Department of Systems Biology

  1. 2016
  2. Published

    A Bacteriophage-Acquired O-Antigen Polymerase (Wzyβ) from P. aeruginosa Serotype O16 Performs a Varied Mechanism Compared to Its Cognate Wzyα. / Taylor, Veronique L.; Hoage, Jesse F. J.; Thrane, Sandra Wingaard; Huszczynski, Steven M.; Jelsbak, Lars; Lam, Joseph S.

    In: Frontiers in Microbiology, Vol. 7, 393, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    A combined prediction strategy increases identification of peptides bound with high affinity and stability to porcine MHC class I molecules SLA-1*04:01, SLA-2*04:01, and SLA-3*04:01. / Pedersen, Lasse Eggers; Rasmussen, Michael; Harndahl, Mikkel; Nielsen, Morten; Buus, Søren; Jungersen, Gregers.

    In: Immunogenetics, Vol. 68, No. 2, 2016, p. 157-165.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    A fast and robust method for whole genome sequencing of the Aleutian Mink Disease Virus (AMDV) genome. / Hagberg, Emma Elisabeth; Krarup, Anders; Fahnøe, Ulrik; Larsen, Lars Erik; Dam-Tuxen, Rebekka; Pedersen, Anders Gorm.

    In: Journal of Virological Methods, Vol. 234, 2016, p. 43-51.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Alcohol dehydrogenase gene ADH3 activates glucose alcoholic fermentation in genetically engineered Dekkera bruxellensis yeast. / Schifferdecker, Anna Judith; Siurkus, Juozas; Andersen, Mikael Rørdam; Jørck-Ramberg, Dorte; Ling, Zhihao; Zhou, Nerve; Blevins, James E.; Sibirny, Andriy A.; Piškur, Jure; Ishchuk, Olena P.

    In: Applied Microbiology and Biotechnology, Vol. 100, No. 7, 2016, p. 3219-3231.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. E-pub ahead of print
  7. Published

    An investigation on the application of ohmic heating of cold water shrimp and brine mixtures. / Pedersen, Søren Juhl; Feyissa, Aberham Hailu; Brøkner Kavli, Sissel Therese; Frosch, Stina.

    In: Journal of Food Engineering, Vol. 179, 2016, p. 28-35.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Antibiotic combination therapy can select for broad-spectrum multidrug resistance in Pseudomonas aeruginosa. / Vestergaard, Martin; Paulander, Wilhelm; Marvig, Rasmus L.; Clasen, Julie; Jochumsen, Nicholas; Molin, Søren; Jelsbak, Lars; Ingmer, Hanne; Folkesson, Sven Anders.

    In: International Journal of Antimicrobial Agents, Vol. 47, 2016, p. 48-55.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    A robust prognostic gene expression signature for early stage lung adenocarcinoma. / Krzystanek, Marcin; Moldvay, Judit; Szüts, David; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: Biomarker Research, Vol. 4, No. 4, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania. / Sonda, Tolbert; Kumburu, Happiness; Zwetselaar, Marco van; Ahrenfeldt, Johanne; Alifrangis, Michael; Lund, Ole; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Infection Control & Hospital Epidemiology, Vol. 37, No. 5, 2016, p. 622-623.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2016

  11. Published

    Cellulolytic and xylanolytic activities of common indoor fungi. / Andersen, Birgitte; Poulsen, Rehab; Hansen, Gustav Hammerich.

    In: International Biodeterioration and Biodegradation, Vol. 107, 2016, p. 111-116.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. Published

    Chemical Diversity, Origin, and Analysis of Phycotoxins. / Rasmussen, Silas Anselm; Andersen, Aaron John Christian; Andersen, Nikolaj Gedsted; Nielsen, Kristian Fog; Hansen, Per Juel; Larsen, Thomas Ostenfeld.

    In: Journal of Natural Products, Vol. 79, No. 3, 2016, p. 662-673.

    Publication: Research - peer-reviewReview – Annual report year: 2016

  13. Published

    Chemosensory perception, symptoms and autonomic responses during chemical exposure in multiple chemical sensitivity. / Andersson, Linus; Claeson, Anna Sara; Dantoft, Thomas Meinertz; Skovbjerg, Sine; Lind, Nina; Nordin, Steven.

