Department of Systems Biology

  1. 2015
  2. E-pub ahead of print
  3. E-pub ahead of print

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways.. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Accepted/In press

    Acylcarnitine plasma levels suggest incomplete mitochondrial fatty acid oxidation in young, healthy men with low birth weight. / Ribel-Madsen, Amalie; Ribel-Madsen, Rasmus; Brøns, Charlotte; B. Newgard, Christopher; Vaag, Allan; Hellgren, Lars.

    2015. Abstract from 28th Nordic Lipid Symposium, Reykjavik, Iceland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  5. Published
  6. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 1, 2015, p. 194.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Amino acid and glucose metabolism in fed-batch CHO cell culture affects antibody production and glycosylation. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering, Vol. 112, No. 3, 2015, p. 521-535.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Accepted/In press

    A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Lund, Anne Mathilde; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Baycin-Hizal, Deniz; Betenbaugh, Michael J.; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published
  11. Published

    A novel approach for studying programmed cell death in living plant tissues. / Mark, Christina; Dufva, Martin (Supervisor); Finnie, Christine (Supervisor).

    Kgs. Lyngby : Technical University of Denmark (DTU), 2015. 140 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  12. Published

    A novel common variant in DCST2 is associated with length in early life and height in adulthood. / van der Valk, Ralf J.P.; Kreiner-Møller, Eskil; Kooijman, Marjolein N.; Guxens, Mònica; Stergiakouli, Evangelia; Sääf, Annika; Bradfield, Jonathan P.; Geller, Frank; Hayes, M. Geoffrey; Cousminer, Diana L.; Bisgaard, Hans; Chawes, Bo; Stokholm, Jakob; Waage, Johannes; Eriksen, Patrick; Sevelsted, Astrid; Melbye, Mads; Feenstra, Bjarke; Pers, Tune Hannes; Bønnelykke, Klaus.

    In: Human Molecular Genetics, Vol. 24, No. 4, 2015, p. 1155-1168.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  13. E-pub ahead of print

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D’Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Søren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published

    Archival Bone Marrow Samples: Suitable for Multiple Biomarker Analysis?. / Lund, Bendik; Najmi, A. Laeya; Wesolowska, Agata; Landsem, Veslemoy M.; Rasmussen, Kirsten K.; Borst, Louise; Gupta, Ramneek; Schmiegelow, Kjeld; Klungland, Helge.

    In: Applied Immunohistochemistry & Molecular Morphology, Vol. 23, No. 1, 2015, p. 71-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  15. Published
  16. E-pub ahead of print

    A retrospective metagenomics approach to studying Blastocystis. / Andersen, Lee O'Brien; Bonde, Ida; Nielsen, Henrik Bjørn; Stensvold, Christen Rune.

    In: F E M S Microbiology Reviews, Vol. 91, No. 7, 2015, p. 1-9.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  17. Published
  18. Published
  19. Published

    Aspiperidine oxide, a piperidine N-oxide from the filamentous fungus Aspergillus indologenus. / Petersen, Lene Maj; Kildgaard, Sara; Jaspars, Marcel; Larsen, Thomas Ostenfeld.

    In: Tetrahedron Letters, Vol. 56, No. 14, 2015, p. 1847-1850.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    A taxonomic revision of the Wallemia sebi species complex. / Jančič, Sašo; Nguyen, Hai D. T.; Frisvad, Jens Christian; Zalar, Polona; Schroers, Hans-Josef; Seifert, Keith A.; Gunde-Cimerman, Nina.

    In: P L o S One, Vol. 10, No. 5, e0125933, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  22. Published

    Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides. / Oehlenschlæger, Christian Berg; Løvgreen, Monika Nøhr; Reinauer, Eva; Lehtinen, Emilia; Pind, Marie-Louise Lindberg; Harris, Pernille; Martinussen, Jan; Willemoës, Martin.

    In: Applied and Environmental Microbiology, Vol. 81, No. 10, 2015, p. 3395-3404.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  24. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  25. Published

    Characterization of Alternaria strains from Argentinean blueberry, tomato, walnut and wheat. / Andersen, Birgitte; Nielsen, Kristian Fog; Fernández Pinto, Virginia; Patriarca, Andrea.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 1-10.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  26. Published
  27. Published
  28. Published
  29. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  30. Published
  31. Published
  32. Published

    Complementing DIGE proteomics and DNA subarray analyses to shed light on Oenococcus oeni adaptation to ethanol in wine-simulated conditions. / Costantini, Antonella; Rantsiou, Kalliopi; Majumder, Avishek; Jacobsen, Susanne; Pessione, Enrica; Svensson, Birte; Garcia-Moruno, Emilia; Cocolin, Luca.

