Department of Systems Biology

  1. 2015
  2. E-pub ahead of print
  3. E-pub ahead of print

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways.. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Accepted/In press

    Acylcarnitine plasma levels suggest incomplete mitochondrial fatty acid oxidation in young, healthy men with low birth weight. / Ribel-Madsen, Amalie; Ribel-Madsen, Rasmus; Brøns, Charlotte; B. Newgard, Christopher; Vaag, Allan; Hellgren, Lars.

    2015. Abstract from 28th Nordic Lipid Symposium, Reykjavik, Iceland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  5. Published
  6. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 1, 2015, p. 194.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Amino acid and glucose metabolism in fed-batch CHO cell culture affects antibody production and glycosylation. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering, Vol. 112, No. 3, 2015, p. 521-535.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Accepted/In press

    A multi-pronged investigation into the effect of glucose starvation and culture duration on fed-batch CHO cell culture. / Fan, Yuzhou; Jimenez Del Val, Ioscani; Müller, Christian; Lund, Anne Mathilde; Wagtberg Sen, Jette; Rasmussen, Søren Kofoed; Kontoravdi, Cleo; Baycin-Hizal, Deniz; Betenbaugh, Michael J.; Weilguny, Dietmar; Andersen, Mikael Rørdam.

    In: Biotechnology and Bioengineering (Print), 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published
  11. Published

    A novel approach for studying programmed cell death in living plant tissues. / Mark, Christina; Dufva, Martin (Supervisor); Finnie, Christine (Supervisor).

    Kgs. Lyngby : Technical University of Denmark (DTU), 2015. 140 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  12. Published

    A novel common variant in DCST2 is associated with length in early life and height in adulthood. / van der Valk, Ralf J.P.; Kreiner-Møller, Eskil; Kooijman, Marjolein N.; Guxens, Mònica; Stergiakouli, Evangelia; Sääf, Annika; Bradfield, Jonathan P.; Geller, Frank; Hayes, M. Geoffrey; Cousminer, Diana L.; Bisgaard, Hans; Chawes, Bo; Stokholm, Jakob; Waage, Johannes; Eriksen, Patrick; Sevelsted, Astrid; Melbye, Mads; Feenstra, Bjarke; Pers, Tune Hannes; Bønnelykke, Klaus.

    In: Human Molecular Genetics, Vol. 24, No. 4, 2015, p. 1155-1168.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  13. E-pub ahead of print

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D’Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Søren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published

    Archival Bone Marrow Samples: Suitable for Multiple Biomarker Analysis?. / Lund, Bendik; Najmi, A. Laeya; Wesolowska, Agata; Landsem, Veslemoy M.; Rasmussen, Kirsten K.; Borst, Louise; Gupta, Ramneek; Schmiegelow, Kjeld; Klungland, Helge.

    In: Applied Immunohistochemistry & Molecular Morphology, Vol. 23, No. 1, 2015, p. 71-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  15. Published
  16. Published
  17. Published
  18. Published

    Aspiperidine oxide, a piperidine N-oxide from the filamentous fungus Aspergillus indologenus. / Petersen, Lene Maj; Kildgaard, Sara; Jaspars, Marcel; Larsen, Thomas Ostenfeld.

    In: Tetrahedron Letters, Vol. 56, No. 14, 2015, p. 1847-1850.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  19. Published

    A taxonomic revision of the Wallemia sebi species complex. / Jančič, Sašo; Nguyen, Hai D. T.; Frisvad, Jens Christian; Zalar, Polona; Schroers, Hans-Josef; Seifert, Keith A.; Gunde-Cimerman, Nina.

    In: P L o S One, Vol. 10, No. 5, e0125933, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. Published

    Bacillus halodurans Strain C125 Encodes and Synthesizes Enzymes from Both Known Pathways To Form dUMP Directly from Cytosine Deoxyribonucleotides. / Oehlenschlæger, Christian Berg; Løvgreen, Monika Nøhr; Reinauer, Eva; Lehtinen, Emilia; Pind, Marie-Louise Lindberg; Harris, Pernille; Martinussen, Jan; Willemoës, Martin.

