Department of Systems Biology
- 2013
- Published
31P gain of chromosomal region 15q26 cause increased expression of blm and fanci, and is associated with sensitivity to platinum chemotherapy in triple negative breast cancer. / Birkbak, Nicolai Juul; Li, Y.; Bowman-Collin, C.; Iglehart, J.D.; Silver, D.; Wang, Z.C.; Szallasi, Zoltan Imre; Richardson, A.
In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii22.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
45p deciphering patterns of chromosomal aberrations in breast cancer patients: how defects in specific dna repair genes affect the accumulation of gross dna aberrations in the cancer genome. / Marquard, Andrea Marion; Birkbak, Nicolai Juul; Eklund, Aron Charles; Varga, A.; Szüts, D.; Szallasi, Zoltan Imre.
In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii26.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Accurate prediction of secondary metabolite gene clusters in filamentous fungi.. / Andersen, Mikael Rørdam; Nielsen, Jakob Blæsbjerg; Klitgaard, Andreas; Petersen, Lene Maj; Zachariasen, Mia; Hansen, Tilde J; Holberg Blicher, Lene; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Mortensen, Uffe Hasbro.
In: National Academy of Sciences. Proceedings, Vol. 110, No. 1, 2013, p. E99-E107.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
A conceptual model linking functional gene expression and reductive dechlorination rates of chlorinated ethenes in clay rich groundwater sediment. / Bælum, Jacob; Chambon, Julie Claire Claudia; Scheutz, Charlotte; Binning, Philip John; Laier, Troels; Bjerg, Poul Løgstrup; Jacobsen, Carsten.
In: Water Research, Vol. 47, No. 7, 2013, p. 2467-2478.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, M. Thomas P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.
In: The nature of parasitism: Joint Spring Symposium 2013, Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. 2013. p. 8.Publication: Research - peer-review › Conference abstract in proceedings – Annual report year: 2013
- Published
Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.
In: Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).Publication: Research - peer-review › Book chapter – Annual report year: 2013
- Published
Aquaculture application and ecophysiology of marine bacteria from the Roseobacter clade. / D'Alvise, Paul; Gram, Lone (Main supervisor).
Søborg : DTU Food, 2013. 79 p.Publication: Research › Ph.d. thesis – Annual report year: 2013
- Published
A Unified Model of the GABA(A) Receptor Comprising Agonist and Benzodiazepine Binding Sites. / Kongsbak, Kristine Grønning; Bergmann, Rikke; Sørensen, Pernille Louise; Sander, Tommy; Balle, Thomas.
In: P L o S One, Vol. 8, No. 1, 2013, p. e52323.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.
In: Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).Publication: Research - peer-review › Book chapter – Annual report year: 2013
- Published
Cell mass and cell cycle dynamics of an asynchronous budding yeast population : Experimental observations, flow cytometry data analysis, and multi-scale modeling. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Sørensen, Søren J.; Jensen, Anker Degn; Nopens, Ingmar; Eliasson Lantz, Anna; Gernaey, Krist.
In: Biotechnology and Bioengineering (Print), Vol. 110, No. 3, 2013, p. 812-826.Publication: Research - peer-review › Journal article – Annual report year: 2012
- Published
Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production. / Jensen, Birgit; Knudsen, Inge M.B.; Andersen, Birgitte; Nielsen, Kristian Fog; Thrane, Ulf; Jensen, Dan Funck; Larsen, John.
In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 313-322.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
ChemProt-2.0: visual navigation in a disease chemical biology database. / Kjærulff, Sonny Kim; Wich, Louis; Kringelum, Jens Vindahl; Jacobsen, Ulrik Plesner; Kouskoumvekaki, Irene; Audouze, Karine Marie Laure; Lund, Ole; Brunak, Søren; Oprea, Tudor; Taboureau, Olivier .
In: Nucleic Acids Research, Vol. 41, No. D1, 2013, p. D464-D469.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.. / Vesth, Tammi Camilla; Lagesen, Karin; Acar, Öncel; Ussery, David.
In: P L o S One, Vol. 8, No. 4, 2013, p. e60120.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Comparative fermentation of insoluble carbohydrates in an in vitro human feces model spiked with Lactobacillus acidophilus NCFM. / Knudsen, Anne; van Zanten, Gabriella C.; Jensen, Susanne L.; Forssten, Sofia D.; Saarinen, Markku; Lahtinen, Sampo J.; Bandsholm, Ole; Svensson, Birte; Jespersen, Lene; Blennow, Andreas.
