona, D.; Gioli, B.; Fares, S.; De Groote, T.; Pilegaard, Kim; Ibrom, Andreas; Ceulemans, R.

    In: Environmental Pollution, Vol. 184, No. Sp. Iss. SI, 2014, p. 201-210.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  250. Published

    Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa.. / Markussen, Trine; Marvig, Rasmus Lykke; Gómez Lozano, María; Aanæs, Kasper; Burleigh, Alexandra E.; Høiby, Niels; Johansen, Helle Krogh; Molin, Søren; Jelsbak, Lars.

    In: mBio (Online), Vol. 5, No. 5, 2014, p. e01592-e01514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  251. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts. / Boomsma, Wouter; Tian, Pengfei; Frellsen, J.; Ferkinghoff-Borg, Jesper; Hamelryck, T.; Lindorff-Larsen, K.; Vendruscolo, M.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 38, 2014, p. 13852-13857.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  252. Published

    Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, 2014, p. 379.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2014

  253. Published

    Estimating biological elementary flux modes that decompose a flux distribution by the minimal branching property. / Chan, Siu Hung Joshua; Solem, Christian; Jensen, Peter Ruhdal; Ji, P.

    In: Bioinformatics, Vol. 30, No. 22, 2014, p. 3232-3239.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  254. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  255. Published

    Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations.. / Sandberg, Troy E.; Pedersen, Margit; LaCroix, Ryan A.; Ebrahim, Ali; Bonde, Mads; Herrgard, Markus; Palsson, Bernhard; Sommer, Morten; Feist, Adam.

    In: Molecular Biology and Evolution, Vol. 31, No. 10, 2014, p. 2647-2662.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  256. Published
  257. Published

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, Vol. 71, No. 2, 2014, p. 905-929.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  258. Published

    Experimental and computational tools for analysis of signaling networks in primary cells. / Schoof, Erwin M; Linding, Rune.

    In: Current Protocols in Immunology, Vol. 104, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  259. Published
  260. Published

    Exploring mechanisms of diet-colon cancer associations through candidate molecular interaction networks. / Westergaard, David; Li, Jun; Jensen, Kasper; Kouskoumvekaki, Irene; Panagiotou, Gianni.

    In: B M C Genomics, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  261. Published
  262. Published

    Expression of regulators of mitotic fidelity are associated with intercellular heterogeneity and chromosomal instability in primary breast cancer.. / Roylance, Rebecca; Endesfelder, David; Jamal-Hanjani, Mariam; Burrell, Rebecca A.; Gorman, Patricia; Sander, Jil; Murphy, Niamh; Birkbak, Nicolai Juul; Hanby, Andrew M.; Speirs, Valerie; Johnston, Stephen R. D.; Kschischo, Maik; Swanton, Charles.

    In: Breast Cancer Research and Treatment, Vol. 148, No. 1, 2014, p. 221-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  263. Published

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour ; Brunak, Søren.

    In: Briefings in Bioinformatics, Vol. 15, No. 6, 2014, p. 942-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  264. Published
  265. Published

    Front line defenders of the ecological niche! Screening the structural diversity of peptaibiotics from saprotrophic and fungicolous Trichoderma/Hypocrea species. / Röhrich, Christian René; Jaklitsch, Walter Michael; Voglmayr, Hermann; Iversen, Anita; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; von Döhren, Hans; Brückner, Hans; Degenkolb, Thomas.

    In: Fungal Diversity, Vol. 69, 2014, p. 117-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  266. Published

    Fusarium. / Thrane, Ulf.

    Encyclopedia of Food microbiology. Vol. 2 2nd. ed. Elsevier, 2014. p. 76-81.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  267. Published

    Fusarium graminearum PKS14 is involved in orsellinic acid and orcinol synthesis. / Jørgensen, Simon Hartung ; Frandsen, Rasmus John Normand; Nielsen, Kristian Fog; Lysøe, Erik; Sondergaard, Teis Esben; Wimmer, Reinhard; Giese, Henriette; Sørensen, Jens Laurids.

    In: Fungal Genetics and Biology, Vol. 70, 2014, p. 24-31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  268. Published

    Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. / Arking, Dan E; Pulit, Sara L; Crotti, Lia; van der Harst, Pim; Munroe, Patricia B; Koopmann, Tamara T; Sotoodehnia, Nona; Rossin, Elizabeth J; Morley, Michael; Wang, Xinchen; Johnson, Andrew D; Lundby, Alicia; Gudbjartsson, Daniel F.; Noseworthy, Peter A; Eijgelsheim, Mark; Bradford, Yuki; Tarasov, Kirill V; Dörr, Marcus; Müller-Nurasyid, Martina; Lahtinen, Annukka M; Nolte, Ilja M; Smith, Albert Vernon; Bis, Joshua C; Isaacs, Aaron; Newhouse, Stephen J; Evans, Daniel S; Post, Wendy S; Waggott, Daryl; Lyytikäinen, Leo-Pekka; Hicks, Andrew A; Eisele, Lewin; Ellinghaus, David; Hayward, Caroline; Navarro, Pau; Ulivi, Sheila; Tanaka, Toshiko; Tester, David J; Chatel, Stephanie; Gustafsson, Stefan; Kumari, Meena; Morris, Richard W; Naluai, Asa T; Padmanabhan, Sandosh; Kluttig, Alexander; Strohmer, Bernhard; Panayiotou, Andrie G; Torres, Maria; Knoflach, Michael; Hubacek, Jaroslav A; Slowikowski, Kamil; Raychaudhuri, Soumya; Kumar, Runjun D; Harris, Tamara B; Launer, Lenore J; Shuldiner, Alan R; Alonso, Alvaro; Bader, Joel S; Ehret, Georg; Huang, Hailiang; Kao, W H Linda; Strait, James B; Macfarlane, Peter W; Brown, Morris; Caulfield, Mark J; Samani, Nilesh J; Kronenberg, Florian; Willeit, Johann; Smith, J Gustav; Greiser, Karin H; Meyer Zu Schwabedissen, Henriette; Werdan, Karl; Carella, Massimo; Zelante, Leopoldo; Heckbert, Susan R; Psaty, Bruce M; Rotter, Jerome I; Kolcic, Ivana; Polasek, Ozren; Wright, Alan F; Griffin, Maura; Daly, Mark J; Arnar, David O; H��lm, Hilma; Thorsteinsdottir, Unnur; Denny, Joshua C; Roden, Dan M; Zuvich, Rebecca L; Emilsson, Valur; Plump, Andrew S; Larson, Martin G; O'Donnell, Christopher J; Yin, Xiaoyan; Bobbo, Marco; D'Adamo, Adamo P; Iorio, Annamaria; Sinagra, Gianfranco; Carracedo, Angel; Cummings, Steven R; Nalls, Michael A; Jula, Antti; Kontula, Kimmo K; Marjamaa, Annukka; Oikarinen, Lasse; Perola, Markus; Porthan, Kimmo; Erbel, Raimund; Hoffmann, Per; Jöckel, Karl-Heinz; Kälsch, Hagen; Nöthen, Markus M; den Hoed, Marcel; Loos, Ruth J F; Thelle, Dag S; Gieger, Christian; Meitinger, Thomas; Perz, Siegfried; Peters, Annette; Prucha, Hanna; Sinner, Moritz F; Waldenberger, Melanie; de Boer, Rudolf A; Franke, Lude; van der Vleuten, Pieter A; Beckmann, Britt Maria; Martens, Eimo; Bardai, Abdennasser; Hofman, Nynke; Wilde, Arthur A M; Behr, Elijah R; Dalageorgou, Chrysoula; Giudicessi, John R; Medeiros-Domingo, Argelia; Barc, Julien; Kyndt, Florence; Probst, Vincent; Ghidoni, Alice; Insolia, Roberto; Hamilton, Robert M; Scherer, Stephen W; Brandimarto, Jeffrey; Margulies, Kenneth; Moravec, Christine E; Fabiola, no-firstname; Fuchsberger, Christian; O'Connell, Jeffrey R; Lee, Wai K; Watt, Graham C M; Campbell, Harry; Wild, Sarah H; El Mokhtari, Nour E; Frey, Norbert; Asselbergs, Folkert W; Leach, Irene Mateo; Navis, Gerjan; van den Berg, Maarten P; van Veldhuisen, Dirk J; Kellis, Manolis; Krijthe, Bouwe P; Franco, Oscar H; Hofman, Albert; Kors, Jan A; Uitterlinden, Andre G.; Witteman, Jacqueline C M; Kedenko, Lyudmyla; Lamina, Claudia; Oostra, Ben A; Abecasis, Goncalo R; Lakatta, Edward G; Mulas, Antonella; Orrú, Marco; Schlessinger, David; Uda, Manuela; Markus, Marcello R P; Völker, Uwe; Snieder, Harold; Spector, Timothy D; Arnlöv, Johan; Lind, Lars; Sundström, Johan; Syvänen, Ann-Christine; Kivimaki, Mika; Kähönen, Mika; Mononen, Nina; Raitakari, Olli T; Viikari, Jorma S; Adamkova, Vera; Kiechl, Stefan; Brion, Maria; Nicolaides, Andrew N; Paulweber, Bernhard; Haerting, Johannes; Dominiczak, Anna F; Nyberg, Fredrik; Whincup, Peter H; Hingorani, Aroon D; Schott, Jean-Jacques; Bezzina, Connie R; Ingelsson, Erik; Ferrucci, Luigi; Gasparini, Paolo; Wilson, James F; Rudan, Igor; Franke, Andre; Mühleisen, Thomas W; Pramstaller, Peter P; Lehtimäki, Terho J; Paterson, Andrew D; Parsa, Afshin; Liu, Yongmei; van Duijn, Cornelia M; Siscovick, David S; Gudnason, Vilmundur; Jamshidi, Yalda; Salomaa, Veikko; Felix, Stephan B; Sanna, Serena; Ritchie, Marylyn D; Stricker, Bruno H; Stefansson, Kari; Boyer, Laurie A; Cappola, Thomas P; Olsen, Jesper V; Hansen, Kasper Lage; Schwartz, Peter J; Kääb, Stefan; Chakravarti, Aravinda; Ackerman, Michael J; Pfeufer, Arne; de Bakker, Paul I W; Newton-Cheh, Christopher; no-lastname, no-firstname.

    In: Nature Genetics, Vol. 46, No. 8, 2014, p. 826-836.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  269. Published

    Genetic Basis for Saccharomyces cerevisiae Biofilm in Liquid Medium. / Andersen, Kaj Scherz; Bojsen, Rasmus Kenneth; Gro Rejkjær Sørensen, Laura; Weiss Nielsen , Martin ; Lisby, Michael; Folkesson, Sven Anders; Regenberg, Birgitte.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 4, 2014, p. 1671-1680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  270. Published

    Genetic transformation of Fusarium avenaceum by Agrobacterium tumefaciens mediated transformation and the development of a USER-Brick vector construction system. / Sorensen, Lisette Quaade; Lysøe, Erik; Larsen, Jesper Erup; Khorsand-Jamal, Paiman; Nielsen, Kristian Fog; Frandsen, Rasmus John Normand.

    In: B M C Molecular Biology, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  271. Published

    Genome and physiology of the ascomycete filamentous fungus Xeromyces bisporus, the most xerophilic organism isolated to date. / Leong, Su-lin L.; Lantz, Henrik; Pettersson, Olga V.; Frisvad, Jens Christian; Thrane, Ulf; Heipieper, Hermann J.; Dijksterhuis, Jan; Grabherr, Manfred; Pettersson, Mats; Tellgren-Roth, Christian; Schnürer, Johan.