    In: Applied and Environmental Microbiology, Vol. 81, No. 10, 2015, p. 3395-3404.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  22. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  23. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published

    Characterization of Alternaria strains from Argentinean blueberry, tomato, walnut and wheat. / Andersen, Birgitte; Nielsen, Kristian Fog; Fernández Pinto, Virginia; Patriarca, Andrea.

    In: International Journal of Food Microbiology, Vol. 196, 2015, p. 1-10.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  25. Published
  26. Published
  27. Published
  28. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  29. Published
  30. Published
  31. Published

    Complementing DIGE proteomics and DNA subarray analyses to shed light on Oenococcus oeni adaptation to ethanol in wine-simulated conditions. / Costantini, Antonella; Rantsiou, Kalliopi; Majumder, Avishek; Jacobsen, Susanne; Pessione, Enrica; Svensson, Birte; Garcia-Moruno, Emilia; Cocolin, Luca.

    In: Journal of Proteomics, Vol. 123, 2015, p. 114-127.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published

    Complete Genome Sequence of the Persistent Listeria monocytogenes Strain R479a. / Schmitz-Esser, Stephan; Gram, Lone; Wagner, Martin.

    In: Genome Announcements, Vol. 3, No. 2, e00150-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published
  34. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Sønderby, Søren Kaae; Sønderby, Casper Kaae; Nielsen, Henrik; Winther, Ole.

    Algorithms for Computational Biology: Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings. ed. / Adrian-Horia Dediu; Francisco Hernández-Quiroz; Carlos Martín-Vide; David A. Rosenblueth. Vol. 9199 Springer International Publishing, 2015. p. 68-80 (Lecture Notes in Computer Science).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

  35. Published
  36. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  37. Published

    Current state of genome-scale modeling in filamentous fungi. / Brandl, Julian; Andersen, Mikael Rørdam.

    In: Biotechnology Letters, Vol. 37, No. 6, 2015, p. 1131-1139.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  38. Published

    Deep sequencing reveals different compositions of mRNA transcribed from the F8 gene in a panel of FVIII-producing CHO cell lines. / Kaas, Christian Schrøder; Bolt, Gert; Hansen, Jens J; Andersen, Mikael Rørdam; Kristensen, Claus.

    In: Biotechnology Journal, Vol. 10, No. 7, 2015, p. 1082-1089.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  39. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published

    Dereplication-guided isolation of depsides thielavins S-T and lecanorins D-F from the endophytic fungus Setophoma sp.. / de Medeiros, Livia S.; Abreu, Lucas M.; Nielsen, Anita; Ingmer, Hanne; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Rodrigues-Filho, Edson.

    In: Phytochemistry, Vol. 111, 2015, p. 154-162.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  42. Published

    Development of a real-time PCR method coupled with a selective pre-enrichment step for quantification of Morganella morganii and Morganella psychrotolerans in fish products. / Podeur, Gaetan; Dalgaard, Paw; Leroi, Francoise; Prevost, Herve; Emborg, Jette; Martinussen, Jan; Hansen, Lars Hestbjerg; Filet, Marie-France.

    In: International Journal of Food Microbiology, Vol. 203, 2015, p. 55-62.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  43. Published
  44. Published

    Development of Spatial Distribution Patterns by Biofilm Cells. / Haagensen, Janus Anders Juul; Hansen, Susse Kirkelund; Bak Christensen, Bjarke; Pamp, Sünje Johanna; Molin, Søren.

    In: Applied and Environmental Microbiology, Vol. 81, No. 18, 2015, p. 6120-6128.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  45. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  46. Published

    Dynamic single-cell analysis of Saccharomyces cerevisiae under process perturbation: Comparison of different methods for monitoring the intensity of population heterogeneity. / Delvigne, Frank; Baert, Jonathan; Gofflot, Sébastien; Lejeune, Annick; Telek, Samuel; Johanson, Ted; Eliasson Lantz, Anna.