In: Starch, Vol. 65, No. 3‐4, 2013, p. 346-353.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Content and distribution of phytanic acid diastereomers in organic milk as affected by feed composition. / Che, Brita Ngum; Kristensen, Troels; Nebel, Caroline; Dalsgaard, Trine; Hellgren, Lars; Young, Jette Feveile; Larsen, Mette K.
In: Journal of Agricultural and Food Chemistry, Vol. 61, No. 1, 2013, p. 225-230.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Covalent Immobilization of β-Glucosidase on Magnetic Particles for Lignocellulose Hydrolysis. / Alftrén, Johan; Hobley, Timothy John.
In: Applied Biochemistry and Biotechnology, Vol. 169, No. 7, 2013, p. 2076-2087.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Development of a Rapid Real-Time PCR Method as a Tool To Quantify Viable Photobacterium phosphoreum Bacteria in Salmon (Salmo salar) Steaks. / Macé, Sabrina; Mamlouk, Kelthoum; Chipchakova, Stoyka; Prévost, Hervé; Joffraud, Jean-Jacques; Dalgaard, Paw; Pilet, Marie-France; Dousset, Xavier.
In: Applied and Environmental Microbiology, Vol. 79, No. 8, 2013, p. 2612-2619.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Discovery of a novel selective PPARγ ligand with partial agonist binding properties by integrated in silico / in vitro work flow. / Kouskoumvekaki, Irene; Petersen, Rasmus K.; Fratev, Filip Filipov ; Taboureau, Olivier ; Nielsen, Thomas Eiland; Oprea, Tudor; Sonne, Si Brask; Flindt, Esben N.; Jonsdottir, Svava Osk; Kristiansen, Karsten.
In: Journal of Chemical Information and Modeling, Vol. 53, No. 4, 2013, p. 923-937.Publication: Research - peer-review › Journal article – Annual report year: 2013
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Effect of natural microbiota on growth of Salmonella spp. in fresh pork – A predictive microbiology approach. / Møller, Cleide; Ilg, Y.; Aabo, Søren; Christensen, Bjarke Bak; Dalgaard, Paw; Hansen, Tina Beck.
In: Food Microbiology, Vol. 34, No. 2, 2013, p. 284-295.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Engineering strategies aimed at control of acidification rate of lactic acid bacteria. / Martinussen, Jan; Solem, Christian; Holm, Anders Koefoed; Jensen, Peter Ruhdal.
In: Current Opinion in Biotechnology, Vol. 24, No. 2, 2013, p. 124-129.Publication: Research - peer-review › Journal article – Annual report year: 2013
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Evolutionary remodeling of global regulatory networks during long-term bacterial adaptation to human hosts.. / Pedersen, Søren Damkiær; Yang, Lei; Molin, Søren; Jelsbak, Lars.
In: National Academy of Sciences. Proceedings, Vol. 110, No. 19, 2013.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Expression and functional studies of genes involved in transport and metabolism of glycerol in Pachysolen tannophilus.. / Liu, Xiaoying; Mortensen, Uffe Hasbro; Workman, Mhairi.
In: Microbial Cell Factories, Vol. 12, 2013, p. 27.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Filtering apparatus and method for mixing, extraction and/or separation. / Stubbe, Peter Reimer (Inventor); Hansen, Preben Bøje (Inventor).
IPC No.: A23L1/221. Feb 21, 2013.Publication: Research › Patent – Annual report year: 2013
- Published
From essential to persistent genes: a functional approach to constructing synthetic life. / Acevedo-Rocha, Carlos G.; Fang, Gang; Schmidt, Markus; Ussery, David; Danchin, Antoine.
In: Trends in Genetics, Vol. 29, No. 5, 2013, p. 273-279.Publication: Research - peer-review › Journal article – Annual report year: 2013
- Published
Fusarium graminearum and Its Interactions with Cereal Heads: Studies in the Proteomics Era.. / Yang, Fen; Jacobsen, Susanne; Jørgensen, Hans J L; Collinge, David B.; Svensson, Birte; Finnie, Christine.
In: Frontiers in Plant Science, Vol. 4, 2013, p. 37.Publication: Research - peer-review › Journal article – Annual report year: 2013