    In: International Archives of Occupational and Environmental Health, Vol. 89, No. 1, 2016, p. 79-88.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published

    ChemProt-3.0: a global chemical biology diseases mapping. / Kringelum, Jens Vindahl; Kjærulff, Sonny Kim; Brunak, Søren; Lund, Ole; Oprea, Tudor I.; Taboureau, Olivier .

    In: Database, Vol. 2016, bav123, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  15. Published

    Control of lysosomal biogenesis and Notch-dependent tissue patterning by components of the TFEB-V-ATPase axis in Drosophila melanogaster. / Tognon, Emiliana; Kobia, Francis; Busi, Ilaria; Fumagalli, Arianna; De Masi, Federico; Vaccari, Thomas.

    In: Autophagy, Vol. 12, No. 3, 2016, p. 499-514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  16. Published

    Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells. / Ternette, Nicola; Yang, Hongbing; Partridge, Thomas; Llano, Anuska; Cedeño, Samandhy; Fischer, Roman; Charles, Philip D.; Dudek, Nadine L.; Mothe, Beatriz; Crespo, Manuel; Fischer, William M.; Korber, Bette T. M.; Nielsen, Morten; Borrow, Persephone; Purcell, Anthony W.; Brander, Christian; Dorrell, Lucy; Kessler, Benedikt M.; Hanke, Tomáš.

    In: European Journal of Immunology, Vol. 46, No. 1, 2016, p. 60-69.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  17. E-pub ahead of print
  18. Published

    Divergent Response Profile in Activated Cord Blood T cells from First-born Child Implies Birth-order-associated in Utero Immune Programming. / Kragh, Marie; Larsen, Jeppe Madura; Thysen, Anna Hammerich; Rasmussen, Morten Arendt; Wolsk, Helene Mygind; Bisgaard, Hans Flinker; Pedersen, Susanne Brix.

    In: Allergy, Vol. 71, No. 3, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. Published

    Draft genome sequence and chemical profiling of Fusarium langsethiae, an emerging producer of type A trichothecenes. / Lysøe, Erik; Frandsen, Rasmus John Normand; Divon, Hege H.; Terzi, Valeria; Orrù, Luigi; Lamontanara, Antonella; Kolseth, Anna Karin; Nielsen, Kristian Fog; Thrane, Ulf.

    In: International Journal of Food Microbiology, Vol. 221, 2016, p. 29-36.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  20. E-pub ahead of print

    Dynamics of immature mAb glycoform secretion during CHO cell culture: An integrated modelling framework. / Jimenez del Val, Ioscani; Fan, Yuzhou; Weilguny, Dietmar.

    In: Biotechnology Journal, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  21. Published

    Effect of Vitamin D3 Supplementation During Pregnancy on Risk of Persistent Wheeze in the Offspring A Randomized Clinical Trial : A Randomized Clinical Trial. / Chawes, Bo L.; Bonnelykke, Klaus; Stokholm, Jakob; Vissing, Nadja H.; Bjarnadottir, Elin; Schoos, Ann-Marie M.; Wolsk, Helene M.; Pedersen, Tine Marie; Vinding, Rebecca K.; Thorsteinsdottir, Sunna; Arianto, Lambang; Hallas, Henrik W.; Heickendorff, Lene; Pedersen, Susanne Brix; Rasmussen, Morten A.; Bisgaard, Hans Flinker.

    In: J A M A: The Journal of the American Medical Association, Vol. 315, No. 4, 2016, p. 353-361.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  22. Published

    Evolution of NADPH-cytochrome P450 oxidoreductases (POR) in Apiales - POR 1 is missing. / Andersen, Trine Bundgaard; Hansen, Niels Bjørn; Laursen, Tomas; Weitzel, Corinna; Simonsen, Henrik Toft.

    In: Molecular Phylogenetics and Evolution, Vol. 98, 2016, p. 21-28.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  23. Published
  24. Published

    Extraction, characterization and application of antioxidants from the Nordic brown alga Fucus vesiculosus. / Hermund, Ditte Baun; Jacobsen, Charlotte (Supervisor); Nielsen, Kristian Fog (Supervisor).

    Kgs. Lyngby : National Food Institute, Technical University of Denmark, 2016. 111 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2016

  25. Published

    Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati. / Frisvad, Jens Christian; Larsen, Thomas Ostenfeld.

    In: Frontiers in Microbiology, Vol. 6, 1485, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  26. Published
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