    In: Environmental Microbiology, Vol. 17, No. 2, 2014, p. 496-513.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  272. Published

    Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans. / Moreno-Mayar, J. Víctor; Rasmussen, Simon; Seguin-Orlando, Andaine; Rasmussen, Morten; Liang, Mason; Flåm, Siri Tennebø; Lie, Benedicte Alexandra; Gilfillan, Gregor Duncan; Nielsen, Rasmus; Thorsby, Erik; Willerslev, Eske; Malaspinas, Anna-Sapfo.

    In: Current Biology, Vol. 24, No. 21, 2014, p. 2518-2525.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  273. Published

    Genome-wide association analyses identify variants in developmental genes associated with hypospadias. / Geller, Frank; Feenstra, Bjarke; Carstensen, Lisbeth; Pers, Tune H.; van Rooij, Iris A. L. M.; Korberg, Izabella Baranowska; Choudhry, Shweta; Karjalainen, Juha M.; Schnack, Tine H.; Hollegaard, Mads V.; Feitz, Wout F. J.; Roeleveld, Nel; Hougaard, David M.; Hirschhorn, Joel N.; Franke, Lude; Baskin, Laurence S.; Nordenskjold, Agneta; van der Zanden, Loes F. M.; Melbye, Mads.

    In: Nature Genetics, Vol. 46, No. 9, 2014, p. 957-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  274. Published
  275. Published
  276. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL/6 mice fed and high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2014. Abstract from The Danish Microbiological Society Annual Congress 2014, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  277. Published
  278. Published
  279. Published

    Guanidino groups greatly enhance the action of antimicrobial peptidomimetics against bacterial cytoplasmic membranes.. / Andreev, Konstantin; Bianchi, Christopher; Laursen, Jonas Striegler; Citterio, Linda; Hein-Kristensen, Line; Gram, Lone; Kuzmenko, Ivan; Olsen, Christian Adam; Gidalevitz, David.

    In: Biochimica et Biophysica Acta. Biomembranes, Vol. 1838, No. 10, 2014, p. 2492-2502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  280. Published

    Hearing loss in relation to sound exposure of professional symphony orchestra musicians. / Schmidt, J. H. ; Pedersen, E. R.; Paarup, H. M.; Christensen-Dalsgaard, Jakob; Andersen, T; Poulsen, T.; Bælum, Jacob.

    In: Ear and Hearing, Vol. 35, No. 4, 2014, p. 448-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  281. Published

    High-Resolution Melt Analysis for Rapid Comparison of Bacterial Community Compositions. / Hjelmsø, Mathis Hjort; Hansen, Lars Hestbjerg; Bælum, Jacob; Feld, Louise; Holben, William E.; Jacobsen, Carsten Suhr.

    In: Applied and Environmental Microbiology, Vol. 80, No. 12, 2014, p. 3568-3575.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  282. Published

    Host genome variations and risk of infections during induction treatment for childhood acute lymphoblastic leukaemia. / Lund, Bendik; Wesolowska-Andersen, Agata; Lausen, Birgitte; Borst, Louise; Rasmussen, Kirsten Kørup; Müller, Klaus; Klungland, Helge; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: European Journal of Haematology, Vol. 92, No. 4, 2014, p. 321-330.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  283. Published

    Human Intestinal Cells Modulate Conjugational Transfer of Multidrug Resistance Plasmids between Clinical Escherichia coli Isolates.. / Machado, Ana Manuel; Sommer, Morten.

    In: P L o S One, Vol. 9, No. 6, 2014, p. e100739.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  284. Published

    Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank). / Tsangaras, Kyriakos; Wales, Nathan; Sicheritz-Pontén, Thomas; Rasmussen, Simon; Michaux, Johan; Ishida, Yasuko; Morand, Serge; Kampmann, Marie-Louise; Gilbert, M. Thomas P.; Greenwood, Alex D.

    In: PLOS ONE, Vol. 9, No. 10, e109101, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  285. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  286. Published

    Identification and fine mapping of a linear B cell epitope of human vimentin.. / Dam, Catharina Essendrup; Houen, Gunnar; Hansen, Paul R.; Trier, Nicole H.

    In: Scandinavian Journal of Clinical & Laboratory Investigation, Vol. 74, No. 6, 2014, p. 506-514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  287. Published

    Identification and HLA-Tetramer-Validation of Human CD4(+) and CD8(+) T Cell Responses against HCMV Proteins IE1 and IE2. / Braendstrup, Peter; Mortensen, Bo Kok; Justesen, Sune Frederik Lamdahl; Osterby, Thomas; Rasmussen, Michael; Hansen, Andreas Martin; Christiansen, Claus Bohn; Hansen, Morten Bagge; Nielsen, Morten; Vindelov, Lars; Buus, Søren; Stryhn, Anette.

    In: PLOS ONE, Vol. 9, No. 4, e94892, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  288. Published

    Identification and nomenclature of the genus Penicillium. / Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 343-371.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  289. Published

    Identification of Bacterial Small RNAs by RNA Sequencing. / Gómez Lozano, María; Marvig, Rasmus Lykke; Molin, Søren; Long, Katherine.

    Pseudomonas Methods and Protocols. ed. / Alain Filloux; Juan-Luis Ramos. Springer Science+Business Media B.V., 2014. p. 433-456 (Methods in Molecular Biology, Vol. 1149).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  290. Published

    Identification of Hypoxia-Regulated Proteins Using MALDI-Mass Spectrometry Imaging Combined with Quantitative Proteomics. / Djidja, Marie-Claude; Chang, Joan; Hadjiprocopis, Andreas; Schmich, Fabian; Sinclair, John; Mršnik, Martina; Schoof, Erwin M.; Barker, Holly E.; Linding, Rune; Jørgensen, Claus; Erler, Janine T.

    In: Journal of Proteome Research, Vol. 13, 2014, p. 2297-2313.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  291. Published

    Identification of Metabolic Pathways Essential for Fitness of Salmonella Typhimurium In Vivo. / Jelsbak, Lotte; Hartman, Hassan ; Schroll, Casper; Rosenkrantz, Jesper Tjørnholt; Lemire, Sebastien; Wallrodt, Inke; Thomsen, Line Elnif; Poolman, Mark ; Kilstrup, Mogens; Jensen, Peter Ruhdal; Olsen, John E.

    In: P L o S One, Vol. 9, No. 7, e101869, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  292. Published

    Identification of novel immune and barrier genes in atopic dermatitis by laser capture micro-dissection. / Esaki, H.; Ewald, David Adrian; Ungar, B.; Rozenblit, M.; Zheng, Xueyan; Xu, Hao Ran; Estrada, Y. D.; Peng, X.; Mitsui, H.; Litman, T.; Suarez-Farinas, M.; Krueger, J. G.; Guttman-Yassky, E.

    In: Experimental Dermatology, Vol. 23, 2014, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  293. Published

    Identification of Odorant-Receptor Interactions by Global Mapping of the Human Odorome. / Audouze, Karine Marie Laure; Tromelin, Anne; Le Bon, Anne Marie; Belloir, Christine; Petersen, Rasmus Koefoed; Kristiansen, Karsten; Brunak, Søren; Taboureau, Olivier .

    In: PLOS ONE, Vol. 9, No. 4, e93037, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  294. Published

    Identification of potential drug targets in Salmonella enterica sv. Typhimurium using metabolic modelling and experimental validation. / Hartman, Hassan B.; Fell, David A.; Rossell, Sergio; Jensen, Peter Ruhdal; Woodward, Martin J.; Thorndahl, Lotte; Jelsbak, Lotte; Elmerdahl Olsen, John ; Raghunathan, Anu; Daefler, Simon; Poolman, Mark G.

    In: Microbiology, Vol. 160, No. 6, 2014, p. 1252-1266.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  295. Published

    Identification of the Biosynthetic Gene Clusters for the Lipopeptides Fusaristatin A and W493 B in Fusarium graminearum and F. pseudograminearum. / Sørensen, Jens Laurids; Sondergaard, Teis Esben; Covarelli, Lorenzo; Fuertes, Patricia Romans ; Nielsen, Kristian Fog.

    In: Journal of Natural Products, Vol. 77, No. 12, 2014, p. 2619–2625.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  296. Published

    Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags. / Hägglund, Per; Bunkenborg, Jakob; Maeda, Kenji; Finnie, Christine; Svensson, Birte.

    Plant Proteomics: Methods and Protocols. Vol. Part VIII 2014. p. 677-685 (Methods in Molecular Biology, Vol. 1072).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  297. Published
  298. Published

    Immobilization of cellulase mixtures on magnetic particles for hydrolysis of lignocellulose and ease of recycling. / Alftrén, Johan; Hobley, Timothy John.

    In: Biomass and Bioenergy, Vol. 65, 2014, p. 72-78.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  299. Published

    Immunoinformatics of Placental Malaria Vaccine Development. / Jessen, Leon Eyrich; Lund, Ole (Main supervisor); Hviid, Lars (Supervisor); Nielsen, Morten (Supervisor).

    Technical University of Denmark, 2014. 239 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  300. Published

    Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment. / Carrasco Pro, S.; Zimic, M.; Nielsen, Morten.

    In: Tissue Antigens, Vol. 83, No. 2, 2014, p. 94-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  301. Published

    Improved tolerance to drought stress after anthesis due to priming before anthesis in wheat (Triticum aestivum L.) var. Vinjett.. / Wang, Xiao; Vignjevic, Marija; Jiang, Dong; Jacobsen, Susanne; Wollenweber, Bernd .

    In: Journal of Experimental Botany, Vol. 65, No. 22, 2014, p. 6441-6456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  302. Published

    Improving biotech education through gamified laboratory simulations. / Bonde, Mads; Makransky, Guido; Wandall, Jakob; Larsen, Mette Voldby; Morsing, Mikkel; Jarmer, Hanne Østergaard; Sommer, Morten.

    In: Nature Biotechnology, Vol. 32, No. 7, 2014, p. 694-697.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  303. Published

    Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. / Messih, M. A.; Lepore, R.; Marcatili, Paolo; Tramontano, A.

    In: Bioinformatics, Vol. 30, No. 19, 2014, p. 2733-2740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  304. Published
  305. Published

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  306. Published

    In silico prediction of Gallibacterium anatis pan-immunogens. / Bager, Ragnhild J.; Kudirkiene, Egle; da Piedade, Isabelle; Seemann, Torsten; Nielsen, Tine K.; Pors, Susanne E.; Mattsson, Andreas Holm; Boyce, John D.; Adler, Ben; Bojesen, Anders M.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  307. Published
  308. Published

    Interaction of Lactobacillus acidophilus NCFM grown on different carbohydrates with human intestinal epithelial cells: Adhesion Properties and roles of S-layer Proteins. / Celebioglu, Hasan Ufuk; Lahtinen, Sampo J; Pedersen, Susanne Brix; Abou Hachem, Maher ; Svensson, Birte.

    2014. Abstract from 11th international Symposium on Lactic Acid Bacteria, Egmond aan Zee, Netherlands.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  309. Published

    Intercorrelations of lipoprotein subfractions and their covariation with lifestyle factors in healthy men. / Parlesak, Alexandr; Eckoldt, Joachim; Winkler, Karl; Bode, Johann Christian.