    In: Journal of Chemical Technology and Biotechnology, Vol. 90, No. 2, 2015, p. 314–323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  47. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Society of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: ResearchPoster – Annual report year: 2015

  48. Published

    Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. / Jensen, Niels F.; Stenvang, Jan; Beck, Mette Kristina; Hanáková, Barbora; Belling, Kirstine C.; Nguyen Do, Khoa; Viuff, Birgitte; Nygård, Sune B.; Gupta, Ramneek; Rasmussen, Mads H.; Tarpgaard, Line S.; Hansen, Tine P.; Budinská, Eva; Pfeiffer, Per; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Delorenzi, Mauro; Andersen, Claus L.; Rømer, Maria U.; Brünner, Nils; Moreira, José M.A.

    In: Molecular Oncology, Vol. 9, No. 6, 2015, p. 1169-1185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published

    Evidence of interactions between aroma compounds and the CB1 receptor opens new routes for regulation of food intake. / Le Bon, Anne-Marie; Audouze, Karine Marie Laure; Taboureau, Olivier ; Burton, Kathryn; Belloir, Christine; Desmetz, Catherine; Brunak, Søren; Guichard, Elisabeth; Tromelin, Anne.

    In: Chemical Senses, Vol. 40, No. 3, 2015, p. 280-280.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  50. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  51. Published

    Evolution of substrate recognition sites (SRSs) in cytochromes P450 from Apiaceae exemplified by the CYP71AJ subfamily. / Dueholm, Bjørn; Krieger, Celia; Drew, Damian; Olry, Alexandre; Kamo, Tsunashi; Taboureau, Olivier ; Weitzel, Corinna; Bourgaud, Frederic; Hehn, Alain; Simonsen, Henrik Toft.

    In: B M C Evolutionary Biology, Vol. 15, No. 122, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  52. Published

    Expanding the species and chemical diversity of Penicillium section Cinnamopurpurea. / Peterson, Stephen W.; Jurjević, Željko; Frisvad, Jens Christian.

    In: P L o S One, Vol. 10, No. 4, e0121987, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  53. Published
  54. E-pub ahead of print
  55. Published

    Expression profiling and functional analyses of BghPTR2, a peptide transporter from Blumeria graminis f. sp. hordei. / Droce, Aida; Holm, Kirsten B.; Olsson, Stefan; Frandsen, Rasmus John Normand; Sondergaard, Teis Esben; Sørensen, Jens Laurids; Giese, Henriette.

    In: Fungal Biology, Vol. 119, No. 7, 2015, p. 551-559.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  56. Published

    Extended spectrum beta-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment. / Kjeldsen, Thea S. B.; Sommer, Morten Otto Alexander; Olsen, John E.

    In: B M C Microbiology, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  57. Published

    Five new Talaromyces species with ampulliform-like phialides and globose rough walled conidia resembling T. verruculosus. / Visagie, Cobus M.; Yilmaz, Neriman; Frisvad, Jens Christian; Houbraken, Jos; Seifert, Keith A.; Samson, Robert A.; Jacobs, Karin.

    In: Mycoscience, Vol. 56, No. 5, 2015, p. 486-502.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  58. Accepted/In press

    FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses. / Simon, Christian; Kudahl, Ulrich Johan; Sun, Jing; Olsen, Lars Rønn; Zhang, Guang Lan; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunology Research, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  59. Published

    Gene expression analysis identifies global gene dosage sensitivity in cancer. / Fehrmann, Rudolf S. N.; Karjalainen, Juha M.; Krajewska, Malgorzata; Westra, Harm-Jan; Maloney, David; Simeonov, Anton; Pers, Tune Hannes; Hirschhorn, Joel N.; Jansen, Ritsert C.; Schultes, Erik A.; van Haagenl, Herman H. H. B. M.; de Vries, Elisabeth G. E.; Meerman, Gerard J. te; Wijmenga, Cisca; van Vugt, Marcel A. T. M.; Franke, Lude.

    In: Nature Genetics, Vol. 47, No. 2, 2015, p. 115-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  60. Published

    Genome mining reveals unlocked bioactive potential of marine Gram-negative bacteria. / Machado, Henrique; Sonnenschein, Eva; Melchiorsen, Jette; Gram, Lone.

    In: B M C Genomics, Vol. 16, 158, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  61. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  62. Published

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, Vol. 29, 2015, p. 297-303.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  63. Published

    Genomics and ecophysiology of heterotrophic nitrogen fixing bacteria isolated from estuarine surface water. / Bentzon-Tilia, Mikkel; Severin, Ina; Hansen, Lars H.; Riemann, Lasse.

