Department of Systems Biology

  1. 2017
  2. Published

    Genome-wide-analyses of Listeria monocytogenes from food-processing plants reveals clonal diversity and dates the emergence of persisting sequence types. / Knudsen, Gitte Maegaard; Nielsen, Jesper Boye; Marvig, Rasmus Lykke; Ng, Yin; Worning, Peder; Westh, Henrik; Gram, Lone.

    In: Environmental Microbiology Reports, Vol. 9, No. 4, 2017, p. 428-440.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  3. Published

    Genomic epidemiology of a major Mycobacterium tuberculosis outbreak: Retrospective cohort study in a low incidence setting using sparse time-series sampling. / Folkvardsen, Dorte Bek; Norman, Anders; Andersen, Åse Bengård; Rasmussen, Erik Michael; Jelsbak, Lars; Lillebaek, Troels.

    In: Journal of Infectious Diseases, Vol. 216, No. 3, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  4. Published

    Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species. / Nielsen, Jens Christian; Grijseels, Sietske; Prigent, Sylvain ; Ji, Boyang; Dainat, Jacques; Nielsen, Kristian Fog; Frisvad, Jens Christian; Workman, Mhairi; Nielsen, Jens.

    In: Nature Microbiology, Vol. 2, 17044, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  5. Published

    Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis. / Sonnenschein, Eva; Nielsen, Kristian Fog; D'Alvise, Paul; Porsby, Cisse Hedegaard; Melchiorsen, Jette; Heilmann, Jens; Kalatzis, Panos G.; López-Pérez, Mario; Bunk, Boyke; Spröer, Cathrin; Middelboe, Mathias; Gram, Lone.

    In: The I S M E Journal, Vol. 11, No. 2, 2017, p. 569–583.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. / Molina-Santiago, Carlos; Udaondo, Zulema; Gómez Lozano, María; Molin, Søren; Ramos, Juan-Luis.

    In: Environmental Microbiology, Vol. 19, No. 2, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published
  8. Published

    Hierarchical Sets: Analyzing Pangenome Structure through Scalable Set Visualizations. / Pedersen, Thomas Lin.

    In: Bioinformatics, Vol. 33, No. 11, 2017, p. 1604-1612.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  9. Published
  10. Published

    Industrial antifoam agents impair ethanol fermentation and induce stress responses in yeast cells. / Nielsen, Jens Christian; Senne de Oliveira Lino, Felipe; Rasmussen, Thomas Gundelund; Thykær, Jette; Workman, Christopher; Basso, Thiago Olitta.

    In: Applied Microbiology and Biotechnology, Vol. 101, No. 22, 2017, p. 8237-8248.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  11. Published
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