    In: Journal of Clinical Biochemistry and Nutrition, Vol. 54, No. 3, 2014, p. 174-180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  310. Published
  311. Published

    Prymnesium parvum revisited: relationship between allelopathy, ichthyotoxicity, and chemical profiles in 5 strains. / Blossom, Hannah E.; Rasmussen, Silas Anselm; Andersen, Nikolaj Gedsted; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Hansen, Per J. .

    In: Aquatic Toxicology, Vol. 157, 2014, p. 159-166.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  312. Published
  313. Published
  314. Published

    KinomeXplorer: an integrated platform for kinome biology studies. / Horn, Heiko; Schoof, Erwin; Kim, Jinho; Robin, Xavier; Miller, Martin Lee; Diella, Francesca; Palma, Anita; Cesareni, Gianni; Jensen, Lars Juhl; Linding, Rune.

    In: Nature Methods, Vol. 11, No. 6, 2014, p. 603-604.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  315. Published

    Lactate dehydrogenase as a selection criterion for ipilimumab treatment in metastatic melanoma. / Kelderman, Sander; Heemskerk, Bianca; van Tinteren, Harm; van den Brom, Rob R. H.; A. P. Hospers, Geke; van den Eertwegh, Alfonsus J. M.; W. Kapiteijn, Ellen; Willem B. de Groot, Jan; Soetekouw, Patricia; L. Jansen, Rob; Fiets , Edward; J. S. Furness, Andrew; Renn, Alexandra; Krzystanek, Marcin; Szallasi, Zoltan Imre; Lorigan, Paul; Gore, Martin E.; N. M. Schumacher, Ton; B. A. G. Haanen, John; Larkin, James M.G.; U. Blank, Christian.

    In: Cancer Immunology, Immunotherapy, Vol. 63, No. 5, 2014, p. 449-458.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  316. Published

    Large-scale analysis of B-cell epitopes on influenza virus hemagglutinin - implications for cross-reactivity of neutralizing antibodies.. / Sun, Jing; Kudahl, Ulrich J.; Simon, Christian; Cao, Zhiwei; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Frontiers in Immunology, Vol. 5, 38, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  317. Published

    Large-scale bioreactor production of the herbicide-degrading Aminobacter sp. strain MSH1. / Schultz-Jensen, Nadja; Knudsen, Berith Elkær; Frkova, Zuzana; Aamand, Jens; Johansen, Tina; Thykær, Jette; Sørensen, Sebastian R.

    In: Applied Microbiology and Biotechnology, Vol. 98, No. 5, 2014, p. 2335-2344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  318. Published

    Library sequencing strategies for comparative analysis of stress resistance mechanisms in Escherichia coli strains. / Lennen, Rebecca; Bonde, Ida; Koza, Anna; Herrgard, Markus.

    In: New Biotechnology, Vol. 31, 2014, p. S86.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  319. Published

    Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells.. / Re, Angela; Workman, Christopher; Waldron, Levi; Quattrone, Alessandro; Brunak, Søren.

    In: Stem Cell Research, Vol. 13, No. 2, 2014, p. 316-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  320. Published

    Linear versus conformational epitopes of three cow's milk allergens. / Bøgh, Katrine Lindholm; Madsen, Jeanette Lund; Kroghsbo, Stine; Madsen, Charlotte Bernhard; Barkholt, Vibeke.

    In: Clinical and Translational Allergy, Vol. 4 , No. Suppl 2, P23, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  321. Published

    LocTree3 prediction of localization. / Goldberg, T.; Hecht, M.; Hamp, T.; Karl, T.; Yachdav, G.; Ahmed, Nadeed; Altermann, U.; Angerer, P.; Ansorge, S.; Balasz, K.; Bernhofer, M.; Betz, A.; Cizmadija, L.; Do, K. T.; Gerke, J.; Greil, R.; Joerdens, V.; Hastreiter, M.; Hembach, K.; Herzog, M.; Kalemanov, M.; Kluge, M.; Meier, A.; Nasir, H.; Neumaier, U.; Prade, V.; Reeb, J.; Sorokoumov, A.; Troshani, I.; Vorberg, S.; Waldraff, S.; Zierer, J.; Nielsen, Henrik; Rost, B.

    In: Nucleic Acids Research, Vol. 42, No. W1, 2014, p. W350-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  322. Published

    Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis. / Jiricny, Natalie; Molin, Søren; Foster, Kevin; Diggle, Stephen P.; Scanlan, Pauline D.; Ghoul, Melanie; Johansen, Helle Krogh; Santorelli, Lorenzo A.; Popat, Roman; West, Stuart A.; Griffin, Ashleigh S.

    In: P L o S One, Vol. 9, No. 1, 2014, p. Article No.: e83124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  323. Published

    Low molecular weight protein tyrosine phosphatases control antibiotic production in Streptomyces coelicolor A3(2). / Sohoni, Sujata Vijay; Lieder, Sarah; Bapat, Prashant Madhusudhan; Mijakovic, Ivan; Eliasson Lantz, Anna.

    In: Enzyme Engineering, Vol. 3, No. 1, 1000122, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  324. Published

    Lysine deacetylase inhibition prevents diabetes by chromatin-independent immunoregulation and β-cell protection. / Christensen, Dan Ploug; Gysemans, Conny; Lundh, Morten; Dahllöf, Mattias Salling; Noesgaard, Daniel; Schmidt, Søren Fisker; Mandrup, Susanne; Birkbak, Nicolai Juul; Workman, Christopher; Piemonti, Lorenzo; Blaabjerg, Lykke; Monzani, Valmen; Fossati, Gianluca; Mascagni, Paolo; Paraskevas, Steven; Aikin, Reid A.; Billestrup, Nils; Grunnet, Lars Groth; Dinarello, Charles A.; Mathieu, Chantal; Mandrup-Poulsen, Thomas.

    In: National Academy of Sciences. Proceedings, Vol. 111, No. 3, 2014, p. 1055-1059.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  325. Published

    Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. / Mason, Olivia U.; Scott, Nicole M.; Gonzalez, Antonio; Robbins-Pianka, Adam; Bælum, Jacob; Kimbrel, Jeffrey; Bouskill, Nicholas J.; Prestat, Emmanuel; Borglin, Sharon; Joyner, Dominique C.; Fortney, Julian L.; Jurelevicius, Diogo; Stringfellow, William T.; Alvarez-Cohen, Lisa; Hazen, Terry C.; Knight, Rob; Gilbert, Jack A.; Jansson, Janet K.

    In: I S M E Journal, Vol. 8, No. 7, 2014, p. 1464-1475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  326. Published

    Metagenomic Systems Biology of the Human Microbiome. / Bonde, Ida; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2014. 153 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  327. Published

    Methods for dynamic investigations of surface-attached in vitro bacterial and fungal biofilms.. / Sternberg, Claus; Bjarnsholt, Thomas; Shirtliff, Mark.

    Microbial Biofi lms: Methods and Protocols. ed. / Donelli Gianfranco. Vol. 1147 Springer, 2014. p. 3-22 (Methods in Molecular Biology, Vol. 1147).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  328. Published

    Methods for studying biofilm formation: flow cells and confocal laser scanning microscopy.. / Tolker-Nielsen, Tim; Sternberg, Claus.

    Pseudomonas Methods and Protocols. ed. / Alain Filloux; Juan-Luis Ramos. Vol. 1149 Springer, 2014. p. 615-629 (Methods in Molecular Biology, Vol. 1149).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  329. Published
  330. Published

    Microbial bioreaction process. / Schmidt, Hans Peter (Inventor); Katz, Michael (Inventor); Stenhuus, Bo (Inventor); Förster, Jochen (Inventor).

    IPC No.: US2010203603. Patent No.: WO2008EP59768. Aug 12, 2010.

    Publication: ResearchPatent – Annual report year: 2014

  331. Published

    Microbial production of lysine from sustainable feedstock. / Wang, Zhihao; Grishkova, Maria; Solem, Christian; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  332. Published

    Microbiology: Barriers to the spread of resistance. / Sommer, Morten.

    In: Nature, Vol. 509, 2014, p. 567–568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  333. Published

    Micropeptins from Microcystis sp. collected in Kabul Reservoir, Israel. / Bladt, Tanja Thorskov; Kalifa-Aviv, Sivan; Larsen, Thomas Ostenfeld; Carmeli, Shmuel.

    In: Tetrahedron, Vol. 70, No. 4, 2014, p. 936-943.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  334. Published

    Modeling Cancer Metastasis using Global, Quantitative and Integrative Network Biology. / Schoof, Erwin; Brunak, Søren (Supervisor); Linding, Rune (Main supervisor); Erler, Janine.

    Technical University of Denmark, 2014. 129 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  335. Published

    MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. / Bonde, Mads; Klausen, Michael S.; Anderson, Mads Valdemar; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Nucleic Acids Research, Vol. 12, No. W1, 2014, p. W408-W415.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  336. Published

    Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase. / Maiolica, Alessio; de Medina-Redondo, Maria; Schoof, Erwin; Chaikuad, Apirat; Villa, Fabrizio; Gatti, Marco; Jeganathan, Siva; Lou, Hua Jane; Novy, Karel; Hauri, Simon; Toprak, Umut H.; Herzog, Franz; Meraldi, Patrick; Penengo, Lorenza; Turk, Benjamin E.; Knapp, Stefan; Linding, Rune; Aebersold, Ruedi.

    In: Molecular and Cellular Proteomics, Vol. 13, No. 7, 2014, p. 1724-1740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  337. Published

    Modules, networks and systems medicine for understanding disease and aiding diagnosis. / Gustafsson, Mika; Nestor, Colm E.; Zhang, Huan; Barabasi, Albert-Laszlo; Baranzini, Sergio; Brunak, Søren; Chung, Kian Fan; Federoff, Howard J.; Gavin, Anne-Claude; Meehan, Richard R.; Picotti, Paola; Pujana, Miguel Angel; Rajewsky, Nikolaus; Smith, Kenneth G. C.; Sterk, Peter J.; Villoslada, Pablo; Benson, Mikael.

    In: Genome Medicine, Vol. 6, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  338. Published
  339. Published

    Monitoring programmed cell death of living plant tissues in microfluidics using electrochemical and optical techniques. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Emnéus, Jenny; Dufva, Martin; Finnie, Christine.

    2014. Abstract from Plant Biology Europe FESPB/EPSO 2014, Dublin, Ireland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  340. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage.. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Gerritsen, Bram; Kesmir, Can; Miles, John J.; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Journal of Experimental Medicine, Vol. 211, No. 8, 2014, p. 1601-1610.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  341. Published

    Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Noyan, Kajsa; Svärd, Jenny; Barqasho, Babilonia; Sönnerborg, Anders; Lund, Ole; Nowak, Piotr; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 192, No. 5, 2014, p. 2099-2108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  342. Published

    Multiple chromosomal gene integration for production of pharmaceutical proteins in S. cerevisiae. / Jensen, Malene; Mortensen, Uffe Hasbro; Gunnarsson, Nina; Strucko, Tomas; Baron, Line Due.

    In: New Biotechnology, Vol. 31, No. Supplement, 2014, p. S192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  343. Published

    Multi-stress resistance in Lactococcus lactis is actually escape from purine-induced stress sensitivity. / Ryssel, Mia; Hviid, Anne-Mette Meisner; Dawish, Mohamed S.; Haaber, Jakob; Hammer, Karin; Martinussen, Jan; Kilstrup, Mogens.