    In: mBio (Print), Vol. 6, No. 4, e00929-15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  64. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  65. Published
  66. Published
  67. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL6 mice fed a high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2015. Abstract from Keystone Symposia - Gut Microbiota Modulation of Host Physiology: The Search for Mechanism, Keystone, Colorado, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  68. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome. / Favero, Francesco; McGranahan, Nicholas; Salm, Maximilian P.; Birkbak, Nicolai Juul; Sanborn, J. Zachary ; Benz, Stephen C. ; Becq, Jennifer; Peden, John F. ; Kingsbury, Zoya ; Grocok, Russell J. ; Eklund, Aron Charles.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  69. Published

    Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling. / Basse, Astrid L.; Dixen, Karen; Yadav, Rachita; Tygesen, Malin P.; Qvortrup, Klaus; Kristiansen, Karsten; Quistorff, Bjorn; Gupta, Ramneek; Wang, Jun; Hansen, Jacob B.

    In: B M C Genomics, Vol. 16, No. 215, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  70. E-pub ahead of print

    Glycoengineering of Chinese hamster ovary cells for enhanced erythropoietin N-glycan branching and sialylation. / Yin, Bojiao; Gao, Yuan; Chung, Cheng-yu; Yang, Shuang; Blake, Emily; C. Stuczynski, Mark; Tang, Juechun; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam; Zhang, Hui; Betenbaugh, Michael J.

    In: Biotechnology and Bioengineering (Print), 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  71. Accepted/In press
  72. Published

    Hand eczema and stratum corneum ceramides. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Wilkinson, S.; Jemec, G. B. E.; Agner, T.

    In: Clinical and Experimental Dermatology, Vol. 40, No. 3, 2015, p. 243-246.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  73. Published

    Heterologous production of fungal secondary metabolites in Aspergilli. / Anyaogu, Diana Chinyere; Mortensen, Uffe Hasbro.

    In: Frontiers in Microbiology, Vol. 6, 77, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  74. Published
  75. Published

    Aspergillus nidulans as a platform for discovery and characterization of complex biosynthetic pathways. / Anyaogu, Diana Chinyere; Mortensen, Uffe Hasbro (Main supervisor); Workman, Mhairi (Supervisor).

    Kgs. Lyngby : Department of Systems Biology, DTU, 2015. 96 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  76. Published

    Identification of novel immune and barrier genes in atopic dermatitis by means of laser capture microdissection. / Esaki, Hitokazu; Ewald, David Adrian; Ungar, Benjamin; Rozenblit, Mariya; Zheng, Xiuzhong; Xu, Hui; Estrada, Yeriel D.; Peng, Xiangyu; Mitsui, Hiroshi; Litman, Thomas; Suarez-Farinas, Mayte; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  77. Published

    Identification of possible adverse drug reactions in clinical notes : The case of glucose-lowering medicines. / Warrer, Pernille; Jensen, Peter Bjødstrup; Aagaard, Lise; Jensen, Lars Juhl; Brunak, Søren; Krag, Malene Hammer; Rossing, Peter; Almdal, Thomas; Andersen, Henrik Ullits; Hansen, Ebba Holme.

    In: Journal of Research in Pharmacy Practice, Vol. 4, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  78. Published

    Identifying transcripts associated with aggressiveness in wheat yellow rust by transcriptomic sequencing. / Chen, Yan-Jun; Vogt, Josef Korbinian; Sørensen, Chris Khadgi; Rodriguez-Algaba, Julian; Sicheritz-Pontén, Thomas; Hovmøller, Mogens S.; Justesen, Annemarie Fejer.

    Abstracts : 14th International Cereal Rusts and Powdery Mildews Conference 2015. 2015. p. 106-106 (ARO Abstracts).

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  79. Published
  80. Published

    Individualization of treatments with drugs metabolized by CES1 : combining genetics and metabolomics. / Rasmussen, Henrik B.; Bjerre, Ditte; Linnet, Kristian; Juergens, Gesche; Dalhoff, Kim; Stefansson, Hreinn; Hankemeier, Thomas; Kaddurah-Daouk, Rima; Taboureau, Olivier ; Brunak, Søren; Houmann, Tine; Jeppesen, Pia; Pagsberg, Anne Katrine; Plessen, Kerstin; Dyrborg, Jorgen; Hansen, Peter R.; Hansen, Poul Erik; Hughes, Tim; Werge, Thomas.