    In: Journal of Proteomics, Vol. 123, 2015, p. 114-127.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published

    Complete Genome Sequence of the Persistent Listeria monocytogenes Strain R479a. / Schmitz-Esser, Stephan; Gram, Lone; Wagner, Martin.

    In: Genome Announcements, Vol. 3, No. 2, e00150-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  34. Published
  35. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Sønderby, Søren Kaae; Sønderby, Casper Kaae; Nielsen, Henrik; Winther, Ole.

    Algorithms for Computational Biology: Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings. ed. / Adrian-Horia Dediu; Francisco Hernández-Quiroz; Carlos Martín-Vide; David A. Rosenblueth. Vol. 9199 Springer International Publishing, 2015. p. 68-80 (Lecture Notes in Computer Science).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

  36. Published
  37. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  38. Published

    Current state of genome-scale modeling in filamentous fungi. / Brandl, Julian; Andersen, Mikael Rørdam.

    In: Biotechnology Letters, Vol. 37, No. 6, 2015, p. 1131-1139.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  39. Published

    Deep sequencing reveals different compositions of mRNA transcribed from the F8 gene in a panel of FVIII-producing CHO cell lines. / Kaas, Christian Schrøder; Bolt, Gert; Hansen, Jens J; Andersen, Mikael Rørdam; Kristensen, Claus.

    In: Biotechnology Journal, Vol. 10, No. 7, 2015, p. 1082-1089.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published

    Dereplication-guided isolation of depsides thielavins S-T and lecanorins D-F from the endophytic fungus Setophoma sp.. / de Medeiros, Livia S.; Abreu, Lucas M.; Nielsen, Anita; Ingmer, Hanne; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Rodrigues-Filho, Edson.

    In: Phytochemistry, Vol. 111, 2015, p. 154-162.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  42. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  43. Published

    Development of a real-time PCR method coupled with a selective pre-enrichment step for quantification of Morganella morganii and Morganella psychrotolerans in fish products. / Podeur, Gaetan; Dalgaard, Paw; Leroi, Francoise; Prevost, Herve; Emborg, Jette; Martinussen, Jan; Hansen, Lars Hestbjerg; Filet, Marie-France.

    In: International Journal of Food Microbiology, Vol. 203, 2015, p. 55-62.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  44. Published
  45. Published

    Development of Spatial Distribution Patterns by Biofilm Cells. / Haagensen, Janus Anders Juul; Hansen, Susse Kirkelund; Bak Christensen, Bjarke; Pamp, Sünje Johanna; Molin, Søren.

    In: Applied and Environmental Microbiology, Vol. 81, No. 18, 2015, p. 6120-6128.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  46. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  47. Published

    Dynamic single-cell analysis of Saccharomyces cerevisiae under process perturbation: Comparison of different methods for monitoring the intensity of population heterogeneity. / Delvigne, Frank; Baert, Jonathan; Gofflot, Sébastien; Lejeune, Annick; Telek, Samuel; Johanson, Ted; Eliasson Lantz, Anna.

    In: Journal of Chemical Technology and Biotechnology, Vol. 90, No. 2, 2015, p. 314–323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  48. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Society of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: ResearchPoster – Annual report year: 2015

  49. Published

    Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. / Jensen, Niels F.; Stenvang, Jan; Beck, Mette Kristina; Hanáková, Barbora; Belling, Kirstine C.; Nguyen Do, Khoa; Viuff, Birgitte; Nygård, Sune B.; Gupta, Ramneek; Rasmussen, Mads H.; Tarpgaard, Line S.; Hansen, Tine P.; Budinská, Eva; Pfeiffer, Per; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Delorenzi, Mauro; Andersen, Claus L.; Rømer, Maria U.; Brünner, Nils; Moreira, José M.A.

    In: Molecular Oncology, Vol. 9, No. 6, 2015, p. 1169-1185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  50. Published

    Evidence of interactions between aroma compounds and the CB1 receptor opens new routes for regulation of food intake. / Le Bon, Anne-Marie; Audouze, Karine Marie Laure; Taboureau, Olivier ; Burton, Kathryn; Belloir, Christine; Desmetz, Catherine; Brunak, Søren; Guichard, Elisabeth; Tromelin, Anne.

    In: Chemical Senses, Vol. 40, No. 3, 2015, p. 280-280.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  51. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

Previous 1 2 3 4 5 6 7 8 ...97 Next
Download list: To download, please limit the number of search results to 1,000 or less.