    In: Microbiology, Vol. 160, No. 11, 2014, p. 2551-2559.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  344. Published
  345. Published

    Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.. / Clément-Ziza, Mathieu; Marsellach, Francesc X.; Codlin, Sandra; Papadakis, Manos A.; Reinhardt, Susanne; Rodríguez-López, María; Martin, Stuart; Marguerat, Samuel; Schmidt, Alexander; Lee, Eunhye; Workman, Christopher; Bähler, Jürg; Beyer, Andreas.

    In: Molecular Systems Biology, Vol. 10, No. 764, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  346. Published

    Natural mannosylation of HIV-1 gp120 imposes no immunoregulatory effects in primary human plasmacytoid dendritic cells. / Søndergaard, Jonas Nørskov; Vinner, Lasse; Pedersen, Susanne Brix.

    In: Molecular Immunology, Vol. 59, No. 2, 2014, p. 180-187.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  347. Published

    NetFCM: A Semi-Automated Web-Based Method for Flow Cytometry Data Analysis. / Frederiksen, Juliet Wairimu; Buggert, Marcus; Karlsson, Annika C.; Lund, Ole.

    In: Cytometry. Part A, Vol. 85, No. 11, 2014, p. 969-977.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  348. Published

    NetTepi: an integrated method for the prediction of T cell epitopes. / Trolle, Thomas; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 7-8, 2014, p. 449-456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  349. Published

    Neutrophil elastase-mediated increase in airway temperature during inflammation. / Schmidt, Annika; Belaaouaj, Azzaq; Bissinger, Rosi; Koller, Garrit; Malleret, Laurette; D'Orazio, Ciro; Facchinelli, Martino; Schulte-Hubbert, Bernhard; Molinaro, Antonio; Holst, Otto; Hammermann, Jutta; Schniederjans, Monika; Meyer, Keith C.; Pedersen, Søren Damkiær; Piacentini, Giorgio; Assael, Baroukh; Bruce, Kenneth; Häußler, Susanne; LiPuma, John J.; Seelig, Joachim; Worlitzsch, Dieter; Döring, Gerd.

    In: Journal of Cystic Fibrosis, Vol. 13, No. 6, 2014, p. 623-631.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  350. Published

    Nordic mcl2-3 trials: mirna-18b overexpression identifies a mantle cell lymphoma subgroup with poor survival and improves mipi-b prediction of prognosis. / Husby, Sofie; Ralfkiaer, U.; Garde, Christian; Ek, Sara; Kolstad, A.; Jerkeman, M.; Laurell, A.; Raty, R.; Ehinger, M.; Sundstrom, C.; Karjalainen-Lindsberg, M. L.; Delabie, J.; Clasen-Linde, E.; Brown, P. D. N.; Workman, Christopher; Geisler, C. H.; Gronbaek, K.

    In: Haematologica, Vol. 99, No. S1, 2014, p. 503-503.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  351. Published

    Novel and improved yeast cell factories for biosustainable processes. / Workman, Mhairi.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  352. Published

    NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods. / Jensen, Kasper; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: Nucleic Acids Research, Vol. 43, 2014, p. D940-D945.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  353. Published

    Nutritional Systems Biology. / Jensen, Kasper; Panagiotou, Gianni (Supervisor); Kouskoumvekaki, Irene (Main supervisor).

    Technical University of Denmark, 2014. 139 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  354. Published
  355. Published

    Ochratoxin production and taxonomy of the yellow aspergilli (Aspergillus section Circumdati). / Visagie, C.M.; Varga, J.; Houbraken, J.; Meijer, M.; Kocsubé, S.; Yilmaz, N.; Fotedar, R.; Seifert, K.A.; Frisvad, Jens Christian; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 1-61.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  356. Published

    Osteoblastic response to pectin nanocoating on titanium surfaces. / Gurzawska, Katarzyna; Svava, Rikke; Yihua, Yu; Haugshøj, Kenneth Brian; Dirscherl, Kai; Levery, Steven B.; Byg, Inge; Damager, Iben; Weiss Nielsen , Martin ; Jørgensen, Bodil; Jørgensen, Niklas Rye; Gotfredsen, Klaus.

    In: Materials Science and Engineering A: Structural Materials: Properties, Microstructures and Processing, Vol. 43, 2014, p. 117-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  357. E-pub ahead of print

    Oxidative stress response pathways: Fission yeast as archetype. / Papadakis, Manos A.; Workman, Christopher.

    In: Critical Reviews in Microbiology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  358. Published

    Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. / Perry, John R. B.; Day, Felix; Elks, Cathy E.; Sulem, Patrick; Thompson, Deborah J.; Ferreira, Teresa; He, Chunyan; Chasman, Daniel I.; Esko, Toenu; Thorleifsson, Gudmar; Albrecht, Eva; Ang, Wei Q.; Corre, Tanguy; Cousminer, Diana L.; Feenstra, Bjarke; Franceschini, Nora; Ganna, Andrea; Johnson, Andrew D.; Kjellqvist, Sanela; Lunetta, Kathryn L.; McMahon, George; Nolte, Ilja M.; Paternoster, Lavinia; Porcu, Eleonora; Smith, Albert V.; Stolk, Lisette; Teumer, Alexander; Tsernikova, Natalia; Tikkanen, Emmi; Ulivi, Sheila; Wagner, Erin K.; Amin, Najaf; Bierut, Laura J.; Byrne, Enda M.; Hottenga, Jouke-Jan; Koller, Daniel L.; Mangino, Massimo; Pers, Tune Hannes; Yerges-Armstrong, Laura M.; Zhao, Jing Hua; Andrulis, Irene L.; Anton-Culver, Hoda; Atsma, Femke; Bandinelli, Stefania; Beckmann, Matthias W.; Benitez, Javier; Blomqvist, Carl; Bojesen, Stig E.; Bolla, Manjeet K.; Bonanni, Bernardo; Brauch, Hiltrud; Brenner, Hermann; Buring, Julie E.; Chang-Claude, Jenny; Chanock, Stephen; Chen, Jinhui; Chenevix-Trench, Georgia; Collee, J. Margriet; Couch, Fergus J.; Couper, David; Coviello, Andrea D.; Cox, Angela; Czene, Kamila; D'adamo, Adamo Pio; Smith, George Davey; De Vivo, Immaculata; Demerath, Ellen W.; Dennis, Joe; Devilee, Peter; Dieffenbach, Aida K.; Dunning, Alison M.; Eiriksdottir, Gudny; Eriksson, Johan G.; Fasching, Peter A.; Ferrucci, Luigi; Flesch-Janys, Dieter; Flyger, Henrik; Foroud, Tatiana; Franke, Lude; Garcia, Melissa E.; Garcia-Closas, Montserrat; Geller, Frank; de Geus, Eco E. J.; Giles, Graham G.; Gudbjartsson, Daniel F.; Gudnason, Vilmundur; Guenel, Pascal; Guo, Suiqun; Hall, Per; Hamann, Ute; Haring, Robin; Hartman, Catharina A.; Heath, AndrewC; Hofman, Albert; Hooning, Maartje J.; Hopper, John L.; Hu, Frank B.; Hunter, David J.; Karasik, David; Kiel, Douglas P.; Knight, Julia A.; Kosma, Veli-Matti; Kutalik, Zoltan; Lai, Sandra; Lambrechts, Diether; Lindblom, Annika; Maegi, Reedik; Magnusson, Patrik K.; Mannermaa, Arto; Martin, Nicholas G.; Masson, Gisli; McArdle, Patrick F.; McArdle, Wendy L.; Melbye, Mads; Michailidou, Kyriaki; Mihailov, Evelin; Milani, Lili; Milne, Roger L.; Nevanlinna, Heli; Neven, Patrick; Nohr, Ellen A.; Oldehinkel, Albertine J.; Oostra, Ben A.; Palotie, Aarno; Peacock, Munro; Pedersen, Nancy L.; Peterlongo, Paolo; Peto, Julian; Pharoah, Paul D. P.; Postma, Dirkje S.; Pouta, Anneli; Pylkaes, Katri; Radice, Paolo; Ring, Susan; Rivadeneira, Fernando; Robino, Antonietta; Rose, Lynda M.; Rudolph, Anja; Salomaa, Veikko; Sanna, Serena; Schlessinger, David; Schmidt, Marjanka K.; Southey, Mellissa C.; Sovio, Ulla; Stampfer, Meir J.; Stoeckl, Doris; Storniolo, Anna M.; Timpson, Nicholas J.; Tyrer, Jonathan; Visser, Jenny A.; Vollenweider, Peter; Voelzke, Henry; Waeber, Gerard; Waldenberger, Melanie; Wallaschofski, Henri; Wang, Qin; Willemsen, Gonneke; Winqvist, Robert; Wolffenbuttel, Bruce H. R.; Wright, Margaret J.; Boomsma, Dorret I.; Econs, Michael J.; Khaw, Kay-Tee; Loos, Ruth J. F.; McCarthy, Mark I.; Montgomery, Grant W.; Rice, John P.; Streeten, Elizabeth A.; Thorsteinsdottir, Unnur; van Duijn, Cornelia M.; Alizadeh, Behrooz Z.; Bergmann, Sven; Boerwinkle, Eric; Boyd, Heather A.; Crisponi, Laura; Gasparini, Paolo; Gieger, Christian; Harris, Tamara B.; Ingelsson, Erik; Jaervelin, Marjo-Riitta; Kraft, Peter; Lawlor, Debbie; Metspalu, Andres; Pennell, Craig E.; Ridker, Paul M.; Snieder, Harold; Sorensen, Thorkild I. A.; Spector, Tim D.; Strachan, David P.; Uitterlinden, Andre G.; Wareham, Nicholas J.; Widen, Elisabeth; Zygmunt, Marek; Murray, Anna; Easton, Douglas F.; Stefansson, Kari; Murabito, Joanne M.; Ong, Ken K.; Study, Australian Ovarian Canc; Network, GENICA; Study, kConFabt LifeLines Cohort; Consortium, InterAct; Consorti, Early Growth Genetics EGG.

    In: NATURE, Vol. 514, No. 7520, 2014, p. 92-97.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  359. Published
  360. Published

    Penicillium / Penicillia in food production. / Frisvad, Jens Christian.

    Encyclopedia af food microbiology. ed. / C.A. Batt; M.L. Tortorello. Vol. 3 Elsevier Academic Press Inc, 2014. p. 14-18.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  361. Published

    Phenotypic differentiation of species from Aspergillus section Flavi on neutral red desiccated coconut agar. / Atanda, O. O.; Adetunji, M. C.; Ezekiel, C. N.; Houbraken, J.; Frisvad, Jens Christian; Samson, R. A.

    In: World Mycotoxin Journal, Vol. 7, No. 3, 2014, p. 335-344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  362. Published

    Phylogeny, identification and nomenclature of the genus Aspergillus. / Samson, R.A.; Visagie, C.M.; Houbraken, J.; Hong, S. B.; Hubka, V.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Susca, A.; Tanney, J.B.; Varga, J.; Kocsubé, S.; Szigeti, G.; Yaguchi, T.; Frisvad, Jens Christian.

    In: Studies in Mycology, Vol. 78, 2014, p. 141-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  363. Published

    Polyamines are essential for virulence in Salmonella enterica serovar Gallinarum despite evolutionary decay of polyamine biosynthesis genes. / Schroll, Casper; Christensen, Jens P.; Christensen, Henrik; Pors, Susanne E.; Thorndahl, Lotte; Jensen, Peter Ruhdal; Olsen, John E.; Jelsbak, Lotte.