    In: Pharmacogenomics, Vol. 16, No. 6, 2015, p. 649-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  81. Published

    Inherited coding variants at the CDKN2A locus influence susceptibility to acute lymphoblastic leukaemia in children. / Xu, Heng; Zhang, Hui; Yang, Wenjian; Yadav, Rachita; Morrison, Alanna C.; Qian, Maoxiang; Devidas, Meenakshi; Liu, Yu; Perez-Andreu, Virginia; Zhao, Xujie; Hansen, Torben; Holm, Jens-Christian; Gupta, Ramneek.

    In: Nature Communications, Vol. 6, 7553, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  82. Published

    Insights from 20 years of bacterial genome sequencing. / Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole; Kora, Guruprased; Wassenaar, Trudy; Poudel, Suresh; Ussery, David.

    In: Functional & Integrative Genomics, Vol. 15, No. 2, 2015, p. 141-161.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  83. Published

    Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. / So, Jonathan; Pasculescu, Adrian; Dai, Anna Y.; Williton, Kelly; James, Andrew; Nguyen, Vivian; Creixell, Pau; Schoof, Erwin M.; Sinclair, John; Barrios-Rodiles, Miriam; Gu, Jun; Krizus, Aldis; Williams, Ryan; Olhovsky, Marina; Dennis, James W.; Wrana, Jeffrey L.; Linding, Rune; Jørgensen, Claus; Pawson, Tony; Colwill, Karen.

    In: Science Signaling, Vol. 8, No. 371, rs3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  84. Published

    Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing. / Vinner, Lasse ; Mourier, Tobias ; Friis-Nielsen, Jens; Gniadecki, Robert; Dybkaer, Karen; Rosenberg, Jacob; Levin Langhof, Jill; Flores Santa Cruz, David; Fonager, Jannik; Gonzalez-Izarzugaza, Jose Maria; Gupta, Ramneek; Sicheritz-Pontén, Thomas; Brunak, Søren; Willerslev, Eske; Nielsen, Lars Peter; Hansen, Anders Johannes .

    In: Scientific Reports, Vol. 5, 13201, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  85. Published

    Isolation of Notoamide S and Enantiomeric 6-epi-Stephacidin A from the Fungus Aspergillus amoenus: Biogenetic Implications. / Kato, Hikaru; Nakahara, Takashi; Sugimoto, Kayo; Matsuo, Kanae; Kagiyama, Ippei; Frisvad, Jens Christian; Sherman, David H.; Williams, Robert M.; Tsukamoto, Sachiko.

    In: Organic Letters, Vol. 17, No. 3, 2015, p. 700-703.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  86. Published

    Lactococcus lactis Thioredoxin Reductase Is Sensitive to Light Inactivation. / Björnberg, Olof; Viennet, Thibault; Skjoldager, Nicklas; Curovic, Aida; Nielsen, Kristian Fog; Svensson, Birte; Hagglund, P.

    In: Biochemistry, Vol. 54, No. 8, 2015, p. 1628-1637.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  87. Published
  88. Published

    Limited similarity between plasmids encoding CTX-M-1 β-lactamase in Escherichia coli from humans, pigs, cattle, organic poultry layers and horses in Denmark. / Jakobsen, Lotte; Bortolaia, Valeria; Bielak, Eliza Maria; Moodley, Arshnee; Olsen, Stefan S.; Hansen, Dennis S.; Frimodt-Møller, Niels; Guardabassi, Luca; Hasman, Henrik.

    In: Journal of Global Antimicrobial Resistance, Vol. 3, No. 2, 2015, p. 132-136.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  89. E-pub ahead of print
  90. Published

    LYRA, a webserver for lymphocyte receptor structural modeling.. / Schantz Klausen, Michael; Anderson, Mads Valdemar; Jespersen, Martin Closter; Nielsen, Morten; Marcatili, Paolo.