    In: Veterinary Microbiology, Vol. 170, No. 1-2, 2014, p. 144-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  364. Published

    Polyphasic taxonomy of the genus Talaromyces. / Yilmaz, N.; Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Samson, R.A.

    In: Studies in Mycology, Vol. 78, 2014, p. 175-341.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  365. Published
  366. Published

    Potential of volatile compounds produced by fungi to influence sensory quality of coffee beverage. / Iamanaka, B. T.; Teixeira, A. A.; Teixeira, A. R. R.; Vicente, E.; Frisvad, Jens Christian; Taniwaki, M. H.; Bragagnolo, N.

    In: Food Research International, Vol. 64, 2014, p. 166-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  367. Published

    Prediction of resistance development against drug combinations by collateral responses to component drugs.. / Munck, Christian; Gumpert, Heidi; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Science Translational Medicine, Vol. 6, No. 262, 262ra156 , 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  368. Published

    Predictors of neutrophilic airway inflammation in young smokers with asthma. / Westergaard, Christian Grabow; Munck, Christian; Helby, Jens; Porsbjerg, Celeste; Hansen, Lars Henrik; Backer, Vibeke.

    In: Journal of Asthma, Vol. 51, No. 4, 2014, p. 341-347.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  369. Published

    Prehistoric genomes reveal the genetic foundation and cost of horse domestication. / Schubert, Mikkel; Jáónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Auráóélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A. S.; MacHugh, David E.; Kalbfleisch, Ted; MacLeod, James N.; Rubin, Edward M.; Sicheritz-Pontén, Thomas; Andersson, Leif; Hofreiter, Michael; Marques-Bonet, Tomas; Gilbert, M. Thomas P.; Nielsen, Rasmus; Excoffier, Laurent; Willerslev, Eske; Shapiro, Beth; Orlando, Ludovic.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 52, 1416991111, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  370. Published

    Pre‐natal undernutrition and post‐natal overnutrition are associated with permanent changes in hepatic metabolism markers and fatty acid composition in sheep. / Hou, L.; Hellgren, Lars; Kongsted, A. H.; Vaag, A.; Nielsen, M. O.

    In: Acta Physiologica (Print), Vol. 210, No. 2, 2014, p. 317-329.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  371. Published

    Probabilistic Determination of Native State Ensembles of Proteins. / Olsson, Simon; Vögeli, Beat Rolf; Cavalli, Andrea; Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten; Hamelryck, Thomas.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 8, 2014, p. 3484-3491.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  372. Published

    Probe design for expression arrays using OligoWiz. / Wernersson, Rasmus.

    DNA Microarrays for Biomedical Research: Methods and Protocols. ed. / Martin Dufva. Vol. 529 Humana Press, 2014. p. 23-36 (Methods in Molecular Biology, Vol. 529).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2009

  373. Published

    Processing of biowaste for sustainable products in developing countries. / Dantoft, Shruti Harnal; Hansen, Anders Cai Holm; Jensen, Peter Ruhdal.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  374. Published

    Programmed cell death: The life ambition of the barley aleurone layer. / Mark, Christina; Zor, Kinga; Heiskanen, Arto; Dufva, Martin; Emnéus, Jenny; Finnie, Christine.

    2014. Abstract from 1st INPPO World Congress on Plant Proteomics, Hamburg, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  375. Published

    Protein network reconstruction of CHO cell secretory pathway. / Lund, Anne Mathilde; Kaas, Christian Schrøder; Kildegaard, Helene Faustrup; Kristensen, Claus; Andersen, Mikael Rørdam.

    2014. Poster session presented at CHOgenome workshop, Vienna, Austria.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  376. Published

    Protein network reconstruction of CHO cell secretory pathway. / Lund, Anne Mathilde; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2014. Poster session presented at 9th Danish Conference on Biotechnology and Molecular Biology, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2014

  377. Published

    Proteome reference maps of the Lotus japonicus nodule and root. / Dam, Svend Secher; Dyrlund, Thomas F.; Ussatjuk, Anna; Jochimsen, Bjarne; Nielsen, Kasper; Goffard, Nicolas; Ventosa, Miguel; Lorentzen, Andrea; Gupta, Vikas; Andersen, Stig U. ; Enghild, Jan J.; Ronson, Clive W.; Roepstorff, Peter; Stougaard, Jens.

    In: Journal of Proteomics, Vol. 14, 2014, p. 230-240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  378. Published

    Proteomic analysis of cAMP-mediated signaling during differentiation of 3 T3-L1 preadipocytes. / Borkowski, Kamil; Wrzesinski, Krzysztow; Rogowska-Wrzesinska, Adelina; Audouze, Karine Marie Laure; Bakke, Jesse; Petersen, Rasmus Koefoed; Haj, Fawaz G.; Madsen, Lise; Kristiansen, Karsten.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 12, 2014, p. 2096-2107.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  379. Published

    Proteomic Analysis of probiotic Lactobacillus acidophilus NCFM response to oxidative stress. / Celebioglu, Hasan Ufuk; Calderini, Elia; Lahtinen, Sampo J.; Jacobsen, Susanne; Pessione, Enrica; Svensson, Birte.

    2014. Abstract from Annual Conference and Exhibition Functional Foods, Nutraceuticals, Natural Health Products, and Dietary Supplements, Istanbul, Turkey.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  380. Published

    Quality scores for 32,000 genomes. / Land, Miriam L.; Hyatt, Doug; Jun, Se-Ran; Kora, Guruprasad H.; Hauser, Loren J.; Lukjancenko, Oksana; Ussery, David.

    In: Standards in Genomic Sciences, Vol. 9, No. 20, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  381. Published
  382. Published
  383. Published

    Reagent deposition for rapid multiplex pathogen identification in human blood culture samples. / Mogensen, Klaus Bo; Machado, Ana Manuel; Dufva, Martin.

    Proceedings of the Fourth International Workshop on Analytical Miniaturization and NANOtechnologies . 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  384. Published
  385. Published

    Recent insight in α-glucan metabolism in probiotic bacteria. / Møller, Marie Sofie; Goh, Yong Jun; Viborg, Alexander Holm; Andersen, Joakim Mark; Klaenhammer, Todd R.; Svensson, Birte; Abou Hachem, Maher .

    In: Biologia, Vol. 69, No. 6, 2014, p. 713-721.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  386. Published

    Redox activity monitoring in intact barley aleurone cells during gibberellic acid induced programmed cell death. / Zor, Kinga; Mark, Christina; Heiskanen, Arto; Dufva, Martin; Finnie, Christine ; Emnéus, Jenny.

    Proceedings of the 15th International Conference on Electroanalysis. 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  387. Published

    Reducing antibiotic use in marine larviculture by probiotics. / Gram, Lone; D'Alvise, Paul; Grotkjær, Torben; Bentzon-Tilia, Mikkel.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  388. Published

    Removal of the phage-shock protein PspB causes reduction of virulence in Salmonella enterica serovar Typhimurium independently of NRAMP1.. / Wallrodt, Inke; Jelsbak, Lotte; Thomsen, Line E.; Brix, Lena; Lemire, Sebastien; Gautier, Laurent; Nielsen, Dennis S.; Jovanovic, Goran; Buck, Martin; Olsen, John E.

    In: Journal of Medical Microbiology, Vol. 63, No. Pt 6, 2014, p. 788-795.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  389. Published
  390. Published

    RNA-protein interactions: an overview.. / Re, Angela; Joshi, Tejal; Kulberkyte, Eleonora; Morris, Quaid; Workman, Christopher.

    RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods: Springer Protocols. Vol. 1097 2014. p. 491-521 (Methods in Molecular Biology, Vol. 1097).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  391. Published

    Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling. / Tian, Pengfei; Jónsson, Sigurdur Æ.; Ferkinghoff-Borg, Jesper; Krivov, Sergei V.; Lindorff-Larsen, Kresten; Irbäck, Anders; Boomsma, Wouter.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 2, 2014, p. 543-553.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  392. Published

    Science communication in policy making : A qualitative research about the motivation of academic biotech scientists to participate in policy making in Europe. / Coumou, Hilde; van der Werf Kulichova, Z. ; Wehrmann, C.; Osseweijer, P.

    Proceedings of PCST 2014. 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  393. Published
  394. Published

    Secreted single‐stranded DNA is involved in the initial phase of biofilm formation by Neisseria gonorrhoeae. / Zweig, Maria; Schork, Sabine; Koerdt, Andrea; Siewering, Katja; Sternberg, Claus; Thormann, Kai; Albers, Sonja‐Verena; Molin, Søren; Does, Chris, van der.

    In: Environmental Microbiology, Vol. 16, No. 4, 2014, p. 1040-1052.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  395. Published

    Selectivity of the surface binding site (SBS) on barley starch synthase I. / Wilkens, Casper; Cuesta-Seijo, Jose A.; Palcic, Monica; Svensson, Birte.

    In: Biologia, Vol. 69, No. 9, 2014, p. 1118-1121.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  396. Published
  397. Published

    Sequence and comparative analysis of Leuconostoc dairy bacteriophages. / Kot, Witold; Hansen, Lars Henrik; Neve, Horst; Hammer, Karin; Jacobsen, Susanne; Pedersen, Per D.; Sørensen, Søren J.; Heller, Knut J.; Vogensen, Finn K.

    In: International Journal of Food Microbiology, Vol. 176, 2014, p. 29-37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  398. Published

    Silent clusters : speak up!. / Gram, Lone.

    In: Microbial Biotechnology, Vol. 8, No. 1, 2014, p. 13-14.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  399. Published

    Size of quorum sensing communities. / Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Molecular BioSystems, Vol. 10, No. 103, 2014, p. 103-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  400. Published
  401. Published

    Solid‐Phase Synthesis and Biological Evaluation of N‐Dipeptido L‐Homoserine Lactones as Quorum Sensing Activators. / Hansen, Mette Reimert; Le Quement, Sebastian Thordal; Jakobsen, Tim Holm; Skovstrup, Søren; Taboureau, Olivier ; Tolker‐Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: ChemBioChem, Vol. 15, No. 3, 2014, p. 460-465.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  402. Published

    Solonamide B Inhibits Quorum Sensing and Reduces Staphylococcus aureus Mediated Killing of Human Neutrophils. / Nielsen, Anita; Månsson, Maria; Bojer, Martin S.; Gram, Lone; Larsen, Thomas Ostenfeld; Novick, Richard P.; Frees, Dorte; Frøkiær, Hanne; Ingmer, Hanne.

    In: P L o S One, Vol. 9, No. 1, e84992, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  403. Published

    Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms. / Kaas, Rolf Sommer; Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller; Lund, Ole.

    In: PLOS ONE, Vol. 9, No. 8, e104984, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  404. Published

    Speciation with gene flow in equids despite extensive chromosomal plasticity. / Jáónsson, Hákon; Schubert, Mikkel; Seguin-Orlando, Andaine; Ginolhac, Auráóélien; Petersen, Lillian; Fumagalli, Matteo; Albrechtsen, Anders; Petersen, Bent; Korneliussen, Thorfinn S.; Vilstrup, Julia T.; Lear, Teri; Myka, Jennifer Leigh; Lundquist, Judith; Miller, Donald C.; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A. S.; Stagegaard, Julia; Strauss, Gáóéünter; Bertelsen, Mads Frost; Sicheritz-Pontén, Thomas; Antczak, Douglas F.; Bailey, Ernest; Nielsen, Rasmus; Willerslev, Eske; Orlando, Ludovic.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 52, 2014, p. 18655-18660.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  405. Published

    Stability of the intra- and extracellular toxins of Prymnesium parvum using a microalgal bioassay. / Blossom, Hannah Eva; Andersen, Nikolaj Gedsted; Rasmussen, Silas Anselm; Hansen, Per Juel.

    In: Harmful Algae, Vol. 32, 2014, p. 11-21.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  406. Published

    Staphylococcus aureus Alters Growth Activity, Autolysis, and Antibiotic Tolerance in a Human Host-Adapted Pseudomonas aeruginosa Lineage.. / Frydenlund Michelsen, Charlotte; Christensen, Anne-Mette; Bojer, Martin Saxtorph; Høiby, Niels; Ingmer, Hanne; Jelsbak, Lars.

    In: Journal of Bacteriology, Vol. 196, No. 22, 2014, p. 3903-3911.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  407. Published

    Starter Cultures: Uses in the Food Industry.. / Hansen, Egon Bech.

    Encyclopedia of Food Microbiology. Vol. 3 Elsevier Science, 2014. p. 529-534.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  408. Published
  409. Published

    Structure Revision of N-Mercapto-4-formylcarbostyril Produced by Pseudomonas fluorescens G308 to 2-(2-Hydroxyphenyl)thiazole-4-carbaldehyde [aeruginaldehyde]. / Guillemyn, Karel; Ballet, Steven; Ye, Lumeng; Cornelis, Pierre; Hammerich, Ole; Christophersen, Carsten.

    In: Natural Product Communications, Vol. 9, No. 6, 2014, p. 789-794.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  410. Published

    Studies on genetic diversity of bovine viral diarrhea viruses in Danish cattle herds. / Nagy, Abdou; Fahnøe, Ulrik; Rasmussen, Thomas Bruun; Uttenthal, Åse.

    In: Virus Genes, Vol. 48, No. 2, 2014, p. 376-380.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  411. Published

    Surfactins in Natto: The Surfactin Production Capacity of the Starter Strains and the Actual Surfactin Contents in the Products. / Juola, Mari; Kinnunen, Kristiina; Nielsen, Kristian Fog; von Wright, Atte.

    In: Journal of Food Protection, Vol. 77, No. 12, 2014, p. 2139-2143.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  412. Published

    Synbiotic Lactobacillus acidophilus NCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial. / van Zanten, Gabriella Christina; Krych, Lukasz; Roytio, Henna; Forssten, Sofia; Lahtinen, Sampo J.; Abu Al-Soud, Waleed; Sørensen, Søren; Svensson, Birte; Jespersen, Lene; Jakobsen, Mogens Havsteen.

    In: F E M S Microbiology Ecology, Vol. 90, No. 1, 2014, p. 225-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  413. Published

    Synthesis and bioactivity of analogues of the marine antibiotic tropodithietic acid. / Rabe, Patrick; Klapschinski, Tim A.; Brock, Nelson L.; Citron, Christian A.; D'Alvise, Paul; Gram, Lone; Dickschat, Jeroen S.

    In: Beilstein Journal of Organic Chemistry, Vol. 10, 2014, p. 1796-1801.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  414. Published

    Synthetic Plasmid Biology. / Bentzon-Tilia, Mikkel; Sørensen, Søren Johannes; Hansen, Lars Hestbjerg.

    Molecular Life Sciences: An Encyclopedic Reference. Springer, 2014.

    Publication: Research - peer-reviewEncyclopedia chapter – Annual report year: 2014

  415. Published
  416. Published

    Synthetic Promoter Library for Modulation of Actinorhodin Production in Streptomyces coelicolor A3(2). / Sohoni, Sujata Vijay; Fazio, Alessandro; Workman, Christopher; Mijakovic, Ivan; Eliasson Lantz, Anna.

    In: PLOS ONE, Vol. 9, No. 6, e99701, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  417. Published

    Systematic Evaluation of the Prognostic Impact and Intratumour Heterogeneity of Clear Cell Renal Cell Carcinoma Biomarkers. / Gulati, Sakshi; Martinez, Pierre; Joshi, Tejal; Birkbak, Nicolai Juul; Santos, Claudio R.; Rowan, Andrew J.; Pickering, Lisa; Gore, Martin; Larkin, James; Szallasi, Zoltan Imre; Bates, Paul A.; Swanton, Charles; Gerlinger, Marco.

    In: European Urology, Vol. 66, No. 5, 2014, p. 936-948.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  418. Published

    Targeting the genetic complexity within adapting RNA virus populations. / Fahnøe, Ulrik; Pedersen, Anders Gorm (Supervisor); Rasmussen, Thomas Bruun (Main supervisor).

    Technical University of Denmark, 2014. 160 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  419. Published

    T-bet and Eomes Are Differentially Linked to the Exhausted Phenotype of CD8+T Cells in HIV Infection. / Buggert, Marcus; Tauriainen, Johanna; Yamamoto, Takuya; Frederiksen, Juliet Wairimu; Ivarsson, Martin A.; Michaelsson, Jakob; Lund, Ole; Hejdeman, Bo; Jansson, Marianne; Sonnerborg, Anders; Koup, Richard A.; Betts, Michael R.; Karlsson, Annika C.

    In: P L o S Pathogens, Vol. 10, No. 7, e1004251, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  420. Published

    Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients. / Jensen, Anders Boeck; Moseley, Pope; Oprea, Tudor; Ellesøe, Sabrina Gade; Eriksson, Robert; Schmock, Henriette; Jensen, Peter Bjødstrup; Jensen, Lars Juhl; Brunak, Søren.

    In: Nature Communications, Vol. 5, 4022, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  421. Published

    The Chemistry of Griseofulvin. / Petersen, Asger Bjørn; Rønnest, Mads Holger; Larsen, Thomas Ostenfeld; Clausen, Mads Hartvig.

    In: Chemical Reviews, Vol. 114, No. 24, 2014, p. 12088-12107.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  422. Published

    The comparison of thrombocytosis and platelet-lymphocyte ratio as potential prognostic markers in colorectal cancer. / Baranyai, Zsolt; Krzystanek, Marcin; Josa, Valeria; Dede, Kristof; Ágoston, E.; Szasz, A. Marcell; Sinko, Daniel; Szarvas, Viktor; Salamon, Ferenc; Eklund, Aron Charles; Szallasi, Zoltan Imre; Jakab, Ferenc.

    In: Thrombosis and Haemostasis, Vol. 111, No. 3, 2014, p. 483-490.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  423. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from Power of Programming Conference 2014, Munich, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  424. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from The 11th Biennial ISSFAL Congress 2014, Stockholm, Sweden.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  425. Published

    The efflux pump MlcE from the Penicillium solitum compactin biosynthetic gene cluster increases Saccharomyces cerevisiae resistance to natural statins. / Ley, Ana; Frandsen, Rasmus John Normand.

    2014. Abstract from Yeast Genetics Meeting, Seattle, Washington, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  426. Published

    The evolutionary appearance of non-cyanogenic hydroxynitrile glucosides in the Lotus genus is accompanied by the substrate specialization of paralogous beta-glucosidases resulting from a crucial amino acid substitution. / Lai, Daniela; Abou Hachem, Maher ; Robson, Fran; Olsen, Carl Erik; Wang, Trevor L.; Møller, Birger Lindberg; Takos, Adam M.; Rook, Fred.

    In: Plant Journal, Vol. 79, No. 2, 2014, p. 299-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  427. Published

    The genetic prehistory of the New World Arctic. / Raghavan, Maanasa; DeGiorgio, Michael; Albrechtsen, Anders; Moltke, Ida; Skoglund, Pontus; Korneliussen, Thorfinn S.; Grønnow, Bjarne; Appelt, Martin; Gulløv, Hans Christian; Friesen, T. Max; Fitzhugh, William; Malmström, Helena; Rasmussen, Simon; Olsen, Jesper; Melchior, Linea; Fuller, Benjamin T.; Fahrni, Simon M.; Stafford, Thomas; Grimes, Vaughan; Renouf, M. A. Priscilla; Cybulski, Jerome; Lynnerup, Niels; Lahr, Marta Mirazon; Britton, Kate; Knecht, Rick; Arneborg, Jette; Metspalu, Mait; Cornejo, Omar E.; Malaspinas, Anna-Sapfo; Wang, Yong; Rasmussen, Morten; Raghavan, Vibha; Hansen, Thomas V. O.; Khusnutdinova, Elza; Pierre, Tracey; Dneprovsky, Kirill; Andreasen, Claus; Lange, Hans; Hayes, M. Geoffrey; Coltrain, Joan; Spitsyn, Victor A.; Gotherstrom, Anders; Orlando, Ludovic; Kivisild, Toomas; Villems, Richard; Crawford, Michael H.; Nielsen, Finn C.; Dissing, Jørgen; Heinemeier, Jan; Meldgaard, Morten; Bustamante, Carlos; O'Rourke, Dennis H.; Jakobsson, Mattias; Gilbert, M. Thomas P.; Nielsen, Rasmus; Willerslev, Eske.

    In: Science, Vol. 345, No. 6200, 1255832, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  428. Published

    The genome of a Late Pleistocene human from a Clovis burial site in western Montana.. / Rasmussen, Morten; Anzick, Sarah L.; Waters, Michael R; Skoglund, Pontus; DeGiorgio, Michael; Stafford, Thomas W, Jr; Rasmussen, Simon; Moltke, Ida; Albrechtsen, Anders; Doyle, Shane M; Poznik, G David; Gudmundsdottir, Valborg; Yadav, Rachita; Malaspinas, Anna Sapfo; White, Samuel Stockton, 5th; Allentoft, Morten Erik; Cornejo, Omar E.; Tambets, Kristiina; Eriksson, Anders; Heintzman, Peter D.; Karmin, Monika; Korneliussen, Thorfinn Sand; Meltzer, David J.; Pierre, Tracey Lynn; Stenderup, Jesper; Saag, Lauri; Warmuth, Vera M; Lopes, Margarida C; Malhi, Ripan S.; Brunak, Søren; Sicheritz-Pontén, Thomas; Barnes, Ian; Collins, Matthew; Orlando, Ludovic Antoine Alexandre; Balloux, Francois; Manica, Andrea; Gupta, Ramneek; Metspalu, Mait; Bustamante, Carlos D; Jakobsson, Mattias; Nielsen, Rasmus; Willerslev, Eske.

    In: Nature, Vol. 506, No. 7487, 2014, p. 225-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  429. Published

    The Genome of the Chicken DT40 Bursal Lymphoma Cell Line. / Molnar, Janos; Poti, Adam; Pipek, Orsolya; Krzystanek, Marcin; Kanu, Nnennaya; Swanton, Charles; Tusnady, Gabor E.; Szallasi, Zoltan Imre; Csabai, Istvan; Szuets, David.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 4, No. 11, 2014, p. 2231-2240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  430. Published

    The Genome of the Generalist Plant Pathogen Fusarium avenaceum Is Enriched with Genes Involved in Redox, Signaling and Secondary Metabolism.. / Lysøe, Erik; Harris, Linda J.; Walkowiak, Sean; Subramaniam, Rajagopal; Divon, Hege H.; Riiser, Even S.; Llorens, Carlos; Gabaldón, Toni; Kistler, H. Corby; Jonkers, Wilfried; Kolseth, Anna-Karin; Nielsen, Kristian Fog; Thrane, Ulf; Frandsen, Rasmus John Normand.