    In: Nucleic Acids Research, Vol. 43, No. W1, 2015, p. W349-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  91. Published

    Mendelian Randomization Study of Body Mass Index and Colorectal Cancer Risk. / Thrift, Aaron P.; Gong, Jian; Peters, Ulrike; Chang-Claude, Jenny; Rudolph, Anja; Slattery, Martha L.; Chan, Andrew T.; Locke, Adam E.; Kahali, Bratati; Justice, Anne E.; Pers, Tune Hannes.

    In: Cancer Epidemiology, Biomarkers & Prevention, Vol. 24, No. 7, 2015, p. 1024-1031.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  92. Published

    Metabolomets ioniske komponenter bestemt ved kromatografi og massespektrometri. / Magdenoska, Olivera; Svenssen, Daniel Killerup; Knudsen, Peter Boldsen; Thorhallsdottir, Andrea; Workman, Mhairi; Nielsen, Kristian Fog.

    In: Dansk Kemi, Vol. 96, No. 5, 2015, p. 8-12.

    Publication: CommunicationJournal article – Annual report year: 2015

  93. Published
  94. Published

    Metagenomic heterogeneity explains dual immune effects of endotoxins. / Pedersen, Susanne Brix; Eriksen, Carsten; Larsen, Jeppe Madura; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 277-280.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  95. Published

    Methods for modeling chinese hamster ovary (cho) cell metabolism.. / Herrgard, Markus (Inventor); Pedersen, Lasse Ebdrup (Inventor); Lewis, Nathan S. (Inventor); Bruntse, Anders Bech (Inventor).

    IPC No.: C12N5/07. Patent No.: WO2015010088. Jul 19, 2013.

    Publication: ResearchPatent – Annual report year: 2015

  96. Published

    Microbial Biofilm as a Smart Material. / Garde, Christian; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Sensors, Vol. 15, No. 2, 2015, p. 4229-4241.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  97. Published

    miR-18b overexpression identifies mantle cell lymphoma patients with poor outcome and improves the MIPI-B prognosticator. / Husby, Simon; Ralfkiær, Ulrik Methner; Garde, Christian; Zandi, Roza; Ek, Sara; Kolstad, Arne; Jerkeman, Mats; Laurell, Anna; Räty, Riikka; Pedersen, Lone B.; Pedersen, Anja; Ehinger, Mats; Sundström, Christer; Karjalainen-Lindsberg, Marja-Liisa; Delabie, Jan; Clasen-Linde, Erik; Brown, Peter; Cowland, Jack B.; Workman, Christopher; Geisler, Christian H.; Grønbæk, Kirsten.

    In: Blood, Vol. 125, No. 17, 2015, p. 2669-2677.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  98. Published

    Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition. / Beatson, Scott A.; Ben Zakour, Nouri L.; Totsika, Makrina; Forde, Brian M.; Watts, Rebecca E.; Mabbett, Amanda N.; Szubert, Jan M.; Sarkar, Sohinee; Phan, Minh-Duy; Peters, Kate M.; Petty, Nicola K.; Alikhan, Nabil-Fareed; Sullivan, Mitchell J.; Gawthorne, Jayde A.; Stanton-Cook, Mitchell; Nhu, Nguyen Thi Khanh; Chong, Teik Min; Yin, Wai-Fong; Chan, Kok-Gan; Hancock, Viktoria ; Ussery, David W.; Ulett, Glen C.; Schembri, Mark A.

    In: Infection and Immunity, Vol. 83, No. 5, 2015, p. 1749-1764.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  99. Published

    Monitoring and control of protein production in fungi. / Schalén, Martin; Workman, Mhairi (Main supervisor); Nielsen, Jakob Blæsbjerg (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2015. 124 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  100. Published

    Multilocus Heterozygosity and Coronary Heart Disease: Nested Case-Control Studies in Men and Women. / Mukamal, Kenneth J.; Jensen, Majken K.; Pers, Tune Hannes; Pai, Jennifer K.; Kraft, Peter; Rimm, Eric B.

    In: PLOS ONE, Vol. 10, No. 5, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  101. Accepted/In press
Previous 1 2 3 4 5 6 7 8 ...49 Next
Download list: To download, please limit the number of search results to 1,000 or less.