    In: P L o S One, Vol. 9, No. 11, e112703, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  431. Published

    The Good, the Bad and the Deadly : Characterisation of bacteria through DNA analysis. / Cosentino, Salvatore; Larsen, Mette Voldby (Main supervisor); Lund, Ole (Supervisor).

    Technical University of Denmark, 2014. 89 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  432. Published

    The Identification and Validation of Novel Small Proteins in Pseudomonas Putida KT-2440. / Yang, Xiaochen; Long, Katherine.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  433. Published
  434. Published

    The microbiome of New World vultures. / Roggenbuck, Michael; Schnell, Ida Baerholm; Blom, Nikolaj; Bælum, Jacob; Bertelsen, Mads Frost; Sicheritz-Pontén, Thomas; Sørensen, Søren Johannes; Gilbert, M. Thomas P.; Graves, Gary R.; Hansen, Lars Henrik.

    In: Nature Communications, Vol. 5, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  435. Published
  436. Published

    The role of ClpP, RpoS and CsrA in growth and filament formation of Salmonella enterica serovar Typhimurium at low temperature. / Knudsen, Gitte Maegaard; Nielsen, Maj-Britt; Thomsen, Line Elnif; Aabo, Søren; Rychlik, Ivan; Olsen, John Elmerdahl.

    In: B M C Microbiology, Vol. 14, No. 1, 208, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  437. Published

    The Role of Extracellular Matrix Quality in Pulmonary Fibrosis. / Kristensen, Jacob Hull; Karsdal, Morten Asser; Genovese, Federica; Johnson, Simon; Svensson, Birte; Jacobsen, Susanne; Hägglund, Per; Leeming, Diana Julie.

    In: Respiration (English Edition), Vol. 88, No. 6, 2014, p. 487-499.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  438. Published

    The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313. / Herrero-Fresno, Ana; Wallrodt, Inke; Leekitcharoenphon, Pimlapas; Olsen, John Elmerdahl; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: PLOS ONE, Vol. 9, No. 1, e84566, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  439. Published

    The transcriptome of corona radiata cells from individual MII oocytes that after ICSI developed to embryos selected for transfer: PCOS women compared to healthy women. / Wissing, Marie Louise ; Sonne, Si Brask; Westergaard, David; Nguyen Do, Khoa; Belling, Kirstine C.; Høst, Thomas ; Mikkelsen, Anne Lis .

    In: Journal of Ovarian Research, Vol. 7, No. 110, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  440. Published

    Tolerance of Whole-Genome Doubling Propagates Chromosomal Instability and Accelerates Cancer Genome Evolution. / Dewhurst, Sally M.; McGranahan, Nicholas; Burrell, Rebecca A.; Rowan, Andrew J.; Grönroos, Eva; Endesfelder, David; Joshi, Tejal; Mouradov, Dmitri; Gibbs, Peter; Ward, Robyn L.; Hawkins, Nicholas J.; Szallasi, Zoltan Imre; Sieber, Oliver M.; Swanton, Charles.

    In: Cancer Discovery, Vol. 4, No. 2, 2014, p. 175-185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  441. Published

    Tolerance of yeast biofilm cells towards systemic antifungals. / Bojsen, Rasmus Kenneth; Folkesson, Sven Anders (Main supervisor); Regenberg, Birgitte (Supervisor).

    Technical University of Denmark, 2014. 111 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  442. Published

    Toward genome-scale models of the Chinese hamster ovary cells: incentives, status and perspectives. / Kaas, Christian Schrøder; Fan, Yuzhou; Weilguny, Dietmar; Kristensen, Claus; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    In: Pharmaceutical Bioprocessing, Vol. 2, No. 5, 2014, p. 437-448.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  443. Published
  444. Published
  445. Published

    Tracking Genomic Cancer Evolution for Precision Medicine: The Lung TRACERx Study. / Jamal-Hanjani, Mariam; Hackshaw, Alan; Ngai, Yenting; Shaw, Jacqueline; Dive, Caroline; Quezada, Sergio; Middleton, Gary; de Bruin, Elza; Le Quesne, John; Shafi, Seema; Falzon, Mary; Horswell, Stuart; Blackhall, Fiona; Khan, Iftekhar; Janes, Sam; Nicolson, Marianne; Lawrence, David; Forster, Martin; Fennell, Dean; Lee, Siow-Ming; Lester, Jason; Kerr, Keith; Muller, Salli; Iles, Natasha; Smith, Sean; Murugaesu, Nirupa; Mitter, Richard; Salm, Max; Stuart, Aengus; Matthews, Nik; Adams, Haydn; Ahmad, Tanya; Attanoos, Richard; Bennett, Jonathan; Birkbak, Nicolai Juul; Booton, Richard; Brady, Ged; Buchan, Keith; Capitano, Arrigo; Chetty, Mahendran; Cobbold, Mark; Crosbie, Philip; Davies, Helen; Denison, Alan; Djearman, Madhav; Goldman, Jacki; Haswell, Tom; Joseph, Leena; Kornaszewska, Malgorzata; Krebs, Matthew; Langman, Gerald; MacKenzie, Mairead; Millar, Joy; Morgan, Bruno; Naidu, Babu; Nonaka, Daisuke; Peggs, Karl; Pritchard, Catrin; Remmen, Hardy; Rowan, Andrew; Shah, Rajesh; Smith, Elaine; Summers, Yvonne; Taylor, Magali; Veeriah, Selvaraju; Waller, David; Wilcox, Ben; Wilcox, Maggie; Woolhouse, Ian; McGranahan, Nicholas; Swanton, Charles.

    In: P L o S Biology, Vol. 12, No. 7, e1001906, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  446. Published

    Transforming Lactococcus lactis into a microbial cell factory. / Petersen, Kia Vest; Solem, Christian (Supervisor); Martinussen, Jan (Supervisor); Jensen, Peter Ruhdal (Supervisor).

    Department of Systems Biology, DTU, 2014. 124 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  447. Published
  448. Published

    Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. / Malaspinas, Anna-Sapfo; Lao, Oscar; Schroeder, Hannes; Rasmussen, Morten; Raghavan, Maanasa; Moltke, Ida; Campos, Paula F.; Sagredo, Francisca Santana; Rasmussen, Simon; Gonçalves, Vanessa F.; Albrechtsen, Anders; Allentoft, Morten E.; Stenderup, Jesper; Moreno-Mayar, J. Victor; Brunak, Søren; Sicheritz-Pontén, Thomas; Orlando, Ludovic; Nielsen, Rasmus; Heinemeier, Jan; Olsen, Jesper; Willerslev, Eske.

    In: Current Biology, Vol. 24, No. 21, 2014, p. R1035-R1037.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  449. Published

    Two randomized cross-over trials assessing the impact of dietary gluten or wholegrain on the gut microbiome and host metabolic health. / Ibrügger, Sabine; Gøbel, Rikke Juul; Vestergaard, Henrik; Licht, Tine Rask; Frøkiær, Hanne; Linneberg, Allan René; Hansen, Torben; Gupta, Ramneek; Pedersen, Oluf Borbye; Bredal, Mette ; Lauritzen, Lotte.

    In: Journal of Clinical Trials, Vol. 4, No. 4, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  450. Published

    Uncovering the Peptide-Binding Specificities of HLA-C: A General Strategy To Determine the Specificity of Any MHC Class I Molecule. / Rasmussen, Michael; Harndahl, Mikkel; Stryhn, Anette; Boucherma, Rachid; Nielsen, Lise Lotte; Lemonnier, François A.; Nielsen, Morten; Buus, Søren.

    In: Journal of Immunology, Vol. 193, No. 10, 2014, p. 4790-4802.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  451. Published

    Unraveling cryptic chemistry in black aspergilli. / Petersen, Lene Maj; Frisvad, Jens Christian; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 80, No. 10, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  452. Published

    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. / Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.; Metspalu, Mait; Albrechtsen, Anders; Moltke, Ida; Rasmussen, Simon; Stafford jr., Thomas; Orlando, Ludovic Antoine Alexandre; Metspalu, Ene; Karmin, Monika; Tambets, Kristiina; Rootsi, Siiri; Mägi, Reedik; Campos, Paula; Balanovska, Elena; Balanovsky, Oleg; Khusnutdinova, Elza; Litvinov, Sergey; Osipova, Ludmila P; Fedorova, Sardana A; Voevoda, Mikhail I; Degiorgio, Michael; Sicheritz-Pontén, Thomas; Brunak, Søren; Demeshchenko, Svetlana; Kivisild, Toomas; Villems, Richard; Nielsen, Rasmus; Jakobsson, Mattias; Willerslev, Eske.

    In: Nature, Vol. 505, No. 7481, 2014, p. 87–91.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  453. Published

    Use of "one-pot, mix-and-read" peptide-MHC class I tetramers and predictive algorithms to improve detection of cytotoxic T lymphocyte responses in cattle. / Svitek, Nicholas; Hansen, Andreas Martin; Steinaa, Lucilla; Saya, Rosemary; Awino, Elias; Nielsen, Morten; Buus, Søren; Nene, Vishvanath.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  454. Published

    Vibrio chromosome-specific families. / Lukjancenko, Oksana; Ussery, David.

    In: Frontiers in Microbiology, Vol. 5, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  455. Published

    Vibriophages and Their Interactions with the Fish Pathogen Vibrio anguillarum.. / Tan, Demeng; Gram, Lone; Middelboe, Mathias.

    In: Applied and Environmental Microbiology, Vol. 80, No. 10, 2014, p. 3128-3140.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  456. Published

    Whole-genome analyses resolve early branches in the tree of life of modern birds. / Sicheritz-Pontén, Thomas; Li, Cai; Li, Bo; Munch, Kasper ; Schierup, Mikkel H; Bertelsen, Mads Frost ; Fjeldsa, Jon ; Jønsson, Knud Andreas; Wang, Jun; Willerslev, Eske; Petersen, Bent.

    In: Science, Vol. 346, No. 6215, 2014, p. 1320-1331.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  457. Published

    Whole Genome Epidemiological Typing of Salmonella. / Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller (Main supervisor); Lund, Ole (Supervisor); Ussery, David (Supervisor).

    National Food Institute, 2014. 112 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  458. Published
  459. Published

    α-Amylase: an enzyme specificity found in various families of glycoside hydrolases. / Janeček, Štefan; Svensson, Birte; MacGregor, E. Ann.

    In: Cellular and Molecular Life Sciences, Vol. 71, No. 7, 2014, p. 1149-1170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  460. 2013
  461. Published

    The causes and consequences of antibiotic resistance evolution in microbial pathogens. / Jochumsen, Nicholas; Folkesson, Sven Anders (Supervisor); Molin, Søren (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2013. 111 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  462. Published

    31P gain of chromosomal region 15q26 cause increased expression of blm and fanci, and is associated with sensitivity to platinum chemotherapy in triple negative breast cancer. / Birkbak, Nicolai Juul; Li, Y.; Bowman-Collin, C.; Iglehart, J.D.; Silver, D.; Wang, Z.C.; Szallasi, Zoltan Imre; Richardson, A.

    In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  463. Published
  464. Published

    A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night. / Ruzanski, Christian; Smirnova, Julia; Rejzek, Martin; Cockburn, Darrell; Pedersen, Henriette L.; Pike, Marilyn; Willats, William George Tycho; Svensson, Birte; Steup, Martin; Ebenhöh, Oliver; Smith, Alison M.; Field, Robert A.

    In: Journal of Biological Chemistry, Vol. 288, No. 40, 2013, p. 2028581-28598.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  465. Published
  466. Published

    A computational approach to chemical etiologies of diabetes.. / Audouze, Karine Marie Laure; Brunak, Søren; Grandjean, Philippe.

    In: Scientific Reports, Vol. 3, 2013, p. 2712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  467. Published
  468. Published

    Adaptive Evolution of Escherichia coli to an α-Peptide/β-Peptoid Peptidomimetic Induces Stable Resistance.. / Hein-Kristensen, Line; Franzyk, Henrik; Holch, Anne; Gram, Lone.

    In: PloS one., Vol. 8, No. 9, e73620, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  469. Published

    Adhesion and Proteome Analyses of Lactobacillus acidophilus NCFM grown with the potential Prebiotic Raffinose. / Celebioglu, Hasan Ufuk; Hansen, Morten Ejby; Majumder, Avishek; Dabene, Valentina; Legaard, Camilla Bergholz; Havmøller, Ingeborg Lund; Thorsen, K.; Lahtinen, Sampo J.; Abou Hachem, Maher ; Jacobsen, Susanne; Svensson, Birte.

    Proceedings of the International Scientific Conference on Probiotics and Prebiotics. 2013.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  470. Published

    Adhesion of human and animal escherichia coli strains in association with their virulence-associated genes and phylogenetic origins. / Fr̈mmel, Ulrike; R̈diger, Stefan; B̈hm, Alexander; Nitschke, J̈rg; Groß, Julia; Roggenbuck, Dirk; Schr̈der, Christian; Schierack, Peter; Lehmann, Werner; Roggenbuck, Dirk; Zinke, Olaf; Ansorge, Hermann; Vogel, Steffen; Klemm, Per; Wex, Thomas; Wieler, Lothar H.

    In: Applied and Environmental Microbiology, Vol. 79, No. 19, 2013, p. 5814-5829.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  471. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, C.P.; Berentzen, T.L.; Østergaard, J.N.; Dahm, C.C.; Hellgren, Lars; Schmidt, E.B.; Tjønneland, A.; Sørensen, T.I.A.; Overvad, K.; Jakobsen, M.U.

    2013. Abstract from European Congress on Obesity 2013, Liverpool, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  472. Published
  473. Published

    Alpha-amylase - an enzyme present in various sequence-based glycoside hydrolase families. / Janecek, S.; Svensson, Birte; MacGregor, E. Ann.

    In: F E B S Journal, Vol. 280, 2013, p. 546-546.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  474. Published

    A Mild Method for Regioselective Labeling of Aromatics with Radioactive Iodine. / Rønnest, Mads Holger; Nissen, Felix; Pedersen, Palle Jacob; Larsen, Thomas Ostenfeld; Mier, Walter; Clausen, Mads Hartvig.

    In: European Journal of Organic Chemistry, Vol. 2013, No. 19, 2013, p. 3970-3973.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  475. Published

    Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes.. / Bohlin, Jon; Brynildsrud, Ola Brønstad; Vesth, Tammi Camilla; Skjerve, Eystein; Ussery, David.

    In: PLoS ONE, Vol. 8, No. 7, e69878, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  476. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, M. Thomas P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    The nature of parasitism: Joint Spring Symposium 2013, Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. 2013. p. 8.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  477. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next-generation-sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Thomas, M.; Gilbert, P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    In: Tropical Medicine & International Health, Vol. 18, No. Supplement 1 , 2013, p. 67-67.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  478. Published

    An exoproteome approach to monitor safety of a cheese-isolated Lactococcus lactis. / Genovese, Federica; Coïsson, Jean Daniel; Majumder, Avishek; Pessione, Alessandro; Svensson, Birte; Jacobsen, Susanne; Pessione, Enrica.

    In: Food Research International, Vol. 54, No. 1, 2013, p. 1072-1079.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  479. Published

    A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk. / Blair, David R.; Lyttle, Christopher S.; Mortensen, Jonathan M.; Bearden, Charles F.; Jensen, Anders Boeck; Khiabanian, Hossein; Melamed, Rachel; Rabadan, Raul; Bernstam, Elmer V.; Brunak, Søren; Jensen, Lars Juhl; Nicolae, Dan; Shah, Nigam H.; Grossman, Robert L.; Cox, Nancy J.; White, Kevin P.; Rzhetsky, Andrey.

    In: Cell, Vol. 155, No. 1, 2013, p. 70-80.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  480. Published

    A Novel Domain Cassette Identifies Plasmodium falciparum PfEMP1 Proteins Binding ICAM-1 and Is a Target of Cross-Reactive, Adhesion-Inhibitory Antibodies. / Bengtsson, Anja; Jørgensen, Louise; Rask, Thomas Salhøj; Olsen, Rebecca W.; Andersen, Marianne A.; Turner, Louise; Theander, Thor G.; Hviid, Lars; Higgins, Matthew K.; Craig, Alister; Brown, Alan; Jensen, Anja T. R.

    In: Journal of Immunology, Vol. 190, No. 1, 2013, p. 240-249.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  481. Published
  482. Published
  483. Published

    Application of proteomics for improving crop protection/artificial regulation. / Komatsu, Setsuko; Mock, Hans-Peter; Yang, Pingfang; Svensson, Birte.

    In: Frontiers in Plant Science, Vol. 4, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  484. Published

    Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.

    Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  485. Published
  486. Published

    Arabidopsis thaliana AMY3 Is a Unique Redox-regulated Chloroplastic α-Amylase. / Seung, David; Thalmann, Matthias; Sparla, Francesca; Abou Hachem, Maher ; Lee, Sang Kyu; Issakidis-Bourguet, Emmanuelle; Svensson, Birte; Zeeman, Samuel C.; Santelia, Diana.

    In: Journal of Biological Chemistry, Vol. 288, No. 47, 2013, p. 33620-33633.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  487. Published
  488. Published

    A snapshot into the metabolism of isomalto-oligosaccharides in probiotic bacteria. / Abou Hachem, Maher ; Møller, Marie Sofie; Andersen, Joakim Mark; Fredslund, Folmer; Majumder, Avishek; Nakai, Hiroyuki; Leggio, Leila lo; Goh, Yong-Jun ; Barrangou, R.; Klaenhammer, Todd R.; Svensson, Birte.

    In: Journal of Applied Glycoscience, Vol. 60, No. 2, 2013, p. 95-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  489. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.. / Jensen, Michael Krogh; Lindemose, Søren; De Masi, Federico; Reimer, Julia J; Nielsen, Michael; Perera, Venura; Workman, Christopher; Turck, Franziska; Grant, Murray R; Mundy, John; Petersen, Morten; Skriver, Karen.

    In: FEBS Open Bio, Vol. 3, 2013, p. 321-327.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  490. Published

    Ataxia, Dementia, and Hypogonadotropism Caused by Disordered Ubiquitination. / Margolin, David H.; Kousi, Maria; Chan, Yee-Ming; Lim, Elaine T.; Schmahmann, Jeremy D.; Hadjivassiliou, Marios; Hall, Janet E.; Adam, Ibrahim; Dwyer, Andrew; Plummer, Lacey; Aldrin, Stephanie V.; O'Rourke, Julia; Kirby, Andrew; Hansen, Kasper Lage; Milunsky, Aubrey; Milunsky, Jeff M.; Chan, Jennifer; Hedley-Whyte, E. Tessa; Daly, Mark J.; Katsanis, Nicholas; Seminara, Stephanie B.

    In: New England Journal of Medicine, Vol. 368, No. 21, 2013, p. 1992-2003.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  491. Published

    A Unified Model of the GABA(A) Receptor Comprising Agonist and Benzodiazepine Binding Sites. / Kongsbak, Kristine Grønning; Bergmann, Rikke; Sørensen, Pernille Louise; Sander, Tommy; Balle, Thomas.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e52323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  492. Published

    A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study. / Eijsden, Rudy G. E. van; Stassen, Catherine; Daenen, Luk; Mulders, Sebastiaan E. Van; Bapat, Prashant Madhusudhan; Siewers, Verena; Goossens, Katty V. Y.; Nielsen, Jens; Delvaux, Freddy R.; Hummelen, Paul Van; Devreese, Bart; Willaert, Ronnie G.

    In: Biotechnology Letters, Vol. 35, No. 6, 2013, p. 891-900.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  493. Published

    A validated system for ligation-free USER™ -based assembly of expression vectors for mammalian cell engineering. / Lund, Anne Mathilde; Kildegaard, Helene Faustrup; Hansen, Bjarne Gram; Holm, Dorte Koefoed; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    2013. Poster session presented at 23rd ESACT meeting, Lille, France.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  494. Published

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food. / Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.; Berner, T. S.; Nielsen, Kristian Fog; Adimpong, David Bichala; Diawara, B.; Ouedraogo, G.A.; Jakobsen, M.; Thorsen, L.

    In: Journal of Applied Microbiology, Vol. 115, No. 1, 2013, p. 133-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  495. Published

    Bacterial natural transformation by highly fragmented and damaged DNA.. / Overballe-Petersen, Søren; Harms, Klaus; Orlando, Ludovic Antoine Alexandre; Mayar, J. Victor Moreno; Rasmussen, Simon; Dahl, Tais Wittchen; Rosing, Minik Thorleif; Poole, Anthony M; Sicheritz-Pontén, Thomas; Brunak, Søren; Inselmann, Sabrina; de Vries, Johann; Wackernagel, Wilfried; Pybus, Oliver G; Nielsen, Rasmus; Johnsen, Pål Jarle; Nielsen, Kaare Magne; Willerslev, Eske.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 49, 2013, p. 19860-19865.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  496. Published

    Biasogram: visualization of confounding technical bias in gene expression data.. / Krzystanek, Marcin; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e61872.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  497. Published

    Binding of the N-Terminal Domain of the Lactococcal Bacteriophage TP901-1 CI Repressor to Its Target DNA: A Crystallography, Small Angle Scattering, and Nuclear Magnetic Resonance Study. / Frandsen, Kristian Erik Høpfner; Rasmussen, Kim K.; Jensen, Malene Ringkjøbing; Hammer, Karin; Pedersen, Margit; Poulsen, Jens-Christian Navarro; Arleth, Lise; Lo Leggio, Leila.

    In: Biochemistry, Vol. 52, No. 39, 2013, p. 6892-6904.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  498. Published
  499. Published
  500. Published

    Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.

    Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  501. Published

    Bioprospecting and Functional Analysis of Neglected Environments. / Vogt, Josef Korbinian; Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2013. 150 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  502. Published

    Biotribological properties of bovine submaxillary mucin (BSM) at the hydrophobic interface. / Madsen, Jan Busk; Nikogeorgos, Nikolaos; Abou Hachem, Maher ; Svensson, Birte; Lee, Seunghwan.

    In: European Cells & Materials, Vol. 26, No. Suppl. 6, 2013, p. 111.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  503. Published

    BlockLogo: Visualization of peptide and sequence motif conservation. / Olsen, Lars Rønn; Kudahl, Ulrich Johan; Simon, Christian; Sun, Jing; Schönbach, Christian; Reinherz, Ellis L.; Zhang, Guang Lan; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 400-401, 2013, p. 37-44.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

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